WO2001081619A2 - Conductivity pcr - Google Patents
Conductivity pcr Download PDFInfo
- Publication number
- WO2001081619A2 WO2001081619A2 PCT/DE2001/001025 DE0101025W WO0181619A2 WO 2001081619 A2 WO2001081619 A2 WO 2001081619A2 DE 0101025 W DE0101025 W DE 0101025W WO 0181619 A2 WO0181619 A2 WO 0181619A2
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- conductivity
- pcr
- reaction
- thermal cycler
- polymerase chain
- Prior art date
Links
Classifications
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/508—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above
- B01L3/5085—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above for multiple samples, e.g. microtitration plates
- B01L3/50851—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above for multiple samples, e.g. microtitration plates specially adapted for heating or cooling samples
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L7/00—Heating or cooling apparatus; Heat insulating devices
- B01L7/52—Heating or cooling apparatus; Heat insulating devices with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/02—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating impedance
- G01N27/04—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating impedance by investigating resistance
- G01N27/06—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating impedance by investigating resistance of a liquid
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/14—Process control and prevention of errors
- B01L2200/143—Quality control, feedback systems
- B01L2200/147—Employing temperature sensors
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/06—Auxiliary integrated devices, integrated components
- B01L2300/0627—Sensor or part of a sensor is integrated
- B01L2300/0645—Electrodes
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/06—Auxiliary integrated devices, integrated components
- B01L2300/0627—Sensor or part of a sensor is integrated
- B01L2300/0663—Whole sensors
Definitions
- CONDUCTIVITY PCR (conductivity PCR)
- PCR polymerase chain reaction
- RT-PCR reverse transcriptase polymerase chain reaction
- Previously customary "online" PCR apparatus either stained the DNA formed in the course of the PCR or used fluorescent-labeled oligonucleotide primers to quantify the course of the PCR. A complex optical system for measuring the respective fluorescence was required.
- This invention is based on the consideration of using the amount of phosphate which arises when the PCR reaction proceeds and the associated changes in conductivity as markers for the amplification factor of the PCR reaction. During the course of a PCR reaction, this apparatus determines the phosphate increase “online” by means of small microelectrodes which are immersed in the PCR solution.
- the apparatus is able to measure the amount of DNA or RNA before the PCR reaction
- the amount of phosphate is selected as a marker for detection on the basis of its good specific electrical conductivity and on the basis of its rise in the course of the annealing and extension phase of the PCR, and a microprocessor can then determine the phosphate concentration after the end using a previously determined calibration curve and the determined measured values of the PCR reaction, the amplification factor of the PCR reaction and the DNA or RNA concentration before the start of the PCR reaction, using the time course of the increase in conductivity as a function of the number of cycles and the temperature to determine the original concentration of DNA ,
- An advantage of this invention is that an electronically usable measure is used directly with the conductivity.
- the amount of phosphate is also a particularly sensitive parameter.
- the conductivity changes within each cycle depending on the temperature in accordance with the three phases (annealing, extension, denaturation). Overall, the conductivity decreases in the course of the PCR. In the annealing phase, the conductivity decreases relatively strongly. In the first approximately ten cycles, the conductivity increases linearly ("linear phase") up to the "trashhold cycle". This cycle is particularly suitable for quantifying the polymerase chain reaction. The exponential phase begins from the Trashhold cycle. This is characterized by a total decrease in conductivity. Nevertheless, a phase-wise increase in conductivity remains during the denaturation phase and the extension phase. The changes in conductivity of the individual phases are also suitable for PCR quantification.
Landscapes
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- General Health & Medical Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Clinical Laboratory Science (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- General Physics & Mathematics (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Pathology (AREA)
- Hematology (AREA)
- Electrochemistry (AREA)
- Molecular Biology (AREA)
- Investigating Or Analyzing Materials By The Use Of Electric Means (AREA)
Abstract
Description
Claims
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AU56115/01A AU5611501A (en) | 2000-04-22 | 2001-03-17 | Conductivity pcr |
Applications Claiming Priority (16)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
DE20007376.1 | 2000-04-22 | ||
DE20007378U DE20007378U1 (en) | 2000-04-22 | 2000-04-22 | Phosphate conductivity PCR |
DE20007378.8 | 2000-04-22 | ||
DE20007376U DE20007376U1 (en) | 2000-04-22 | 2000-04-22 | PCR conductivity microarrays |
US20419200P | 2000-05-08 | 2000-05-08 | |
US60/204,192 | 2000-05-08 | ||
US21942100P | 2000-07-20 | 2000-07-20 | |
US21942200P | 2000-07-20 | 2000-07-20 | |
US60/219422 | 2000-07-20 | ||
US60/219,421 | 2000-07-20 | ||
DE20013567.8 | 2000-08-08 | ||
DE20013567U DE20013567U1 (en) | 2000-08-08 | 2000-08-08 | Conductivity PCR |
DE20018005U DE20018005U1 (en) | 2000-10-22 | 2000-10-22 | Sandwich PCR DNA microarray |
DE20018005.3 | 2000-10-22 | ||
DE10060256 | 2000-12-04 | ||
DE10060256.8 | 2000-12-04 |
Publications (3)
Publication Number | Publication Date |
---|---|
WO2001081619A2 true WO2001081619A2 (en) | 2001-11-01 |
WO2001081619A3 WO2001081619A3 (en) | 2002-05-16 |
WO2001081619A8 WO2001081619A8 (en) | 2002-06-13 |
Family
ID=27570759
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/DE2001/001025 WO2001081619A2 (en) | 2000-04-22 | 2001-03-17 | Conductivity pcr |
Country Status (1)
Country | Link |
---|---|
WO (1) | WO2001081619A2 (en) |
Cited By (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1420070A1 (en) * | 2002-11-12 | 2004-05-19 | Samsung Electronics Co., Ltd. | Method for detecting PCR products from electrical signal generation |
WO2010089470A1 (en) * | 2009-02-06 | 2010-08-12 | Bio-Rad Pasteur | Thermal validation apparatus, assembly including a device for the thermal processing of biological samples and such an apparatus, and method for manufacturing such an apparatus |
WO2013150454A2 (en) * | 2012-04-04 | 2013-10-10 | Shama Bhat | System and method for detecting and analyzing amplified deoxyribonucleic acid |
DE102013010961A1 (en) | 2013-07-01 | 2015-01-08 | Borros Arneth | DNA sequencing by conductivity measurement of the DNA polymerase |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0488769A2 (en) * | 1990-11-29 | 1992-06-03 | The Perkin-Elmer Corporation | Thermal cycler for automatic performance of the polymerase chain reaction with close temperature control |
WO1999010530A1 (en) * | 1997-08-22 | 1999-03-04 | Molecular Sensors Limited | Estimation of nucleic acid |
US5891639A (en) * | 1993-11-12 | 1999-04-06 | Geron Corporation | Telomerase activity assays |
-
2001
- 2001-03-17 WO PCT/DE2001/001025 patent/WO2001081619A2/en active Application Filing
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0488769A2 (en) * | 1990-11-29 | 1992-06-03 | The Perkin-Elmer Corporation | Thermal cycler for automatic performance of the polymerase chain reaction with close temperature control |
US5891639A (en) * | 1993-11-12 | 1999-04-06 | Geron Corporation | Telomerase activity assays |
WO1999010530A1 (en) * | 1997-08-22 | 1999-03-04 | Molecular Sensors Limited | Estimation of nucleic acid |
Non-Patent Citations (1)
Title |
---|
J. P. SCHONFIELD: "a rapid semi-automated microtiter plate method for analysis and sequencing by PCR from bacterial stocks" NUCLEIC ACIDS RESEARCH, Bd. 17, Nr. 22, 1989, Seite 9498 XP001053732 * |
Cited By (12)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1420070A1 (en) * | 2002-11-12 | 2004-05-19 | Samsung Electronics Co., Ltd. | Method for detecting PCR products from electrical signal generation |
JP2004159657A (en) * | 2002-11-12 | 2004-06-10 | Samsung Electronics Co Ltd | Method for detecting pcr product by using electrical signal |
US7135294B2 (en) | 2002-11-12 | 2006-11-14 | Samsung Electronics Co., Ltd. | Method for detecting PCR product using electrical signal |
KR100858080B1 (en) * | 2002-11-12 | 2008-09-10 | 삼성전자주식회사 | A method for detecting a PCR product by measuring a electrical signal |
WO2010089470A1 (en) * | 2009-02-06 | 2010-08-12 | Bio-Rad Pasteur | Thermal validation apparatus, assembly including a device for the thermal processing of biological samples and such an apparatus, and method for manufacturing such an apparatus |
FR2941876A1 (en) * | 2009-02-06 | 2010-08-13 | Bio Rad Pasteur | THERMAL VALIDATION APPARATUS, ASSEMBLY OF A DEVICE FOR PROCESSING BIOLOGICAL SAMPLES AND SUCH APPARATUS, AND METHOD FOR MANUFACTURING SUCH APPARATUS |
JP2012517220A (en) * | 2009-02-06 | 2012-08-02 | バイオ−ラッド・イノヴァシオン | Thermal verification apparatus, apparatus for heat treatment of biological sample, assembly including the thermal verification apparatus, and method for manufacturing the thermal verification apparatus |
AU2009339202B2 (en) * | 2009-02-06 | 2015-04-02 | Bio-Rad Europe Gmbh | Thermal validation apparatus, assembly including a device for the thermal processing of biological samples and such an apparatus, and method for manufacturing such an apparatus |
US9221054B2 (en) | 2009-02-06 | 2015-12-29 | Bio-Rad Innovations | Thermal validation apparatus, assembly including a device for the thermal processing of biological samples and such an apparatus, and method for manufacturing such an apparatus |
WO2013150454A2 (en) * | 2012-04-04 | 2013-10-10 | Shama Bhat | System and method for detecting and analyzing amplified deoxyribonucleic acid |
WO2013150454A3 (en) * | 2012-04-04 | 2013-11-28 | Shama Bhat | System and method for detecting and analyzing amplified deoxyribonucleic acid |
DE102013010961A1 (en) | 2013-07-01 | 2015-01-08 | Borros Arneth | DNA sequencing by conductivity measurement of the DNA polymerase |
Also Published As
Publication number | Publication date |
---|---|
WO2001081619A8 (en) | 2002-06-13 |
WO2001081619A3 (en) | 2002-05-16 |
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