TW201021828A - Antibodies and related molecules that bind to 58P1D12 proteins - Google Patents
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201021828 六、發明說明: 【發明所屬之技術領域】 本專利說明書所述之本發明係關於可結合名為58P1D12 之蛋白質的抗體及其結合片段及由其工程改造之分子。本 發明進一步係關於適用於治療表現58P1D12之癌症的診斷 性、預後性、預防性及治療性方法及組合物。 相關申請案 本申請案主張2008年8月20曰申請之臺灣申請案第 ❹ 097131869號、2009年3月9曰申請之臺灣申請案第 098107574號、2008年8月20日申請之美國臨時專利申請案 第61/207,862號及2008年8月20日申請之美國實用新型專利 申請案第12/195,208號、及2009年2月17曰申請之美國臨時 申請案第61/153,225號的優先權。該等申請案之内容全部 以引用方式併入本文中。 經由EFS網站所提交之序列表之參考 如MPEP §1730 II.B.2(a)(C)中所授權及闡述,以下經由 ® USPTO EFS網站伺服器電子遞交之序列表之整個内容以引 用方式全部併入本文中以用於所有目的。已鑑別以電子方 式提交之如下正文檔案之序列表: 檔案名稱 創建曰期 大小(位元組) 511582002083Seqlist.txt 2009年7月14曰 57,186 【先前技術】 癌症為第二個主要的人類死亡原因,僅次於冠脈疾病。 在全世界範圍内,每年有數百萬人死於癌症。據美國癌症 142769.doc 201021828 學會(American Cancer society)報導,僅在美國因癌症死亡 的人數每年遠遠超過五十萬,其中每年新診斷者超過一百 二十萬例。雖然因心臟病所致之死亡已明顯減少,但癌症 所致之死亡卻普遍上升。在下個世紀初期,預計癌症將成 為首要的死亡原因。 =全=界範圍内,有數種癌症引人注意係為主要殺手。 特定而言’肺癌、前列腺癌、乳癌、結腸癌、胰腺癌、印 巢癌及膀胱癌代表癌症死亡之主要原因。該等癌及幾乎所 有的其他癌均具有共同的致命特徵。除極少數例外情況 外,癌轉移性疾病為致命性的。此外,即使對於最初律免 於其原發性癌症的彼等癌症患者,共同經歷已顯示其壽命 發生顯著地變化。很多癌症患者因知道復發或治療失敗之 可能性會經歷嚴重焦慮症。很多癌症患者在治療後會經歷 身體虛弱。此外’很多癌症患者會經歷復發。 在全世界範圍内,前列腺癌為男性之第四個盛行的癌 症。在北美及北歐,其至今為男性之最常見癌症且為男性 之第二主要癌症死亡原因。僅在美國,每年死於此疾病的 ^陡遠遠超過3〇,000人’僅次於肺癌。雖然該等數字具有 f重陡㉟對於轉移性前列腺癌仍無有效的治療法。手術 】!腺刀除術、放射療法、激素切除療法、手術閣割及化 學療法仍為主要治療形式。遺憾的是,該等治療對於很多 人=無效的且往往會伴隨不良後果。 Ί 7之刖,缺乏可準確偵測早期局部化腫瘤之前列腺腫 瘤仏〜仍為此疾病之診斷及控制中的明顯偈限。雖然血清 142769.doc 201021828 如列腺特異性抗原(PSA)檢定法已為非常有用的工具,但 公認其在若干重要方面缺乏特異性及一般效用。 在鑑別針對前列腺癌之其他特異性標誌方面的進展已藉 由產生可在小鼠中重現該疾病之不同階段之前列腺癌異種 移植物得到改良。LAPC(洛杉磯(Los. Angeles)前列腺癌)異 種移植物為在嚴重複合型免疫缺乏(SCID)小鼠中具有倖存 繼代且已呈現模擬雄激素.依賴性轉變為雄激素無關性之能 力的前列腺癌異種移植物(Klein等人,1997,Nat. Med. 參 3:402)。最近鑑別的前列腺癌標誌、包括pcTA-ysu等人, 1996, Proc. Natl. Acad. Sci. USA 93: 7252)、前列腺特異性 膜(PSM)抗原(Pinto 等人,Clin Cancer Res 1996 年 9 月 2 日201021828 VI. OBJECTS OF THE INVENTION: TECHNICAL FIELD The invention described in this patent specification relates to antibodies and binding fragments thereof which can bind to a protein named 58P1D12 and molecules engineered therefrom. The invention further relates to diagnostic, prognostic, prophylactic and therapeutic methods and compositions suitable for the treatment of cancers exhibiting 58P1D12. RELATED APPLICATIONS This application claims US Provisional Patent Application No. 097131869, filed on August 20, 2008, and Taiwan Application No. 098107574, filed on March 20, 2008, filed on August 20, 2008 The priority of U.S. Provisional Application No. 61/153, 225, filed on Jan. 20, 2008, and U.S. Provisional Application No. 61/153,225, filed on Jan. 20, 2008. The contents of these applications are hereby incorporated by reference in their entirety. References to the Sequence Listing submitted via the EFS website are as authorized and set forth in MPEP §1730 II.B.2(a)(C), and the entire contents of the Sequence Listing via the USPTO EFS Website Server are referenced below. All are incorporated herein for all purposes. The sequence listing of the following text files submitted electronically has been identified: File name creation period size (bytes) 511582002083Seqlist.txt July 14, 2009, 57, 186 [Prior Art] Cancer is the second major cause of human death, Second only to coronary artery disease. Millions of people die of cancer every year around the world. According to the American Cancer Society, the number of cancer deaths in the United States alone exceeds 500,000 a year, with more than 1.2 million new diagnoses per year. Although the deaths from heart disease have decreased significantly, the deaths from cancer have generally increased. In the early part of the next century, cancer is expected to be the leading cause of death. = All = within the bounds, there are several types of cancer that attract attention as the main killer. In particular, 'lung cancer, prostate cancer, breast cancer, colon cancer, pancreatic cancer, nest cancer, and bladder cancer represent the leading cause of cancer death. These and almost all other cancers share a common fatal feature. With a few exceptions, cancer metastatic disease is fatal. Moreover, even for those cancer patients who were initially free from their primary cancer, the common experience has shown a significant change in their longevity. Many cancer patients experience severe anxiety because they know the likelihood of recurrence or treatment failure. Many cancer patients experience physical weakness after treatment. In addition, many cancer patients experience relapse. Prostate cancer is the fourth most prevalent cancer in men worldwide. In North America and Northern Europe, it is by far the most common cancer in men and the second leading cause of cancer death in men. In the United States alone, the annual mortality of this disease is much steeper than 3,000 people, second only to lung cancer. Although these numbers have a f-threshold 35, there is no effective treatment for metastatic prostate cancer. Surgery 】! Abdominal surgery, radiation therapy, hormone excision therapy, surgical cutting and chemotherapy are still the main forms of treatment. Unfortunately, these treatments are ineffective for many people and often have adverse consequences. Ί 7 刖, lack of accurate detection of early localized tumors of the prostate tumor 仏 ~ still clear limitations in the diagnosis and control of this disease. Although serum 142769.doc 201021828 has been a very useful tool for the gland-specific antigen (PSA) assay, it is recognized to lack specificity and general utility in several important aspects. Advances in the identification of other specific markers for prostate cancer have been improved by the generation of prostate cancer xenografts that can reproduce the different stages of the disease in mice. LAPC (Loss Angeles prostate cancer) xenografts are prostates that have survived in severely complex immunodeficiency (SCID) mice and have demonstrated the ability to mimic androgen-dependent conversion to androgen-independent Cancer xenografts (Klein et al., 1997, Nat. Med. Ref. 3:402). Recently identified prostate cancer markers, including pcTA-ysu et al, 1996, Proc. Natl. Acad. Sci. USA 93: 7252), prostate specific membrane (PSM) antigens (Pinto et al, Clin Cancer Res, September 1996) 2 days
(9): 1445-51)、STEAP(Hubert等人,Proc Natl Acad Sci U S A. 1999年12月7日;96(25): 14523-8)及前列腺幹細胞抗(9): 1445-51), STEAP (Hubert et al, Proc Natl Acad Sci U S A. December 7, 1999; 96(25): 14523-8) and prostate stem cell resistance
原(PSCA)(Reiter等人 ’ 1998,Proc. Natl. Acad· Sci. USA 95: 1735)〇 $ 雖然先前鑑別的標諸(諸如PSA、PSM、 PCTA 及 5 8P1D12)有助於診斷及治療前列腺癌,但為進一步改良診 斷及治療’仍需要鑑別針對前列腺癌及相關癌之其他標諸 及治療標乾。 腎細胞癌(RCC)在成人惡性腫瘤中占約3%。一旦腺瘤達 到2至3 cm之直徑,則存在惡性腫瘤可能性。在成人中, 兩種主要的惡性腎腫瘤為腎盂或輸尿管之腎細胞腺癌及移 行細胞癌。在美國’腎細胞腺癌之發生率估計超過29,〇〇〇 例’且在1998年有超過11,600名患者死於此疾病。移行細 142769.doc 201021828 胞癌不太常見,在美國每年發生率為約5〇〇例。 數十年來,手術一直為腎細胞腺癌之主要療法。直至最 近,任何全身性療法仍無法治癒轉移性疾病。隨著全身性 療法、尤其免疫療法之最新發展,可以侵入方式接近具有 持久反應可能性之適當患者之轉移性腎細胞癌。儘管如 此’仍需要用於此等患者之有效療法。 在美國所有新癌症病例當中,膀胱癌在男性令占約 (第五大常見贅瘤)且在女性中占3%(第八大常見費瘤)。 隨著老年人口增多的同時,發病率緩慢上升。在】998年, 估計存在54,500例,包括39 5〇〇例男性及15 〇〇〇例女性。 在美國,年齡調整性發病率對於每1〇〇,〇〇〇名男性為”且 對於每1 〇〇,〇〇〇名女性為8。男性/女性之3 : i歷史性比率可 能不斷降低,此與女性吸煙模式有關。在1998年估計膀 胱癌引起4000例死亡(男性7,800且女性3 9〇〇)。膀脱癌發 生率及死亡率隨年齡急劇上升且隨人σ變得愈老而愈成為 問題。 大部分膀胱癌會在膀胱復發。用經尿道膀胱切除術 (TUR)與膀胱内化學療法或免疫療法之組合來控制膀胱 癌。膀胱癌之多灶及復發性質說明了 TURi侷限性。大部 分肌肉侵人型癌症無法藉由單獨治癒。根治性膀脱切 除術及尿流改道為消除癌症之最有效方式,但對泌尿功能 及性功能具有不能否認的影響。對於有益於膀胱癌患者之 治療形式仍存在很大需要。 2000年在美國估計出現13〇2〇〇例結腸直腸癌病例包 142769.doc 201021828 括93,_例結腸癌病例及3M〇〇例直腸癌病例。結腸直腸 癌為男性及女性之第三個主要常見癌症。在1992年_1996 年期間,發病率明顯降低(每年降低21%)。研究顯示,此 降低係因為4檢增多及息肉移除、預防息肉發展為侵入性 癌症。在2000年,估計存在56,3〇〇例死亡㈠7 7〇〇例死於結 腸癌、8,_例死於直腸癌),占美國所有癌症死亡數之約 11%。 φ 目刖,手術為結腸直腸癌之最常見治療形式,且對於未 曾擴散之癌症,其通常均可治癒。對於癌症已深深貫穿腸 壁或已擴散至淋巴結之大部分患者,在手術之前或之後進 订化學療法或化學療法加放射。結腸癌有時需要永久結腸 造口術(形成腹部開孔以便消除人體廢物)且直腸癌偶爾需 要之。對於結腸直腸癌之有效診斷及治療形式仍存在需 要。 在2000年,估計存在164,1〇〇例肺及支氣管癌新病例, φ 占美國所有癌症診斷之丨4 %。肺及支氣管癌在男性中之發 病率明顯降低,自1984年每10〇,〇〇〇高達86 5降至1996年之 70.0 ^在一十世紀九十年代,在女性當中的增長率開始減 緩。在1996年,女性發病率每1〇〇 〇〇〇為42 3。 在2000年,肺及支氣管癌估計引起156,9〇〇例死亡,占 全部癌症死亡數之28%。在1992年-1996年期間,肺癌致死 率在男性當中明顯降低(每年降低17%),而女性之死亡率 仍顯著上升(每年上升〇.9%)。自1987年以來,每年死於肺 癌比死於乳癌的女性要多,此為4〇多年來女性癌症死亡之 J42769.doc 201021828 主要原因。肺癌發病率及死亡率降低很可能因過去3〇年來 之吸煙率下降所致;然而,女性之吸煙模式之減少落後於 男性。令人擔憂較,雖然成人㈣消費之降低已減緩, 但青少年之菸草消費卻再次上升。 肺及支氣管癌之治療選擇方案係依據癌症之類型及階段 判定且包括手術、放射療法及化學療法。對於多種局部化 癌症,一般選擇手術治療。由於該疾病到發現時一般已擴 散,因此往往需要將放射療法及化學療法與手術組合。單 獨或與放射組合之化學療法為選用於小細胞肺癌之治療; 經此療法治療,大部分患者經歷緩解,在有些情況下,此 緩解為長久的。然而,不斷需要針對肺及支氣管癌之有效 治療及診斷方法。 預計2000年期間,美國女性當中出現估計182,8〇〇例侵 入性乳癌新病例。此外,預計2000年在男性中診斷到約 1,400例乳癌新病例。女性乳癌發生率在二十世紀八十年 代每年上升約4%之後,在九十年代已穩定至每1〇〇〇〇〇人 約110 · 6例。 僅在美國,估計2000年就有41,2〇〇人(女性4〇8〇〇人男 性400人)死於乳癌。乳癌在女性癌症死亡當中列第二。裙 據最新資料,在1992年-1996年期間,死亡率顯著降低,< 白人與黑人年輕女性降幅最大。此等降低多半為早期偵測 及治療改良之結果。 考量醫療環境及患者偏好,乳癌治療可包括乳房腫瘤切 除術(局部移除腫瘤)及腋下淋巴結移除;乳房切除術(手術 142769.doc 201021828 移除乳房)及腋下淋巴結移除;放射療法;化學療法;或 激素療法。通常,將兩種或兩種以上方法組合使用。許多 研究已證明,對於早期疾病’乳房腫瘤切除術加放射療法 之後的長期存活類似於改良型根治性乳房切除術之後的存 活。重建技術之顯著進步為乳房切除術之後的乳房重建提 供數種選擇方案。最近,此重建術已與乳房切除術同時執 行0Original (PSCA) (Reiter et al. '1998, Proc. Natl. Acad. Sci. USA 95: 1735) 〇$ Although previously identified targets (such as PSA, PSM, PCTA, and 5 8P1D12) are helpful in diagnosing and treating the prostate Cancer, but for further improvement in diagnosis and treatment, it is still necessary to identify other targets and therapeutic targets for prostate cancer and related cancers. Renal cell carcinoma (RCC) accounts for approximately 3% of adult malignancies. Once the adenoma reaches a diameter of 2 to 3 cm, there is a possibility of malignancy. In adults, the two major malignant renal tumors are renal cell adenocarcinoma and transitional cell carcinoma of the renal pelvis or ureter. In the United States, the incidence of renal cell adenocarcinoma is estimated to exceed 29, and in 1998 more than 11,600 patients died of this disease. Migration is fine 142769.doc 201021828 Cell carcinoma is less common and occurs in the United States at an annual rate of about 5 cases. Surgery has been the primary treatment for renal cell adenocarcinoma for decades. Until recently, any systemic therapy still failed to cure metastatic disease. With the recent developments in systemic therapies, particularly immunotherapy, it is possible to invasively approach metastatic renal cell carcinoma of a suitable patient with a promising response. Despite this, there is still a need for effective therapies for such patients. Among all new cancer cases in the United States, bladder cancer accounts for the majority of men (the fifth most common tumor) and 3% of women (the eighth most common tumor). As the elderly population increases, the incidence rate rises slowly. In 998, an estimated 54,500 cases were included, including 39 5 males and 15 females. In the United States, the age-adjusted incidence rate is “for every 〇〇, and for every 〇〇, for every 〇〇, 8 for women. The male/female 3: i historical ratio may continue to decrease, This is related to the female smoking pattern. In 1998, it was estimated that bladder cancer caused 4000 deaths (7,800 males and 39 females). The incidence and mortality of bladder cancer increased sharply with age and became older as people became older. It becomes a problem. Most bladder cancers recur in the bladder. Bladder cancer is controlled by a combination of transurethral cystectomy (TUR) and intravesical chemotherapy or immunotherapy. The multifocal and recurrent nature of bladder cancer illustrates the limitations of TURi. Most muscle invasive cancers cannot be cured by themselves. Radical bladder dissection and urinary diversion are the most effective ways to eliminate cancer, but have an undeniable effect on urinary function and sexual function. For patients with bladder cancer. There is still a great need for the form of treatment. In 2000, there were an estimated 13 cases of colorectal cancer in the United States. 142769.doc 201021828 includes 93, _ cases of colon cancer and 3M cases of rectal cancer Cases. Colorectal cancer is the third most common cancer in men and women. During 1992-1996, the incidence was significantly reduced (21% per year). Studies have shown that this decrease is due to increased 4 tests and polyp removal. To prevent the development of polyps into invasive cancer. In 2000, there were an estimated 56,3 deaths (1), 7 7 deaths from colon cancer, 8 deaths from rectal cancer, accounting for the total number of cancer deaths in the United States. 11%. φ Vision, surgery is the most common form of treatment for colorectal cancer, and it can usually be cured for cancers that have not spread. For cancer patients who have penetrated the intestinal wall or have spread to most of the lymph nodes, Before or after surgery, you can order chemotherapy or chemotherapy plus radiation. Colon cancer sometimes requires permanent colostomy (formation of abdominal openings to eliminate human waste) and rectal cancer is occasionally needed. Effective diagnosis and treatment of colorectal cancer Forms still exist. In 2000, there were an estimated 164,1 new cases of lung and bronchial cancer, φ accounting for 4% of all cancer diagnoses in the United States. Lung and bronchial cancer The incidence rate in sex has been significantly reduced, from 10 to 10 in 1984, and as high as 86 5 to 70.0 in 1996. In the 1990s, the growth rate among women began to slow down. In 1996, women The incidence rate was 42 3 per 1〇〇〇〇〇. In 2000, lung and bronchial cancer were estimated to cause 156,9 deaths, accounting for 28% of all cancer deaths. During 1992-1996, lung cancer died. The rate is significantly lower among men (17% per year), while female mortality is still rising significantly (up 9% per year). Since 1987, more women die of lung cancer each year than women who die from breast cancer. 4 years of female cancer death for many years J42769.doc 201021828 The main reason. The reduction in lung cancer morbidity and mortality is most likely due to the decline in smoking rates in the past three years; however, the decline in women's smoking patterns lags behind that of men. Worrying, although the decline in adult (4) consumption has slowed, the tobacco consumption of young people has risen again. Treatment options for lung and bronchial cancer are based on the type and stage of cancer and include surgery, radiation therapy, and chemotherapy. For a variety of localized cancers, surgery is generally chosen. Since the disease has generally spread to the time of discovery, it is often necessary to combine radiation therapy and chemotherapy with surgery. Chemotherapy, alone or in combination with radiation, is selected for the treatment of small cell lung cancer; most patients experience remission after treatment with this therapy, and in some cases, this relief is long-lasting. However, there is a continuing need for effective treatment and diagnostic methods for lung and bronchial cancer. It is estimated that during the year 2000, there will be an estimated 182,8 new cases of invasive breast cancer among women in the United States. In addition, approximately 1,400 new cases of breast cancer are expected to be diagnosed in men in 2000. The incidence of breast cancer in women increased by about 4% per year in the 1980s and stabilized to about 110.6 per 100 people in the 1990s. In the United States alone, it is estimated that in 2001, 41,2 (a female, 4, and 8 males) died of breast cancer. Breast cancer ranks second among female cancer deaths. Skirts According to the latest data, between 1992 and 1996, the mortality rate was significantly reduced, &# white and black young women fell the most. These reductions are mostly the result of early detection and treatment improvement. Considering the medical environment and patient preferences, breast cancer treatment may include lumpectomy (local removal of the tumor) and axillary lymph node removal; mastectomy (surgery 142769.doc 201021828 removal of the breast) and axillary lymph node removal; radiation therapy Chemotherapy; or hormone therapy. Usually, two or more methods are used in combination. Many studies have demonstrated that long-term survival after early disease's lumpectomy plus radiation therapy is similar to survival after modified radical mastectomy. Significant advances in reconstruction techniques offer several options for breast reconstruction after mastectomy. Recently, this reconstruction has been performed simultaneously with mastectomy.
具有足量周圍正常乳房組織之乳腺管原位癌(DCIS)之局 切除術可預防DCIS之局部復發。乳房放射及/或他莫昔 芬(tamoxifen)可降低其餘乳房組織中DCIS之出現幾率。此 為重要的,原因在於若不治療,則DCIS會發展成侵入性乳 癌。儘管如此,此等治療仍存在嚴重的副作用或續發症。 因此’需要有效的乳癌治療。 在2000年,估計美國存在23,1〇〇例新卵巢癌病例。其占 女性全部癌症之4%且在婦科癌症當中列第二。在1992年_ 1996年期間,印巢癌發生率顯著降低。2〇〇〇年估計因印 巢癌導致14,〇〇〇例死亡。印巢癌所導致之死亡數比女性生 殖系統之任何其他癌症都要多。 手術、放射療法及化學療法為印巢癌之治療選擇方案。 手術-般包括移除一或兩個印巢、輸印管(輸印管-印巢切 除術)及子宮(子宮切除術在有些極早期驢瘤巾,僅移除 所涉及之彡卩巢,尤其對於衫财好之年輕女性。在晚 期疾病巾’設法移除所有腹内疾病以增強化學療法之作 用。對㈣巢癌仍非常需要有效的治療選擇方案。 142769.doc 201021828 在2000年,估計美國存在28,3〇〇例新胰腺癌病例。在過 去20年中,男性胰腺癌發生率已降低。女性胰腺癌發生率 已保持大致恆定,而且可能開始降低。在2〇〇〇年,在美國 估计胰腺癌引起28,200例死亡。在過去2〇年中,男性死亡 率存在微小但明顯的降低(每年約降低〇.9%),而女性死亡 率略微上升。 手術、放射療法及化學療法為胰腺癌之治療選擇方案。 此等治療選擇方案可延長很多患者之存活期及/或減輕很 多患者之症狀,但對於大部分患者,不大可能治癒。對於 癌症之其他治療及診斷選擇方案存在顯著需要。此等選擇 方案包括使用抗體、疫苗及小分子作為治療形式。此外, 在癌症治療及研究之全部領域中,亦需要使用此等形式作 為診斷、偵測、監測及促進先前技術之研究工具。 單株抗體(mAb)之治療效用(G. K〇Mer及c Milstein,Local resection of breast ductal carcinoma in situ (DCIS) with sufficient surrounding normal breast tissue prevents local recurrence of DCIS. Breast radiation and/or tamoxifen reduce the incidence of DCIS in the remaining breast tissue. This is important because if left untreated, DCIS develops into invasive breast cancer. Despite this, there are still serious side effects or continuations in these treatments. Therefore, effective breast cancer treatment is needed. In 2000, it was estimated that there were 23,1 cases of new ovarian cancer in the United States. It accounts for 4% of all cancer in women and ranks second among gynecological cancers. During 1992-1996, the incidence of India's nest cancer was significantly reduced. In 2 years, it is estimated that 14 cases of death due to nest cancer. Nested cancer causes more deaths than any other cancer in the female reproductive system. Surgery, radiation therapy and chemotherapy are the treatment options for Indian cancer. Surgery - generally involves the removal of one or two nests, the printing tube (transprint tube - nesting resection) and the uterus (hysterectomy in some very early stage tumors, only removing the nests involved, Especially for young women with good shirts. In the advanced disease towel, 'try to remove all intra-abdominal diseases to enhance the role of chemotherapy. There is still a strong need for effective treatment options for (4) nest cancer. 142769.doc 201021828 In 2000, estimated There are 28, 3 cases of new pancreatic cancer in the United States. In the past 20 years, the incidence of pancreatic cancer in men has decreased. The incidence of pancreatic cancer in women has remained roughly constant and may begin to decrease. In 2 years, in The United States estimates that pancreatic cancer causes 28,200 deaths. In the past two years, there has been a small but significant decrease in male mortality (about 9% per year), while female mortality has increased slightly. Surgery, radiation therapy, and chemotherapy are Treatment options for pancreatic cancer. These treatment options can prolong the survival of many patients and/or alleviate the symptoms of many patients, but for most patients, it is unlikely to be cured. There are significant needs for other treatment and diagnostic options for the disease. These options include the use of antibodies, vaccines and small molecules as a form of treatment. In addition, in all areas of cancer treatment and research, these forms are also needed for diagnosis and detection. Measuring, monitoring and facilitating research tools of prior art. Therapeutic utility of monoclonal antibodies (mAb) (G. K〇Mer and c Milstein,
Nature 256: 495_497 (1975))正在瞭解中。單株抗體現已獲 准作為移植術、癌症、感染性疾病、心血管疾病及炎症之 療法。不同的同種型具有不同的效應功能。該等功能差異 反映在各種免疫球蛋白同種型之不同三維結構上(p ΜNature 256: 495_497 (1975)) is learning. Individual antibodies have now been approved as a treatment for transplantation, cancer, infectious diseases, cardiovascular diseases and inflammation. Different isotypes have different effector functions. These functional differences are reflected in different three-dimensional structures of various immunoglobulin isotypes (p Μ
Alzari等人,Annual Rev. Immunol., 6:555-580 (1988))。 由於小鼠方便進行免疫且可辨識作為外來抗原之大部分 人類抗原,因此,具有治療潛力之針對人類標靶之mAb通 常係源自於鼠科動物。然而,鼠科動物111八15作為人類治療 劑具有内在缺陷。由於mAb在人體中具有比人類抗體短的 循環半衰期’因此其需要更頻繁的給^更關鍵的是,將 I42769.doc -10· 201021828 鼠科動物抗體重複投與人類免疫系統會引起人類免疫系統 產生如下反應:將小鼠蛋白質作為外來蛋白質識別且產生 人類抗小鼠抗體(HAMA)反應。該HAMA反應可引起過敏 反應及鼠科動物抗體自系統中快速清除,致使鼠科動物抗 體治療無用。為避免該等影響,已設法在小鼠内形成人類 免疫系統。 最初設想希望形成能夠以具有人類序列之抗體對抗原作 出反應之轉殖基因小鼠(參見Bruggemann等人,procAlzari et al., Annual Rev. Immunol., 6:555-580 (1988)). Since mice are susceptible to immunization and can recognize most of the human antigens as foreign antigens, mAbs for human targets with therapeutic potential are generally derived from murine animals. However, the murine 111 8 15 has an inherent defect as a human therapeutic. Since mAbs have a shorter circulating half-life in humans than human antibodies', so they need to be more frequently given. More importantly, the repeated administration of I42769.doc -10· 201021828 murine antibodies to the human immune system causes the human immune system. The following reaction is produced: the mouse protein is recognized as a foreign protein and a human anti-mouse antibody (HAMA) reaction is produced. This HAMA response can cause allergic reactions and rapid clearance of murine antibodies from the system, rendering the murine anti-therapeutic use useless. To avoid these effects, efforts have been made to form the human immune system in mice. It was originally envisaged to form a transgenic mouse capable of responding to an antigen with an antibody having a human sequence (see Bruggemann et al., proc
® Nat'l. Acad. Sci. USA 86:6709-6713 (1989)),但受到 DNA 量限制,所述DNA量可由可供利用之選殖載體穩定維持。 酵母人工染色體(YAC)選殖載體之使用為將人類Ig基因座 之大型生殖系片段引入轉殖基因哺乳動物内起到導引作 用。存在於人類基因組及人類恆定區中之以相同間隔排列 之人類V、D及J區基因中的大部分基本上係使用YAC引入 1机中 種該轉殖基因小鼠品糸稱為XenoMouse®小鼠 •且可購自 Abgenix,Inc. (Fremont CA)。 【發明内容】 本發明提供結合至58P1D12蛋白質及58P1D12蛋白質之 多肽片段的抗體以及其結合片段及由其工程改造之分子。 本發明包含多株及單株抗體、鼠科動物及其他哺乳動物抗 體、嵌合抗體、人源化及完全人類抗體以及經可偵測標諸 或治療劑標記之抗體。在某些實施例中,限制性條件為不 編碼圖3之整個核酸序列及/或不製備圖2之整個胺基酸序 列。在某些實施例中’編碼圖3之整個核酸序列及/或製備 142769.doc 201021828 圖2之整個胺基酸序列’兩者皆採用相應的人類單位劑 型。 本發明進一步提供偵測多個生物樣本中58piD12聚核苦 酸及蛋白質之存在及狀態的方法’以及鑑別5 8p丨D丨2表現 細胞的方法。本發明之一實施例提供監測具有或懷疑具有 某種形式之生長失調(諸如癌症)之組織或血液學樣本中的 58P1D12基因產物的方法。 本發明進一步提供用於治療表現58P1D12之癌症(諸如表 I中所列之組織之癌症)的多種免疫原性或治療性組合物及❹ 策略’包括旨在抑制58P1D12之轉錄、轉譯、加工或功能 的療法以及癌症疫苗。在一態樣中’本發明提供用於治療 人類個體之表現58P1D12之癌症的組合物及包含其之方 法,其中該組合物包含適於人類使用之載劑及一或多種抑 制5 8P1D12產生或功能之藥劑的人類單位劑量。載劑較佳 為人類專用載劑。在本發明之另一態樣中,藥劑為與 58P1D12蛋白質具有免疫反應性之部分。該等部分之非限 制性實例包括(但不限於)抗體(諸如單鏈抗體、單株抗體、© 多株抗體、人源化抗體、嵌合抗體或人類抗體)、其功能 等效物(無論天然存在還是合成)及其組合。該等抗體可與 診斷性或治療性部分接合。在另一態樣中,藥劑為如本文 中所定義之小分子。 【實施方式】 各章節概要 I) 定義 142769.doc •12- 201021828 II.) 58P1D12聚核苷酸 II. A.) 58P1D12聚核苦酸之用途 II.A.1.)監測遺傳異常 II.A.2·)反義實施例 II.A.3.)引子及引子對 II.A.4.) 分離編碼58piD12之核酸分子 III.)® Nat'l. Acad. Sci. USA 86:6709-6713 (1989)), but limited by the amount of DNA, which can be stably maintained by the available selection vector. The use of a yeast artificial chromosome (YAC) selection vector serves as a guide for the introduction of large germline fragments of the human Ig locus into mammals of the transgenic gene. Most of the human V, D, and J region genes that are present at the same interval in the human genome and human constant regions are essentially introduced into the machine using YAC. The transgenic mouse product is called XenoMouse®. Rats are also available from Abgenix, Inc. (Fremont CA). SUMMARY OF THE INVENTION The present invention provides an antibody, a binding fragment thereof, and a molecule engineered thereof, which bind to a polypeptide fragment of 58P1D12 protein and 58P1D12 protein. The invention encompasses polyclonal and monoclonal antibodies, murine and other mammalian antibodies, chimeric antibodies, humanized and fully human antibodies, and antibodies labeled with a detectable label or therapeutic agent. In certain embodiments, the limiting conditions are that the entire nucleic acid sequence of Figure 3 is not encoded and/or the entire amino acid sequence of Figure 2 is not prepared. In some embodiments, the entire nucleic acid sequence encoding Figure 3 and/or the preparation of 142769.doc 201021828, the entire amino acid sequence of Figure 2, employs the corresponding human unit dosage form. The present invention further provides a method of detecting the presence and state of 58 piD12 polynucleic acid and protein in a plurality of biological samples, and a method of identifying cells expressing 5 8p 丨 D 丨 2 . One embodiment of the invention provides a method of monitoring a 58P1D12 gene product in a tissue or hematology sample having or suspected of having some form of growth disorder, such as cancer. The invention further provides a plurality of immunogenic or therapeutic compositions for use in the treatment of cancers exhibiting 58P1D12, such as cancers of the tissues listed in Table I, and the ❹ strategy includes the aim of inhibiting the transcription, translation, processing or function of 58P1D12 Therapy and cancer vaccine. In one aspect, the invention provides a composition for treating a cancer of 58P1D12 in a human subject, and a method comprising the same, wherein the composition comprises a carrier suitable for human use and one or more inhibiting the production or function of 58P1D12 The human unit dose of the agent. The carrier is preferably a human specific carrier. In another aspect of the invention, the agent is part that is immunoreactive with the 58P1D12 protein. Non-limiting examples of such moieties include, but are not limited to, antibodies (such as single chain antibodies, monoclonal antibodies, multi-drug antibodies, humanized antibodies, chimeric antibodies, or human antibodies), functional equivalents thereof (regardless of Naturally occurring or synthetic) and combinations thereof. The antibodies can be conjugated to a diagnostic or therapeutic moiety. In another aspect, the agent is a small molecule as defined herein. [Embodiment] Summary of each chapter I) Definition 142769.doc •12- 201021828 II.) 58P1D12 polynucleotide II. A.) Use of 58P1D12 polynucleic acid II.A.1.) Monitoring genetic abnormality II.A .2·) Antisense Example II.A.3.) Primer and primer pair II.A.4.) Isolation of nucleic acid molecule encoding 58piD12 III.)
IV·) Π.Α.5·)重組核酸分子及宿主-載體系統 58P1D12相關蛋白質 III_ A.)具有基元之蛋白質實施例 III. B·) 58P1D12相關蛋白質之表現 III.C·) 58P1D12相關蛋白質之修飾 III.D.) 5 8P1D12相關蛋白質之用途 58P1D12 抗體 V. ) 58P1D12細胞免疫反應 VI. ) 58P1D12轉殖基因動物 VII. ) 债測58P1D12之方法 VIII. )監測58P1D12相關基因及其產物之狀態之方法 IX) 鑑別與58P1D12相互作用之分子 X·) 治療方法及組合物 X. A.)抗癌疫苗 X.B·)作為基於抗體之療法之標靶的58P1D12 X.C.)58P1D12作為細胞免疫反應之標靶 X.C.I.小基因(minigene)疫苗 X.C.2. CTL肽與辅助肽之組合 142769.doc -13- 201021828 X · C · 3. C T L狀與T細胞致敏劑之組合 X.C.4.包含經CTL及/或HTL肽脈衝標記之dc 的疫苗組合物 X.D.)過繼性免疫療法 X.E.)投與疫苗用於治療或預防目的 XI_) 58P1D12之診斷性及預後性實施例 XII. ) 抑制58P1D12蛋白質功能 ΧΙΙ·Α_) 用細胞内抗體抑制58P1D12 ΧΙΙ.Β·) 用重組蛋白質抑制58P1D12 ◎ XII.C.) 抑制58P1D12轉錄或轉譯 XII .D.) 治療策略之·一般考量 XIII. ) 58P1D12調節劑之鑑別、表徵及用途 XIV. ) RNAi及小型干擾RNA(siRNA)之治療用途 XV. ) 套組/製品 I.)定義: 除非另外定義,否則本文中所用之全部專門術語、註釋 及其他科學術§吾意欲具有熟習本發明所屬技術者通常所瞭❹ 解之含義。在有些情況下,為清楚瞭解及/或供備用參 考’本文中對具有通常所瞭解之含義的術語進行定義,且 本文中包括該等定義不必解釋為表示與此項技術中通常瞭 解之含義具有實質差異。本文中所述或所參考之諸多技術 及程序為熟習此項技術者已充分瞭解且通常使用習知方法 予以使用,諸如以下文獻中所述之廣泛使用的分子選殖方 法:Sambrook 等人,Molecular Cloning: A Lab〇rat〇ry 142769.doc -14- 201021828IV·) Π.Α.5·) Recombinant Nucleic Acid Molecule and Host-Vector System 58P1D12 Related Protein III_ A.) Protein with Primitive Example III. B·) Expression of 58P1D12 Related Protein III.C·) 58P1D12 Related Protein Modification III.D.) 5 8P1D12 related protein use 58P1D12 antibody V.) 58P1D12 cellular immune response VI. ) 58P1D12 transgenic animal VII.) Method 58P1D12 for debt testing VIII. ) Monitoring the status of 58P1D12 related genes and their products Method IX) Identification of the molecule interacting with 58P1D12 X) Therapeutic methods and compositions XA) Anticancer vaccine XB·) 58P1D12 XC) 58P1D12 as a target for antibody-based therapy as a target for cellular immune responses XCI minigene (minigene) vaccine XC2. Combination of CTL peptide and helper peptide 142769.doc -13- 201021828 X · C · 3. Combination of CTL and T cell sensitizer XC4. Contains pulse labeling by CTL and/or HTL peptide Dc vaccine composition XD) adoptive immunotherapy XE) administration of vaccine for therapeutic or prophylactic purposes XI_) diagnostic and prognostic aspects of 58P1D12 Example XII. Inhibition of 58P1D12 protein function ΧΙΙ·Α_) Intracellular Inhibition of 58P1D12 ΧΙΙ.Β·) Inhibition of 58P1D12 by recombinant protein ◎ XII.C.) Inhibition of 58P1D12 transcription or translation of XII.D.) Treatment strategy · General considerations XIII.) Identification, characterization and use of 58P1D12 modulator XIV. Therapeutic Uses of RNAi and Small Interfering RNA (siRNA) XV.) Sets/Products I.) Definitions: Unless otherwise defined, all the specific terms, notes, and other scientific techniques used herein are intended to have the skill of the present invention. The meaning of what is usually understood. In some instances, terms that have a commonly understood meaning are defined in this document for clarity and/or for alternate reference, and the inclusion of such definitions herein is not necessarily to be construed as indicating that it has the meaning commonly understood in the art. Substantial difference. Many of the techniques and procedures described or referenced herein are well known to those skilled in the art and are commonly employed using conventional methods, such as the widely used methods of molecular selection described in the following literature: Sambrook et al., Molecular Cloning: A Lab〇rat〇ry 142769.doc -14- 201021828
Manual第 2版(1989) Cold Spring Harbor Laborat〇ry press. Cold Spring Harbor,N.Y。除非另有說明,否則視情況, 涉及使用市售套組及試劑之程序一般係根據製造商指定之 方案及/或參數執行。 術語「晚期癌症」、「局部晚期癌症」、「晚期疾病」及 「局部晚期疾病」意謂已擴展穿過相關組織被囊之癌症, 且意欲包括依據美國泌尿學學會(American UrologicalManual 2nd Edition (1989) Cold Spring Harbor Laborat〇ry press. Cold Spring Harbor, N.Y. Unless otherwise stated, procedures involving the use of commercially available kits and reagents are generally performed according to the manufacturer's specified protocol and/or parameters, as appropriate. The terms "advanced cancer", "locally advanced cancer", "advanced disease" and "locally advanced disease" mean cancer that has spread through the tissue of the relevant tissue and is intended to be included in the American Urological Society (American Urology).
Association; AUA)系統的 C期疾病;依據 Whitmore-Jewett ⑩系統的C1 _C2期疾病;及依據TNM(腫瘤、結節、轉移)系 統的T3-T4期及N+疾病。一般而言,對於患有局部晚期疾 病之患者不推薦手術,且與患有臨床局部化(侷限於器官) 癌症之患者相比,此等患者實質上具有較不利的結果。 「改變天然糖基化模式」在本文中旨在意謂使存在於天 然序列58P1D12中之一或多個碳水化合物部分缺失(藉由移 除基本之糖基化位點,或藉由用化學及/或酶促方式使糖 魯基化作用缺失),及/或添加一或多個不存在於天然序列 58P1D12中之糖基化位點。此外,該片語包括改變天然蛋 白質之糖基化性質,包括改變所存在之各種碳水化合物部 分之性質及比例。 術語「類似物」係指在結構上與另一分子(例如58p 1 d 12 相關蛋白質)類似或共有類似屬性或一致屬性的分子。舉 例而5 ,58P1D12蛋白質之類似物可由特異性結合 58P1D12之抗體或τ細胞特異性結合。 除非另外明確說明,否則術語「抗體」以最廣泛之意義 142769.doc 201021828 使用二因此,「抗體」可為天然存在之抗體或人造抗體, 諸如藉由習知融合瘤技術製備之單株抗體。抗58piDi2抗Association; AUA) Systemic C disease; C1 _C2 disease according to the Whitmore-Jewett 10 system; and T3-T4 and N+ disease according to the TNM (tumor, nodule, metastasis) system. In general, surgery is not recommended for patients with locally advanced disease, and such patients have substantially less favorable outcomes than patients with clinically localized (organ-limited) cancer. " Altering the natural glycosylation pattern" is herein intended to mean the deletion of one or more carbohydrate moieties present in the native sequence 58P1D12 (by removing the basic glycosylation site, or by using chemistry and/or Alternatively or in an enzymatic manner, the glycosylation is deleted, and/or one or more glycosylation sites not present in the native sequence 58P1D12 are added. In addition, the phrase includes altering the glycosylation properties of the native protein, including altering the nature and proportion of the various carbohydrate moieties present. The term "analog" refers to a molecule that is structurally similar or shares similar or identical properties to another molecule (eg, 58p 1 d 12 related protein). For example, an analog of 5,58P1D12 protein can be specifically bound by an antibody or tau cell that specifically binds to 58P1D12. The term "antibody" is used in its broadest sense unless explicitly stated otherwise. 142769.doc 201021828 The second "antibody" may be a naturally occurring antibody or an artificial antibody, such as a monoclonal antibody prepared by conventional fusion tumor technology. anti-58piDi2 resistance
體包含單株抗體及多株抗體’以及此等抗體之含有抗原結 合域之片段及/或一或多個互補判定區。如本文中所使 用,術語「抗體」係指特異性結合58PID12及/或呈現所要 生物活性之任何形式之抗體或其片段,且特別涵蓋單株抗 體(包括全長單株抗體)、多株抗體、多特異性抗體(例如雙 特異性抗體)及抗體片段,只要其特異性結合58pim2及/ 或呈現所要生物活性。在本文中所提供之方法及組合物中 可使用任何特異性抗體。由此,在一實施例中,術語「抗 體」涵蓋匕3至少一個來自免疫球蛋白輕鏈分子之可變區 及至少一個來自重鏈分子之可變區的分子,該等可變區組 合形成標靶抗原之特異性結合位點。在一實施例中,抗體 為IgG抗體。舉例而言’抗體為IgG1、邮2、邮3或邮4 抗體。適用於本發明方法及組合物中之抗體可於細胞培養 物、噬菌體或各種動物中產生,包括(但不限於)牛、兔、 山羊、小鼠、大鼠、倉鼠、豚鼠、綿羊、狗、貓、猴、黑 猩猩、猿。因此,在一實施例中,本發明之抗體為哺乳動 物抗體。可使用噬菌體技術分離初始抗體或產生具有改變 之特異性或親和力特性的變異體。該等技術為常用技術且 熟知於此項技術中。在一實施例中,抗體係藉由此項技術 已知之重組方式製備。舉例而言,重組抗體可藉由用包含 編碼抗體之DNA序列的載體轉染宿主細胞來製備。可使用 一或多個載體將表現至少一個VL及至少一個VH區之DNA 142769.doc -16- 201021828 序列轉染於宿主細胞中。抗體產生及製備之重組方式之例The body comprises a monoclonal antibody and a plurality of antibodies' and fragments of the antibody comprising an antigen binding domain and/or one or more complementarity determining regions. As used herein, the term "antibody" refers to any form of antibody or fragment thereof that specifically binds 58PID12 and/or exhibits the desired biological activity, and specifically encompasses monoclonal antibodies (including full-length monoclonal antibodies), multiple antibodies, Multispecific antibodies (eg, bispecific antibodies) and antibody fragments, as long as they specifically bind to 58 pim2 and/or exhibit the desired biological activity. Any specific antibody can be used in the methods and compositions provided herein. Thus, in one embodiment, the term "antibody" encompasses at least one molecule derived from the variable region of an immunoglobulin light chain molecule and at least one variable region derived from a heavy chain molecule, the variable regions being combined to form A specific binding site for the target antigen. In one embodiment, the antibody is an IgG antibody. For example, the antibody is an IgG1, Post 2, Post 3 or Post 4 antibody. Antibodies suitable for use in the methods and compositions of the invention can be produced in cell culture, phage, or various animals including, but not limited to, cows, rabbits, goats, mice, rats, hamsters, guinea pigs, sheep, dogs, Cats, monkeys, chimpanzees, baboons. Thus, in one embodiment, the antibody of the invention is a mammalian antibody. Phage technology can be used to isolate the original antibody or to produce variants with altered specificity or affinity properties. These techniques are common techniques and are well known in the art. In one embodiment, the anti-system is prepared by recombinant means known in the art. For example, a recombinant antibody can be produced by transfecting a host cell with a vector comprising a DNA sequence encoding the antibody. The DNA 142769.doc -16-201021828 sequence representing at least one VL and at least one VH region can be transfected into a host cell using one or more vectors. Examples of recombinant methods for antibody production and preparation
示性說明包括Delves, ANTIBODY PRODUCTION: ESSENTIALDemonstrative notes include Delves, ANTIBODY PRODUCTION: ESSENTIAL
TECHNIQUES (Wiley,1997); Shephard等人,MONOCLONAL ANTIBODIES (Oxford University Press, 2000); Goding,TECHNIQUES (Wiley, 1997); Shephard et al., MONOCLONAL ANTIBODIES (Oxford University Press, 2000); Goding,
MONOCLONAL ANTIBODIES: PRINCIPLES AND PRACTICEMONOCLONAL ANTIBODIES: PRINCIPLES AND PRACTICE
(Academic Press, 1993); CURRENT PROTOCOLS IN IMMUNOLOGY (John Wiley & Sons,最新版)。可藉由重 組方式修飾本發明之抗體以增強抗體在介導所要功能方面 ® 之更大功效。由此,使用重組方式藉由取代來修飾抗體係 屬於本發明之範疇内。取代通常為保守性取代。舉例而 言,抗體恆定區中之至少一個胺基酸可經不同殘基置換。 參見例如美國專利第5,624,821號、美國專利第6,194,551 號、申請案第WO 9958572 號及 Angal等人,Mol. Immunol. 30 : 105-08 (1993)。胺基酸之修飾包括胺基酸之缺失、添 加、取代。在有些情況下,該等改變旨在降低非所要活 性,例如補體依賴性細胞毒性。抗體通常係藉由與提供可 義 偵測信號之物質共價或非共價連接來標記。已知各種各樣 的標記及接合技術且其廣泛報導於科學文獻與專利文獻 中。可對此等抗體與正常58P1D12或缺陷58P1D12之結合 進行篩檢。參見例如ANTIBODY ENGINEERING: A PRACTICAL APPROACH (Oxford University Press, 1996)。具有所要生物活性之適當抗體可採用包括(但不限 於)以下各檢定之活體外檢定鑑別:增殖、遷移、黏著、 軟瓊脂生長、血管生成、細胞-細胞通信、細胞凋亡、轉 142769.doc •17- 201021828 運、h號轉導,且可採用以下活體内檢定鑑別·諸如腔瘤 生長抑制。本文中所提供之抗體亦可用於診斷性應用。作 為俘獲抗體或非中和抗體時,可筛檢其結合至特異性抗原 而不抑制抗原之受體結合性或生物活性的能力。作為中和 抗體時,該等抗體可用於競爭性結合檢定。其亦可用於定 #58P1D12或其受體。 抗體片段」之定義為結合至其標靶的免疫球蛋白分子 可變區之至少-部分,亦即抗原結合區。在_項實施例 中,其特別涵蓋單一抗58P1D12抗體及其純系(包括激動◎ 劑、拮抗劑及中和抗體)及具有多抗原決定基特異性之抗 12杬體組合物。本發明方法及組合物之抗體可為單 株或多株抗體。抗體可呈結合抗原之抗體片段之形式包 括Fab片段、F(ab’)2片段、單鏈可變區及其類似形式。完 玉刀子之片丰又可使用此項技術中熟知的方法產生且包括酶 促分解及重組方式。 如本文中所使用,可利用任何形式之「抗原」產生針對 58PID12具特異性之抗體。因此,誘發性抗原可為單一抗〇 原决疋基、多重抗原決定基,或單獨或與此項技術中已知 之一或多種免疫原性增強劑組合的完整蛋白質。誘發性抗 原可為虚刀離之全長蛋白質、細胞表面蛋白質(例如,僅 "用、星抗原之至少一部分轉染之細胞進行免疫)或可溶性 蛋白質(例如,僅採用蛋白質之胞外域部分進行免疫)。抗 原可用經遺傳改造之細胞製備。編碼抗原之dna可為基因 組DNA或非基因組DNA(例如cDNA)且編碼胞外域之至少 I42769.doc •18· 201021828 -部分。如本文中所使用’術語「部分」係指視情況組成 所需抗原之免疫原性抗原決定基的最少數目之胺基酸或核 酸。可使用適於轉型所需之細胞的任何遣傳載體,包^ (但不限於)腺病毒載體、質體及非病毒載體’諸如陽=子 性脂質。在—實施例中’本文中之方法及組合物之抗體特 異性結合所需之58P1D12之胞外域的至少—部分。(Academic Press, 1993); CURRENT PROTOCOLS IN IMMUNOLOGY (John Wiley & Sons, latest version). The antibodies of the invention can be modified by recombinant means to enhance the greater efficacy of the antibody in mediating the desired function. Thus, it is within the scope of the invention to modify the anti-system by substitution using recombinant means. Substitutions are usually conservative substitutions. For example, at least one amino acid in the constant region of the antibody can be substituted with a different residue. See, e.g., U.S. Patent No. 5,624,821, U.S. Patent No. 6,194,551, Application No. WO 9958572, and Angal et al., Mol. Immunol. 30: 105-08 (1993). The modification of the amino acid includes the deletion, addition, and substitution of the amino acid. In some cases, such changes are intended to reduce undesired activity, such as complement dependent cytotoxicity. Antibodies are typically labeled by covalent or non-covalent attachment to a substance that provides a detectable signal. A wide variety of marking and joining techniques are known and are widely reported in scientific and patent literature. Screening of these antibodies in combination with normal 58P1D12 or defective 58P1D12 can be performed. See, for example, ANTIBODY ENGINEERING: A PRACTICAL APPROACH (Oxford University Press, 1996). Appropriate antibodies having the desired biological activity may be identified by in vitro assays including, but not limited to, the following assays: proliferation, migration, adhesion, soft agar growth, angiogenesis, cell-cell communication, apoptosis, transfection 142769.doc • 17- 201021828 Transmitted with h, and can be identified by the following in vivo assays, such as tumor growth inhibition. The antibodies provided herein can also be used in diagnostic applications. As a capture antibody or a non-neutralizing antibody, the ability to bind to a specific antigen without inhibiting the receptor binding or biological activity of the antigen can be screened. As neutralizing antibodies, such antibodies can be used in competitive binding assays. It can also be used to define #58P1D12 or its receptor. An antibody fragment" is defined as at least a portion, i.e., an antigen binding region, of a variable region of an immunoglobulin molecule that binds to its target. In the examples, it specifically covers a single anti-58P1D12 antibody and its pure lines (including agonists, antagonists, and neutralizing antibodies) and anti-12 steroid compositions having multiple epitope specificity. The antibodies of the methods and compositions of the invention may be monoclonal or polyclonal antibodies. The antibody may comprise a Fab fragment, an F(ab')2 fragment, a single chain variable region, and the like in the form of an antibody fragment that binds to the antigen. The tablets of the Jade Knife can be produced using methods well known in the art and include enzymatic decomposition and recombination. As used herein, any form of "antigen" can be utilized to produce antibodies specific for 58PID12. Thus, the elicited antigen can be a single anti-prostaglandin, a multiplex epitope, or a complete protein alone or in combination with one or more immunogenic enhancers known in the art. The elicited antigen can be a full-length protein, a cell surface protein (eg, only "immunized with at least a portion of the star antigen) or a soluble protein (eg, only the extracellular domain of the protein is used for immunization) ). The antigen can be prepared using genetically engineered cells. The dna encoding the antigen may be genomic DNA or non-genomic DNA (e.g., cDNA) and encode at least the extracellular domain I42769.doc • 18· 201021828 - part. The term "portion" as used herein refers to the minimum number of amino acids or nucleic acids that, if appropriate, constitute the immunogenic epitope of the desired antigen. Any deportable vector suitable for the cells required for transformation can be used, including, but not limited to, adenoviral vectors, plastids, and non-viral vectors such as yang = daughter lipids. In the examples, the antibodies of the methods and compositions herein specifically bind at least a portion of the extracellular domain of 58P1D12 required.
本文中所提供之抗體或其抗原結合片段可與「生物活性 劑」接合。如本文中所使用,術語「生物活性劑」係指結 合抗原及/或增強或介導所要生物效應以增強殺死細胞之 毒素的任何合成化合物或天然存在之化合物。 在一實施例中,適用於本發明之結合片段為生物活性片 段。如本文中所使用,術語「生物活性」係指抗體或抗體 片段能夠結合所要抗原之抗原決定基且直接或間接發揮生 物效應。直接效應包括(但不限於):調節' 刺激及/或抑制 生長信號;調節、刺激及/或抑制抗細胞凋亡信號;調 節、刺激及/或抑制細胞凋亡或壞死信號;調節、刺激及/ 或抑制ADCC級聯;及調節、刺激及/或抑制CDC級聯。 「雙特異性」抗體亦適用於本發明方法及組合物。如本 文中所使用,術語「雙特異性抗體」係指對至少兩個不同 抗原之抗原決疋基具有結合特異性的抗體,通常為單株抗 體。在一實施例中,抗原決定基來自同一抗原。在另一實 施例中’抗原決定基來自兩種不同抗原。此項技術中已知 製備雙特異性抗體之方法。舉例而言,雙特異性抗體可使 用兩對免疫球蛋白重鏈/輕鏈之共表現來重組製備。參見 142769.doc •19· 201021828 例如Milstein等人,Nature 305:537-39 (1983)。或者,雙 特異性抗體可使用化學鍵聯製備。參見例如Brennan等 人,Science 229:81 (1985)。雙特異性抗體包括雙特異性 抗體片段。參見例如Hollinger等人,proc. Natl. Acad. Sci. U.S.A. 90:6444-48 (1993),Gruber 等人,j. Immun〇1 152:5368 (1994)° 本文中之單株抗體特別包括r嵌合」抗體,其中重鏈 及/或輕鏈之一部分與來源於特定物種或屬於特定抗體類 或亞類之抗體之對應序列一致或同源,而該(等)鏈之其餘 部分與來源於另一物種或屬於另一抗體類或亞類之抗體之 對應序列一致或同源;以及該等抗體之片段,只要其特異 性結合標靶抗原及/或呈現所要生物活性(美國專利第 4,816,567號;及 Morrison等人,Pr〇c Natl Acad % USA 81: 6851-6855 (1984))。 術語「化學治療劑」係指可有效抑制腫瘤生長之所有化 合物。化學治療劑之非限制性實例包括:烷化劑,例如氮 芬、伸乙亞胺化合物及烷基磺酸鹽;抗代謝物,例如葉 酸、嘌呤或嘧啶拮抗劑;有絲分裂抑制劑,例如長春花生 物驗及鬼臼毒素(podophyllotoxin)衍生物;細胞毒性抗生 素;破壞或干擾DNA表現之化合物;及生長因子受體拮抗 劑。此外,化學治療劑包括細胞毒性劑(如本文令所定 義)、抗體、生物分子及小分子。 術語「密碼子優化序列」係指針對特定宿主種類、藉由 置換具有小於約20%之使用頻率之任何密碼子而得到優化 142769.doc -20- 201021828 的核芽酸序列。針對在給定宿主種類 優化外藉由消除彳g平晚# # 見除在碼子 _ ”肖除轉料樣重複序収/或優化Gc含量而得 到優化的核㈣序列在本文中稱為「表現增強序列」。,The antibody or antigen-binding fragment thereof provided herein can be conjugated to a "bioactive agent". As used herein, the term "biologically active agent" refers to any synthetic compound or naturally occurring compound that binds to an antigen and/or enhances or mediates a desired biological effect to enhance the toxin that kills the cell. In one embodiment, a binding fragment suitable for use in the present invention is a biologically active fragment. As used herein, the term "biologically active" means that the antibody or antibody fragment is capable of binding to the epitope of the desired antigen and exerts a biological effect, either directly or indirectly. Direct effects include, but are not limited to, modulation of 'stimulation and/or inhibition of growth signals; regulation, stimulation, and/or inhibition of anti-apoptotic signals; regulation, stimulation, and/or inhibition of apoptosis or necrosis signals; regulation, stimulation, and / or inhibit the ADCC cascade; and regulate, stimulate and/or inhibit the CDC cascade. "Bispecific" antibodies are also suitable for use in the methods and compositions of the invention. As used herein, the term "bispecific antibody" refers to an antibody having binding specificity for an antigenic thiol group of at least two different antigens, usually a monoclonal antibody. In one embodiment, the epitope is derived from the same antigen. In another embodiment the ' epitope is derived from two different antigens. Methods for making bispecific antibodies are known in the art. For example, a bispecific antibody can be recombinantly produced using the co-expression of two pairs of immunoglobulin heavy/light chains. See 142769.doc • 19· 201021828 eg Milstein et al., Nature 305:537-39 (1983). Alternatively, bispecific antibodies can be prepared using chemical linkages. See, for example, Brennan et al., Science 229: 81 (1985). Bispecific antibodies include bispecific antibody fragments. See, for example, Hollinger et al, proc. Natl. Acad. Sci. USA 90:6444-48 (1993), Gruber et al, j. Immun〇1 152:5368 (1994)° The monoclonal antibodies herein include, inter alia, r-embedded An antibody wherein one of the heavy and/or light chain is identical or homologous to a corresponding sequence of an antibody derived from a particular species or belonging to a particular antibody or subclass, and the remainder of the (and other) strand is derived from another The corresponding sequences of a species or antibodies belonging to another antibody or subclass are identical or homologous; and fragments of such antibodies, as long as they specifically bind to the target antigen and/or exhibit the desired biological activity (U.S. Patent No. 4,816,567; And Morrison et al., Pr〇c Natl Acad % USA 81: 6851-6855 (1984)). The term "chemotherapeutic agent" refers to all compounds which are effective in inhibiting tumor growth. Non-limiting examples of chemotherapeutic agents include: alkylating agents such as nitrogen nitrene, ethyleneimine compounds and alkyl sulfonates; antimetabolites such as folic acid, guanidine or pyrimidine antagonists; mitotic inhibitors such as periwinkle Bioassay and podophyllotoxin derivatives; cytotoxic antibiotics; compounds that disrupt or interfere with DNA expression; and growth factor receptor antagonists. In addition, chemotherapeutic agents include cytotoxic agents (as defined herein), antibodies, biomolecules, and small molecules. The term "codon-optimized sequence" refers to a nucleotide sequence optimized for a particular host species, by replacing any codon having a frequency of use of less than about 20%. 142769.doc -20-201021828. For the optimization of a given host species, the elimination of 彳g平晚## See the optimization of the nuclear (four) sequence in the code _ ” 除 转 转 转 转 转 / / / 优化 优化 优化 优化 优化 优化 优化 优化 优化 优化Performance enhancement sequence." ,
们「Λ合文庫」為藉由將多種化學「基本組分」(諸如試 H、由化學合成法或生物合成法所產生之多種化合 物之集合。舉例而言,線性組合化學文庫(諸如多肽(例如 突變蛋白質)文庫)係針對給定化合物長度(亦即多肽化合物 中之胺基酸數目)、藉由將一組稱為胺基酸的化學基本組 分以每種可能方式組合而形成。經由化學基本組分之該 組合性混合來合成多種化合物(Gauop等人,J Med Chem 37(9): 1233-1251 (1994))。 組合文庫之製備及篩檢已為熟習此項技術者所熟知。該 等組合化學文庫包括(但不限於)肽文庫(參見例如美國專利 第 5,010,175號;Furka,Pept· Prot. Res. 37:487-493 (1991) Houghton 專人’ Nature, 3 54:84-88 (1991))、類狀(pct 公開 案第 W〇 91/19735號)、編碼肽(PCT公開案 WO 93/20242)、 無規生物寡聚物(PCT公開案WO 92/00091)、苯并二氮呼 (benzodiazepine)(美國專利第 5,288,514 號)、多元體 (diversomer)(諸如乙内醯脲、苯并二氮呼及二肽)(H〇bbs等 人,Proc· Nat. Acad. Sci. USA 90:6909-6913 (1993))、插 烯多肽(vinylogous polypeptide)(Hagihara等人,J. Amer."Lite library" is a collection of various compounds produced by a variety of chemical "basic components" (such as test H, chemical synthesis or biosynthesis. For example, linear combinatorial chemical libraries (such as peptides (such as For example, a mutant protein) library is formed for each given length of the compound (ie, the number of amino acids in the polypeptide compound) by combining a group of chemically basic components called amino acids in every possible manner. This combination of chemical basic components is combined to synthesize a variety of compounds (Gauop et al, J Med Chem 37 (9): 1233-1251 (1994).) Preparation and screening of combinatorial libraries are well known to those skilled in the art. Such combinatorial chemical libraries include, but are not limited to, peptide libraries (see, e.g., U.S. Patent No. 5,010,175; Furka, Pept. Prot. Res. 37:487-493 (1991) Houghton Specialist' Nature, 3 54:84-88 (1991)), genus (pct publication No. W〇91/19735), coding peptide (PCT Publication WO 93/20242), random biological oligomer (PCT Publication WO 92/00091), benzo Benzodizepine (US Patent No. No. 5,288,514), diversomer (such as beta-urea, benzodiazepine and dipeptide) (H〇bbs et al, Proc. Nat. Acad. Sci. USA 90: 6909-6913 (1993)) , vinylogous polypeptide (Hagihara et al., J. Amer.
Chem. Soc. 114:6568 (1992))、具有β-D-葡萄糖骨架之非肽 肽模擬物(Hirschmann等人,J. Amer. Chem. Soc. 114:9217- 142769.doc -21 - 201021828 9218 (1992))、小化合物文庫之類似有機合成(Chen等人’ J. Amer. Chem. Soc. 116:2661 (1994))、寡聚胺基曱酸酯 (Cho 等人,Science 261:1303 (1993))及 / 或肽基膦酸酯 (Campbell等人,J. 〇rg· Chem. 59:658 (1994))。一 般參見 Gordon等人,J. Med. Chem. 37:1385 (1994);核酸文庫(參 見例如Stratagene,Corp.)、肽核酸文庫(參見例如美國專利 5,539,083)、抗體文庫(參見例如Vaughn等人,Nature Biotechnology 14(3): 309-314 (1996),及PCT/US96/10287)、 碳水化合物文庫(參見例如Liang等人’8(^11〇6 274:1520-1522 (1996),及美國專利第5,593,853號)及小有機分子文 庫(參見例如苯并二氮呼:Baum, C & EN,1月1 8曰,第33 頁(1993);類異戊二烯:美國專利第5,569,588號;噻唑啶 酮(thiazolidinone)及間喧0坐酮(metathiazanone):美國專利 第5,549,974號;吡咯啶:美國專利第5,525,735號及第 5,519,134號;嗎啉基化合物:美國專利第5,506,337號;苯 并二氮呼:美國專利第5,288,514號;及其類似物)。 製備組合文庫之裝置市面有售(參見例如357 NIPS,390 NIPS, Advanced Chem Tech, Louisville KY; Symphony, Rainin, Woburn, ΜΑ; 433A, Applied Biosystems, Foster City,CA; 9050, Plus, Millipore,Bedford, NIA)。亦已開發 出用於溶液相化學方法之多種熟知機器人系統。此等系統 包括自動化工作站,諸如Takeda Chemical Industries, LTD.(Osaka, Japan)所開發之自動化合成設備及使用機器人 臂模擬藥師所執行之人工合成操作的諸多機器人系統 142769.doc -22- 201021828 (Zymate H, Zymark Corporation, Hopkinton, Mass.; Orca, Hewlett-Packard, Palo Alto, Calif.)。任何上述裝置均適用 於本發明。此等裝置之性質及改進實施(若有的話)(以使得 其可依本文中所述操作)對於熟習相關技術者將顯而易 見。此外,多種組合文庫本身市面有售(參見例如 ComGenex, Princeton, NJ; Asinex, Moscow, RU; Tripos, Inc., St. Louis, MO; ChemStar, Ltd, Moscow, RU; 3D Pharmaceuticals, Exton, PA; Martek Biosciences, Columbia, 鲁MD等)。 如本文中所使用,術語「保守性取代」係指胺基酸取代 為熟習此項技術者所已知且一般可在不會導致所得分子之 生物活性改變的情況下進行。熟習此項技術者應瞭解,在 多肽之非必需區域中進行單一胺基酸取代在實質上通常不 會改變生物活性(參見例如Watson等人,MOLECULAR BIOLOGY OF THE GENE, The Benjamin/Cummings Pub. • Co.,第224頁(1987年第4版))。該等例示性取代較佳根據 表Ill(a-b)中所列之彼等取代進行。舉例而言,該等改變包 括用異白胺酸(I)、纈胺酸(V)及白胺酸(L)中之任一者取代 此等疏水性胺基酸中之任何另一者;用天冬胺酸(D)取代 麩胺酸(E)且反之亦然;用麩胺醯胺(Q)取代天門冬醯胺(N) 且反之亦然;及用絲胺酸(S)取代蘇胺酸(T)且反之亦然。 視特定胺基酸之環境及其在蛋白質三維結構中之作用而 定’其他取代亦可視為保守性取代。舉例而言,甘胺酸 (G)與丙胺酸(A)通常可互換,而丙胺酸(A)與纈胺酸(V)亦 142769.doc -23- 201021828 可互換。具有相對疏水性之f硫胺酸(M)通常可與白胺酸 及異白胺酸互換,且有時可錢胺酸互換。離胺酸⑻與 精胺酸(R)通常可在其中胺基酸殘基之顯著特徵為其電荷 且該兩個胺基酸殘基之pK不同並不重要的位置中互換。其 他改變在特殊環境下可視為「保守性」(參見例如本文'中 之表 111(a) ;「Biochemistry」第二版第 13_15 頁,[仙咕Chem. Soc. 114:6568 (1992)), a non-peptide peptidomimetic having a β-D-glucose backbone (Hirschmann et al., J. Amer. Chem. Soc. 114: 9217-142769.doc -21 - 201021828 9218 (1992)), similar organic synthesis of small compound libraries (Chen et al. 'J. Amer. Chem. Soc. 116:2661 (1994)), oligoamino phthalate (Cho et al., Science 261:1303 ( 1993)) and / or peptidyl phosphonates (Campbell et al, J. 〇rg. Chem. 59: 658 (1994)). See, in general, Gordon et al, J. Med. Chem. 37: 1385 (1994); nucleic acid libraries (see, for example, Stratagene, Corp.), peptide nucleic acid libraries (see, e.g., U.S. Patent 5,539,083), antibody libraries (see, e.g., Vaughn et al. Nature Biotechnology 14(3): 309-314 (1996), and PCT/US96/10287), carbohydrate libraries (see, for example, Liang et al. '8 (^11〇6 274:1520-1522 (1996), and US patents) No. 5,593,853) and a library of small organic molecules (see, for example, benzodiazepine: Baum, C & EN, Jan. 18, p. 33 (1993); isoprenoid: U.S. Patent No. 5,569,588; Thiazolidinone and metathiazanone: U.S. Patent No. 5,549,974; pyrrolidine: U.S. Patent Nos. 5,525,735 and 5,519,134; morpholinyl compound: U.S. Patent No. 5,506,337; Diazol: U.S. Patent No. 5,288,514; and its analogs. Devices for preparing combinatorial libraries are commercially available (see, for example, 357 NIPS, 390 NIPS, Advanced Chem Tech, Louisville KY; Symphony, Rainin, Woburn, ΜΑ; 433A, Applied Biosystems, Foste r City, CA; 9050, Plus, Millipore, Bedford, NIA. A variety of well-known robotic systems for solution phase chemistry have also been developed. These systems include automated workstations such as Takeda Chemical Industries, LTD. (Osaka, Japan). The automated synthesis equipment developed and the robotic system using the robotic arm to simulate the synthetic operations performed by the pharmacist 142769.doc -22- 201021828 (Zymate H, Zymark Corporation, Hopkinton, Mass.; Orca, Hewlett-Packard, Palo Alto Any of the above devices are suitable for use in the present invention. The nature and improved implementation of such devices, if any, so that they can operate as described herein, will be apparent to those skilled in the art. A variety of combinatorial libraries are commercially available (see, for example, ComGenex, Princeton, NJ; Asinex, Moscow, RU; Tripos, Inc., St. Louis, MO; ChemStar, Ltd, Moscow, RU; 3D Pharmaceuticals, Exton, PA; Martek Biosciences , Columbia, Lu MD, etc.). As used herein, the term "conservative substitution" means that the amino acid substitution is known to those skilled in the art and can generally be carried out without causing a change in the biological activity of the resulting molecule. Those skilled in the art will appreciate that single amino acid substitutions in non-essential regions of the polypeptide will generally not substantially alter biological activity (see, for example, Watson et al., MOLECULAR BIOLOGY OF THE GENE, The Benjamin/Cummings Pub. Co., p. 224 (4th edition, 1987)). These exemplary substitutions are preferably carried out according to the substitutions listed in Table 111 (a-b). For example, the alterations include the substitution of any of the other hydrophobic amino acids with any one of isoleucine (I), valine (V), and leucine (L); Substituting aspartic acid (D) for glutamic acid (E) and vice versa; replacing glutamine (N) with glutamine (Q) and vice versa; and replacing with serine (S) Threonine (T) and vice versa. Depending on the environment of the particular amino acid and its role in the three-dimensional structure of the protein, other substitutions may also be considered conservative substitutions. For example, glycine (G) and alanine (A) are usually interchangeable, while alanine (A) and valine (V) are also interchangeable. 142769.doc -23-201021828. The thiamine (M) which is relatively hydrophobic is generally interchangeable with leucine and isoleucine, and sometimes it is interchangeable with niacin. The lysine (8) and arginine (R) are generally interchangeable in positions where the significant character of the amino acid residue is its charge and the pK of the two amino acid residues are not important. Other changes can be considered “conservative” in special circumstances (see, for example, Table 111(a) in this article; “Biochemistry”, second edition, page 13_15, [Xian Wei
Stryer編(Stanford University) ; Henikoff等人,PNAS 1992 第 89 卷 10915-10919 ; Lei 等人,j Biol chem 1995年 5月 19 日;270(20):11882-6)。其他取代亦為容許的且可依據經❹ 驗或依照已知的保守性取代判定。 術語「細胞毒性劑」係指抑制或阻止細胞之表現活性、 細胞功能及/或促使細胞損毀的物質。此術語意欲包括放 射性同位素、化學治療劑及毒素,諸如細菌、真菌、植物 或動物來源之小分子毒素或酶促活性毒素,包括其片段 及/或變異體。細胞毒性劑之實例包括(但不限於)奥利斯塔 >丁(auristatin)、奥利斯塔、;丁 e(auristatin e)、金徽素 (auromycin)、美登醇(maytansinoid)、釔、銀、篦麻毒素 G (ricin)、麗麻毒素A鍵、康伯斯塔汀(combrestatin)、多卡 米辛(duocarmycin)、 多樂斯塔汀(dolostatin)、阿黴素 (doxorubicin)、道諾黴素(daunorubicin)、紫杉紛(taxol)、 順銘(cisplatin)、cc 1065、漠化乙旋(ethidium bromide)、 絲裂徽素(mitomycin)、依託泊苷(etoposide)、特諾波赛 (tenoposide)、長春新驗(vincristine)、長春驗 (vinblastine)、秋水仙驗(colchicine)、二經基炭疽菌素二 142769.doc •24- 201021828 _ (dihydroxy anthracin dione)、放線菌素(actinomycin)、 白喉毒素(diphtheria toxin)、綠膿桿菌外毒素 (Pseudomonas exotoxin)(PE)A、PE40、相思豆毒素 (abrin)、相思豆毒素A鏈、莫迪素A鏈(modeccin A chain)、α-帚麴菌素(alpha-sarcin)、白樹素(gelonin)、有絲 分裂素(mitogellin)、偈限麯黴素(retstrictocin)、酴黴素 (phenomycin)、伊諾黴素(enomycin)、痲瘋樹毒蛋白 (curicin)、巴豆毒素(crotin)、刺抱黴素(calicheamicin)、 肥皂草(Sapaonaria officinalis)抑制劑及糖皮質激素及其他 化學治療劑,以及放射性同位素,諸如At211、I131、I125、 Y90、Re丨86、Re188、Sm ⑸、Bi2丨2 或 Bi2丨3、p3、Lu 之放射 性同位素,包括Lu177。抗體亦可與能夠將前藥轉化為其活 性形式之抗癌前藥活化酶接合。 如本文中所使用,術語「雙功能抗體」係指具有兩個抗 原結合位點之小抗體片段,該等片段包含以同一多肽鏈 (Vh-Vl)相連接的重鏈可變域(Vh)與輕鏈可變域(Vl)。藉由 使用太短而不容許同一鏈上之兩個域之間配對的連接子, 迫使該等域與另一鏈之互補域配對且形成兩個抗原結合位 點。雙功能抗體更全面地描述於以下文獻中:例如Ep 404,097 ; WO 93/11161 ;及 Hollinger 等人,Proc. Natl Acad. Sci. USA 90:6444-48 (1993)。 「基因產物」在本文中用於表示肽/蛋白質*mRNA。舉 例而言,「本發明之基因產物」在本文中有時稱為「癌症 胺基酸序列」、「癌症蛋白質」、「表〗中所列之癌症之蛋白 142769.doc -25- 201021828 質」、「癌症mRNA」、「表所列之癌症之mRNA」等。在 -實施财’癌症蛋白質係由圖i之核酸編碼。癌症蛋白 質可為片段,或者為由圖丨之核酸編碼的全長蛋白質。在 -實施例中,癌症胺基酸序列用於判定序列—致性或相似 性。在另-實施財,該等序列為由圖k核酸編碼之蛋 白質的天然存在之對偶基因變異體。在另一實施例中,該 等序列為如本文中進一步描述之序列變異體。 異型接合」抗體可用於本發明方法及組合物。如本文 中所使用,術語「異型接合抗體」係指兩個共價連接之抗 體。該等抗體可利用合成蛋白質化學技術中之已知方法 (包括使用交聯劑)製備。參見例如美國專利第 號。 針對特定核酸或蛋白質產物之存在、不存在、量化或其 他性質的「高通量篩檢」檢定已為熟習此項技術者所熟 知。類似地,結合檢定及報導基因檢定類似地已熟知。因 此,例如美國專利第5,559,410號揭示針對蛋白質之高通量 篩檢法;美國專利第5,585,639號揭示針對核酸結合之高通 量篩檢法(亦即,排成陣列);而美國專利第5,576,220號及 第5,541,061號揭示針對配體/抗體結合之高通量_檢法。 此外,高通量篩檢系統市面有售(參見例如Amersham Biosciences, Piscataway, NJ ; Zymark Corp·, Hopkinton, MA ; Air Technical Industries, Mentor, OH ; Beckman Instruments, Inc. Fullerton, CA ; Precision Systems, Inc., Natick,MA等)。此等系統通常使全部程序自動化,包括所 142769.doc -26- 201021828 有樣本及試劑吸移、液體分配、定時培育及用適用於檢定 之偵測器對微板進行最終讀數。此等可組態系統提供高通 量且快速之起動以及高度靈活性及定製。該等系統之製造 商提供用於各種高通量系統之詳細方案。因此,例如 Zymark Corp.提供描述用於债測基因轉錄、配體結合及其 類似過程之調節之篩檢系統的技術通報。 術語「同源物」係指與另一種分子呈現同源性之分子, 例如具有在相應位置處相同或相似之化學殘基序列。 ❿ 在一實施例中,本文中所提供之抗體為「人類抗體」。 如本文中所使用,術語「人類抗體」係指其中輕鏈與重鏈 序列之整個序列(包括互補判定區(CDR))基本上來自人類 基因的抗體。在一實施例中,人類單株抗體係藉由以下技 術製備:三體瘤(trioma)技術、人類B細胞技術(參見例如 Kozbor等人,Immunol. Today 4: 72 (1983))、EBV轉型技 術(參見例如 Cole 等人 MONOCLONAL ANTIBODIES AND CANCER THERAPY 77-96 (1985))或利用嗤菌體呈現(參見 例如 Marks等人,J. Mol. Biol· 222:581 (1991))。在一特定 實施例中,在轉殖基因小鼠中產生人類抗體。製備該等部 分至完全人類抗體之技術於此項技術中已知且可使用任何 該等技術。根據一特別較佳實施例,在經工程改造以表現 人類重鏈及輕鏈抗體基因之轉殖基因小鼠中製備完全人類 抗體序列。製備可產生人類抗體之轉殖基因小鼠的例示性 說明見於申請案第WO 02/43478號及美國專利 6,657,103(Abgenix)及其後續案中。接著可將產生所要抗 142769.doc -27- 201021828 體之轉殖基因小鼠的B細胞融合以製備融合瘤細胞株,以 便連續產生抗體。參見例如美國專利第5,569,825號;第 5,625,126 號;第 5,633,425 號;第 5,661,016 號;及第 5,545,806¾^. ; AJakobovits, Adv. Drug Del. Rev. 31:33-42 (1998) ; Green等人,J· Exp. Med. 188: 483-95 (1998) ° 「人類白細胞抗原」或「HLA」為人類I類或II類主要組 織相容性複合體(MHC)蛋白質(參見例如Stites等人, IMMUNOLOGY,第 8版,Lange Publishing, Los Altos, CA (1994))。 如本文中所使用,術語「人源化抗體」係指含有來自非 人類(例如鼠科動物)抗體以及人類抗體之序列的抗體形 式。該等抗體為嵌合抗體,其含有來源於非人類免疫球蛋 白之最小序列。一般而言,人源化抗體實質上包含至少一 個且通常兩個可變域之全部,其中高變環全部或實質上全 部對應於非人類免疫球蛋白之彼等序列且FR區全部或實質 上全部為人類免疫球蛋白序列之彼等序列。人源化抗體視 需要亦包含免疫球蛋白(通常為人類免疫球蛋白)恆定區 (Fc)之至少一部分。參見例如Cabilly之美國專利第 4,816,567號;Queen等人(1989) Proc. Nat'l Acad. Sci. USA 86:10029-10033 ;及ANTIBODY ENGINEERING: A PRACTICAL APPROACH (Oxford University Press 1996) o 在聚核苷酸之上下文中所用的術語「雜交」及其類似術 語欲指習知的雜交條件,較佳諸如在50%曱醯胺/6XSSC/ 0.1% SDS/100 pg/ml ssDNA中雜交,其中雜交溫度超過 142769.doc • 28 · 201021828 37°C且在0.1XSSC/0.1% SDS中洗滌之溫度超過55〇c。 詞s吾「經分離」或「生物純」係指物質實質上或基本上 不含有當該物質以其天然狀態存在時通常附隨該物質的組 分。因此’本發明之經分離肽較佳不含有在其原始環境下 通常與該等狀相關的物質。舉例而言,當聚核苦酸實質上 與對應於或互補於除58P1D12基因外之基因或編碼除 58P1D12基因產物外之多肽或其片段的污染性聚核苷酸分 離時,稱s亥聚核苷酸「經分離」。熟習此項技術者可容易 地使用核酸分離程序獲得經分離之58P1D12聚核苦酸。舉 例而言,當使用物理、機械或化學方法將58p1D12蛋白質 自通常與蛋白質相關之細胞組分中移除時,稱該蛋白質 「經分離」。熟習此項技術者可容易地使用標準純化方法 獲得經分離之58P1D12蛋白質。或者,可藉由化學方式製 備經分離蛋白質。 適當的「標記」包括放射性核素、酶、受質、輔因子、 抑制劑、螢光部分、化學發光部分、磁性顆粒及其類似 物。教示該等標記之使用的專利包括美國專利第3,8 17,8 3 7 號;第 3,850,752號;第 3,939,350號;第 3,996,345 號;第 4,277,437號;第 4,275,149 號;及第 4,366,241號。此外, 本文中所提供之抗體可用作螢光體⑴uorob〇dy)之抗原結 合組分。參見例如 Zeytun 等人,Nat. Biotechnol. 21:1473- 79 (2003)。 術語「哺乳動物」係指歸類為哺乳動物之任何有機體, 包括小鼠、大鼠、兔、狗、貓、牛、馬及人類。在本發明 142769.doc •29- 201021828 之一實施例中,哺乳動物為小鼠。在本發明之另一實施例 中,哺乳動物為人類。 術語「轉移性癌症」及「轉移性疾病」意謂已擴散至區 域淋巴結或已擴散至遠側部位之癌症,且意欲包括依據 AUA系統之D期疾病及依據ΤΝΜ系統之ΤχΝχΜ+期疾病。 如本文中所使用之術語「調節劑」或「測試化合物」或 「候選藥物」或文法上等效之術語描述欲針對直接或間接 改變癌症表現型或癌症序列(例如核酸或蛋白質序列)表現 或癌症序列效應(例如信號轉導、基因表現、蛋白質相互Θ 作用等)之能力進行測試的任何分子,例如蛋白質、寡 肽、小有機分子、多醣、聚核苷酸等。在一態樣中,調節 劑中和本發明之癌症蛋白質之效應。「中和」意謂將蛋白 質活性以及隨之對細胞的影響抑制或阻斷。在另一態樣 中,調節劑中和本發明之基因之效應且藉由使其相應蛋白 質之含量正常化來中和該蛋白質之效應。在較佳實施例 中,調節劑改變表現概況,或本文中所提供之核酸或蛋白 質之表現概況,或下游效應物(effect〇r)途徑。在一實施例® 中,調節劑將癌症表現型抑制為例如正常組織指紋圖譜。 在另-實施例中,調節劑誘發癌症表現型。通常以不同藥 劑濃度對複數種檢定混合物進行平行試驗,以獲得針對各 種浪度之差別反應。此等濃度之—通常用作陰性對照,亦 即零濃度或偵測極限以下。 調節劑、候選藥物或測試化合物涵蓋很多化學類別但 其通常為有機分子’較佳為分子量大於⑽道爾頓(如叫 142769.doc -30· 201021828 且小於約2,500道爾頓之小有機化合物。較佳小分子小於 2000 D或小於1500 D或小於1〇〇〇 D或小於5〇〇 d。候選藥 劑包含與蛋白質之結構相互作用(尤其氫鍵結)所必需的官 能基,且通常包括至少-個胺基、幾基、經基或_基,較 佳該等化學官能基中之至少兩者。候選藥劑通常包含經一 或多個上述官能基取代之環碳或雜環結構及/或芳族或多 芳族結構。調節劑亦包含生物分子,諸如肽、醣、脂肪 酸、類固醇、嗓吟、喊哈、並h 4仏 .,,., ^ 由疋具何生物 '結構類似物或組 罾合。肽尤其較佳。-類調節劑為例如具有約5至約35個胺 基酸、較佳約5至約20個胺基酸且尤其較佳約7至約15個胺 基酸的肽。癌症調節性蛋白質較佳具有可溶性,包括非跨 膜區域及/或具有有助於溶解性末端Cys。在一實施例 中,該片段之C末端作為游離酸保持且\末端為有助於偶 聯(亦即與半胱胺酸偶聯)之游離胺。在一實施例中,本發 明之癌症蛋白質與如本文中論述的免疫原性藥劑接合。在 & 一實施射,癌症蛋白質與BSA接合。本發明之肽(例如具 有較佳長度)可彼此連接或與其他胺基酸連接以形成更長 的肽/蛋白質。調節性肽可為如上所述之天然存在之蛋白 質的消化物、隨機肽或「偏重」隨機肽。在一較佳實施例 中’基於肽/蛋白質之調節劑為如本文中所定義之抗體及 其片段。 癌症調節劑亦可為核酸。核酸調節劑可為天然存在之核 酸、隨機核酸或「偏重」隨機核酸。舉例而言,原核或真 核基因組之消化物可以類似於以上針對蛋白質所述方法的 142769.doc •31 · 201021828 方法使用。 如本文中所使用之術語「單株抗體」係指自實質上同種 抗體之群體獲得的抗體’亦即,除可少量存在可能的天然 存在突變之外’構成該群體之個別抗體一致。單株抗體具 有針對單一抗原之抗原決定基的高度特異性。相比之下, 習知(多株)抗體製劑通常包括針對(或特異於)不同抗原決 定基之多種抗體。在一實施例中,多株抗體含有複數種單 株抗體’在含有多個抗原之抗原決定基的單一乳原内該 等單株抗體具有不同的抗原決定基特異性、親和性或親和 力。修飾語「單株」表示如自實質上同種抗體聲體獲得之 抗體1的特性,且不應理解為需要藉由任何特定才法製備抗 體。舉例而言,欲根據本發明使用之單株抗體可藉由最先 由Kohler等人,Nature 256: 495 (1975)所述的融合瘤方法 製備,或可藉由重組DNA方法(參見例如美國專利第 4,8 16,567號)製備。「單株抗體」亦可利用例如以下文獻中 所述之技術自噬菌體抗體文庫中分離:Clacks 〇n等人,Stryer (Stanford University); Henikoff et al, PNAS 1992, Vol. 89, 10915-10919; Lei et al, j Biolchem, May 19, 1995; 270(20): 11882-6). Other substitutions are also permissible and may be judged on the basis of a test or in accordance with known conservative substitutions. The term "cytotoxic agent" refers to a substance that inhibits or prevents the expression of cells, the function of cells, and/or the destruction of cells. This term is intended to include radioisotopes, chemotherapeutics, and toxins, such as small molecule toxins or enzymatically active toxins, including fragments and/or variants thereof, of bacterial, fungal, plant or animal origin. Examples of cytotoxic agents include, but are not limited to, Orlista> Auristatin, Orlista, Auristatin e, auromycin, maytansinoid, 钇, silver, ricin G, ricin A, cobrastatin, duocarmycin, dolostatin, doxorubicin, Daunorubicin, taxol, cisplatin, cc 1065, etidium bromide, mitomycin, etoposide, teno Tenoposide, vincristine, vinblastine, colchicine, anthracnose II 142769.doc •24- 201021828 _ (dihydroxy anthracin dione), actinomycin (actinomycin), diphtheria toxin, Pseudomonas exotoxin (PE) A, PE40, abrin (abrin), abrin toxin A chain, modeccin A chain , alpha-sarcin, gelonin, have Mitigellin, retstrictocin, phenomycin, enomycin, curicin, crotin, calicheamicin ), Sapaonaria officinalis inhibitors and glucocorticoids and other chemotherapeutic agents, and radioisotopes such as At211, I131, I125, Y90, Re丨86, Re188, Sm (5), Bi2丨2 or Bi2丨3, Radioisotopes of p3 and Lu, including Lu177. The antibody may also be conjugated to an anti-cancer prodrug activating enzyme capable of converting the prodrug into its active form. As used herein, the term "bifunctional antibody" refers to a small antibody fragment having two antigen binding sites comprising a heavy chain variable domain (Vh) linked by the same polypeptide chain (Vh-Vl). With the light chain variable domain (Vl). By using a linker that is too short to allow pairing between the two domains on the same strand, the domains are forced to pair with the complementary domains of the other strand and form two antigen-binding sites. Bifunctional antibodies are more fully described in, for example, Ep 404,097; WO 93/11161; and Hollinger et al, Proc. Natl Acad. Sci. USA 90:6444-48 (1993). "Gene product" is used herein to mean peptide/protein* mRNA. For example, "the gene product of the present invention" is sometimes referred to herein as "cancer amino acid sequence", "cancer protein", and the protein of cancer listed in the table 142769.doc -25- 201021828" "Cancer mRNA", "mRNA of cancer listed in the table", etc. In the implementation of the 'Fruit' cancer protein line is encoded by the nucleic acid of Figure i. The cancer protein can be a fragment or a full length protein encoded by the nucleic acid of the map. In an embodiment, the cancer amino acid sequence is used to determine sequence- or similarity. In another implementation, the sequences are naturally occurring dual gene variants of the protein encoded by the nucleic acid of Figure k. In another embodiment, the sequences are sequence variants as further described herein. Heterotypic antibodies can be used in the methods and compositions of the invention. As used herein, the term "heterotypic antibody" refers to two covalently linked antibodies. Such antibodies can be prepared by methods known in the art of synthetic protein chemistry, including the use of cross-linking agents. See, for example, U.S. Patent No.. High throughput screening assays for the presence, absence, quantification or other properties of a particular nucleic acid or protein product are well known to those skilled in the art. Similarly, binding assays and reporter gene assays are similarly well known. Thus, for example, U.S. Patent No. 5,559,410 discloses high-throughput screening for proteins; U.S. Patent No. 5,585,639 discloses high-throughput screening for nucleic acid binding (i.e., arrays); and U.S. Patent No. 5,576,220 And No. 5,541,061 discloses a high throughput assay for ligand/antibody binding. In addition, high-throughput screening systems are commercially available (see, for example, Amersham Biosciences, Piscataway, NJ; Zymark Corp., Hopkinton, MA; Air Technical Industries, Mentor, OH; Beckman Instruments, Inc. Fullerton, CA; Precision Systems, Inc. ., Natick, MA, etc.). These systems typically automate all procedures, including 142769.doc -26- 201021828 with sample and reagent pipetting, liquid dispensing, timing incubation, and final reading of the microplate with a detector suitable for assay. These configurable systems offer high throughput and fast start-up as well as a high degree of flexibility and customization. Manufacturers of these systems offer detailed solutions for a variety of high-throughput systems. Thus, for example, Zymark Corp. provides a technical bulletin describing a screening system for the regulation of debt detection, ligand binding, and the like. The term "homolog" refers to a molecule that exhibits homology to another molecule, for example, a sequence of chemical residues that are identical or similar at the corresponding positions. In one embodiment, the antibody provided herein is a "human antibody." As used herein, the term "human antibody" refers to an antibody in which the entire sequence of the light and heavy chain sequences, including the complementarity determining regions (CDRs), is substantially derived from a human gene. In one embodiment, a human monoclonal antibody system is produced by the following techniques: trioma technology, human B cell technology (see, eg, Kozbor et al, Immunol. Today 4: 72 (1983)), EBV transformation technology (See, for example, Cole et al. MONOCLONAL ANTIBODIES AND CANCER THERAPY 77-96 (1985)) or presented using sputum bacteria (see, eg, Marks et al, J. Mol. Biol. 222: 581 (1991)). In a specific embodiment, a human antibody is produced in a transgenic mouse. Techniques for preparing such portions to fully human antibodies are known in the art and any such techniques can be used. According to a particularly preferred embodiment, a fully human antibody sequence is produced in a transgenic mouse engineered to express human heavy and light chain antibody genes. An exemplary description of the preparation of a transgenic mouse that produces a human antibody can be found in application No. WO 02/43478 and U.S. Patent 6,657,103 (Abgenix) and its succession. B cells which produce a transgenic mouse which is intended to be resistant to 142769.doc -27-201021828 can then be fused to prepare a fusion tumor cell line for continuous production of antibodies. See, for example, U.S. Patent Nos. 5,569,825; 5,625,126; 5,633,425; 5,661,016; and 5,545,8063⁄4^.; AJakobovits, Adv. Drug Del. Rev. 31:33-42 (1998); J. Exp. Med. 188: 483-95 (1998) ° "Human leukocyte antigen" or "HLA" is a human class I or class II major histocompatibility complex (MHC) protein (see, for example, Stites et al. IMMUNOLOGY, 8th ed., Lange Publishing, Los Altos, CA (1994)). As used herein, the term "humanized antibody" refers to an antibody form comprising sequences from non-human (e.g., murine) antibodies as well as human antibodies. Such antibodies are chimeric antibodies which contain minimal sequences derived from non-human immunoglobulins. Generally, a humanized antibody comprises substantially all of at least one and usually two variable domains, wherein the hypervariable loops all or substantially all correspond to the sequence of the non-human immunoglobulin and the FR regions are all or substantially All are their sequences of human immunoglobulin sequences. The humanized antibody also includes at least a portion of an immunoglobulin (typically a human immunoglobulin) constant region (Fc), as desired. See, for example, Cabilly, U.S. Patent No. 4,816,567; Queen et al. (1989) Proc. Nat'l Acad. Sci. USA 86:10029-10033; and ANTIBODY ENGINEERING: A PRACTICAL APPROACH (Oxford University Press 1996) o in nucleosides The term "hybridization" and the like in the context of acid are intended to refer to conventional hybridization conditions, preferably such as hybridization in 50% guanamine/6XSSC/0.1% SDS/100 pg/ml ssDNA, wherein the hybridization temperature exceeds 142769.doc • 28 · 201021828 The temperature at 37 ° C and washed in 0.1XSSC/0.1% SDS exceeds 55〇c. The word "isolated" or "biologically pure" means that the substance is substantially or substantially free of components that normally accompany the substance when it is in its natural state. Thus, the isolated peptide of the present invention preferably does not contain materials which are normally associated with such identities in its original environment. For example, when the polynucleic acid is substantially separated from a contaminating polynucleotide corresponding to or complementary to a gene other than the 58P1D12 gene or a polypeptide encoding a polypeptide other than the 58P1D12 gene product or a fragment thereof, Glycosylates are "isolated." Those skilled in the art can readily obtain isolated 58P1D12 polynucleic acid using a nucleic acid isolation procedure. For example, a protein is said to be "isolated" when it is physically, mechanically or chemically removed from the cellular components normally associated with the protein. Those skilled in the art can readily obtain the isolated 58P1D12 protein using standard purification methods. Alternatively, the isolated protein can be prepared chemically. Suitable "markers" include radionuclides, enzymes, substrates, cofactors, inhibitors, fluorescent moieties, chemiluminescent moieties, magnetic particles and the like. Patents that teach the use of such indicia include U.S. Patent Nos. 3,817,8,7, 3,850,752, 3,939,350, 3,996,345, 4,277,437, 4,275,149, and 4,366,241. Furthermore, the antibodies provided herein can be used as an antigen binding component of the phosphor (1) uorob〇dy). See, for example, Zeytun et al., Nat. Biotechnol. 21:1473-79 (2003). The term "mammal" refers to any organism classified as a mammal, including mice, rats, rabbits, dogs, cats, cows, horses, and humans. In one embodiment of the invention 142769.doc • 29-201021828, the mammal is a mouse. In another embodiment of the invention, the mammal is a human. The terms "metastatic cancer" and "metastatic disease" mean a cancer that has spread to a regional lymph node or has spread to a distal site, and is intended to include a stage D disease according to the AUA system and a ΤχΝχΜ+ stage disease according to the sputum system. The term "modulator" or "test compound" or "candidate drug" or grammatically equivalent terms as used herein is intended to directly or indirectly alter the expression of a cancer phenotype or cancer sequence (eg, a nucleic acid or protein sequence) or Any molecule that has the ability to test for cancer sequence effects (eg, signal transduction, gene expression, protein interaction, etc.), such as proteins, oligopeptides, small organic molecules, polysaccharides, polynucleotides, and the like. In one aspect, the modulator neutralizes the effects of the cancer protein of the invention. "Neutralization" means inhibiting or blocking the activity of the protein and its subsequent effects on the cell. In another aspect, the modulator neutralizes the effect of the gene of the invention and neutralizes the effect of the protein by normalizing the content of the corresponding protein. In a preferred embodiment, the modulator alters the performance profile, or the performance profile of the nucleic acid or protein provided herein, or the downstream effector pathway. In an embodiment, the modulator inhibits cancer phenotype to, for example, a normal tissue fingerprint. In another embodiment, the modulator induces a cancer phenotype. A plurality of assay mixtures are typically tested in parallel at different drug concentrations to obtain differential responses for various waves. These concentrations are usually used as negative controls, ie below the zero concentration or detection limit. Modulators, drug candidates or test compounds encompass many chemical classes but are typically organic molecules 'preferably small organic compounds having a molecular weight greater than (10) Daltons (eg, 142769.doc -30.201021828 and less than about 2,500 Daltons). Preferably, the small molecule is less than 2000 D or less than 1500 D or less than 1 〇〇〇 D or less than 5 〇〇 d. The candidate agent comprises functional groups necessary for structural interaction (especially hydrogen bonding) with the protein, and usually includes at least Or an amine group, a benzyl group, a thio group or a hydryl group, preferably at least two of the chemical functional groups. The candidate agent typically comprises a ring carbon or heterocyclic ring structure substituted with one or more of the above functional groups and/or Aromatic or polyaromatic structure. Modulators also contain biomolecules such as peptides, sugars, fatty acids, steroids, sputum, shouting, and h 4仏.,,., ^ Preferably, the peptide is particularly preferred. The class-modulating agent is, for example, having from about 5 to about 35 amino acids, preferably from about 5 to about 20 amino acids, and particularly preferably from about 7 to about 15 amino acids. Peptide. Cancer regulatory protein is preferably soluble, including Non-transmembrane regions and/or have a soluble terminal Cys. In one embodiment, the C-terminus of the fragment is maintained as a free acid and the end is conjugated (ie, coupled to cysteine) a free amine. In one embodiment, the cancer protein of the invention is conjugated to an immunogenic agent as discussed herein. In & one, the cancer protein is conjugated to BSA. The peptide of the invention (e.g., preferably The lengths can be linked to each other or to other amino acids to form longer peptides/proteins. The regulatory peptide can be a digest, a random peptide or a "heavier" random peptide of a naturally occurring protein as described above. In a preferred embodiment, the peptide/protein based modulator is an antibody and fragment thereof as defined herein. The cancer modulator may also be a nucleic acid. The nucleic acid modulator may be a naturally occurring nucleic acid, a random nucleic acid or a "heavy" random nucleic acid. For example, the digest of the prokaryotic or eukaryotic genome can be used analogously to the method described above for the method of protein 142769.doc • 31 · 201021828. As used herein, the term “ "Strain" refers to an antibody obtained from a population of substantially the same antibody 'that is, in addition to a small number of possible naturally occurring mutations, 'the individual antibodies that make up the population are identical. The monoclonal antibody has an epitope against a single antigen. Highly specific. In contrast, conventional (multiple) antibody preparations typically include multiple antibodies directed against (or specific for) different epitopes. In one embodiment, multiple antibodies contain multiple monoclonal antibodies' The monoclonal antibodies have different epitope specificity, affinity or affinity in a single lactogen containing multiple antigenic epitopes. The modifier "single plant" means obtained from substantially the same antibody sound. The nature of antibody 1 and should not be construed as requiring preparation of the antibody by any particular method. For example, a monoclonal antibody to be used in accordance with the present invention can be prepared by the fusion tumor method first described by Kohler et al, Nature 256: 495 (1975), or by recombinant DNA methods (see, for example, US patents) Preparation No. 4, 8 16, 567). "Single antibody" can also be isolated from a phage antibody library using, for example, the techniques described in Clacks 〇n et al.
Nature 352: 624-628 (1991)及 Marks 等人,j. Mol. Bi〇1 222: 581-597 (1991)。如一般藉由ELISA所測定,此等單 株抗體一般以至少約1 μΜ、更一般至少約3〇〇 、通常 至少約30 nM、較佳至少約1〇 nM、更佳至少約3 nM或更 佳之Kd結合。 「基元」(如58P1D12相關蛋白質之生物學基沅中)係指 形成以下序列之部分的任何胺基酸型式:與特交功能(例 如蛋白質-蛋白質相互作用、蛋白f_DNA相互作用等)或修 142769.doc •32- 201021828 飾(例如磷酸化、糖基化或醯胺化)或定位(例如分泌序列、 核定位序列等)相關之蛋白質之一級序列,或與存在免疫 原性(體液或細胞)相關之序列。基元可B比連或能夠與某些 位置對齊’該等位置通常與某種功能或特性相關。在HLa 基元之上下文中,「基元」係指由特定HLA分子識別之具 有指定長度之肽(對於I類HLA基元而言,通常為具有約8至 約13個胺基酸之肽;且對於η類hl A基元而言,通常為具 有約6至約25個胺基酸之肽)中的殘基型式。對於由各種人 ® 類hla等位基因編碼之各種蛋白質,供HLA結合的肽基元 通常不相同,且一級錨定殘基及二級錨定殘基之型式有所 不同。表V中列出經常出現之基元。 「醫藥賦形劑」包含諸如佐劑、載劑、pH值調節劑及緩 衝劑、張力調節劑、濕潤劑 '防腐劑及其類似藥劑之物· 質。 「醫藥學上可接受」係指無毒、惰性及/或在生理上與 _ 人類或其他哺乳動物相容的組合物。 術語「聚核苷酸」意謂長度為至少1〇個鹼基或鹼基對之 核苷酸(核糖核苷酸或去氧核苷酸或任一類核苷酸之經修 飾形式)之聚合形式,且意欲包括DNA及/或RNA之單股形 式及雙股形式。在此項技術中,此術語通常可與「寡核苷 酸J互換使用。聚核苷酸可包含本文中所揭示之核苷酸序 列,其中例如圖1所示的胸苷(丁)亦可為尿嘧啶(u);此定義 和DNA與RNA之化學結構之間的差異有關,尤其與以下觀 測結果有關·· RNA中之四個主要鹼基之一為尿嘧啶(切而 142769.doc •33· 201021828 非胸苷(τ)。 術語「多肽」意謂具有至少約4、5、6、7或8個胺基酸 之聚合物。在整篇說明書中,使用胺基酸之標準三字母或 單子母名稱。在此項技術中,此術語通常可與「肽」或 「蛋白質」互換使用。 HLA 級錯疋殘基」為沿著肽序列位於特定位置處的 胺基酸,此應理解為在免疫原性肽與HLA分子之間提供接 觸點。對於免疫原性肽,在具有指定長度之肽内,一至三 個(通常兩個)一級錨定殘基定義「基元」。此等殘基應理解 為與HLA分子之肽結合凹槽緊密接觸配合,其側鏈掩埋於 結合凹槽之特定袋囊内。在一實施例中,例如,1類hla 分子之一級錨定殘基位於本發明之8、9、1〇、η或12殘基 肽抗原決定基之位置2(相對於胺基末端位置)及羧基末端位 置。或者,在另一實施例中,結合Η類HLA分子之肽之一 級錫疋殘基彼此間隔,而不是與肽末端相間隔,其中該肽 之長度一般為至少9個胺基酸。各基元及超基元之一級錯 位列於表IV(a)中。舉例而言,類似肽可藉由改變表IV中 所不之一級及/或二級錨位中之特定殘基的存在或不存在 來形成。該等類似物用於調節包含特定HLA基元或超基元 之肽之結合親和性及/或群體覆蓋率。 「放射性同位素」包括(但不限於)下列放射性同位素(非 限制性例示性用途亦列於表IV(I)中)。 如本文中針對核酸及蛋白質使用的「隨機化」或文法等 效術s吾意5胃各核酸及肽分別由基本上隨機之核苦酸及胺基 142769.doc 34· 201021828 酸組成。此等隨機肽(或核酸,如本文中論述)可在任何位 置併有任何核苦酸或胺基酸。合成方法可經設計以產生隨 機化蛋白質或核酸,以容許形成具有全部序列長度之全部 或大部分可能組合,從而形成隨機化候選蛋白質生物活性 劑之文庫。 在實施例中,文庫為「完全隨機化」,在任何位置均 不存在序列偏好或恆定。在另一實施例中,文庫為「偏重 隨機」文庫。亦即,序列内的有些位置保持恆定,或選自 有限量之可能性。舉例而言,核苷酸或胺基酸殘基在限定 類別内隨機化,例如疏水性胺基酸、親水性殘基、空間偏 重(小或大)殘基、偏向形成核酸結合域、形成半胱胺酸(對 於父聯)、脯胺酸(對於SH-3域)、絲胺酸、蘇胺酸、路胺酸 或組胺酸(對於鱗酸化位點)等,或形成嘌呤等。 「重組」DNA或RNA分子為已受到活體外分子操控之 DNA或RNA分子。 如本文中所使用,術語「單鏈Fv」或r scFv」或「單 鏈」抗體係指包含抗體之VH域及VL域的抗體片段,其中此 等區域存在於單一多肽鏈中。Fv多肽一般進一步包含VH域 與VL域之間的多肽連接子,該多肽連接子能夠使sFv形成 用於抗原結合之所要結構。欲回顧sFv,參見Pluckthun, THE PHARMACOLOGY OF MONOCLONAL ANTIBODIES, 113 卷 ’ Rosenburg 及 Moore 編,Springer-Verlag, New York,第 269-315 頁(1994)。 「小分子」之非限制性實例包括結合58P1D12或與 142769.doc -35- 201021828 58P1D12相互作用之化合物、結合且較佳抑制581>1〇12蛋 白質功能之配體,包括激素、神經肽、趨化因子、氣味 劑、麟脂及其功能等效物。該等非限制性小分子較佳具有 小於約10 kDa、更佳低於約9 kDa、約8 kDa、約7 kDa、約 6 kDa、約5 kDa或約4 kDa之分子量。在某些實施例中, 在物理上與58P1D12蛋白質關聯或結合58P1D12蛋白質的 小分子未見於天然存在之代謝途徑中;及/或在水溶液中 比在非水性溶液中更易溶解。 如本文中所使用,術語「特異性」係指抗體選擇性結合 標把抗原之抗原決定基。藉由對抗體在一組給定條件下與 適备抗原之結合和與無關抗原或抗原混合物之結合進行比 較來測s式抗體之結合特異性。若抗體與適當抗原之結合比 抗體與無關抗原或抗原混合物之結合大至少2倍、5倍、7 倍及較佳10倍,則其視為具有特異性。在一實施例中,特 異性抗體為僅結合58P1D12抗原、但不結合無關抗原之抗 體。在另一實施例中,特異性抗體為結合人類58P1D12抗 原、但不結合與該58P1D12抗原具有70%、75%、80%、 85%、90%、91%、92%、93%、94%、95%、96%、97%、 9 8°/。、99°/。或99%以上之胺基酸同源性之非人類58P1D12抗 原的抗體。在另一實施例中,特異性抗體為結合人類 58P1D12抗原且結合鼠科動物58P1D12抗原、但與人類抗 原具有更高結合程度的抗體。在另一實施例中,特異性抗 體為結合人類58P1D12抗原且結合靈長類動物58P1D12抗 原、但與人類抗原具有更高結合程度的抗體。在另一實施 142769.doc -36- 201021828 及任何非人類 之結合程度更 例中,特異性抗體結合人類58P1D12抗原 58P1D12抗原,但與人類抗原或其任何組合 南0 雜交反應之「嚴格性」易於由—般技術者判定,且一般 為視探針長度、洗務溫度及鹽濃度而定的經驗計算。一般 而言,探針愈長,則適當黏接所需要的溫度愈高,而探針 愈短,則需要的溫度愈低。當互補股存在於低於其炼融溫 度之環境下_,雜冑反應一般視變性核酸序列再黏接的能 力而定。探針與可雜交序列之間的所要同源度愈高,則可 使用的相對溫度愈高。因此,較高相對溫度勢必使得反應 條件更嚴格,而較低溫度卻不然。有關雜交反應之嚴格性 之其他細節及解釋,參見Ausubel等人,Current Pr〇t〇c〇ls in Molecular Biology, Wiley Interscience Publishers, (1995)。 如本文中所定義之「嚴格條件」或「高嚴格性條件」係 0 如下(但不限於)鑑別:(1)洗滌時使用低離子強度及高溫, 例如在50°C下使用0.015 Μ氯化鈉/0.0015 Μ檸檬酸鈉/0.1% 十二烷基硫酸鈉;(2)在雜交期間,在42°C下將變性劑(諸 如甲醯胺,例如50%(v/v)甲醯胺)與〇.1〇/0牛血清白蛋白/ 0.1°/。Ficoll/〇.l%聚乙烯吡咯啶酮/5〇 mM磷酸鈉緩衝液(pH 6.5)及750 mM氣化鈉、75 mM檸檬酸鈉一起使用;或(3)在 42°C下使用 50%曱醯胺、5xSSC(0.75 M NaCl、0.075 Μ檸 檬酸鈉)、50 mM填酸納(pH 6.8)、0.1%焦鱗酸納、5χ登哈 特氏溶液(Denhardt's solution)、經超音處理之鮭魚精 142769.doc -37· 201021828 DNA(50 pg/ml)、0.1% SDS及 10%硫酸葡聚糖,在 42°C 下 於0.2xSSC(氯化鈉/檸檬酸納)中洗務且在55°C下於50%甲 醯胺中洗滌,接著在55°C下進行由含有EDTA之O.lxSSC組 成的高嚴格性洗浪。「中等嚴格條件」描述於(但不限 於)Sambrook 等九,Molecular Cloning: A Laboratory Manual, New York : Cold Spring Harbor Press, 1989 中,且 包括使用嚴格性tb上述條件更小的洗滌溶液及雜交條件 (例如溫度、離子強度及% SDS)。中等嚴格條件之一實例 為在65°C下於包含以下各物之溶液中隔夜培育:1%牛血清 白蛋白、0.5 M# 酸鈉(pH 7.5)、1·25 mM EDTA 及 7% SDS/5xSSC(150 m M NaCl、1 5 mM檸檬酸三鈉),接著在 50°C下於2xSSC/l % SDS中洗滌過濾器且在50°C下於 0.2xSSC/0.1% SDS中洗滌過濾器。熟習此項技術者應瞭解 如何視需要調整溫度、離子強度等以適應諸如探針長度及 其類似因素之因素。 HL A「超基元」為由兩個或兩個以上HL A等位基因編碼 之HLA分子所共有的肽結合特異性。不同種群之HLA超型 (supertype)之總體表現型出現率列於表IV (f)中。各種超型 之非限制性組分如下所示: A2 : A*0201、A*0202、A*0203、A*0204、A*0205、 A*0206 ' A*6802、A*6901、A*0207 A3 : A3 、 All 、 A31 、 A*3301 、 A*6801 、 A*0301 、 A*1101 、 A*3101 B7 : B7 、 B*3 501-03 、 B*51 、 B*5301 、 B*5401 、 142769.doc -38- 201021828 B*5501 、 B*5502 、 B*5601 、 B*6701 、 B*7801 、 B*0702 、 B*5101 ' 6^5602 B44 : B*3701 、 B*4402 、 B*4403 、 B*60 (B*4001)、 B61 (B*4006) A1 : A*〇l〇2、A*2604、A*3601、A*4301、A*8001 A24 : A*24 、 A*30 、 A*2403 、 A*2404 、 A*3002 、 A*3003 B27 : B*1401-02、B* 1503、B*1509、B*1510、 ® B*1518 、 B*3801-02 、 B*3901 、 B*3902 、 B*3903-04 、 B*4801_02 、 B*7301 、 B*2701_〇8 B58 : B*1516、B*1517、B*5701、B*5702、B58 B62 : B*4601、B52、B*1501 (B62)、B*1502 (B75)、 B*1513 (B77) 藉由不同HLA超型組合所得到之群體覆蓋率計算值列於 表 IV(g)$。 ® 文所使用,「治療」或「治療性」及文法相關術 語係指任何疾病後果之任何改良,諸如存活期延長、發病 率減小及/或作為替代治療形式之副產物的副作用減輕; 此項技術中易瞭解,m全根治雖非治療行為之要 求,但為較佳的。 因物」(例如小鼠或大鼠)為具有含有轉殖基 = =、’:轉殖基因在動物出生前(例如胚胎期) =或動物祖先中。「轉瘦基因」為 基因動物之細胞之基因組内的DNAe J42769.doc -39- 201021828 如本文中所使用,HLA或細胞免疫反應「疫苗」為含有 或編碼一或多個本發明之肽的組合物。該等疫苗存在多種 實施例’諸如一或多個個別肽之混合物;多抗原決定基狀 所包含之一或多個本發明之肽;或編碼該等個別肽或多狀 之核酸’例如編碼多抗原決定基肽之小基因。「一或多個 肽」可包括1 -15 0或1 5 0以上之任何整計數單位整數,例如 至少2、3、4、5、6、7、8、9、10、11、12、13、14、 15、16、17、18、19、20、21、22、23、24、25、26、 27 、 28 、 29 、 30 、 31 、 32 、 33 、 34 、 35 、 36 、 37 、 38 、 39、40、41、42、43、44、45、46、47、48、49、50、 55、60、65、70、75、8〇、85、9〇、%、ι〇〇、1〇5、 110、115、120、125、130、135、140、145 或 150個或 15〇 個以上本發明之肽。肽或多肽視需要可經修飾,諸如脂質 化添加靶向序列或其他序列。本發明之〗類HLA肽可與π 類HLA肽混合或連接,以有助於活化細胞毒性了淋巴細胞 與輔助性T淋巴細胞。HLA疫苗亦可包含經狀脈衝標記之 抗原呈現細胞,例如樹突狀細胞。 術語「變異體」係、指與所述類型或正常型呈現變異的分 子,諸如在具體描述之蛋白質(例如圖1中所示之58P1D12 蛋白質)之相應位置中且右一 ,、有戍多個不同胺基酸殘基的蛋 白質。類似物為變異體蛋白質 访社η丄* n 〇 Ά ^ 貫例。勢接同功異型物 及單-核普酸多態型(SNm變異體之其他實例。 本發明之「58P1D12相關蛋白皙6』丄丄 «贫白貝」包括本文中具體鑑別 之彼等蛋白質,以及可遵猫太今士 』遷循本文中所述方法或此項技術中 142769.doc 201021828 易於利用之方法加以分離/產生及表徵而不經由不當實驗 的對偶基因變異體、保守性取代變異體、類似物及同源 物。亦包括組合不同58P1D12蛋白質或其片段之部分的融 合蛋白質’以及58P1D12蛋白質與異源多肽之融合蛋白 質。該等58P1D12蛋白質統稱為58P1D12相關蛋白質、本 發明之蛋白質或58P1D12。術語「58P1D12相關蛋白質」 係指具有4、5、6、7、8、9、10、11' 12、13、14、15、 16、17、18 ' 19、20、21、22、23、24、25或 25個以上胺 ❹基酸之多肽片段或58P1D12蛋白質序列;或具有至少3〇、 35、40、45、50、55、60、65、70、80、85、90、95、 100 、 105 、 110 、 115 、 120 、 125 、 130 、 135 、 140 、 145 、 150 、 155 、 160 、 165 、 170 、 175 、 180 、 185 、 190 、 195 、 200、225、250、273、300或300個以上胺基酸之多肽片段 或58P1D12蛋白質序列。 II.) 58P1D12聚核苷酸 _ 本發明之一態樣提供與58P1D12基因、mRNA及/或編碼 序列之全部或部分一致或互補、較佳為經分離形式的聚核 苷酸,包括編碼58P1D12相關蛋白質及其片段、〇ΝΑ、 RNA、DNA/RNA雜交體及相關分子的聚核苷酸;與 58P1D12基因或mRNA序列或其一部分互補的聚核苷酸或 寡核苷酸;及與58P1D12基因、mRNA雜交或與編碼 5 8P1D12之聚核苷酸雜交的聚核苷酸或募核苷酸(統稱 「58P1D12聚核苷酸」)。在本章節所提及之所有情形下, T亦可為圖1中之U。 142769.doc -41· 201021828 58P1D12聚核苷酸之實施例包括:具有如圖1中所示之 序列(如圖1中所示、其中T為U之58P1D12之核苷酸序列)的 58P1D12聚核苷酸;具有如圖1中所示之序列之聚核苷酸的 至少10個此連核苦酸;或具有如圖1中所示之序列、其中T 為U之聚核苷酸的至少1〇個毗連核苦酸。 編碼58P 1D12蛋白質之相對較長部分的聚核苷酸亦屬於 本發明之範内。舉例而言,編碼如圖1或圖3中所示之 58P1D12蛋白質或「變異體」之約胺基酸丨(或2〇或30或40 等)至約胺基酸20(或30或40或50等)的聚核苷酸可藉由此項 技術中熟知之多種技術產生。此等聚核苷酸片段可包括如 圖1中所示之58P1D12序列之任何部分。 ΙΙ·Α·) 5 8P1D12聚核苷酸之用途 ΙΙ.Α.1監測遺傳異常 前述段落之聚核苷酸具有多種不同特定用途。人類 58P1D12基因定位於題為「58P1D12之染色體定位」之實 例中所闡明的染色體位置中。舉例而言,由於58ρ丨D丨2基 因定位於此染色體中,因此使用編碼58P1D12蛋白質之不 同區域的聚核苷酸來判別此染色體位置處之細胞遺傳異 常’諸如鐘別與各種癌症相關之異常。在某些基因中,多 種染色體異常(包括重排)經鑑別為多種不同癌症中頻繁出 現之細胞遺傳異常(參見例如Krajinovic等人,Mutat. Res. 382(3-4): 81-83 (1998) ; Johansson等人,Blood 86(1〇). 3905-3914 (1995)及 Finger 等人,Ρ·Ν.A.S. 85(23): 9158- 9162 (1988))。因此,編碼58P1D12蛋白質之特定區域的聚 142769.doc -42- 201021828 核苷酸提供新穎工具,使用該等工具可以比先前可能之準 確度提供更大的準確度,將編碼58P1D12之染色體區域中 可能導致惡性表現型的細胞遺傳異常描繪出來。在此種情 況中,此等聚核苷酸符合此項技術中對擴大染色體篩檢之 靈敏性以便鑑別更隱蔽且不常見之染色體異常的要求(參 見例如Evans等人,Am. J. Obstet. Gynecol 171(4): 1055-1057 (1994))。 此外,由於已證明58P1D12高度表現在卵巢癌及其他癌 症中,因此可在評估正常組織對比癌變組織中之58p1Dl2 基因產物之狀態的方法中使用58P1D12聚核苷酸。通常使 用編碼58P1D12蛋白質之特定區域的聚核苷酸評估 58P1D12基因之特定區域(諸如含有一或多個基元之區域) 中是否存在變動(諸如缺失、插入、點突變或引起抗原減 少之改變等)。例示性檢定包括RT_PCR檢定與單股構形多 態性(SSCP)分析(參見例如Marrogi等人,J. Cutan. Pathol. φ 26 (8): 369-378 (1999)) ’此兩者皆使用編碼蛋白質之特定 區域的聚核苷酸檢查蛋白質内之此等區域。 II.A.2反義實施例Nature 352: 624-628 (1991) and Marks et al, j. Mol. Bi〇1 222: 581-597 (1991). Such monoclonal antibodies are typically at least about 1 μΜ, more typically at least about 3 μM, usually at least about 30 nM, preferably at least about 1 μM, more preferably at least about 3 nM, or more, as determined by ELISA. Good Kd combination. "primitive" (eg, in the biological basis of the 58P1D12-related protein) refers to any amino acid form that forms part of the sequence: interaction with a specific function (eg, protein-protein interaction, protein f_DNA interaction, etc.) or repair 142769.doc •32- 201021828 A sequence of proteins associated with (eg, phosphorylation, glycosylation, or guanidine) or localization (eg, secretory sequences, nuclear localization sequences, etc.), or with the presence of immunogenicity (corporeal fluid or cells) ) related sequences. Primitives may be B-connected or capable of being aligned with certain locations. These locations are typically associated with a certain function or characteristic. In the context of an HLa motif, "primitive" refers to a peptide of a specified length that is recognized by a particular HLA molecule (typically a peptide having from about 8 to about 13 amino acids for a class I HLA motif; And for the η-type hl A motif, it is typically a residue pattern in a peptide having from about 6 to about 25 amino acids. For various proteins encoded by various human ® hla alleles, the peptide motifs for HLA binding are generally different, and the patterns of primary anchor residues and secondary anchor residues vary. The frequently occurring primitives are listed in Table V. "Pharmaceutical excipients" include substances such as adjuvants, carriers, pH adjusters and buffers, tonicity regulators, wetting agents, preservatives and the like. "Pharmaceutically acceptable" means a composition that is non-toxic, inert, and/or physiologically compatible with humans or other mammals. The term "polynucleotide" means a polymeric form of a nucleotide of at least 1 base or base pair (a modified form of a ribonucleotide or a deoxynucleotide or a nucleotide of either type). And is intended to include both single-stranded and double-stranded forms of DNA and/or RNA. In the art, the term is generally used interchangeably with "oligonucleotide J. Polynucleotides may comprise the nucleotide sequences disclosed herein, wherein, for example, thymidine (D) as shown in Figure 1 may also be used. Is uracil (u); this definition is related to the difference between the chemical structure of DNA and RNA, especially related to the following observations. · One of the four major bases in RNA is uracil (cut 142769.doc • 33· 201021828 Non-thymidine (τ). The term "polypeptide" means a polymer having at least about 4, 5, 6, 7 or 8 amino acids. Throughout the specification, the standard three-letter of amino acid is used. Or the name of the single parent. In this technique, the term is usually used interchangeably with "peptide" or "protein." HLA-ordered 疋 residue is an amino acid located at a specific position along the peptide sequence, which should be understood. To provide a point of contact between the immunogenic peptide and the HLA molecule. For immunogenic peptides, one to three (usually two) primary anchor residues define a "primary element" within a peptide of a specified length. Residues are understood to be in close contact with the peptide-binding groove of the HLA molecule. The side chain is embedded in a specific pocket of the binding groove. In one embodiment, for example, a class 1 anchoring residue of a class 1 hla molecule is located at a peptide antigen of 8, 9, 1 , η or 12 residues of the invention. The position of the base 2 (relative to the position of the terminal end of the amine) and the position of the terminal of the carboxy group are determined. Alternatively, in another embodiment, the tin sulfonium residue of the peptide which binds to the steroidal HLA molecule is spaced apart from each other, rather than the end of the peptide. Wherein the peptide is generally at least 9 amino acids in length. One of the motifs and one of the supermotifs is listed in Table IV(a). For example, a similar peptide can be altered by changing the values in Table IV. The presence or absence of a particular residue in the primary and/or secondary anchor sites is used to modulate the binding affinity and/or population coverage of a peptide comprising a particular HLA motif or supermotif. "Radioisotopes" include, but are not limited to, the following radioisotopes (non-limiting exemplary uses are also listed in Table IV (I)). As used herein, "randomization" or grammatical equivalence for nucleic acids and proteins. I have a substantially random nucleus Acids and Amines 142769.doc 34· 201021828 Acid Composition. These random peptides (or nucleic acids, as discussed herein) can be in any position and have any nucleotide or amino acid. Synthetic methods can be designed to generate randomization Protein or nucleic acid to allow formation of all or most of the possible combinations of all sequence lengths to form a library of randomized candidate protein bioactive agents. In the examples, the library is "completely randomized" and does not exist at any position The sequence is preferred or constant. In another embodiment, the library is a "frequently random" library. That is, some positions within the sequence remain constant, or are selected from a limited number of possibilities. For example, nucleotides or amine groups Acid residues are randomized within a defined class, such as hydrophobic amino acids, hydrophilic residues, spatially biased (small or large) residues, biased to form nucleic acid binding domains, form cysteine (for paternal associations), Amine acid (for SH-3 domain), serine acid, threonine, glutamic acid or histidine (for sulphation sites), etc., or formation of hydrazine or the like. A "recombinant" DNA or RNA molecule is a DNA or RNA molecule that has been manipulated by an in vitro molecule. As used herein, the term "single-chain Fv" or "r scFv" or "single-chain" anti-system refers to antibody fragments comprising the VH domain and the VL domain of an antibody, wherein such regions are present in a single polypeptide chain. The Fv polypeptide typically further comprises a polypeptide linker between the VH domain and the VL domain which enables the sFv to form the desired structure for antigen binding. For a review of sFv, see Pluckthun, THE PHARMACOLOGY OF MONOCLONAL ANTIBODIES, 113, ed., Rosenburg and Moore, Springer-Verlag, New York, pp. 269-315 (1994). Non-limiting examples of "small molecules" include compounds that bind to 58P1D12 or interact with 142769.doc-35-201021828 58P1D12, ligands that bind to and preferably inhibit 581>1〇12 protein functions, including hormones, neuropeptides, and tendencies. Chemical factors, odorants, linoleum and their functional equivalents. Preferably, the non-limiting small molecules have a molecular weight of less than about 10 kDa, more preferably less than about 9 kDa, about 8 kDa, about 7 kDa, about 6 kDa, about 5 kDa, or about 4 kDa. In certain embodiments, small molecules that are physically associated with or bind to the 58P1D12 protein are not found in naturally occurring metabolic pathways; and/or are more soluble in aqueous solutions than in non-aqueous solutions. As used herein, the term "specificity" refers to an antibody that selectively binds to an antigenic epitope of a target antigen. The binding specificity of the s-type antibody is determined by comparing the binding of the antibody to a suitable antigen under a given set of conditions and binding to an unrelated antigen or mixture of antigens. A binding of an antibody to an appropriate antigen is considered to be specific if it is at least 2-fold, 5-fold, 7-fold, and preferably 10-fold greater than the binding of the antibody to an unrelated antigen or mixture of antigens. In one embodiment, the specific antibody is an antibody that binds only to the 58P1D12 antigen but does not bind to an unrelated antigen. In another embodiment, the specific antibody is 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94% bound to the human 58P1D12 antigen but not bound to the 58P1D12 antigen. 95%, 96%, 97%, 9 8°/. , 99°/. Or an antibody to a non-human 58P1D12 antigen having 99% or more amino acid homology. In another embodiment, the specific antibody is an antibody that binds to the human 58P1D12 antigen and binds to the murine 58P1D12 antigen but has a higher degree of binding to the human antigen. In another embodiment, the specific antibody is an antibody that binds to the human 58P1D12 antigen and binds to the primate 58P1D12 antigen but has a higher degree of binding to the human antigen. In another embodiment, 142769.doc-36-201021828 and any non-human binding degree, the specific antibody binds to the human 58P1D12 antigen 58P1D12 antigen, but the "stringency" of the hybridization reaction with the human antigen or any combination thereof is easy. It is generally determined by the average technician and is empirically calculated based on the length of the probe, the temperature of the wash, and the salt concentration. In general, the longer the probe, the higher the temperature required for proper bonding, and the shorter the probe, the lower the temperature required. When the complementary strands are present below their refining temperature, the rhododendron reaction is generally dependent on the ability of the denatured nucleic acid sequence to re-adhere. The higher the desired degree of homology between the probe and the hybridizable sequence, the higher the relative temperature that can be used. Therefore, higher relative temperatures tend to make the reaction conditions more stringent, while lower temperatures do not. For additional details and explanations regarding the stringency of hybridization reactions, see Ausubel et al, Current Pr〇t〇c〇ls in Molecular Biology, Wiley Interscience Publishers, (1995). "Stringent conditions" or "high stringency conditions" as defined herein are as follows (but not limited to) identification: (1) use of low ionic strength and high temperature during washing, for example, using 0.015 Μ chlorination at 50 ° C Sodium / 0.0015 Μ sodium citrate / 0.1% sodium lauryl sulfate; (2) a denaturant (such as formamide, such as 50% (v / v) formamide) at 42 ° C during hybridization With 〇.1〇/0 bovine serum albumin / 0.1 ° /. Ficoll/〇.l% polyvinylpyrrolidone/5〇mM sodium phosphate buffer (pH 6.5) and 750 mM sodium hydride, 75 mM sodium citrate; or (3) 50% at 42 °C Indoleamine, 5xSSC (0.75 M NaCl, 0.075 citrate sodium citrate), 50 mM sodium sulphate (pH 6.8), 0.1% sodium pyrophosphate, 5 DDenhardt's solution, supersonic treatment鲑鱼精142769.doc -37· 201021828 DNA (50 pg/ml), 0.1% SDS and 10% dextran sulfate, washed at 0.2 ° SSC (sodium chloride / sodium citrate) at 42 ° C and Washing was carried out in 50% formamide at 55 ° C, followed by high stringency washes consisting of O.lxSSC containing EDTA at 55 °C. "Medium stringent conditions" are described, but are not limited to, in Sambrook et al., Molecular Cloning: A Laboratory Manual, New York: Cold Spring Harbor Press, 1989, and include washing solutions and hybridization conditions using stringent tb conditions as described above. (eg temperature, ionic strength and % SDS). An example of moderately stringent conditions is overnight incubation at 65 ° C in a solution containing the following: 1% bovine serum albumin, 0.5 M# sodium (pH 7.5), 1·25 mM EDTA, and 7% SDS/ 5xSSC (150 m M NaCl, 15 mM trisodium citrate), followed by washing of the filter in 2xSSC/l% SDS at 50 °C and washing the filter in 0.2x SSC/0.1% SDS at 50 °C. Those skilled in the art should understand how to adjust temperature, ionic strength, etc. as needed to accommodate factors such as probe length and similar factors. HL A "supermotif" is a peptide binding specificity shared by HLA molecules encoded by two or more HL A alleles. The overall phenotypic phenotypes of HLA supertypes for different populations are listed in Table IV (f). The non-limiting components of the various supertypes are as follows: A2: A*0201, A*0202, A*0203, A*0204, A*0205, A*0206 'A*6802, A*6901, A*0207 A3 : A3 , All , A31 , A*3301 , A*6801 , A*0301 , A*1101 , A*3101 B7 : B7 , B*3 501-03 , B*51 , B*5301 , B*5401 , 142769.doc -38- 201021828 B*5501 , B*5502 , B*5601 , B*6701 , B*7801 , B*0702 , B*5101 ' 6^5602 B44 : B*3701 , B*4402 , B* 4403, B*60 (B*4001), B61 (B*4006) A1 : A*〇l〇2, A*2604, A*3601, A*4301, A*8001 A24 : A*24, A*30 , A*2403, A*2404, A*3002, A*3003 B27: B*1401-02, B* 1503, B*1509, B*1510, ® B*1518, B*3801-02, B*3901 , B*3902, B*3903-04, B*4801_02, B*7301, B*2701_〇8 B58: B*1516, B*1517, B*5701, B*5702, B58 B62: B*4601 B52, B*1501 (B62), B*1502 (B75), B*1513 (B77) The population coverage calculations obtained by different HLA supertype combinations are listed in Table IV(g)$. As used herein, "treatment" or "therapeutic" and grammatical terms refer to any improvement in the consequences of any disease, such as prolonged survival, reduced morbidity and/or reduced side effects as a by-product of alternative therapeutic forms; It is easy to understand in the technology that m is not a therapeutic requirement, but it is preferred. The cause (eg, mouse or rat) has a transgenic base = =, ': the transgenic gene is in the pre-natal (eg, embryonic) = or animal ancestor. "Transgenic lean gene" is a DNA within the genome of a cell of a genetic animal J42769.doc -39- 201021828 As used herein, a HLA or cellular immune response "vaccine" is a combination comprising or encoding one or more peptides of the invention. Things. There are various embodiments of such vaccines such as a mixture of one or more individual peptides; one or more peptides of the invention comprising a plurality of epitopes; or a nucleic acid encoding such individual peptides or polymorphisms, eg, A small gene of an epitope peptide. "One or more peptides" may include any integer unit integer of 1 -15 0 or 150 or more, such as at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 , 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38 , 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 55, 60, 65, 70, 75, 8〇, 85, 9〇, %, ι〇〇, 1 〇5, 110, 115, 120, 125, 130, 135, 140, 145 or 150 or more than 15 peptides of the invention. The peptide or polypeptide may optionally be modified, such as by lipidation, to add a targeting sequence or other sequence. The HLA-like peptides of the present invention may be mixed or linked with a π-type HLA peptide to help activate cytotoxic lymphocytes and helper T lymphocytes. HLA vaccines may also comprise transiently labeled antigen-presenting cells, such as dendritic cells. The term "variant" refers to a molecule that exhibits variation with the type or normal type, such as in the corresponding position of the specifically described protein (eg, the 58P1D12 protein shown in Figure 1) and the right one, with multiple Proteins of different amino acid residues. The analog is a variant protein. Interview η丄* n 〇 Ά ^ Example. Potentially isomorphic and mono-nucleotide polymorphisms (other examples of SNm variants. The "58P1D12-related protein 皙6" 丄丄 «poor white shell" of the present invention includes the proteins specifically identified herein. And can be used in accordance with the methods described in this article or in the technique 142769.doc 201021828, which is easy to use, to separate/produce and characterize the dual gene variants and conservative substitution variants without improper experimentation. And analogs and homologs. Also included are fusion proteins that combine portions of different 58P1D12 proteins or fragments thereof, and fusion proteins of 58P1D12 proteins and heterologous polypeptides. These 58P1D12 proteins are collectively referred to as 58P1D12-related proteins, proteins of the invention or 58P1D12. The term "58P1D12 related protein" means having 4, 5, 6, 7, 8, 9, 10, 11' 12, 13, 14, 15, 16, 17, 18 ' 19, 20, 21, 22, 23, 24, 25 or more amino acid methic acid polypeptide fragments or 58P1D12 protein sequences; or having at least 3, 35, 40, 45, 50, 55, 60, 65, 70, 80, 85, 90, 95, 100 , 105, 110, 115 , 120, 125, 130, 135, 140, 145, 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, 200, 225, 250, 273, 300 or more than 300 amino acids Polypeptide fragment or 58P1D12 protein sequence. II.) 58P1D12 polynucleotide _ an aspect of the invention provides a polynucleus that is identical or complementary to, preferably in isolated form, all or part of the 58P1D12 gene, mRNA and/or coding sequence Glycosylates, including polynucleotides encoding 58P1D12-related proteins and fragments thereof, purine, RNA, DNA/RNA hybrids and related molecules; polynucleotides or oligonucleosides complementary to the 58P1D12 gene or mRNA sequence or a portion thereof An acid; and a polynucleotide or a nucleotide (referred to as "58P1D12 polynucleotide") that hybridizes to the 58P1D12 gene, mRNA, or hybridizes to a polynucleotide encoding 58P1D12. In all cases mentioned in this section, T can also be U in Figure 1. 142769.doc -41· 201021828 Examples of 58P1D12 polynucleotides include: 58P1D12 polynucleus having a sequence as shown in Figure 1 (as shown in Figure 1, wherein T is a nucleotide sequence of 58P1D12 of U) Glycosyl acid; at least 10 such nucleus acids having a polynucleotide of the sequence shown in Figure 1; or at least 1 having a sequence as shown in Figure 1, wherein T is a polynucleotide of U One contiguous nuclear bitter acid. Polynucleotides encoding a relatively long portion of the 58P 1D12 protein are also within the scope of the invention. For example, encoding a 58P1D12 protein or "variant" of about amino acid guanidine (or 2 or 30 or 40, etc.) as shown in Figure 1 or Figure 3 to about amino acid 20 (or 30 or 40 or Polynucleotides of 50, etc. can be produced by a variety of techniques well known in the art. Such polynucleotide fragments may include any portion of the 58P1D12 sequence as shown in Figure 1. ΙΙ·Α·) 5 Use of the 8P1D12 polynucleotide ΙΙ.Α.1 Monitoring genetic abnormalities The polynucleotides of the preceding paragraphs have a variety of different specific uses. The human 58P1D12 gene is located in the chromosomal location set forth in the example entitled "Chromosome localization of 58P1D12". For example, since the 58ρ丨D丨2 gene is localized in this chromosome, a polynucleotide encoding a different region of the 58P1D12 protein is used to discriminate the cytogenetic abnormality at the chromosomal location, such as an abnormality associated with various cancers. . In some genes, multiple chromosomal abnormalities (including rearrangements) have been identified as frequently occurring cytogenetic abnormalities in many different cancers (see, for example, Krajinovic et al., Mutat. Res. 382(3-4): 81-83 (1998) Johansson et al., Blood 86 (1〇). 3905-3914 (1995) and Finger et al., Ρ·Ν. AS 85(23): 9158- 9162 (1988)). Thus, the poly(142769.doc-42-201021828) nucleotide encoding a specific region of the 58P1D12 protein provides a novel tool that can provide greater accuracy than previously possible, which will encode a region of 58P1D12 A genetic abnormality that leads to a malignant phenotype is depicted. In such cases, such polynucleotides meet the requirements of the art for expanding the sensitivity of chromosome screening in order to identify more subtle and unusual chromosomal abnormalities (see, for example, Evans et al., Am. J. Obstet. Gynecol 171(4): 1055-1057 (1994)). Furthermore, since 58P1D12 has been shown to be highly expressed in ovarian cancer and other cancers, the 58P1D12 polynucleotide can be used in a method of assessing the state of the 58p1D12 gene product in normal tissues versus cancerous tissues. Polynucleotides encoding a specific region of the 58P1D12 protein are typically used to assess whether there is a change in a particular region of the 58P1D12 gene, such as a region containing one or more motifs (such as deletions, insertions, point mutations, or changes in antigenic reduction) ). Exemplary assays include RT_PCR assays and single-strand conformation polymorphism (SSCP) analyses (see, eg, Marrogi et al., J. Cutan. Pathol. φ 26 (8): 369-378 (1999)). Polynucleotides encoding specific regions of the protein examine such regions within the protein. II.A.2 antisense embodiment
本文中所揭示之本發明特別涵蓋的其他核酸相關實施例 為基因組DNA、cDNA、核酶及反義分子以及基於替代主 鏈或包括替代驗基的核酸分子(無論自天然來源獲得還是 經合成),且包括能夠抑制58P1D12之RNA或蛋白質表現的 分子。舉例而言,反義分子可為RNA或其他分子,包括肽 核酸(PNA)或以鹼基對依賴性方式特異性結合dna或RNA 142769.doc -43- 201021828 的非核酸分子,諸如硫代鱗酸醋衍生物。熟習此項技術者 可容易地使用本文中所揭示之58P1D12聚核苷酸及聚核苷 酸序列獲得此等類別之核酸分子。 反義技術需要投與與位於細胞内之標靶聚核苷酸結合的 外源寡核苷酸。術語「反義」係指該等寡核苷酸與其細胞 内標靶(例如58P1D12)互補。參見例如Jack Cohen, Ol igodeoxy nucleotides, Antisense Inhibitors of GeneOther nucleic acid related embodiments specifically contemplated by the invention disclosed herein are genomic DNA, cDNA, ribozymes, and antisense molecules, as well as nucleic acid molecules based on alternative backbones or including alternatives (whether obtained from natural sources or synthesized) And includes molecules capable of inhibiting the expression of RNA or protein of 58P1D12. For example, an antisense molecule can be an RNA or other molecule, including a peptide nucleic acid (PNA) or a non-nucleic acid molecule that specifically binds dna or RNA 142769.doc-43-201021828 in a base-pair dependent manner, such as a thio scale. Sour vinegar derivatives. Those skilled in the art can readily obtain nucleic acid molecules of these classes using the 58P1D12 polynucleotides and polynucleotide sequences disclosed herein. Antisense technology requires the administration of an exogenous oligonucleotide that binds to a target polynucleotide located within the cell. The term "antisense" means that the oligonucleotides are complementary to their intracellular targets (e.g., 58P1D12). See, for example, Jack Cohen, Ol igodeoxy nucleotides, Antisense Inhibitors of Gene
Expression, CRC Press, 1989 ;及 Synthesis 1:1-5 (1988)。 本發明之58P1D12反義寡核苦酸包括呈現增強的癌細胞生 長抑制作用的衍生物,諸如S-寡核苷酸(硫代磷酸酿衍生 物或S-oligo,參見Jack Cohen,同上)。S-oligo(核普硫代 磷酸醋)為寡核普酸(〇-〇lig〇)之等電子類似物,其中填酸 基之非橋接氧原子經硫原子置換。本發明之S-〇lig〇可藉由 用硫轉移試劑3H-1,2_苯并二硫醇-3-酮-1,1-二氧化物處理 對應O-oligo來製備。參見例如Iyer,R· P·等人,J 〇rg Chem. 55:4693-4698 (1990);及 Iyer,R· Ρ·等人,j· Am Chem. Soc. 112:1253-1254 (1 990)。本發明之其他 58P 】D12 反義募核苷酸包括此項技術甲已知的嗎啉基反義募核苦酸 (參見例如 Partridge等人,1996,Antisense & Nucleic Acid Drug Development 6: 169-175)。 本發明之58P1D12反義寡核苷酸通常可為與58P1D12基 因組序列或對應mRNA之開頭100個5,密碼子或末尾ι〇〇個3, 密碼子互補且穩定雜交的RNA或DNA。不需要絕對互補, 但南互補度較佳。使用與此區域互補之寡核苷酸容許與 142769.doc -44- 201021828 58P1D12 mRNA選擇性雜交而不與限定蛋白激酶之其他調 節性亞單元的mRNA選擇性雜交。在一實施例中’本發明 之58P1D12反義券核苷酸為反義DNA分子之15_mer至3〇_ mer片#又’其具有與58P1D12 mRNA雜交之序列。58P1D12 反義养核苷酸視需要為與58P1D12之開頭1 〇個5,密碼子或 末尾10個3'密碼子中之區域互補的儿…^寡核苷酸。或 者,反義分子經修飾以使用核酶抑制58plD12表現,參見 例如 L. A. Couture & D· T. Stinchcomb; Trends Genet 12: 510-515 (1996)。 II.A.3引子及引子對 本發明之此等核苷酸之其他特定實施例包括容許本發明 之聚核苷酸或其任何特定部分之特異性擴增的引子及引子 對,及與本發明之核酸分子或其任何部分選擇性或特異性 雜交的探針。探針可經可偵測標誌標記,諸如放射性同位 素、螢光化合物、生物發光化合物、化學發光化合物、金 屬螯合劑或酶。該等探針及引子用於偵測58p1D12聚核苦 酸是否存在於樣本中且用作偵測表現58P1Di2蛋白質之細 胞的方式。 該等探針之實例包括包含如圖1中所示之人類58P1D12 cDNA序列之全部或部分的多肽。能夠特異性擴增58piD12 mRNA之引子對之實例亦描述於實例中。如熟習此項技術 者所瞭解,大量不同引子及探針可基於本文中所提供之序 列製備且可有效地用於擴增及/或偵測58P1D12 mRNA。 本發明之58P1D12聚核苷酸可用於多種目的,包括(但不 142769.doc • 45· 201021828 限於)用作擴增及/或探測58P1D12基因、mRNA或其片段之 探針及引子;用作卵巢癌及其他癌症之診斷及/或預後之 試劑;用作能夠指導58P1D12多肽之表現的編碼序列;用 作調節或抑制58P1D12基因之表現及/或58P1D12轉錄物之 轉譯的工具;及用作治療劑。 本發明包括使用如本文中所述之任何探針自天然存在之 來源(諸如人類或其他哺乳動物)中鑑別及分離58P1D12或 58P1D12相關核酸序列,·以及使用經分離之核酸序列本 身’其包含所用探針中所見之序列之全部或大部分。 II.A.4編碼58P1D12之核酸分子之分離 本文中所述之58P1D12 cDNA序列能夠使編碼58P1D12 基因產物之其他聚核苷酸得到分離,且能夠使編碼 5 8P1D12基因產物同源物或者58P1D12基因產物之剪接同 功異型物、對偶基因變異體及突變體形式的聚核苷酸以及 編碼58P1D12相關蛋白質之類似物的聚核苷酸得到分離。 可用於分離編碼58P1D12基因之全長cDNA的多種分子選殖 方法已熟知(參見例如Sambrook, J.等人,Molecular Cloning: A Laboratory Manual,第 2 版,Cold Spring Harbor Press, New York, 1989 ; Current Protocols in Molecular Biology. Ausubel 等人編,Wiley and Sons, 1 995)。舉例而言,可方便地使用λ噬菌體選殖方法,該等 方法使用市售的選殖系統(例如Lambda ZAP Express, Stratagene)。含有58P1D12基因cDNA之噬菌體純系可藉由 用經標記之58P1D1 2 cDNA或其片段探測而得到鑑別。舉 142769.doc -46- 201021828 例而言,在一實施例_,58P1D12 cDNA(例如圖1}或其— 部分可加以合成且可用作取得對應於58p1D12基因之重疊 及全長cDNA的探針。58P1D12基因本身可藉由用58P1D12 DNA探針或引子篩檢基因組dnA文庫、細菌人工染色體文 庫(BAC)、酵母人工染色體文庫(YAC)及其類似文庫來分 離。 II.A.5重組核酸分子及宿主_載體系統 本發明亦提供含有58P1D12聚核苷酸、其片段、類似物 籲或同源物的重組DNA或RNA分子’包括(但不限於)嗟菌 體、質體、噬菌質體(phagemid)、黏質體、YAC、BAC以 及此項技術中熟知的多種病毒及非病毒載體,及經該等重 組DNA或RNA分子轉型或轉染的細胞。產生該等分子之方 法已熟知(參見例如Sambrook等人,1989,同上)。 本發明進一步提供宿主-載體系統,其在適當原核或真 核宿主細胞内包含含有58P1D12聚核苷酸、其片段、類似 物或同源物之重組DNA分子。適當真核宿主細胞之實例包 參 括酵母細胞、植物細胞或動物細胞,諸如哺乳動物細胞或 昆蟲細胞(例如可受桿狀病毒感染之細胞,諸如Sf9或 HighFive細胞)。適當哺乳動物細胞之實例包括多種卵巢癌 細胞株(諸如OVCAR-5及CaOV-3、其他可轉染或可轉導卵 巢癌細胞株)、初級細胞(PrEC)以及常用於表現重組蛋白質 之多種哺乳動物細胞(例如COS、CHO、293、293T細胞)。 更特定而言,可使用包含58P1D12或其片段、類似物或同 源物之編碼序列的聚核苷酸以便使用此項技術中常用且廣 142769.doc • 47· 201021828 泛皆知的諸多宿主-載體系統產生58P1D12蛋白質或其片 段。 可獲得適用於表現58P1D12蛋白質或其片段之多種宿主_ 載體系統,參見例如Sambrook等人,1 989,同上;Current Protocols in Molecular Biology,1995,同上。供哺乳動物 表現用之較佳載體包括(但不限於)pcDNA 3.1 myc-His- tag(Invitrogen)及逆轉錄病毒載體pSR tkneo(Muller等人, 1991,MCB 1 1:1785)。使用此等表現載體,可使58ρ1〇ΐ2 在數種卵巢癌及非卵巢癌細胞株(包括例如293、293T、 rat-1、NIH 3T3及TsuPrl)中表現。本發明之宿主_載體系統 可用於製備58P1D12蛋白質或其片段。該等宿主-載體系統 可用於研究58P1D12及58P1D12突變體或類似物之功能特 性。 重組人類58P1D1 2蛋白質或其類似物或同源物或片段可 藉由經編碼58P1D12相關核苷酸之構築體轉染的哺乳動物 細胞製備。舉例而言’可用編碼5 8P1D12或其片段、類似 物或同源物之表現質體轉染293T細胞,在293T細胞中表現 58P1D12相關蛋白質,且使用標準純化方法(例如使用抗 5 8P1D12抗體進行親和性純化)分離重組58p1D12蛋白質。 在另一實施例中,將58P1D12編碼序列次選殖入逆轉錄病 毒載體pSRcxMSVtkneo内且用於感染多種哺乳動物細胞 株,諸如NIH 3T3、TsuPrl、293及rat-Ι,以便建立 58P1D12表現細胞株。亦可使用此項技術中熟知的多種其 他表現系統。可使用編碼與58P1D12編碼序列同框連接之 142769.doc -48- 201021828 前導肽的表現構築體以用於吝士舌, 用於屋生重組58P1D12蛋白質之分 泌形式。 如本文中所述,遺傳密碼冗餘容許58pim2基因序列發 生變異。特定而言,此項技術中已知,特定宿主種類通常 具有特定的密碼子偏好,且因此可將所揭示之序列調適成 對所要宿主較佳。舉例而言,較佳類似物密碼子序列之稀 有密碼子(亦即在所要宿主之已知序列中具有小於約2〇%之 利用頻率的密碼子)通常經較高頻率之密碼子置換。例 如,藉由利用可在網際網路(諸如URL dna affrc g〇 jp/〜 nakamura/c〇d〇n.html)上獲得之密碼子用法表計算特定種 類之密碼子偏好。 已知其他序列修飾可使細胞宿主中之蛋白質表現增強。 此等序列修飾包括將編碼虛假聚腺苷酸化信號、外顯子/ 内含子剪接位點信號、轉座子樣重複的序列及/或不利於 基因表現之其他該等經充分表徵的序列消除。將序列之 _ GC含量調整至如藉由參考宿主細胞中表現之已知基因所 計算給定細胞宿主之平均程度。若可行,則修飾序列以避 免預期的二級mRNA髮夾結構。其他有用修飾包括將轉譯 起動一致序列添加在開放閱讀框架之起始處,如Kozak,Expression, CRC Press, 1989; and Synthesis 1:1-5 (1988). The 58P1D12 antisense oligonucleotide of the present invention includes a derivative exhibiting enhanced cancer cell growth inhibitory action, such as an S-oligonucleotide (phosphorophosphoric acid derivative or S-oligo, see Jack Cohen, supra). S-oligo (nucleoside thiophosphoric acid vinegar) is an electronic analog of oligonucleotide (〇-〇lig〇) in which a non-bridged oxygen atom of an acid-filled group is replaced by a sulfur atom. The S-〇lig〇 of the present invention can be produced by treating O-oligo with a sulfur transfer reagent 3H-1,2-benzodithiol-3-one-1,1-dioxide. See, for example, Iyer, R. P. et al., J 〇rg Chem. 55: 4693-4698 (1990); and Iyer, R. Ρ et al., j. Am Chem. Soc. 112: 1253-1254 (1 990 ). Other 58P]D12 antisense raised nucleotides of the invention include morpholino antisense sulphuric acid known in the art (see, for example, Partridge et al, 1996, Antisense & Nucleic Acid Drug Development 6: 169- 175). The 58P1D12 antisense oligonucleotide of the present invention may generally be RNA or DNA which is complementary to and stably hybridizes with the 58P1D12 genomic sequence or the first 100 5, codon or end 〇〇 3, codons of the corresponding mRNA. There is no need for absolute complementarity, but South complementarity is better. The use of oligonucleotides complementary to this region allows selective hybridization with 142769.doc -44 - 201021828 58P1D12 mRNA without selective hybridization to mRNAs of other regulatory subunits that define protein kinases. In one embodiment, the 58P1D12 antisense nucleus nucleotide of the present invention is a 15-mer to 〇 mer fragment of the antisense DNA molecule and has a sequence which hybridizes to the 58P1D12 mRNA. The 58P1D12 antisense nucleotide is optionally an oligo-nucleotide complementary to the region of the first 5 , 5, codon or the last 10 3' codons of 58P1D12. Alternatively, the antisense molecule is modified to inhibit 58plD12 expression using a ribozyme, see, for example, L. A. Couture & D. T. Stinchcomb; Trends Genet 12: 510-515 (1996). II.A.3 Primers and Primers Other specific examples of such nucleotides of the invention include primers and primer pairs that permit specific amplification of the polynucleotide of the invention or any particular portion thereof, and the invention A probe that selectively or specifically hybridizes to a nucleic acid molecule or any portion thereof. The probe may be labeled with a detectable label such as a radioisotope, a fluorescent compound, a bioluminescent compound, a chemiluminescent compound, a metal chelating agent or an enzyme. These probes and primers are used to detect the presence or absence of 58p1D12 polynucleic acid in the sample and as a means of detecting cells expressing the 58P1Di2 protein. Examples of such probes include polypeptides comprising all or part of the human 58P1D12 cDNA sequence as shown in Figure 1. Examples of primer pairs capable of specifically amplifying 58 piD12 mRNA are also described in the examples. As will be appreciated by those skilled in the art, a wide variety of different primers and probes can be made based on the sequences provided herein and can be effectively used to amplify and/or detect 58P1D12 mRNA. The 58P1D12 polynucleotide of the present invention can be used for various purposes, including (but not limited to, 142769.doc • 45·201021828) as a probe and primer for amplifying and/or detecting the 58P1D12 gene, mRNA or a fragment thereof; An agent for the diagnosis and/or prognosis of cancer and other cancers; a coding sequence capable of directing the expression of a 58P1D12 polypeptide; a tool for regulating or inhibiting the expression of the 58P1D12 gene and/or translation of a 58P1D12 transcript; and as a therapeutic agent . The invention encompasses the use of any of the probes described herein to identify and isolate a 58P1D12 or 58P1D12-related nucleic acid sequence from a naturally occurring source, such as a human or other mammal, and to use the isolated nucleic acid sequence itself All or most of the sequences seen in the probe. II.A.4 Isolation of Nucleic Acid Molecules Encoding 58P1D12 The 58P1D12 cDNA sequence described herein enables the isolation of other polynucleotides encoding the 58P1D12 gene product and enables the encoding of the 5 8P1D12 gene product homolog or the 58P1D12 gene product. The splicing isoforms, the dual gene variants and the mutant form of the polynucleotide, and the polynucleotide encoding the analog of the 58P1D12 related protein are isolated. A variety of molecular selection methods that can be used to isolate full-length cDNA encoding the 58P1D12 gene are well known (see, for example, Sambrook, J. et al., Molecular Cloning: A Laboratory Manual, 2nd Edition, Cold Spring Harbor Press, New York, 1989; Current Protocols In Molecular Biology. Ausubel et al., Wiley and Sons, 1 995). For example, lambda phage selection methods can be conveniently employed using commercially available colonization systems (e.g., Lambda ZAP Express, Stratagene). A phage-pure line containing the 58P1D12 gene cDNA can be identified by detection with the labeled 58P1D1 2 cDNA or a fragment thereof. For example, in an embodiment, a 58P1D12 cDNA (eg, Figure 1) or a portion thereof can be synthesized and used as a probe to obtain overlapping and full-length cDNA corresponding to the 58p1D12 gene. The 58P1D12 gene itself can be isolated by screening the genomic dnA library, bacterial artificial chromosome library (BAC), yeast artificial chromosome library (YAC) and the like with a 58P1D12 DNA probe or primer. II. A.5 recombinant nucleic acid molecule and Host-Vector System The invention also provides a recombinant DNA or RNA molecule comprising a 58P1D12 polynucleotide, a fragment thereof, an analog or a homologue, including but not limited to, a bacterium, a plastid, a phage ( Phagemid), viscous, YAC, BAC, and a variety of viral and non-viral vectors well known in the art, and cells transformed or transfected with such recombinant DNA or RNA molecules. Methods for producing such molecules are well known (see For example, Sambrook et al., 1989, supra. The invention further provides a host-vector system comprising a 58P1D12 polynucleotide, fragment, analog or homolog thereof in a suitable prokaryotic or eukaryotic host cell. Recombinant DNA molecules. Examples of suitable eukaryotic host cells include yeast cells, plant cells or animal cells, such as mammalian cells or insect cells (e.g., cells that can be infected with baculovirus, such as Sf9 or HighFive cells). Examples of mammalian cells include various ovarian cancer cell lines (such as OVCAR-5 and CaOV-3, other transfectable or transducible ovarian cancer cell lines), primary cells (PrEC), and various mammals commonly used to express recombinant proteins. Cells (eg, COS, CHO, 293, 293T cells). More specifically, a polynucleotide comprising a coding sequence for 58P1D12 or a fragment, analog or homolog thereof can be used in order to use the commonly used and widely used in the art. .doc • 47· 201021828 A number of host-vector systems are known to produce 58P1D12 proteins or fragments thereof. A variety of host-vector systems suitable for the expression of 58P1D12 proteins or fragments thereof can be obtained, see, for example, Sambrook et al., 1 989, supra; Current Protocols in Molecular Biology, 1995, supra. Preferred carriers for mammalian performance include (but are not limited to pcDNA 3.1 myc-His-tag (Invitrogen) and the retroviral vector pSR tkneo (Muller et al, 1991, MCB 1 1:1785). Using these expression vectors, 58ρ1〇ΐ2 can be used in several ovarian cancers and non- Ovarian cancer cell lines (including, for example, 293, 293T, rat-1, NIH 3T3, and TsuPrl) are expressed. The host-vector system of the invention can be used to prepare 58P1D12 protein or a fragment thereof. These host-vector systems can be used to study the functional properties of 58P1D12 and 58P1D12 mutants or analogs. Recombinant human 58P1D1 2 protein or an analog or homolog or fragment thereof can be prepared by mammalian cells transfected with a construct encoding a 58P1D12-related nucleotide. For example, '293T cells can be transfected with a plastid encoding the 5 8P1D12 or a fragment, analog or homolog thereof, and the 58P1D12-related protein is expressed in 293T cells, and affinity is used using standard purification methods (eg, using an anti-58P1D12 antibody). Purification) Recombinant 58p1D12 protein was isolated. In another embodiment, the 58P1D12 coding sequence is sub-selected into the retroviral vector pSRcxMSVtkneo and used to infect a variety of mammalian cell lines, such as NIH 3T3, TsuPrl, 293, and rat-Ι, to establish a 58P1D12 expression cell line. A variety of other performance systems well known in the art can also be used. The expression construct of the leader peptide 142769.doc -48-201021828 can be used in the same frame as the 58P1D12 coding sequence for use in the gentleman tongue for the secretory form of the 58P1D12 protein. As described herein, genetic code redundancy allows the 58 pim2 gene sequence to mutate. In particular, it is known in the art that a particular host species typically has a particular codon preference, and thus the disclosed sequences can be adapted to the desired host. For example, a rare codon of a preferred analog codon sequence (i.e., a codon having a frequency of use of less than about 2% in a known sequence of a desired host) is typically replaced with a higher frequency codon. For example, a particular type of codon preference can be calculated by using a codon usage table available on the Internet (such as URL dna affrc g〇 jp/~ nakamura/c〇d〇n.html). Other sequence modifications are known to enhance the performance of proteins in cellular hosts. Such sequence modifications include the elimination of a sequence encoding a false polyadenylation signal, an exon/intron splice site signal, a transposon-like repeat, and/or other such well-characterized sequences that are detrimental to gene expression. . The _GC content of the sequence is adjusted to the average degree of a given cellular host as calculated by reference to known genes expressed in the host cell. If feasible, the sequence is modified to avoid the expected secondary mRNA hairpin structure. Other useful modifications include adding a translation start consensus sequence at the beginning of an open reading frame, such as Kozak.
Mol. Cell Biol.,9:5073-5080 (1989)中所述。熟習此項技術 者應瞭解,真核核糖體僅在5,近側AUG密碼子處起動轉譯 的一般規則僅在罕見條件下廢除(參見例如Kozak PNAS 92(7): 2662-2666,(1995)及Kozak NAR 15(20): 8125-8148 (1987))〇 142769.doc -49- 201021828 III.) 58P1D12相關蛋白質 本發明之另一態樣提供58P1D12相關蛋白質。58P1D12 蛋白質之特定實施例包含具有如圖1 (較佳圖1A)中所示之 人類58P1D12胺基酸序列之全部或部分的多肽。或者, 58P1D12蛋白質之實施例包含在圖1中所示之58卩1〇12胺基 酸序列中具有變動之變異體、同源物或類似物多肽。 5 8P1D12多肽之實施例包括:具有圖1中所示之序列的 58P1D12多肽;由如圖1中所示、其中τ為u之58P1D12之聚 核苷酸序列編碼的肽;編碼具有如圖1中所示之序列的多❹ 肽的至少1 0個b比連核苷酸;或由具有如圖1中所示、其中T 為U之序列的聚核苷酸編碼的至少〖〇個视連肽。 表II中提供胺基酸縮寫。蛋白質中可經常進行保守性胺 基酸取代而不改變蛋白質之構形或功能。本發明之蛋白質 可包含1、2、3、4、5、6、7、8、9、10、11、12、13、 14、1 5個保守性取代。 本文中所揭示之本發明之實施例包括此項技術中所接受 之58P1D12蛋白質之多種變異體或類似物,諸如具有胺基〇 酸插入、缺失及取代之多肽。58P1D12變異體可使用此項 技術中已知的方法(諸如定點突變誘發、丙胺酸掃描及PCR 突變誘發)製備。可對經選殖之DNA執行定點突變誘發 (Carter等人 ’ Nucl. Acids Res·, 13:433 1 (1986) ; Zoller等 人,Nucl. Acids Res,,10:6487 (1987))、盒式突變誘發 (Wells等人,Gene, 34:315 (1985))、限制性選擇突變誘發 (Wells專人 ’ Philos. Trans. r. s〇c. London SerA,317:415 142769.doc •50· 201021828 (1986))或其他已知技術’以製備58piDi2變異體dNA。 亦可使用掃描胺基酸分析法沿著涉及特定生物活性(諸 如蛋白質-蛋白質相互作用)之毗連序列鑑別一或多個胺基 酸。較佳掃描胺基酸為相當小的中性胺基酸。該等胺基酸 包括丙胺酸、甘胺酸、絲胺酸及半胱胺酸。丙胺酸通常為 此組中之較佳掃描胺基酸,原因在於其消除超出β-碳之側 鏈且不大可能改變變異體之主鏈構形。丙胺酸通常因其為 最常見的胺基酸而亦較佳。此外,其經常存在於掩埋位置 與曝露位置中(Creighton,The Proteins,(w.h. Freeman & Co., N.Y.); Chothia, J. Mol. Bi〇l.,i5〇:i (1976))。若丙胺 酸取代不產生適量變異體,則可使用電子等排性胺基酸。 如本文中所定義,58P1D12變異體、類似物或同源物之 區別特性在於其具有至少一個與具有圖丨之胺基酸序列之 58P1D12蛋白質具有「交叉反應性」的抗原決定基。如此 句中所用,「交叉反應性」意謂該特異性結合58piD12變異 ^ 體之抗體或T細胞亦特異性結合具有圖1中所列胺基酸序列 的58P1D12蛋白質。當多肽不再含有能夠由特異性結合起 始58P1D12蛋白質之抗體或τ細胞識別的任何抗原決定基 時’該多肽即不為圖1中所示蛋白質之變異體。熟習此項 技術者應瞭解,可識別會與不同尺寸抗原決定基結合之蛋 白質之抗體及一組約四或五個毗連或不毗連胺基酸均視為 最小抗原決定基中之胺基酸典型數目。參見例如1^以1等Mol. Cell Biol., 9: 5073-5080 (1989). Those skilled in the art should be aware that the general rule that eukaryotic ribosomes initiate translation at only the proximal AUG codon is only abolished under rare conditions (see, for example, Kozak PNAS 92(7): 2662-2666, (1995). And Kozak NAR 15(20): 8125-8148 (1987)) 〇 142769.doc -49- 201021828 III.) 58P1D12 Related Proteins Another aspect of the invention provides a 58P1D12 related protein. A specific embodiment of the 58P1D12 protein comprises a polypeptide having all or part of the human 58P1D12 amino acid sequence as shown in Figure 1 (preferably Figure 1A). Alternatively, an embodiment of the 58P1D12 protein comprises a variant, homolog or analog polypeptide having a variation in the 58卩1〇12 amino acid sequence shown in Figure 1. Examples of the 5P1D12 polypeptide include: a 58P1D12 polypeptide having the sequence shown in Figure 1; a peptide encoded by a polynucleotide sequence of 58P1D12 in which τ is u as shown in Figure 1; At least 10 b-specific nucleotides of the polypeptide of the sequence shown; or at least one of the contiguous peptides encoded by a polynucleotide having a sequence of T as shown in Figure 1 . Amino acid abbreviations are provided in Table II. Conservative amino acid substitutions can often be made in proteins without altering the conformation or function of the protein. The protein of the present invention may comprise 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 conservative substitutions. Embodiments of the invention disclosed herein include various variants or analogs of the 58P1D12 protein accepted in the art, such as polypeptides having amino acid hydrazine insertions, deletions, and substitutions. The 58P1D12 variant can be prepared using methods known in the art, such as site-directed mutagenesis, alanine scanning, and PCR mutation induction. Site-directed mutagenesis can be performed on selected DNA (Carter et al. 'Nucl. Acids Res., 13:433 1 (1986); Zoller et al., Nucl. Acids Res, 10:6487 (1987)), cassette Mutation induction (Wells et al, Gene, 34: 315 (1985)), restriction-selective mutation induction (Wells Specialist' Philos. Trans. r. s〇c. London SerA, 317:415 142769.doc •50· 201021828 ( 1986)) or other known techniques 'to prepare a 58 piDi2 variant dNA. One or more amino acids can also be identified along a contiguous sequence involving a particular biological activity, such as a protein-protein interaction, using a scanning amino acid assay. Preferably, the scanning amino acid is a relatively small neutral amino acid. Such amino acids include alanine, glycine, serine and cysteine. Alanine is generally the preferred scanning amino acid in this group because it eliminates the side chain beyond the beta carbon and is unlikely to alter the backbone configuration of the variant. Alanine is generally preferred because it is the most common amino acid. Furthermore, it is often present in the buried and exposed locations (Creighton, The Proteins, (w.h. Freeman & Co., N.Y.); Chothia, J. Mol. Bi〇l., i5〇: i (1976)). If the alanine substitution does not produce an appropriate amount of variant, an isosteric amino acid can be used. As defined herein, a distinguishing characteristic of a 58P1D12 variant, analog or homolog is that it has at least one epitope that is "cross-reactive" with the 58P1D12 protein having the amino acid sequence of the map. As used in this sentence, "cross-reactivity" means that the antibody or T cell that specifically binds to the 58piD12 variant also specifically binds to the 58P1D12 protein having the amino acid sequence set forth in Figure 1. When the polypeptide no longer contains any epitope that can be recognized by an antibody or tau cell that specifically binds to the initial 58P1D12 protein, the polypeptide is not a variant of the protein shown in Figure 1. Those skilled in the art will appreciate that antibodies that recognize proteins that bind to different size epitopes and a group of about four or five contiguous or non-contiguous amino acids are considered typical of the amino acid in the minimal epitope. number. See for example 1^ to 1 etc.
人 ’ J. Immunol 2000 165(12): 6949-6955 ; Hebbes等人, Mol Immunol (1989) 26(9):865-73 ; Schwartz 等人,J 142769.doc -51- 201021828Human ' J. Immunol 2000 165 (12): 6949-6955; Hebbes et al, Mol Immunol (1989) 26(9): 865-73; Schwartz et al, J 142769.doc -51- 201021828
Immunol (1985) 135(4):2598-608 ° 其他類別之58P1D12相關蛋白質變異體與圖1之胺基酸 序列或其片段共有70%、75% ' 80%、85%、90%、95%或 95%以上的相似度。另一特定類別之12蛋白質變異 體或類似物包含本文中所述或此項技術中目前已知之一或 多個58P1D12生物學基元。因此’本發明涵蓋相對於起始 片段具有改變之功能(例如免疫原性)特性的58p iD12片段 (核酸或胺基酸)之類似物。應瞭解,現為或將成為此項技 術之部分的基元欲應用於圖1之核酸或胺基酸序列。 如本文中所述’本發明之實施例包括含有小於圖1中所 示之58P1D12蛋白質之完整胺基酸序列的多肽。舉例而 吕’本發明之代表性實施例包含具有圖1中所示之58P1D12 蛋白質之任何4個、5個、6個、7個、8個、9個、1〇個、11 個、12個、13個、14個、15個或15個以上毗連胺基酸的 肽/蛋白質。 58P1D12相關蛋白質可使用此項技術中熟知的標準肽合 成技術或使用化學分裂方法產生。或者,可使用重組方法 產生編碼5 8P1D12相關蛋白質之核酸分子。在一實施例 中’核酸分子提供產生58P1D12蛋白質(或其變異體、同源 物或類似物)之限定片段的方法。 III.A.)具有基元之蛋白質實施例 本文中所揭示之本發明之其他說明性實施例包括 58P1D12多肽’該等58P1D12多肽包含一或多個内含於如 圖1所列之58P1D12多肽序列内之生物學基元的胺基酸殘 142769.doc -52- 201021828 基。多種基元於此項技術中已知’且可藉由諸多可公開獲 得之網際網路站點(諸如BIMAS)評估蛋白質中是否存在該 寺基7〇。 先前已揭示具有全部58P1D12變異體蛋白質之子序列的 基元。 基於 pfam搜哥(參見 URL位址 pfam.wustl.edu/),表 iv(h) 列舉若干經常出現的基元。表IV(h)之各行列舉:(1)基•元 名稱縮寫;(2)基元家族之不同成員之間所發現的一致性百 ® 分比;(3)基元名稱或說明;及(4)最常見功能;若基元與 位置相關’則包括位置資訊。 由於觀測到上述58P1D12基元與生長失調相關且由於 58P1D12在某些癌症中受到過度表現(參見例如表j),因此 包含一或多個上述58P1D12基元之多肽可用於闡明惡性表 現型之具體特徵。舉例而言,胳蛋白激酶Η、c AMP及 camp依賴性蛋白激酶及蛋白激酶c為已知與惡性表現型之 g 出現相關的酶(參見例如Chen等人,Lab Invest., 78(2): 165-174 (1998),Gaiddon 等人,Endocrinology 136(10): 4331-4338 (1995),Hall 等人,Nucleic Acids Research 24(6): 1119-1126 (1996); Peterziel等人,Oncogene 18(46): 6322-6329 (1999);及 O'Brian,Oncol. Rep. 5(2): 305-309 (1998))。此外’糖基化與肉豆蔻醯化皆為亦與癌症及癌症 發展相關之蛋白質修飾(參見例如Dennis等人,BiochemImmunol (1985) 135(4): 2598-608 ° Other 58P1D12-related protein variants share 70%, 75% '80%, 85%, 90%, 95% of the amino acid sequence of Figure 1 or its fragment Or 95% or more similarity. Another particular class of 12 protein variants or analogs comprises one or more of the 58P1D12 biological motifs described herein or currently known in the art. Thus, the invention encompasses analogs of a 58p iD12 fragment (nucleic acid or amino acid) having altered functional (e.g., immunogenic) properties relative to the starting fragment. It will be appreciated that a motif that is or will be part of this technology is intended for use in the nucleic acid or amino acid sequence of Figure 1. As described herein, embodiments of the invention include polypeptides comprising an intact amino acid sequence that is less than the 58P1D12 protein shown in Figure 1. By way of example, a representative embodiment of the invention comprises any of four, five, six, seven, eight, nine, one, eleven, eleven, twelve having the 58P1D12 protein shown in FIG. , 13, 14, 15 or more peptides/proteins adjacent to the amino acid. The 58P1D12 related protein can be produced using standard peptide synthesis techniques well known in the art or using chemical cleavage methods. Alternatively, a recombinant method can be used to generate a nucleic acid molecule encoding a 5 8P1D12 related protein. In one embodiment the 'nucleic acid molecule provides a method of producing a defined fragment of a 58P1D12 protein (or variant, homolog or analog thereof). III.A.) Proteins with Primers Examples Other illustrative embodiments of the invention disclosed herein include 58P1D12 polypeptides. The 58P1D12 polypeptides comprise one or more of the 58P1D12 polypeptide sequences as listed in Figure 1. Amino acid residues in the biological motifs within 142769.doc -52- 201021828. A variety of motifs are known in the art' and the presence of the temple base in the protein can be assessed by a number of publicly available internet sites such as BIMAS. A motif having a subsequence of all 58P1D12 variant proteins has been previously disclosed. Based on pfam search (see URL address pfam.wustl.edu/), table iv(h) lists several frequently occurring primitives. The rows in Table IV(h) are listed: (1) abbreviations for the base name; (2) the consistency percentage found between different members of the primitive family; (3) the name or description of the primitive; 4) The most common function; if the primitive is related to the location, it includes location information. Since the above 58P1D12 motif is observed to be associated with growth dysregulation and because 58P1D12 is overexpressed in certain cancers (see, eg, Table j), polypeptides containing one or more of the above 58P1D12 motifs can be used to elucidate specific features of malignant phenotypes. . For example, tic-kinase kinase c, c AMP and camp-dependent protein kinases and protein kinase c are enzymes known to be associated with the appearance of g of the malignant phenotype (see, eg, Chen et al, Lab Invest., 78(2): 165-174 (1998), Gaiddon et al, Endocrinology 136(10): 4331-4338 (1995), Hall et al, Nucleic Acids Research 24(6): 1119-1126 (1996); Peterziel et al, Oncogene 18 ( 46): 6322-6329 (1999); and O'Brian, Oncol. Rep. 5(2): 305-309 (1998)). Furthermore, both glycosylation and myristylation are protein modifications that are also associated with cancer and cancer development (see, for example, Dennis et al., Biochem
Biophys. Acta 1473(1):21-34 (1999) ; Raju等人,Exp. Cell Res· 235(1): 145-154 (1997))。醯胺化為亦與癌症及癌症發 142769.doc •53- 201021828 展相關之另一種蛋白質修飾(參見例如Treston等人,儿 Natl. Cancer Inst. Monogr. (13): 169-175 (1992))。 在另一實施例中,本發明之蛋白質包含根據此項技術中 所接受之方法所鑑別的一或多個免疫反應性抗原決定基 (諸如以上所揭示之肽)。可使用特定算法判定CTL抗原決 定基以鑑別58P1D12蛋白質内能夠與特定HLA等位基因(例 如表 IV ; EpimatrixTM&EpimerTM,Brown University,URL brown.edu/Research/TB-HIV_Lab/epimatrix/epimatrix.html ; 及 BIMAS,URL bimas. dcrt.nih.gov/.)最佳結合之肽。此 外,鑑別對HLA分子具有足夠結合親和性且與作為免疫原 性抗原決定基相關之肽的方法已於此項技術中熟知,且不 經過度實驗便可執行。此外,鑑別作為免疫原性抗原決定 基之肽的方法已於此項技術中熟知,且不經過度實驗便可 在活體外或活體内執行。 形成該等抗原決定基之類似物以便調節免疫原性的原理 亦於此項技術中已知。舉例而言,一種原理可自具有CTL 或HTL基元(參見例如表IV之I類HLA及II類HLA基元/超基 元)之抗原決定基開始。抗原決定基係藉由取代一特定位 置處之胺基酸且用針對彼位置所指定之另一胺基酸將其置 換來模擬。舉例而言,基於表IV中所限定之殘基,可將有 害殘基用任何其他有利殘基(諸如較佳殘基)取代;可將欠 佳殘基用較佳殘基取代;或將原先存在之較佳殘基用另— 較佳殘基取代。取代可在肽中之一級錨位或其他位置發 生;參見例如表IV。 142769.doc -54· 201021828 很多參考文獻反映與鑑別及產生所需之蛋白質中之抗原 決定基及其類似物有關的技術。參見例如Chesnut等人之 WO 97/33602 ; Sette, Immunogenetics 1999 50(3-4): 201-212 ; Sette等人,J. Immunol. 2001 166(2): 1389-1397 ;Biophys. Acta 1473(1): 21-34 (1999); Raju et al., Exp. Cell Res. 235(1): 145-154 (1997)). Amidoxime is another protein modification that is also associated with cancer and cancer 142769.doc • 53- 201021828 (see, eg, Treston et al., Natl. Cancer Inst. Monogr. (13): 169-175 (1992)) . In another embodiment, the protein of the invention comprises one or more immunoreactive epitopes (such as the peptides disclosed above) identified according to methods accepted in the art. A specific algorithm can be used to determine the CTL epitope to identify a specific HLA allele within the 58P1D12 protein (eg, Table IV; EpimatrixTM & EpimerTM, Brown University, URL brown.edu/Research/TB-HIV_Lab/epimatrix/epimatrix.html; And BIMAS, URL bimas. dcrt.nih.gov/.) The best combination of peptides. In addition, methods for identifying peptides having sufficient binding affinity for HLA molecules and associated with immunogenic epitopes are well known in the art and can be performed without undue experimentation. Furthermore, methods for identifying peptides that are immunogenic epitopes are well known in the art and can be performed in vitro or in vivo without undue experimentation. The principle of forming analogs of such epitopes to modulate immunogenicity is also known in the art. For example, one principle may begin with an epitope having a CTL or HTL motif (see, for example, class I HLA and class II HLA motifs/supercells of Table IV). An epitope is modeled by substituting an amino acid at a particular position and replacing it with another amino acid designated for that position. For example, based on the residues defined in Table IV, the deleterious residue can be substituted with any other advantageous residue, such as a preferred residue; the poor residue can be substituted with a preferred residue; or the original Preferred residues present are substituted with another preferred residue. Substitutions can occur at a single anchor or other position in the peptide; see, for example, Table IV. 142769.doc -54· 201021828 Many references reflect techniques related to the identification and production of antigenic determinants and their analogues in proteins. See, for example, Chesnut et al., WO 97/33602; Sette, Immunogenetics 1999 50(3-4): 201-212; Sette et al, J. Immunol. 2001 166(2): 1389-1397;
Sidney 等人,Hum. Immunol. 1997 58(1): 12-20 ; Kondo 等 人,Immunogenetics 1997 45(4): 249-258 ; Sidney等人,J. Immunol. 1996 157(8)·· 3480-90 ;及 Falk等人,Nature 351: 290-6 (1991) ; Hunt等人,Science 255: 1261-3 (1992); • Parker 等人,J. Immunol. 149:3580-7 (1992) ; Parker 等 人,J. Immunol. 152:163-75 (1994)) ; Kast 等人,1994 152(8): 3904-12 ; Borras-Cuesta 等人,Hum. Immunol. 2000 61(3): 266-278 ; Alexander 等人,J. Immunol. 2000 164(3); 164(3): 1625-1633 ; Alexander 等人,PMID: 7895164,UI: 95202582 ; O'Sullivan 等人,J. Immunol. 1991 147(8): 2663-2669 ; Alexander等人,Immunity 1994Sidney et al, Hum. Immunol. 1997 58(1): 12-20; Kondo et al, Immunogenetics 1997 45(4): 249-258; Sidney et al, J. Immunol. 1996 157(8)·· 3480- 90; and Falk et al, Nature 351: 290-6 (1991); Hunt et al, Science 255: 1261-3 (1992); • Parker et al, J. Immunol. 149:3580-7 (1992); Parker Et al., J. Immunol. 152: 163-75 (1994)); Kast et al., 1994 152(8): 3904-12; Borras-Cuesta et al., Hum. Immunol. 2000 61(3): 266-278 Alexander et al, J. Immunol. 2000 164(3); 164(3): 1625-1633; Alexander et al, PMID: 7895164, UI: 95202582; O'Sullivan et al, J. Immunol. 1991 147 (8 ): 2663-2669 ; Alexander et al., Immunity 1994
1(9): 751-761 ;及 Alexander 等人,Immunol. Res. 1998 18(2): 79-92 。 i 本發明之相關實施例包括包含表IV(a)、IV(b)、IV(c)、 IV(d)及IV(h)中所列之不同基元及/或一或多個先前所揭示 之預知CTL抗原決定基及/或一或多個此項技術已知之T細 胞結合基元之組合的多狀。較佳實施例在多狀之基元内或 介入序列内不含插入、缺失或取代。此外,在該等基元之 兩側包括多個N末端及/或C末端胺基酸殘基的實施例可為 需要的(例如包括有基元位於其中之多肽架構之較大部 142769.doc -55- 201021828 分)。位於基元兩侧之N末端及/或C末端胺基酸殘基之數目 通常在約1個至約1〇〇個胺基酸殘基、較佳5個至約5〇個胺 基酸殘基之間。 58P1D12相關蛋白質可以多種形式、較佳以經分離形式 呈現。經純化之58P1D12蛋白質分子實質上不含妨礙 58P1D12與抗體、τ細胞或其他配體結合的其他蛋白質或 分子。分離及純化之性質及程度視預定用途而定。 5 8卩1012相關蛋白質之實施例包括經純化之58?1〇12相關 蛋白質及功能性、可溶性58P1D12相關蛋白質。在一實施 例中’功能性、可溶性58P1D12蛋白質或其片段保持與抗 體、T細胞或其他配體結合的能力。 本發明亦提供包含如圖1中所示之58P1D12胺基酸序列 之生物活性片段的58P1D12蛋白質。該等蛋白質呈現起始 58P1D12蛋白質之特性’諸如誘發產生特異性結合與起始 58P1D12蛋白質相關之抗原決定基之抗體的能力;與該等 抗體結合的能力;誘發HTL或CTL活化的能力;及/或被亦 特異性結合起始蛋白質之HTL或(:1^識別的能力。 3有特別令人需之結構的5 8 P1D12相關多狀可使用此項 技術中熟知之多種分析技術預測及/或鑑別,該等分析技 術包括例如 Chou-Fasman、Garnier-Robson ' Kyte-1(9): 751-761; and Alexander et al., Immunol. Res. 1998 18(2): 79-92. i Related embodiments of the invention include different primitives listed in Tables IV(a), IV(b), IV(c), IV(d), and IV(h) and/or one or more prior A polymorphism of a combination of a predicted CTL epitope and/or one or more T cell binding motifs known in the art is disclosed. The preferred embodiment does not contain insertions, deletions or substitutions within the polymorphic motif or within the interventional sequence. Furthermore, embodiments comprising a plurality of N-terminal and/or C-terminal amino acid residues on either side of the motifs may be desirable (e.g., including a larger portion of the polypeptide structure in which the motif is located 142769.doc) -55- 201021828 points). The number of N-terminal and/or C-terminal amino acid residues located on either side of the motif is typically from about 1 to about 1 amino acid residues, preferably from 5 to about 5 amino acid residues. Between the bases. The 58P1D12 related protein can be present in a variety of forms, preferably in isolated form. The purified 58P1D12 protein molecule is substantially free of other proteins or molecules that interfere with the binding of 58P1D12 to antibodies, tau cells or other ligands. The nature and extent of the separation and purification will depend on the intended use. Examples of 5 8卩1012 related proteins include purified 58?1〇12 related proteins and functional, soluble 58P1D12 related proteins. In one embodiment, the functional, soluble 58P1D12 protein or fragment thereof retains the ability to bind to an antibody, T cell or other ligand. The invention also provides a 58P1D12 protein comprising a biologically active fragment of the 58P1D12 amino acid sequence as shown in Figure 1. Such proteins exhibit the properties of the starting 58P1D12 protein 'such as the ability to elicit an antibody that specifically binds to an epitope associated with the initiation of the 58P1D12 protein; the ability to bind to such antibodies; the ability to induce HTL or CTL activation; and / Or the ability to specifically bind to the HTL of the starting protein or the ability to recognize. 3 The 5 8 P1D12-related polymorphism with a particularly desirable structure can be predicted using a variety of analytical techniques well known in the art and/or Identification, such analysis techniques include, for example, Chou-Fasman, Garnier-Robson 'Kyte-
Doohttle、Eisenberg、Karplus-Schultz 或 Jameson-Wolf 分 析方法或基於免疫原性之方法。含有該等結構之片段特別 適用於產生亞單元特異性抗58P1Di2抗體或T細胞或適用 於鑑別結合5 8P1D12之細胞因子。舉例而言,可使用H〇pp, 142769.doc -56- 201021828 Τ·Ρ·及 Woods,K.R·,1981,Proc. Natl. Acad. Sci. U.S.A. 78: 3 824-3 828之方法產生親水性曲線並鑑別免疫原性肽片 段。可使用 Kyte, J.及 Doolittle, R.F., 1982, J. Mol. Biol. 15 7:105-132之方法產生疏水性曲線並鑑別免疫原性肽片 段。可使用 Janin J.,1979, Nature 277: 491-492之方法產生 可達殘基百分比(%)曲線並鑑別免疫原性肽片段。可使用 Bhaskaran R., Ponnuswamy P.K., 1988, Int. J. Pept. Protein Res. 32:242-255之方法產生平均可撓性曲線並鑑別免疫原 ® 性肽片段。可使用 Deleage, G.,Roux B·,1987,Protein Engineering 1:289-294之方法產生β轉角曲線並鑑別免疫原 .性肽片段。 可使用特定算法判定CTL抗原決定基以鑑別58P1D12蛋 白質内能夠與特定HLA等位基因(諸如BIMAS及 S YFPEITHI)最佳結合的肽。為對此進行說明,預測在人 類 I類 MHC分子(例如 HLA-A1、Α2、A3、All、Α24、Β7及 B35)之上下文中所呈現之58P1D12中的肽抗原決定基。特 參 定而言,將58P1D12蛋白質及其他變異體之相關部分的完 整胺基酸序列(亦即,對於I類HLA預測,點突變或外顯子 接點之兩側存在9個側接殘基;且對於II類HLA預測,對應 於彼變異體之點突變或外顯子接點之兩側存在14個側接殘 基)輸入生物資訊學及分子分析章節中所見之HLA肽基元 搜尋算法中。 HLA肽基元搜尋算法係由Ken Parker博士基於特異性肽 序列於I類HLA分子(尤其HLA-A2)之凹槽中的結合所開發 142769.doc -57- 201021828 (參見例如Falk等人,Nature 351: 290-6 (1991) ; Hunt 等 人,Science 255:1261-3 (1992) ; Parker等人,J. Immunol. 149:3580-7 (1992); Parker等人,J. Immunol. 152:163-75 (1994))。此算法容許對完整蛋白質序列中之經預測可結合 HLA-A2及多種其他I類HLA分子之8-mer、9-mer及10-mer 肽進行定位及歸類。多種I類HLA結合肽為8-mer、9-mer、 1 Ο-mer或11 -mer。舉例而言,對於I類HLA-A2,抗原決定 基較佳在位置2含有白胺酸(L)或曱硫胺酸(M)且在C末端含 有纈胺酸(V)或白胺酸(L)(參見例如Parker等人,J· © Immunol. 149:3580-7 (1992))。58P1D12預測結合肽之選定 結果已得到證明。在37°C下,在pH 6.5時,結合分值對應 於含有肽之複合物之解離半衰期估計值。預測具有最高結 合分值的肽可在最長時間内與細胞表面上之I類HL A最緊 密地結合且因此代表供T細胞識別之最佳免疫原性標靶。 肽與HLA等位基因之實際結合可藉由使HL A在抗原加工 缺陷型細胞株T2上之表現穩定來評估(參見例如Xue等人,Doohttle, Eisenberg, Karplus-Schultz or Jameson-Wolf analytical methods or methods based on immunogenicity. Fragments containing such structures are particularly useful for generating subunit specific anti-58P1Di2 antibodies or T cells or for identifying cytokines that bind to 5 8P1D12. For example, the method of H〇pp, 142769.doc -56-201021828 Τ·Ρ· and Woods, KR·, 1981, Proc. Natl. Acad. Sci. USA 78: 3 824-3 828 can be used to produce hydrophilicity. Curve and identify immunogenic peptide fragments. The hydrophobicity profile can be generated and the immunogenic peptide fragments can be identified using the method of Kyte, J. and Doolittle, R. F., 1982, J. Mol. Biol. 15 7: 105-132. The percent residue (%) curve can be generated and the immunogenic peptide fragments can be identified using the method of Janin J., 1979, Nature 277: 491-492. The average flexibility curve can be generated and the immunogenic peptide fragments can be identified using the method of Bhaskaran R., Ponnuswamy P.K., 1988, Int. J. Pept. Protein Res. 32:242-255. The β-turn curve can be generated and the immunogenic peptide fragment can be identified using the method of Deleage, G., Roux B., 1987, Protein Engineering 1: 289-294. A specific algorithm can be used to determine the CTL epitope to identify peptides within the 58P1D12 protein that are optimally associated with a particular HLA allele, such as BIMAS and S YFPEITHI. To illustrate this, peptide epitopes in 58P1D12 presented in the context of human class I MHC molecules (e.g., HLA-A1, Α2, A3, All, Α24, Β7, and B35) are predicted. For the specific reference, the complete amino acid sequence of the relevant part of the 58P1D12 protein and other variants (ie, for the class I HLA prediction, there are 9 flanking residues on either side of the point mutation or exon junction) And for class II HLA predictions, there are 14 flanking residues on either side of the point mutation or exon junction of the variant.) HLA peptide primitive search algorithm as seen in the section on input bioinformatics and molecular analysis. in. The HLA peptide primitive search algorithm was developed by Dr. Ken Parker based on the binding of specific peptide sequences to the grooves of class I HLA molecules (especially HLA-A2) 142769.doc -57- 201021828 (see for example Falk et al., Nature 351: 290-6 (1991); Hunt et al, Science 255: 1261-3 (1992); Parker et al, J. Immunol. 149: 3580-7 (1992); Parker et al, J. Immunol. 163-75 (1994)). This algorithm allows for the localization and categorization of 8-mer, 9-mer and 10-mer peptides in intact protein sequences that are predicted to bind HLA-A2 and various other class I HLA molecules. A variety of class I HLA binding peptides are 8-mer, 9-mer, 1 Ο-mer or 11-mer. For example, for class I HLA-A2, the epitope preferably contains leucine (L) or guanidine thiocyanate (M) at position 2 and valerine (V) or leucine at the C-terminus ( L) (see for example Parker et al, J. Immunol. 149: 3580-7 (1992)). The selection of 58P1D12 predicted binding peptides has been demonstrated. At 37 ° C, at pH 6.5, the binding score corresponds to an estimate of the dissociation half-life of the peptide-containing complex. It is predicted that the peptide with the highest binding score binds most closely to the class I HL A on the cell surface for the longest time and thus represents the optimal immunogenic target for T cell recognition. The actual binding of the peptide to the HLA allele can be assessed by stabilizing the performance of HL A on the antigen-defective cell line T2 (see, for example, Xue et al.
* G* G
Prostate 30:73-8 (1997)及 Peshwa 等人,Prostate 36:129-38 (1998))。特異性肽之免疫原性可藉由在抗原呈現細胞(諸 如樹突狀細胞)存在下刺激CD8 +細胞毒性T淋巴細胞(CTL) 來活體外評估。 應暸解,藉由BIMAS位點、EpimerTM&EpimatrixTM位點 所預測或藉由此項技術中可供利用或將成為此項技術之部 分之I類或II類HLA基元(諸如表IV中所列)所指定的每個抗 原決定基欲「應用於」本發明之58P1D12蛋白質。如本上 142769.doc -58- 201021828 下文中所用,「應用」意謂58P1D12蛋白質可如熟習相關技 術者所瞭解、以可視方法或藉由基於計算機之模式尋找方 法評估。58P1D12蛋白質之具有I類HLA基元且具有8、9、 10或11個胺基酸殘基之每個子序列或具有II類HLA基元且 具有9或9個以上胺基酸殘基之子序列皆屬於本發明之範鳴 内0 III.B) 5 8P1D12相關蛋白質之表現 在以下實例中所述之實施例中,可使58P1D12方便地在 ® 經市售表現載體(諸如具有C末端6XHis及MYC標記之編碼 58P1D12 之 CMV 驅動型表現載體(pCDNA3.1/mycHIS, Invitrogen,或 Tag5, GenHunter Corporation, Nashville TN))轉染之細胞(諸如293T細胞)中受到表現。Tag5載體提 供IgGK分泌信號,使用該igGK分泌信號可有助於在經轉 染之細胞中產生所分泌之58P1D12蛋白質。例如可利用標 準技術、使用鎳管柱純化培養基中所分泌之HIS標記 58P1D12。 ❹ III.C.) 58P1D12相關蛋白質之修飾 58P1D12相關蛋白質之修飾(諸如共價修飾)包括於本發 明之範疇内。一類共價修飾包括使58P1D12多肽之標靶胺 基酸殘基與有機衍生化劑反應,該有機衍生化劑能夠與 58P1D12蛋白質之所選側鏈或N末端殘基或c末端殘基反 應。包括於本發明之範疇内之58P1D12多肽的另一類共價 修飾包含改變本發明之蛋白質之天然糖基化模式。 58P1D12之另一類共價修飾包含以美國專利第4,640,835 142769.doc -59- 201021828 號、第 4,496,689號、第 4,301,144號、第 4,670,417號、第 4,791,192號或第4,179,337號中所闡明之方式使58?1〇12多 肽與多種非蛋白質聚合物(例如聚乙二醇(pEG)、聚丙二醇 或聚環氧烷)中之一種連接。 本發明之58P1D12相關蛋白質亦可經修飾以形成包含與 另一異源多肽或胺基酸序列融合之58P1D12的喪合分子。 該银合分子可以化學或重組方式合成。嵌合分子可具有與 另一腫瘤相關抗原或其片段融合之本發明之蛋白質。或 者,本發明之蛋白質可包含58P1D12序列(胺基酸或核酸) 之片段之融合體,以使得所形成之分子在其整個長度上不 直接與圖1中所示之胺基酸或核酸序列同源。該嵌合分子 可包含58P1D12之多個相同子序列。嵌合分子可包含 58P1D12相關蛋白質與多聚組胺酸抗原決定基標記(其提供 固定鎳可選擇性結合之抗原決定基)、與細胞因子或與生 長因子之融合體。抗原決定基標記一般位於58piD12蛋白 質之胺基末端或缓基末端《在一替代實施例中,傲合分子 可包含58P1D12相關蛋白質與免疫球蛋白或免疫球蛋白之 特定區域的融合體。對於嵌合分子之二價形式(亦稱為 「免疫黏附素」),可與IgG分子之fc區域進行此融合。Ig 融合較佳包括用58P1D12多肽之可溶(跨膜域缺失或失活) 形式取代Ig分子内之至少一個可變區。在一較佳實施例 中,免疫球蛋白融合體包括igG][分子之鉸鏈區、cH2區及 CH3區’或IgGI分子之鉸鏈區、CH1區、CH2區及CH3區。 對於免疫球蛋白融合體之製備,參見例如1995年6月27曰 142769.doc 60 - 201021828 頒布的美國專利第5,428,130號。 III.D.) 58P1D12相關蛋白質之用途 本發明之蛋白質具有多種不同特定用途。由於58piD12 在卵巢癌及其他癌症中受到高度表現,因此可在評估正常 組織對比癌變組織中之58P1D12基因產物之狀態的方法中 使用58P1D12相關蛋白質,從而說明惡性表現型。通常使 用來自5 8P1D12蛋白質之特定區域的多肽評估彼等區域(諸 如含有一或多個基元之區域)中是否存在擾動(諸如缺失、 插入、點突變等)。為評估此區域在正常組織對比癌變組 織中之特徵或針對抗原決定基誘發免疫反應,例示性檢定 使用乾向58P1D12相關蛋白質之抗體或τ細胞,該等 5 8P1D12相關蛋白質包含一或多個内含於58piD12多肽序 列内之生物學基元的胺基酸殘基。或者,使用含有 58P1D12蛋白質中之一或多個生物學基元之胺基酸殘基的 58P1D12相關蛋白質篩檢與58P1D12之區域相互作用的因 子0 58P1D12蛋白質片段/子序列特別適用於產生及表徵結構 域特異性抗體(例如識別58P 1D12蛋白質之胞外或胞内抗原 決定基的抗體),適用於鑑別結合58P1D12或其特定結構域 之藥劑或細胞因子且適用於多種治療性及診斷性背景下, 包括(但不限於)診斷性檢定、癌症疫苗及製備該等疫苗之 方法。 由58P1D12基因或其類似物、同源物或片段編碼之蛋白 質具有多種用途,包括(但不限於)產生抗體及用於鑑別與 142769.doc •61 · 201021828 5 8P1D12基因產物結合之配體及其他藥劑及細胞組分的方 法中。針對58P1D12蛋白質或其片段所產生之抗體適用於 診斷性及預後性檢定;中及以58P1D12蛋白質表現為特徵之 人類癌症(諸如表I栌所列之彼等癌症)之控制的成像方法 中。該等抗體可以紐胞内方式受到表現且可在治療患有該 等癌症之患者之方法·中使用。58P1D12相關核酸或蛋白質 亦用於產生HTL或CTL反應。 可使用適用於偵則58P1D12蛋白質之多種免疫學檢定, 包括(但不限於)各種類型之放射免疫檢定、酶聯免疫吸附 檢定(ELISA)、酶聯兑疫螢光檢定(ELIFA)、免疫細胞化學 方法及其類似方法:。抗體可經標記且用作能夠彳貞測 58P1D12表現細胞之免疫成像試劑(例如在放射性閃爍攝影 成像方法中)。如本文中進一步說明,58P1D12蛋白質亦特 別適用於產生癌症先苗。 IV.) 58P1D12抗體 本發明之另一態樣提供結合5 8P1D12相關蛋白質之抗 體。較佳抗體特異性結合58P1D12相關蛋白質且在生理條 件下不結合(或微弱地結合)並非58P1D12相關蛋白質的狀 或蛋白質。在本上*F文中’生理條件之實例包括:丨)碟酸 鹽緩衝鹽水;2)含有25 mM Tris及150 mM NaCl之Tris緩衝 鹽水;或生理鹽水(0.9% NaCl) ; 4)動物血清,諸如人類血 清;或5)1)至4)之任何組合;此等反應較佳在pH 75或者 在pH 7.0至8.0之範®内或者在pH 6.5至8.5之範圍内進行. 此外,此等反應在4·°C至37。(:之間的溫度下進行。舉例而 142769.doc -62· 201021828 言,結合58P1D12之抗體可結合58P1D12相關蛋白質,諸 如其同源物或類似物。 在一實施例中,本發明包含:[1]包含如SEQ. ID NO: 18 中之第21至第1;33所示或如SEQ. ID NO: 19中之第21至第 134所示之輕鏈可變區序列及如SEQ. ID NO: 17中之第20至 第146所示之重鏈可變區序列的抗體或片段;[2] [1]之抗 體或片段,其中該抗體特異性結合58P1D12蛋白質(圖1); [3] [1]之抗體或片段,其中該抗體抑制腫瘤細胞遷移及侵 W 入;[4] [1]之抗體或片段,其中該抗體包含如SEQ. ID NO: 18中之第21至第239所示或如SEQ. ID NO: 19中之第21至第 240所示的輕鏈序列及包含如SEQ· ID NO: 17中之第20至第 203所示的序列的重鏈序列;編碼[丨^至^]之抗體之輕鏈 或重鏈的聚核苷酸;[6]包含[5]之聚核苷酸的載體;[[7]經 [6]之載體轉染的細胞;[8] [7]之細胞,其中該細胞經包含 編碼[1]至[4]之抗體之輕鏈的聚核苷酸及編碼[丨]至之抗 φ 體之重鏈的聚核苷酸的載體轉染,或經包含編碼[1]至[4] 之抗體之輕鏈的聚核苷酸的載體及包含編碼[丨]至[4]之抗 體之重鏈的聚核苷酸的載體轉染;[9] 一種製備包含如 SEQ. ID NO: 18中之第21至第133或SEQ. ID NO: 19中之第 21至第134所示之輕鏈可變區序列及如SEq· ID no: 17中之 第20至第146所示之重鏈可變區序列的抗體或片段的方 法’該方法包含:i)將[7]之細胞在促進表現該抗體或片段 之條件下培養,及U)自該等細胞中分離抗體或片段,從而 製備该抗體或片段;[1 〇] [9]之方法,其中該抗體包含如 142769.doc -63· 201021828 SEQ_ ID NO: 18中之第21至第239或SEQ. ID NO: 19中之第 21至第240所示的輕鏈序列及包含如SEQ. ID NO: 17中之第 2 0至第2 0 3所示的序列的重鏈序列。 本發明之58P1D12抗體特別適用於癌症(參見例如表丨)診 斷性及預後性檢定及顯影方法中。類似地,該等抗體適用 於卵巢癌及其他癌症之治療、診斷及/或預後,因為 5 8P1D12亦在此等其他癌症中受到表現或過度表現。此 外’細胞内表現之抗體(例如單鏈抗體)在治療上適用於治 療涉及表現58P1D12的癌症,諸如晚期或轉移性卵巢癌或❹ 其他晚期或轉移性癌症。 本發明亦提供適用於偵測及量化58P1D12及突變體 5 8P1D12相關蛋白質之多種免疫檢定。該等檢定視情況可 包含一或多種能夠識別並結合58P1Di2相關蛋白質之 58P1D12抗體。此等檢定可以此項技術中熟知的多種免疫 檢定型式執行,包括(但不限於)各種類型的放射免疫檢 定、酶聯免疫吸附檢定(EUSA)、酶聯免疫螢光檢定 (ELIFA)及其類似檢定。 〇 本發明之免疫非抗體檢定亦包含τ細胞免疫原性檢定(抑 制性或刺激性)以及主要組織相容性複合體(MHC)結合檢 定。 此外,本發明亦提供能夠偵測表現581>11)12之卵巢癌及 其他癌症的免疫成像方法,包括(但不限於)使用經標記之 58P1D12抗體的放射性閃爍攝影成像方法。該等檢定在臨 床上適用於表現58P1D12之癌症(諸如印巢癌)之摘測、監 142769.doc -64 - 201021828 測及預後。 58卩1012抗體亦可在純化58?1012相關蛋白質及分離 5 8P1D12同源物及相關分子之方法中使用。舉例而言,純 化58P1D12相關蛋白質之方法包含:在容許58P1D12抗體 結合58P1D12相關蛋白質之條件下,將已與固體基質偶聯 之58P1D12抗體與含有58P1D12相關蛋白質的溶胞物或其 他溶液一起培育;洗滌固體基質以消除雜質;及將 58P1D12相關蛋白質自偶聯抗體溶離。本發明之58P1D12 ® 抗體之其他用途包括產生模擬58P1D12蛋白質之抗遺傳型 .抗體。 製備抗體之多種方法已於此項技術中熟知。舉例而言, 可藉由使用分離形式或免疫接合形式之58P1D12相關蛋白 質、肽或片段將適當哺乳動物宿主免疫來製備抗體 (Antibodies: A Laboratory Manual,CSH Press,Harlow及 Lane 編(1988),Harlow, Antibodies,Cold Spring Harbor ©Press,NY (1989))。此外,亦可使用58P1D12之融合蛋白 質,諸如58P1D12 GST融合蛋白質。在一特定實施例中, 製備包含圖1之胺基酸序列之全部或大部分的GST融合蛋 白質’接著作為免疫原用於產生適當抗體。在另一實施例 中,合成58P1D12相關蛋白質並作為免疫原使用。 此外,使用此項技術中已知的裸DNA免疫技術(使用或 不使用表現經純化之58P1D12相關蛋白質或58P1D12的細 胞)產生針對所編碼之免疫原的免疫反應(欲回顧,請參見 Donnelly等人 ’ 1997, Ann. Rev. Immunol. 15: 617-648)。 142769.doc -65- 201021828 可分析如圖1中所示之58P1D12蛋白質的胺基酸序列以 選擇58P1D12蛋白質之特定區域以便產生抗體。舉例而 言’利用58P1D12胺基酸序列之疏水性及親水性分析來鑑 別58P1D12結構中之親水性區域。顯示免疫原性結構之 58P1D12蛋白質之區域以及其他區域及結構域可容易地使 用此項技術中已知的多種其他方法加以鑑別,諸如(:}1011-Prostate 30: 73-8 (1997) and Peshwa et al., Prostate 36: 129-38 (1998)). The immunogenicity of a specific peptide can be assessed in vitro by stimulating CD8+ cytotoxic T lymphocytes (CTL) in the presence of antigen presenting cells such as dendritic cells. It is understood that Class I or Class II HLA motifs (such as those listed in Table IV) are predicted by BIMAS sites, EpimerTM & EpimatrixTM sites or by the technology available or to be part of this technology. Each of the epitopes specified is intended to be "applied" to the 58P1D12 protein of the present invention. As used hereinafter, "application" means that the 58P1D12 protein can be evaluated by a method known to those skilled in the art, visually or by a computer-based pattern finding method. 58P1D12 protein having a class I HLA motif and having each subsequence of 8, 9, 10 or 11 amino acid residues or a subsequence having a class II HLA motif and having 9 or more amino acid residues In the examples described in the following examples, 58P1D12 can be conveniently placed on a commercially available expression vector (such as having a C-terminal 6XHis and MYC marker). The CMV-driven expression vector (pCDNA3.1/mycHIS, Invitrogen, or Tag5, GenHunter Corporation, Nashville TN) encoding 58P1D12 was expressed in transfected cells (such as 293T cells). The Tag5 vector provides an IgGK secretion signal, and the use of the igGK secretion signal can contribute to the production of the secreted 58P1D12 protein in the transfected cells. For example, the HIS marker 58P1D12 secreted in the culture medium can be purified using a standard column using a standard technique. ❹ III.C.) Modification of 58P1D12 Related Proteins Modifications of 58P1D12 related proteins, such as covalent modifications, are included within the scope of the present invention. One type of covalent modification involves reacting a target amino acid residue of a 58P1D12 polypeptide with an organic derivatizing agent capable of reacting with a selected side chain or an N-terminal residue or a c-terminal residue of the 58P1D12 protein. Another type of covalent modification of the 58P1D12 polypeptide encompassed within the scope of the invention comprises altering the native glycosylation pattern of the protein of the invention. Another type of covalent modification of 58P1D12 is disclosed in U.S. Patent Nos. 4,640,835, 142, 769, doc-59-2010, 218, 218, 4, 496, 689, 4, 301, 144, 4, 670, 417, 4, 791, 192, or 4, 179, 337. This allows the 58?1?12 polypeptide to be linked to one of a variety of non-proteinaceous polymers such as polyethylene glycol (pEG), polypropylene glycol or polyalkylene oxide. The 58P1D12 associated protein of the invention may also be modified to form a fungal molecule comprising 58P1D12 fused to another heterologous polypeptide or amino acid sequence. The silvery molecule can be synthesized chemically or recombinantly. A chimeric molecule can have a protein of the invention fused to another tumor associated antigen or fragment thereof. Alternatively, the protein of the invention may comprise a fusion of a fragment of the 58P1D12 sequence (amino acid or nucleic acid) such that the molecule formed is not directly related to the amino acid or nucleic acid sequence shown in Figure 1 over its entire length. source. The chimeric molecule may comprise a plurality of identical subsequences of 58P1D12. The chimeric molecule may comprise a fusion of a 58P1D12 associated protein with a polyhistidine epitope tag (which provides an immobilized nickel selective binding epitope), a cytokine or a growth factor. The epitope tag is typically located at the amino terminus or slow terminus of the 58 piD12 protein. In an alternate embodiment, the agonist molecule may comprise a fusion of a 58P1D12 associated protein with a particular region of an immunoglobulin or immunoglobulin. For the bivalent form of the chimeric molecule (also known as "immunoadhesin"), this fusion can be made with the fc region of the IgG molecule. Preferably, the Ig fusion comprises replacing at least one variable region within the Ig molecule with a soluble (transmembrane domain deletion or inactivation) form of the 58P1D12 polypeptide. In a preferred embodiment, the immunoglobulin fusion comprises igG] [hinge region of the molecule, cH2 region and CH3 region] or the hinge region, CH1 region, CH2 region and CH3 region of the IgGI molecule. For the preparation of immunoglobulin fusions, see, e.g., U.S. Patent No. 5,428,130, issued June 27, 1972, to s. III.D.) Use of 58P1D12 Related Proteins The proteins of the present invention have a variety of different specific uses. Since 58 piD12 is highly expressed in ovarian cancer and other cancers, the 58P1D12-related protein can be used in a method for assessing the state of the 58P1D12 gene product in normal tissues versus cancerous tissues, thereby indicating a malignant phenotype. Polypeptides from specific regions of the 58P1D12 protein are typically used to assess the presence or absence of perturbations (such as deletions, insertions, point mutations, etc.) in those regions, such as regions containing one or more motifs. To assess the characteristics of this region in normal tissue versus cancerous tissue or to induce an immune response against an epitope, exemplary assays use antibodies or tau cells from the 58P1D12-related protein, which contain one or more inclusions. An amino acid residue of a biological motif within the 58 piD12 polypeptide sequence. Alternatively, the 58P1D12-related protein screen containing the amino acid residue of one or more biological motifs in the 58P1D12 protein is screened for a factor 0 58P1D12 protein fragment/subsequence that interacts with the region of 58P1D12 and is particularly useful for generating and characterizing structures. Domain-specific antibodies (eg, antibodies that recognize the extracellular or intracellular epitope of the 58P 1D12 protein) are useful for identifying agents or cytokines that bind to 58P1D12 or a particular domain thereof and are suitable for use in a variety of therapeutic and diagnostic settings, These include, but are not limited to, diagnostic assays, cancer vaccines, and methods of preparing such vaccines. A protein encoded by the 58P1D12 gene or an analog, homolog or fragment thereof has a variety of uses including, but not limited to, production of antibodies and ligands for identifying binding to the 142769.doc • 61 · 201021828 5 8P1D12 gene product and others In the method of the agent and the cellular component. Antibodies raised against the 58P1D12 protein or fragment thereof are useful in diagnostic and prognostic assays; in imaging methods controlled by human cancers characterized by 58P1D12 protein expression, such as those listed in Table I(R). Such antibodies can be expressed in an intracellular manner and can be used in methods for treating patients suffering from such cancers. The 58P1D12 related nucleic acid or protein is also used to generate HTL or CTL responses. A variety of immunological assays for the detection of 58P1D12 proteins can be used, including but not limited to various types of radioimmunoassay, enzyme-linked immunosorbent assay (ELISA), enzyme-linked immunofluorescence assay (ELIFA), immunocytochemistry Methods and similar methods: The antibody can be labeled and used as an immunological imaging reagent capable of detecting 58P1D12 expressing cells (e.g., in a radioactive scintigraphy imaging method). As further illustrated herein, the 58P1D12 protein is also particularly useful for the production of cancer seedlings. IV.) 58P1D12 Antibody Another aspect of the invention provides an antibody that binds to a 5 8 P1D12 associated protein. Preferably, the antibody specifically binds to a 58P1D12-related protein and does not bind (or weakly bind) under physiological conditions to a protein or protein that is not a 58P1D12-related protein. Examples of physiological conditions include: 丨 disc salt buffered saline; 2) Tris buffered saline containing 25 mM Tris and 150 mM NaCl; or physiological saline (0.9% NaCl); 4) animal serum, Such as human serum; or 5) any combination of 1) to 4); such reactions are preferably carried out at pH 75 or in the range of pH 7.0 to 8.0 or in the range of pH 6.5 to 8.5. Furthermore, such reactions At 4 ° ° C to 37. (: Between the temperatures of 142769.doc-62.201021828, an antibody that binds to 58P1D12 can bind to a 58P1D12-related protein, such as a homolog or analog thereof. In one embodiment, the invention comprises: 1] comprises a light chain variable region sequence as shown in SEQ ID NO: 18, 21 to 1; 33 or as shown in SEQ. ID NO: 19, 21 to 134, and SEQ. ID NO: An antibody or fragment of the heavy chain variable region sequence shown in the 20th to 146th of the invention; [2] the antibody or fragment of [1], wherein the antibody specifically binds to the 58P1D12 protein (Fig. 1); The antibody or fragment of [1], wherein the antibody inhibits tumor cell migration and invasion; [4] the antibody or fragment of [4], wherein the antibody comprises 21 to 239 of SEQ. ID NO: 18. a light chain sequence as shown in SEQ ID NO: 19, and a heavy chain sequence comprising the sequence shown in SEQ ID NO: 17 from 20 to 203; encoding [ a light chain or heavy chain polynucleotide of an antibody of 丨^ to ^]; [6] a vector comprising the polynucleotide of [5]; [[7] a cell transfected with the vector of [6]; 8] [7] the cell in which the cell Transfection of a polynucleotide comprising a light chain encoding the antibody of [1] to [4] and a polynucleotide encoding a heavy chain of [丨] to the anti-φ body, or comprising the coding [1] to [4] a vector of a polynucleotide of a light chain of an antibody and a vector comprising a polynucleotide encoding a heavy chain of an antibody of [丨] to [4]; [9] a preparation comprising SEQ. ID The light chain variable region sequences of 21st to 133th of NO: 18 or 21st to 134th of SEQ. ID NO: 19 and 20th to 146th of SEq·ID no: 17 Method of antibody or fragment of a heavy chain variable region sequence 'This method comprises: i) cultivating the cells of [7] under conditions which promote expression of the antibody or fragment, and U) isolating antibodies or fragments from such cells , the method of preparing the antibody or fragment; [1] [9], wherein the antibody comprises, for example, 142769.doc-63·201021828 SEQ ID NO: 18, 21 to 239 or SEQ. ID NO: 19 The light chain sequence shown in the 21st to 240th and the heavy chain sequence comprising the sequence shown as 20th to 20th in SEQ. ID NO: 17. The 58P1D12 antibody of the present invention is particularly useful in the diagnosis and development of cancer (see, e.g., for example) diagnostic and prognostic methods. Similarly, such antibodies are useful in the treatment, diagnosis, and/or prognosis of ovarian cancer and other cancers because 5 8P1D12 is also manifested or overexpressed in such other cancers. Further 'intracellularly expressed antibodies (e. g., single chain antibodies) are therapeutically useful for treating cancers that are indicative of 58P1D12, such as advanced or metastatic ovarian cancer or other advanced or metastatic cancer. The invention also provides various immunoassays suitable for detecting and quantifying 58P1D12 and mutant 5 8P1D12 related proteins. Such assays may optionally include one or more 58P1D12 antibodies that recognize and bind to the 58P1Di2-related protein. Such assays can be performed in a variety of immunoassay formats well known in the art including, but not limited to, various types of radioimmunoassays, enzyme-linked immunosorbent assays (EUSA), enzyme-linked immunofluorescence assays (ELIFA), and the like. Verification.免疫 The immunological non-antibody assay of the invention also comprises a tau cell immunogenicity assay (inhibitory or irritating) and a major histocompatibility complex (MHC) binding assay. In addition, the present invention also provides immunoimaging methods capable of detecting ovarian cancer and other cancers exhibiting 581 > 11) 12, including, but not limited to, radioactive scintigraphy imaging methods using labeled 58P1D12 antibodies. These tests are available on the spot for the detection of 58P1D12 cancers (such as Insect Cancer), and the 142769.doc -64 - 201021828 and prognosis. The 58卩1012 antibody can also be used in methods for purifying 58?1012 related proteins and isolating 5<8>P1D12 homologs and related molecules. For example, a method of purifying a 58P1D12-related protein comprises: cultivating a 58P1D12 antibody that has been conjugated to a solid substrate with a lysate or other solution containing a 58P1D12-related protein, while allowing the 58P1D12 antibody to bind to the 58P1D12-related protein; A solid matrix to eliminate impurities; and a 58P1D12 related protein is detached from the coupled antibody. Other uses of the 58P1D12 ® antibodies of the invention include the production of anti-genotype antibodies that mimic the 58P1D12 protein. A variety of methods for preparing antibodies are well known in the art. For example, antibodies can be prepared by immunizing a suitable mammalian host using 58P1D12-related proteins, peptides or fragments in isolated or immunoconjugated form (Antibodies: A Laboratory Manual, CSH Press, Harlow and Lane ed. (1988), Harlow , Antibodies, Cold Spring Harbor © Press, NY (1989)). In addition, a 58P1D12 fusion protein such as the 58P1D12 GST fusion protein can also be used. In a specific embodiment, a GST fusion protein comprising all or a majority of the amino acid sequence of Figure 1 is prepared as an immunogen for the production of a suitable antibody. In another embodiment, a 58P1D12 related protein is synthesized and used as an immunogen. In addition, the naked DNA immunization technique known in the art (with or without the use of purified 58P1D12-related proteins or 58P1D12 cells) produces an immune response against the encoded immunogen (for review, see Donnelly et al.) '1997, Ann. Rev. Immunol. 15: 617-648). 142769.doc -65- 201021828 The amino acid sequence of the 58P1D12 protein as shown in Figure 1 can be analyzed to select a specific region of the 58P1D12 protein to produce antibodies. For example, the hydrophobicity and hydrophilicity analysis of the 58P1D12 amino acid sequence was used to identify the hydrophilic regions in the 58P1D12 structure. The region of the 58P1D12 protein displaying the immunogenic structure, as well as other regions and domains, can be readily identified using a variety of other methods known in the art, such as (:}1011-
Fasman、Garnier-Robson、Kyte-Doolittle、Eisenberg、 1^印11^-8〇1111112或以11^8〇11-\¥〇1£分析法。可使用11〇?卩,1\?. 及 Woods, K.R·, 1981,Proc. Natl. Acad. Sci. U.S.A. 78:3824-3828之方法產生親水性曲線。可使用Kyte, J.及 Doolittle, R.F.,1982, J. Mol. Biol. 157:105-132之方法產生 疏水性曲線。可使用 Janin J·,1979, Nature 277:491-492之 方法產生可達殘基百分比(%)曲線。可使用Bhaskaran R., Ponnuswamy P.K., 1988, Int. J. Pept. Protein Res. 32:242-255之方法產生平均可挽性曲線。可使用Deleage, G.,Roux B·,1987’ Protein Engineering 1:289-294之方法產生 β轉角 曲線。因此’藉由此等程式或方法中之任一種鑑別的各區 域均屬於本發明之範疇内。產生58P1D12抗體之較佳方法 經由本文中所提供之實例進一步說明。製備用作免疫原之 蛋白質或多肽的方法已於此項技術中熟知。製備蛋白質與 載體(諸如B S A、KLH或其他載體蛋白)之免疫原性接合物 的方法亦於此項技術中熟知。在有些情況下,使用直接接 合’其使用例如碳化二亞胺試劑;在其他情況下,連接試 劑(諸如Pierce Chemical Co·, Rockford,IL供應的彼等連接 142769.doc -66- 201021828 試劑)有效。如此項技術中所瞭解,通常藉由在適當時期 内注射且使用適當佐劑來執行58P1D12免疫原之投與。在 免疫時程期間,可量測抗體效價以判定是否形成足夠的抗 體。 可藉由此項技術中熟知的多種方式製備58P1D12單株抗 體。舉例而言,眾所周知,使用Kohler及Milstein之標準 融合瘤技術或使抗體產生B細胞永生化之修飾技術來製備 分泌所要單株抗體之永生化細胞株。藉由免疫檢定法筛檢 _ 为泌所要抗體之永生化細胞株,其中抗原為5 8P1D12相關 蛋白質。當鑑別適當的永生化細胞培養物時,可繁殖細胞 並自活體外培養物或腹水產生抗體。 本發明之抗體或片段亦可藉由重組方式製備。特異性結 合5 8P1D12蛋白質之所要區域的區域亦可在來源於多種物 種之谈合抗體或互補判定區(CDR)移植抗體之背景下製 備。亦可製備人源化或人類58P1D12抗體,且較佳用於治 ^ 療背景。藉由將一或多個非人類抗體CDR取代為相應人類 抗體序列來使鼠科動物抗體及其他非人類抗體人源化的方 法已熟知(參見例如Jones等人,1986,Nature 321: 522-525 ; Riechmann 等人,1988,Nature 332: 323-327 ; Verhoeyen等人,1988,Science 239: 1534-1536)。亦參見 Carter等人,1993,Proc. Natl. Acad· Sci. USA 89: 4285及 Sims等人,1993,J. Immunol. 151: 2296。 製備完全人類單株抗體之方法包括噬菌體呈現法及轉殖 基因法(欲回顧,請參見Vaughan等人,1998,Nature 142769.doc -67- 201021828Fasman, Garnier-Robson, Kyte-Doolittle, Eisenberg, 1^印11^-8〇1111112 or 11^8〇11-\¥〇1 £ analysis. The hydrophilicity curve can be produced using the method of 11 〇?卩, 1\?. and Woods, K.R., 1981, Proc. Natl. Acad. Sci. U.S.A. 78:3824-3828. The hydrophobicity curve can be produced using the method of Kyte, J. and Doolittle, R. F., 1982, J. Mol. Biol. 157: 105-132. The percent residue (%) curve can be generated using the method of Janin J., 1979, Nature 277:491-492. The average pullability curve can be generated using the method of Bhaskaran R., Ponnuswamy P.K., 1988, Int. J. Pept. Protein Res. 32:242-255. The beta angle curve can be generated using the method of Deleage, G., Roux B., 1987' Protein Engineering 1: 289-294. Therefore, each of the regions identified by any of the programs or methods is within the scope of the present invention. A preferred method of producing the 58P1D12 antibody is further illustrated by the examples provided herein. Methods of preparing proteins or polypeptides for use as immunogens are well known in the art. Methods of preparing immunogenic conjugates of proteins with vectors such as B S A, KLH or other carrier proteins are also well known in the art. In some cases, direct bonding is used, which uses, for example, a carbodiimide reagent; in other cases, linking reagents (such as those supplied by Pierce Chemical Co., Rockford, IL, 142769.doc-66-201021828) are effective. . As is understood in the art, administration of the 58P1D12 immunogen is typically performed by injection over a suitable period of time and using an appropriate adjuvant. Antibody titers can be measured during the immune time course to determine if sufficient antibodies are formed. The 58P1D12 monoclonal antibody can be prepared by a variety of means well known in the art. For example, it is known to prepare an immortalized cell line secreting a desired monoclonal antibody using a standard fusion tumor technique of Kohler and Milstein or a modification technique for immortalizing an antibody to produce B cells. Screening by immunoassay _ is an immortalized cell line of antibodies required for secretion, wherein the antigen is a 5 8P1D12-related protein. When a suitable immortalized cell culture is identified, the cells can be propagated and antibodies produced from the in vitro culture or ascites. The antibodies or fragments of the invention may also be prepared by recombinant means. The region that specifically binds to the desired region of the 5 8P1D12 protein can also be prepared in the context of a multi-species antibody or complementarity determining region (CDR)-implanted antibody. Humanized or human 58P1D12 antibodies can also be prepared and are preferred for use in therapeutic settings. Methods for humanizing murine antibodies and other non-human antibodies by substituting one or more non-human antibody CDRs into corresponding human antibody sequences are well known (see, for example, Jones et al., 1986, Nature 321: 522-525). Riechmann et al., 1988, Nature 332: 323-327; Verhoeyen et al., 1988, Science 239: 1534-1536). See also Carter et al, 1993, Proc. Natl. Acad. Sci. USA 89: 4285 and Sims et al, 1993, J. Immunol. 151: 2296. Methods for preparing fully human monoclonal antibodies include phage display and transgenic methods (for review, see Vaughan et al., 1998, Nature 142769.doc -67-201021828).
Biotechnology 16: 535-539)。利用選瘦技術採用大型人類 Ig基因組合庫(亦即噬菌體呈現)可產生完全人類58P1D12 單株抗體(Griffiths 及 Hoogenboom,Building an vz7ro immune system: human antibodies from phage display libraries ° 在 Protein Engineering of Antibody Molecules for Prophylactic and Therapeutic Applications in Man, Clark, M.(編),Nottingham Academic,第 45-64 頁(1993)中; Burton 及 Barbas,Human Antibodies from combinatorial libraries·同上,第65-82頁)。亦可使用經工程改造以含有 © 人類免疫球蛋白基因座之轉殖基因小鼠製備完全人類 5 8P1D12單株抗體,如以下文獻中所述:PCT專利申請案 WO 98/24893, Kucherlapati及 Jakobovits等人,1997年 12月 3 曰公布(亦參見 Jakobovits,1998,Exp. Opin· Invest. Drugs 7(4): 607-614 ; 2000年12月19日頒布的美國專利 6,162,963 ; 2000 年 11 月 12 曰頒布的 6,150,584 ;及 2000 年 9 月5日頒布的6,114598)。此方法可避免噬菌體呈現技術所Biotechnology 16: 535-539). Using the large-scale human Ig gene combinatorial library (also known as phage display) to generate fully human 58P1D12 monoclonal antibodies (Griffiths and Hoogenboom, Building an vz7ro immune system: human antibodies from phage display libraries ° in Protein Engineering of Antibody Molecules for Prophylactic and Therapeutic Applications in Man, Clark, M. (ed.), Nottingham Academic, pp. 45-64 (1993); Burton and Barbas, Human Antibodies from combinatorial libraries (ibid., pp. 65-82). Fully human 5 8P1D12 monoclonal antibodies can also be prepared using a transgenic mouse engineered to contain the human immunoglobulin locus, as described in the following documents: PCT Patent Application WO 98/24893, Kucherlapati and Jakobovits, et al. Person, published on December 3, 1997 (see also Jakobovits, 1998, Exp. Opin·Invest. Drugs 7(4): 607-614; US Patent 6,162,963, issued December 19, 2000; November 12, 2000 6,150,584 issued; and 6,114,598 issued on September 5, 2000). This method can avoid phage display technology
A 需之活體外操控,且可有效地製備出高親和性可靠性人類 W 抗體。 58P1D12抗體與5 8P1D12相關蛋白質之反應性可視情況 使用58P1D12相關蛋白質、58P1D12表現細胞或其萃取物 藉由多種熟知方式建立,該等熟知方式包括西方墨點法、 免疫沈澱法、ELISA及FACS分析法。58P1D12抗體或其片 段可用可偵測標誌標記或接合至第二分子。適當的可偵測 標誌包括(但不限於)放射性同位素、螢光化合物、生物發 142769.doc -68- 201021828 光化合物、化學發光化合物、金屬螯合劑或酵素。此外, 對兩個或兩個以上58P1D12抗原決定基具有特異性之雙特 異性抗體可利用此項技術中通常已知的方法產生。同二聚 體抗體亦可藉由此項技術中已知的交聯技術產生(例如 Wolff等人,Cancer Res. 53: 2560-2565)。 在一個實施例中,本發明提供由融合瘤產生、經鐘別為 Ha8-4c4.1之單株抗體,該融合瘤已於2008年8月5日(經由 聯邦快遞(Federal Express))送達美國菌種保存中心 (American Type Culture Collection ; ATCC)(郵箱 1549, Manassas,VA 20108)且指定寄存編號PTA-9404。 V.) 58P1D12細胞免疫反應 Τ細胞識別抗原之機制業已描述。本發明之有效肽抗原 決定基疫苗組合物在極其廣泛之全世界人口中可誘發治療 性或預防性免疫反應。為瞭解本發明組合物誘發細胞免疫 反應的價值及功效起見,本發明提供對免疫學相關技術之 簡單回顧。 HLΑ分子與肽抗原之複合物充當由HL Α限制性Τ細胞識 別之配體(Buus, S.等人,Cell 47:1071, 1986 ; Babbitt,B. P.等人,Nature 3 17:359,1985 ; Townsend,A.及 Bodmer, H., Annu. Rev. Immunol. 7:601, 1989 I Germain, R. N., Annu. Rev. Immunol. 11:403, 1993)。經由對單一胺基酸取 代之抗原類似物的研究及内源性結合之天然加工肽的定 序,對應於特異性結合HLA抗原分子所需之基元的關鍵性 殘基已得到鑑別且列於表IV中(亦參見例如Southwood等 142769.doc -69- 201021828 人,J. Immunol. 160:3363,1998 ; Rammensee 等人, Immunogenetics 41:178, 1995 ; Rammensee 等人, SYFPEITHI,經由全,球資訊網 URL (134.2.96.221/ scripts.hlaserver.dll/home.htm)獲得;Sette, A.及 Sidney, J.A requires in vitro manipulation and can efficiently produce high affinity reliability human W antibodies. The reactivity of the 58P1D12 antibody with the 5 8P1D12-related protein may be established by using a 58P1D12-related protein, a 58P1D12-expressing cell or an extract thereof by various well-known methods including Western blotting, immunoprecipitation, ELISA, and FACS analysis. . The 58P1D12 antibody or fragment thereof can be labeled with a detectable label or ligated to a second molecule. Suitable detectable markers include, but are not limited to, radioisotopes, fluorescent compounds, biological hair 142769.doc -68- 201021828 photocompounds, chemiluminescent compounds, metal chelators or enzymes. Furthermore, bispecific antibodies which are specific for two or more 58P1D12 epitopes can be produced using methods generally known in the art. Homodimeric antibodies can also be produced by cross-linking techniques known in the art (e.g., Wolff et al, Cancer Res. 53: 2560-2565). In one embodiment, the invention provides a monoclonal antibody produced by a fusion tumor that has been labeled Ha8-4c4.1, which was delivered to the United States on August 5, 2008 (via Federal Express) The American Type Culture Collection (ATCC) (mail 1549, Manassas, VA 20108) and the registration number PTA-9404. V.) 58P1D12 cellular immune response The mechanism by which sputum cells recognize antigen has been described. The potent peptide epitope determinant vaccine compositions of the invention can elicit a therapeutic or prophylactic immune response in an extremely wide population of the world. In order to understand the value and efficacy of the compositions of the invention to induce cellular immune responses, the present invention provides a brief review of immunologically relevant techniques. The complex of the HL(R) molecule and the peptide antigen acts as a ligand recognized by HL(R) restricted sputum cells (Buus, S. et al, Cell 47: 1071, 1986; Babbitt, BP et al, Nature 3 17: 359, 1985; Townsend , A. and Bodmer, H., Annu. Rev. Immunol. 7:601, 1989 I Germain, RN, Annu. Rev. Immunol. 11:403, 1993). Through the study of single amino acid substituted antigen analogs and the sequencing of endogenously bound natural processing peptides, key residues corresponding to the motifs required for specific binding to HLA antigen molecules have been identified and listed In Table IV (see also, for example, Southwood et al., 142, 769. doc-69-201021828, J. Immunol. 160: 3363, 1998; Rammensee et al, Immunogenetics 41: 178, 1995; Rammensee et al., SYFPEITHI, via the full, ball information Web URL (134.2.96.221/scripts.hlaserver.dll/home.htm) obtained; Sette, A. and Sidney, J.
Curr. Opin. Immunol. 10: 478,1998 ; Engelhard, V. H.,Curr. Opin. Immunol. 10: 478, 1998; Engelhard, V. H.,
Curr. Opin. Immunol. 6:13,1994 ; Sette, A_及 Grey, Η. M.,Curr. Opin. Immunol. 6:13,1994; Sette, A_ and Grey, Η. M.,
Curr. Opin. Immunol. 4:79, 1992 ; Sinigaglia,F‘及 Hammer, J. Curr. Biol. 6:52, 1994 ; Ruppert等人,Cell 74: 929-937, 1993 ; Kondo等人,J. Immunol. 155: 4307-4312,1995 ; ❹Curr. Opin. Immunol. 4:79, 1992; Sinigaglia, F' and Hammer, J. Curr. Biol. 6:52, 1994; Ruppert et al., Cell 74: 929-937, 1993; Kondo et al., J. Immunol. 155: 4307-4312, 1995; ❹
Sidney等人,J_ Immunol. 157: 3480-3490,1996 ; Sidney等 人,Human Immunol. 45: 79-93,1996 ; Sette, A.及 Sidney, J. Immunogenetics 1999 年 11 月;50(3-4):201-12, Review) ° 此外,HLA-肽複合物之X射線結晶學分析已揭示位於 HLA分子之肽結合裂隙/凹槽内、以等位基因特異性模式 容納由肽配體攜帶之殘基的袋囊;此等殘基又決定其所存 在於其中之肽之HLA結合能力。(參見例如Madden,D.R. ® Annu. Rev. Immunol. 13:5 87, 1995 ; Smith等人,Immunity 4:203, 1996,· Fremont等人,Immunity 8:305, 1998 ; Stern 等人,Structure 2:245,1994 ; Jones, E.Y. Curr. Opin. Immunol. 9:75, 1997 ; Brown, J. H.等人,Nature 364:33, 1993 ; Guo, H. C.等人,Proc. Natl. Acad. Sci. USA 90:8053,1993 ; Guo, H. C·等人,Nature 360:364, 1992 ; Silver, M. L.等人,Nature 360:367, 1992 ; Matsumura, M. 142769.doc -70- 201021828 等人,Science 257:927, 1992 ; Madden 等人,Cell 70:1035, 1992 ; Fremont, D. H.等人,Science 257:919, 1992 ; Saper, M. A. , Bjorkman, P. J.AWiley, D. C., J. Mol. Biol. 219:277, 1991)。 因此,I類及II類等位基因特異性HLA結合基元或I類或II 類超基元之定義容許對蛋白質内與結合特定HLA抗原杻關 之區域進行鑑別。 因此,已藉由HLA基元鑑別方法鑑別基於抗原決定基之 ® 疫苗的候選者;該等候選者可藉由HLA肽結合檢定進一步 評估以測定抗原決定基及其相應HLA分子之結合親和性 及/或結合時間。可執行其他驗證性工作以在此等候選疫 苗當中選擇在群體覆蓋率及/或免疫原性方面具有較佳特 徵的抗原決定基。 可使用多種策略評估細胞免疫原性,包括: 1) 評估來自正常個體之初級T細胞培養物(參見例如Sidney et al, J_ Immunol. 157: 3480-3490, 1996; Sidney et al, Human Immunol. 45: 79-93, 1996; Sette, A. and Sidney, J. Immunogenetics November 1999; ): 201-12, Review) ° In addition, X-ray crystallographic analysis of HLA-peptide complexes has revealed that it is located in the peptide-binding cleft/groove of HLA molecules, and is housed in peptide alleles in an allele-specific pattern. The pocket of the residue; these residues in turn determine the HLA binding capacity of the peptide in which it is present. (See, for example, Madden, DR ® Annu. Rev. Immunol. 13:5 87, 1995; Smith et al, Immunity 4:203, 1996, Fremont et al, Immunity 8:305, 1998; Stern et al., Structure 2: 245, 1994; Jones, EY Curr. Opin. Immunol. 9:75, 1997; Brown, JH et al, Nature 364:33, 1993; Guo, HC et al, Proc. Natl. Acad. Sci. USA 90:8053 , 1993; Guo, H. C. et al., Nature 360: 364, 1992; Silver, ML et al, Nature 360: 367, 1992; Matsumura, M. 142769.doc -70-201021828 et al., Science 257:927 , 1992; Madden et al., Cell 70: 1035, 1992; Fremont, DH et al., Science 257:919, 1992; Saper, MA, Bjorkman, PJA Wiley, DC, J. Mol. Biol. 219:277, 1991) . Thus, the definition of class I and class II allele-specific HLA binding motifs or class I or class II supermotifs allows for the identification of regions within a protein that bind to a particular HLA antigen. Therefore, candidates for epitope-based vaccines have been identified by HLA motif identification methods; such candidates can be further evaluated by HLA peptide binding assays to determine the binding affinity of the epitope and its corresponding HLA molecule and / or combined time. Other confirmatory work can be performed to select among these candidate vaccines epitopes that have better characteristics in terms of population coverage and/or immunogenicity. Cellular immunogenicity can be assessed using a variety of strategies, including: 1) Assess primary T cell cultures from normal individuals (see eg
Wentworth, P. Α·等人,Mol. Immunol. 32:603, 1995 ;Wentworth, P. Α· et al, Mol. Immunol. 32:603, 1995;
Celis,E.等人,Proc. Natl. Acad. Sci. USA 91:2105, 1994 ; Tsai, V.等人,J. Immunol. 158:1796, 1997 ; Kawashima, I. 等人,Human Immunol. 59:1, 1998)。此程序包括在數週時 期内,在抗原呈現細胞存在下,在活體外用測試肽刺激來 自正常個體之周圍血液淋巴細胞(PBL)。對肽特異之T細胞 在此期間變得活化且可使用例如涉及肽致敏標靶細胞之淋 巴因子釋放檢定或51Cr釋放檢定予以偵測。 2) HLA轉殖基因小鼠之免疫(參見例如Wentworth,P. A. 142769.doc -71 · 201021828 等人,J. Immunol. 26:97,1996 ; Wentworth, P. A.等人, Int. Immunol. 8:651, 1996 ; Alexander, J.等人,】·Celis, E., et al., Proc. Natl. Acad. Sci. USA 91:2105, 1994; Tsai, V. et al., J. Immunol. 158:1796, 1997; Kawashima, I. et al., Human Immunol. 59 :1, 1998). This procedure involves stimulating peripheral blood lymphocytes (PBL) from a normal subject with a test peptide in vitro in the presence of antigen presenting cells over a period of several weeks. The peptide-specific T cells become activated during this period and can be detected using, for example, a lymphokine factor release assay or a 51Cr release assay involving a peptide-sensitized target cell. 2) Immunization of HLA transgenic mice (see for example Wentworth, PA 142769. doc-71 201023228 et al, J. Immunol. 26:97, 1996; Wentworth, PA et al, Int. Immunol. 8:651, 1996 ; Alexander, J. et al.,
Immunol. 159:4753, 1997)。舉例而言,在該等方法中,將 不完全弗氏佐劑(incomplete Freund's adjuvant)中的肽皮下 投與HLA轉殖基因小鼠中。免疫數週後,將脾細胞移除且 在測試肽存在下在活體外培養約一週。使用例如涉及肽致 敏標把細胞及表現内源產生之抗原之標乾細胞的5 1 Cr釋放 檢定偵測肽特異性T細胞。 3)驗證來自已經有效疫苗接種之免疫個體及/或來自慢性 疾病患者的回憶T細胞反應(參見例如Rehermann, B.等人, J. Exp. Med. 181:1047,1995 ; Doolan,D. L.等人, Immunity 7:97, 1997 ; Bertoni,R.等人,J. Clin. Invest. 100:503, 1997 ; Threlkeld, S. C.等人,J. Immunol. 159:1648, 1997 ; Diepolder,Η. M.等人,J. Virol· 71:6011, 1997)。因此,藉由培養來自因疾病而曝露於抗原且因此 已「天然」產生免疫反應之個體的PBL或培養來自已針對 抗原進行疫苗接種之患者的PBL來偵測回憶反應。將來自 個體的PBL在測試肽加抗原呈現細胞(APC)存在下活體外 培養1-2週以容許「記憶」T細胞與「未處理」T細胞相比 得到活化。在培養期結束時,使用包括涉及肽致敏標靶之 5 1 Cr釋放、T細胞增殖或淋巴因子釋放的檢定偵測T細胞活 性。 VI.) 5 8P1D12轉殖基因動物 編碼58P1D12相關蛋白質之核酸亦可用於產生轉殖基因 142769.doc -72- 201021828 動物或「基因剔除」動物,該等動物又可用於開發及篩檢 ~療上有用的試劑。根據現有技術,可使用編碼58piDi2 之cDNA選殖編碼58P1D12之基因組DNA。接著可使用所 選殖之基因組序列產生轉殖基因動物,該等轉殖基因動物 3有表現編碼58P1D12之DNA的細胞。產生轉殖基因動物 (尤其諸如小鼠或大鼠之動物)之方法已習知於此項技術中 且例如描述於1988年4月12日頒布之美國專利第4,736,86ό 號及1989年9月26日頒布之美國專利第4,870,009號中。通 常靶向特定細胞以便58P1D12轉殖基因與組織特異性強化 子合併。 可使用包括編瑪58P1D12之轉殖基因之複本的轉殖基因 動物檢查編碼58P1D12之DNA之更強表現的效應。該等動 物可用作認為可賦予保護作用以防例如與該DNA過度表現 相關之病理性病狀之試劑的測試動物。根據本發明之此態 樣’用試劑處理動物,且與具有轉殖基因之未經處理動物 相比,病理性病狀之發生率降低表示病理性病狀之潛在性 〇 治療干預。 或者,可使用58P1D12之非人類同源物建構58P1D12 「基因剔除」動物,該動物因編碼5 8 Ρ1D12之内源基因與 引入該動物之胚細胞内的編碼58P1D12之改動基因iDNA 之間發生同源重組而具有編碼58P1D12之缺陷基因或改動 基因。舉例而言,可使用編碼58P1D12之cDNA根據現有技 術選殖編碼5 8P1D12之基因組DNA。編碼58P1D12之基因 組DNA之一部分可缺失或置換為另一種基因,諸如編碼可 142769.doc -73· 201021828 用於監測整合之可選擇標誌的基因。載體中通常包括未改 動之側接DNA之數千驗基(5’端與3’端)(有關同源重組載體 之描述,請參見例如Thomas及Capecchi, Cell, 51:503 (1987))。將載體引入胚胎幹細胞株中(例如藉由電穿孔法) 且選擇其中所引入之DNA已與内源DNA同源重組的細胞 (參見例如Li等人,Cell, 69:915 (1992))。接著將所選細胞 注入動物(例如小鼠或大鼠)之胚胞中以形成聚集嵌合體(參 見例如 Bradley, Teratocarcinomas and Embryonic StemImmunol. 159:4753, 1997). For example, in such methods, peptides in incomplete Freund's adjuvant are administered subcutaneously to HLA transgenic mice. After several weeks of immunization, splenocytes were removed and cultured in vitro for about one week in the presence of test peptides. Peptide-specific T cells are detected using a 5 1 Cr release assay involving, for example, peptide-sensitizing cells and standard stem cells expressing endogenously produced antigens. 3) Verification of recalled T cell responses from immunized individuals who have been effectively vaccinated and/or from chronically ill patients (see, eg, Rehermann, B. et al, J. Exp. Med. 181:1047, 1995; Doolan, DL et al. , Immunity 7:97, 1997; Bertoni, R. et al., J. Clin. Invest. 100:503, 1997; Threlkeld, SC et al., J. Immunol. 159:1648, 1997; Diepolder, Η. M. Man, J. Virol 71: 6011, 1997). Therefore, the recall response is detected by culturing a PBL from an individual exposed to an antigen due to a disease and thus having a "natural" immune response, or culturing a PBL from a patient who has been vaccinated against the antigen. PBL from an individual is cultured in vitro for 1-2 weeks in the presence of test peptide plus antigen presenting cells (APC) to allow activation of "memory" T cells compared to "untreated" T cells. At the end of the incubation period, T cell activity is detected using assays involving 5 1 Cr release, T cell proliferation, or lymphokine release involving peptide sensitization targets. VI.) 5 8P1D12 Transgenic Genes Nucleic acids encoding 58P1D12-related proteins can also be used to produce transgenic genes 142769.doc -72- 201021828 Animals or "gene knockout" animals, which can be used for development and screening. Useful reagents. According to the prior art, genomic DNA encoding 58P1D12 can be cloned using a cDNA encoding 58 piDi2. The transgenic animal can then be produced using the selected genomic sequence, and the transgenic animal 3 has cells expressing the DNA encoding 58P1D12. Methods of producing a transgenic animal, particularly an animal such as a mouse or a rat, are known in the art and are described, for example, in U.S. Patent Nos. 4,736,86, issued on April 12, 1988, and September 1989. U.S. Patent No. 4,870,009 issued on Jun. 26. Specific cells are typically targeted so that the 58P1D12 transgene is combined with a tissue-specific enhancer. The effect of a stronger expression of the DNA encoding 58P1D12 can be examined using a transgenic animal comprising a copy of the transgenic gene encoding Ma 58P1D12. Such animals can be used as test animals which are believed to confer protection against agents such as pathological conditions associated with excessive expression of the DNA. According to this aspect of the invention, the animals are treated with the agent and the reduced incidence of pathological conditions indicates the potential for pathological conditions compared to untreated animals having the transgenic gene. Alternatively, a 58P1D12 "knockout" animal can be constructed using a non-human homolog of 58P1D12, which is homologous between the endogenous gene encoding 5 8 Ρ 1D12 and the altered gene iDNA encoding 58P1D12 introduced into the embryonic cells of the animal. Recombinant with a defective gene or altered gene encoding 58P1D12. For example, genomic DNA encoding 58P1D12 can be cloned according to the prior art using cDNA encoding 58P1D12. One portion of the genomic DNA encoding 58P1D12 can be deleted or replaced with another gene, such as the gene encoding 142769.doc-73. 201021828 for monitoring the selectable marker of integration. The vector typically includes the thousands of assays (5' and 3' ends) of the unmodified flanking DNA (for a description of homologous recombination vectors, see, for example, Thomas and Capecchi, Cell, 51:503 (1987)). The vector is introduced into an embryonic stem cell line (e.g., by electroporation) and a cell in which the introduced DNA has been homologously recombined with the endogenous DNA is selected (see, for example, Li et al., Cell, 69:915 (1992)). The selected cells are then injected into the germ cells of an animal (e.g., mouse or rat) to form aggregate chimeras (see, for example, Bradley, Teratocarcinomas and Embryonic Stem).
Cells: A Practical Approach,E. J. Robertson 編(IRL,Cells: A Practical Approach, edited by E. J. Robertson (IRL,
Oxford,1987),第113-152頁)。接著可將嵌合胚植入適當 的假孕雌性哺育動物内,且使胚及時形成「基因剔除」動 物。生殖細胞中含有同源重組之DNA的後代可藉由標準技 術鑑別且可用於繁殖動物,其中動物之全部細胞均含有同 源重組之DNA。基因剔除動物的特徵可在於例如其因缺乏 58P1D12多狀而導致能夠抵紫某些病理性病狀或發展病理 性病狀。 VII.)偵測58P1D12之方法 本發明之另一態樣係關於彳貞測58P1D12聚核苦酸及 58P1D12相關蛋白質之方法以及鑑別58P1D12表現細胞的 方法。58P1D12之表現分布使得其成為已轉移疾病之診斷 性標誌。因此’ 58P1D12基因產物之狀態提供適用於預測 多種因素之S訊’包括晚期疾病易感性、發展速率及/或 腫瘤侵害性。如本文中所詳述,患者樣本中之581>1〇12基 因產物之狀態可藉由此項技術中熟知的多種方案分析,包 142769.doc •74· 201021828 括免疫組織化學分析、多種北方墨點技術(包括原位雜 父)、RT-PCR分析(例如針對雷射俘獲微切樣本)、西方墨 點分析及組織陣列分析β 更特疋而δ,本發明提供偵測生物樣本(諸如血清、 骨、卵巢及其他組織、尿、精液、細胞製劑及其類似物) 中之58P1D12聚核苷酸的檢定。可偵測的58piD12聚核苷 酸包括例如58P1D12基因或其片段、58ρ1〇ΐ2 mRNA、替 代性剪接變異體58Plm2 mRNA及含有58P1D12聚核苷酸 之重組DNA或RNA分子。擴增58P1D12聚核苷酸及/或偵測 5 8P1D12聚核苷酸是否存在之多種方法已於此項技術中熟 知且可在本發明之此態樣之實施中使用。 在一貫施例中’偵測生物樣本中之58P1D12 mRNA的方 法包含:使用至少一個引子藉由逆轉錄法自樣本製備 cDNA ’使用58P1D12聚核苷酸作為擴增其中之58ρ1〇ΐ2 cDNA的有義及反義引子來擴增由此製備之cDNA ;及偵測 φ 經擴增之58P1D12 cDNA是否存在。視需要可測定經擴增 之58P1D12cDNA之序列。 在另一貫施例中,偵測生物樣本中之58P1D12基因的方 法包含.首先自樣本中分離基因組DNA;使用58P1D12聚 核普酸作為有義及反義引子擴增經分離之基因組Dna ;及 偵測經擴增之58P1D12基因是否存在。可由5 8P1D12核苷 酸序列設計許多適當的有義及反義探針組合(參見例如圖i) 並用於此目的。 本發明亦提供偵測組織或其他生物樣本(諸如血清、精 M2769.doc • 75· 201021828 液、骨、卵巢、尿、細胞製劑及其類似物)中是否存在 5 8卩1012蛋白質的檢定。偵測581>1]〇12相關蛋白質之方法 亦已熟知且包括例如免疫沈澱法、免疫組織化學分析、西 方墨點分析、分子結合檢定、ELISA、ELIFA及其類似方 法。舉例而言’偵測生物樣本令是否存在58piD12相關蛋 白質之方法包含:首先使樣本與58ρ1Ε)12抗體、其 58P1D12反應性片段或含有58P1D12抗體之抗原結合區的 重組蛋白質接觸;及接著偵測樣本中之581>11)12相關蛋白 質之結合。 鑑別58P1D12表現細胞的方法亦屬於本發明之範疇内。 在一實施例中,鑑別表現58P1D12基因之細胞的檢定包含 偵測該細胞中是否存在58P1D12 mRNA。偵測細胞中之特 疋mRNA的方法已熟知且包括例如使用互補dna探針之雜 交檢定(諸如使用經標記之58P1D12核酸探針(riboprobe)的 原位雜交、北方墨點及相關技術)及多種核酸擴增檢定(諸 如使用對58P1D12特異之互補引子的RT-PCR,及其他擴增 型偵測方法,諸如分支DNA、SISBA、TMA及其類似方 法)。或者,鑑別表現5 8P1D12基因之細胞的檢定包含偵測 細胞中是否存在58P1D12相關蛋白質或是否存在細胞所分 泌之58P1D12相關蛋白質。偵測蛋白質之多種方法已於此 項技術中熟知且用於偵測58P1D12相關蛋白質及表現 58P1D12相關蛋白質之細胞。 58P1D12表現分析亦可用作鑑別及評估調節58P1D12基 因表現之藥劑的工具。舉例而言,58P1D12表現在卵巢癌 142769.doc -76· 201021828 中受到明顯上調,且在表i中所列之組織之癌症中受到表 現。抑制58P1D12於癌細胞中表現或過度表現之分子或生 物藥劑之鏗別具有治療價值。舉例而言,可藉由使用經由 RT-PCR、核酸雜交或抗體結合量化58P1di2表現的篩檢法 鑑別該藥劑。 VIII.)監測58P1D12相關基因及其產物之狀態之方法 已知腫瘤形成為多步驟過程,其中細胞生長逐漸失調且 細胞由正常生理狀態發展為癌變前狀態且接著發展為癌變 ® 狀態(參見例如 Alers 等人,Lab Invest. 77(5): 437-438 (1997)及 Isaacs 等人,Cancer Surv. 23: 19-32 (1995))。在 此背景下’檢查生物樣本之細胞生長失調之證據(諸如癌 症中之異常58P1D12表現)可容許在病理狀態(諸如癌症已 發展至治療選擇方案較有限及/或預後較壞的階段)之前及 早偵測到該異常生理狀態。在該等檢查中,例如可將所需 之生物樣本中之58P1D12的狀態與對應正常樣本(例如彼個 體或者另一個體之未受病變影響之樣本)中之58P1D12之狀 魯 態加以比較。生物樣本中之58P1D12之狀態的改變(與正常 樣本相比)提供細胞生長失調之證據。除使用未受病變影 響之生物樣本作為正常樣本外,亦可使用預定正常值,諸 如mRNA表現之預定正常量(參見例如Grever等人,j Comp. Neurol· 1996年 12月 9 曰:3 76(2): 306-14及美國專利 第5,83 7,501號),以比較樣本中之58卩1〇12狀態。 本上下文中之術語「狀態」係根據此項技術中所接受之 含義使用且係指基因及其產物之狀況或狀態。熟習此項技 142769.doc -77- 201021828 術者通常使用多種參數評估基因及其產物之狀況或狀態。 S玄專參數包括(但不限於)所表現之基因產物之位置(包括 58P1D12表現細胞之位置)以及含量,及所表現之基因產物 (諸如58P1D12 mRNA、聚核苷酸及多肽)之生物活性。 58P1D12狀態之改變通常包含58P1D12及/或58P1D12表現 細胞之位置變化及/或58P1D12 mRNA及/或蛋白質表現之 增強。 樣本中之58P1D12狀態可藉由此項技術中熟知的多種方 式分析’包括(不限於)免疫組織化學分析、原位雜交、RT_ PCR分析(針對雷射俘獲微切樣本)、西方墨點分析及組織 陣列分析。評估58P1D12基因及基因產物之狀態的典型方 案可見於例如 Ausubel等人編,1995, Current Protocols In Molecular Biology,單元2(北方墨點法)、4(南方墨點法)、 1 5(免疫印跡法)及1 8(PCR分析)。因此,生物樣本中之 5 8P1D12之狀態可藉由熟習此項技術者所使用的多種方法 評估’包括(但不限於)基因組南方分析(檢查例如58P1D12 基因中之擾動);58P1D12 mRNA之北方分析及/或PCR分析 (檢查例如58P1D12 mRNA之聚核苷酸序列或表現量之變 化)及西方分析及/或免疫組織化學分析(檢查例如多肽序列 之變化、樣本内多肽定位之變化、58P1D12蛋白質之表現 量之變化及/或58P1D12蛋白質與多肽結合搭配物之結合之 變化)。可偵測的58P1D12聚核苷酸包括例如58P1D12基因 或其片段、58P1D12 mRNA、替代性剪接變異體、 58P1D12 mRNA及含有58P1D12聚核苷酸之重組DNA或 142769.doc •78- 201021828 RNA分子。 58P1D12之表現分布使得其成為局部疾病及/或已轉移疾 病之診斷標钱,且提供有關生物樣本之生長或致癌潛在性 的資訊。特定而言,58P1D12之狀態提供適用於預測對特 定疾病階段、發展及/或腫瘤侵害性之易感性的資訊。本 發明提供測定58P1D12狀態及診斷表現58P1D12之癌症(諸 如表I中所列之組織之癌症)的方法及檢定。舉例而言,由 於58P1D12 mRNA在即巢癌及其他癌症中相對於正常即巢 ® 組織受到如此高地表現,因此可使用評估生物樣本中之 58P1D12 mRNA轉錄物或蛋白質之含量的檢定來診斷與 58P1D12失調相關的疾病,且可提供適用於確定適當治療 選擇方案之預後資訊。 58P1D12之表現狀態所提供的資訊包括發育不良細胞、 癌變前細胞及癌變細胞之存在、階段及位置;預測對疾病 各種階段之易感性;及/或測定腫瘤侵害性。此外,表現 刀布使付其可用作已轉移疾病之成像試劑。因此,本發明 w x 之一態樣係關於檢查生物樣本(諸如來自罹患或懷疑罹患 以細胞生長失調為特徵之病理(諸如癌症)之個體的彼等生 物樣本)中之58P1D12之狀態的多種分子預後及診斷方法。 如上所述’生物樣本中之58P1D12之狀態可藉由此項技 術中熟知的多種程序檢查。舉例而言,自體内特定位置所 採集之生物樣本中之58P1D12的狀態可藉由評估樣本中是 否存在或不存在58P1D12表現細胞(例如表現58piD12 mRNA或蛋白質之彼等細胞)來檢查。舉例而令,冬 142769.doc -79· 201021828 58P1D12表現細胞存在於在正常情況下不含有該等細胞之 生物樣本(諸如淋巴結)中時,此檢查可提供細胞生長失調 之證據,因為生物樣本中之58P1D 12之狀態的該等變化通 常與細胞生長失調相關。特定而言,細胞生長失調之一指 標為癌鈿胞自源器官(諸如卵巢)轉移至身體之不同區域(諸 如淋巴結)。在此背景下,細胞生長失調之證據很重要, 因為例如在相當比例的前列腺癌患者中可偵測到隱匿性淋 巴結轉移,且該等轉移與疾病發展之已知預測因子相關 (參見例如 Murphy 等人,Prostate 42(4): 3 1 5·3 17 (2000); Su 等人,Semin. Surg. Oncol. 18(1): 17-28 (2000);及 Freeman 等人,J Urol 1995 年 8 月 154(2 Pt 1):474-8)。 在一態樣中’本發明提供藉由測定由來自懷疑患有與細 胞生長失調相關之疾病(諸如增生或癌症)之個體的細胞所 表現之58P1D12基因產物之狀態且接著將如此所測定之狀 態與對應正常樣本中之58P1D12基因產物之狀態進行比較 來監測58P1D12基因產物的方法。測試樣本中相對於正常 樣本中存在異常58P1D12基因產物表明個體細胞内存在細 胞生長失調。 在另一態樣中,本發明提供適用於測定個體中是否存在 癌症之檢定’該等檢定包含偵測測誠鈿眙忐如处β .Oxford, 1987), pp. 113-152). The chimeric embryos can then be implanted into appropriate pseudopregnant female nurturing animals and the embryos formed a "gene knocking" animal in time. Progeny of homologously recombined DNA in germ cells can be identified by standard techniques and can be used to propagate animals, wherein all cells of the animal contain homologously recombined DNA. A knockout animal can be characterized, for example, by its lack of 58P1D12 polymorphism, which is capable of resisting certain pathological conditions or developing pathological conditions. VII.) Method for detecting 58P1D12 Another aspect of the present invention relates to a method for detecting 58P1D12 polynucleic acid and 58P1D12-related protein and a method for identifying 58P1D12 expressing cells. The distribution of the performance of 58P1D12 makes it a diagnostic marker for metastatic disease. Thus, the state of the '58P1D12 gene product provides an S-sense that is suitable for predicting a variety of factors, including advanced disease susceptibility, rate of progression, and/or tumor invasiveness. As detailed herein, the status of the 581>1〇12 gene product in a patient sample can be analyzed by a variety of protocols well known in the art, including 142769.doc • 74· 201021828 including immunohistochemical analysis, various northern inks. Point technology (including in-situ miscellaneous), RT-PCR analysis (eg, for laser capture micro-cut samples), Western blot analysis, and tissue array analysis β are more specific and δ, the present invention provides detection of biological samples (such as serum Characterization of the 58P1D12 polynucleotide in bone, ovary and other tissues, urine, semen, cell preparations and the like. The detectable 58 piD12 polynucleotide includes, for example, the 58P1D12 gene or a fragment thereof, 58ρ1〇ΐ2 mRNA, an alternative splice variant 58Plm2 mRNA, and a recombinant DNA or RNA molecule comprising a 58P1D12 polynucleotide. A variety of methods for amplifying the 58P1D12 polynucleotide and/or detecting the presence of the 5<8>P1D12 polynucleotide are well known in the art and can be used in the practice of this aspect of the invention. In a consistent example, the method of detecting 58P1D12 mRNA in a biological sample comprises: preparing cDNA from a sample by reverse transcription using at least one primer. Using 58P1D12 polynucleotide as a sense of amplification of the 58ρ1〇ΐ2 cDNA therein And an antisense primer to amplify the cDNA prepared thereby; and detecting the presence or absence of φ amplified 58P1D12 cDNA. The sequence of the amplified 58P1D12 cDNA can be determined as needed. In another embodiment, the method for detecting the 58P1D12 gene in a biological sample comprises: firstly isolating genomic DNA from the sample; using 58P1D12 polynucleotide as a sense and antisense primer to amplify the isolated genomic DNA; The presence or absence of the amplified 58P1D12 gene was measured. Many suitable combinations of sense and antisense probes can be designed from the 5<8>P1D12 nucleotide sequence (see, e.g., Figure i) and used for this purpose. The invention also provides assays for detecting the presence of 5 8 卩 1012 protein in tissue or other biological samples such as serum, serum, bone, ovary, urine, cell preparations and the like. Methods for detecting 581 > 1] 〇 12 related proteins are also well known and include, for example, immunoprecipitation, immunohistochemical analysis, Western blot analysis, molecular binding assays, ELISA, ELIFA, and the like. For example, a method of detecting a biological sample for the presence of a 58 piD12-related protein comprises first contacting a sample with a 58p1Ε12 antibody, a 58P1D12 reactive fragment thereof, or a recombinant protein comprising an antigen binding region of a 58P1D12 antibody; and then detecting the sample 581 > 11) The binding of 12 related proteins. Methods for identifying 58P1D12 expressing cells are also within the scope of the invention. In one embodiment, the assay to identify cells expressing the 58P1D12 gene comprises detecting the presence of 58P1D12 mRNA in the cell. Methods for detecting specific mRNA in cells are well known and include, for example, hybridization assays using complementary dna probes (such as in situ hybridization using labeled 58P1D12 nucleic acid probes (riboprobe), northern blots and related techniques) and various Nucleic acid amplification assays (such as RT-PCR using complementary primers specific for 58P1D12, and other amplification-type detection methods such as branched DNA, SISBA, TMA, and the like). Alternatively, the assay to identify cells expressing the 5 8P1D12 gene comprises detecting the presence or absence of a 58P1D12 associated protein in the cell or the presence or absence of a 58P1D12 associated protein secreted by the cell. A variety of methods for detecting proteins are well known in the art and are useful for detecting 58P1D12 related proteins and cells expressing 58P1D12 related proteins. The 58P1D12 performance analysis can also be used as a tool to identify and evaluate agents that modulate the performance of the 58P1D12 gene. For example, 58P1D12 is shown to be significantly up-regulated in ovarian cancer 142769.doc-76·201021828 and is shown in cancers of the tissues listed in Table i. Screening of molecules or biologic agents that inhibit the expression or overexpression of 58P1D12 in cancer cells is of therapeutic value. For example, the agent can be identified by screening using 58P1di2 expression by RT-PCR, nucleic acid hybridization or antibody binding. VIII.) Methods for Monitoring the Status of 58P1D12 Related Genes and Their Products It is known that tumor formation is a multi-step process in which cell growth is gradually dysregulated and cells develop from a normal physiological state to a precancerous state and then develop into a Carcinogenesis® state (see, for example, Alers Et al., Lab Invest. 77(5): 437-438 (1997) and Isaacs et al., Cancer Surv. 23: 19-32 (1995)). In this context 'inspecting evidence of cell growth disorders in biological samples (such as abnormal 58P1D12 expression in cancer) may allow early in the pathological state (such as when cancer has progressed to a stage where treatment options are more limited and/or the prognosis is worse) The abnormal physiological state was detected. In such examinations, for example, the state of 58P1D12 in the desired biological sample can be compared to the state of 58P1D12 in the corresponding normal sample (e.g., a sample of the other body or another body that is not affected by the lesion). A change in the state of 58P1D12 in a biological sample (compared to a normal sample) provides evidence of a disorder in cell growth. In addition to using a biological sample that is not affected by the lesion as a normal sample, a predetermined normal value, such as a predetermined normal amount of mRNA expression, can also be used (see, eg, Grover et al, j Comp. Neurol. December 9, 1996: 3 76 ( 2): 306-14 and US Patent No. 5,83 7,501) to compare the 58卩1〇12 states in the sample. The term "state" in this context is used in accordance with the meaning accepted in the art and refers to the condition or state of the gene and its products. Familiar with this technique 142769.doc -77- 201021828 The surgeon usually uses a variety of parameters to assess the status or status of genes and their products. The parameters of the S-specialization include, but are not limited to, the location of the expressed gene product (including the location of the 58P1D12-expressing cells) and the amount, and the biological activity of the expressed gene product (such as 58P1D12 mRNA, polynucleotide, and polypeptide). The change in the state of 58P1D12 typically involves a change in the position of the 58P1D12 and/or 58P1D12 expressing cells and/or an increase in the expression of 58P1D12 mRNA and/or protein. The 58P1D12 status in the sample can be analyzed by a variety of means well known in the art including, without limitation, immunohistochemical analysis, in situ hybridization, RT-PCR analysis (for laser capture micro-cut samples), Western blot analysis, and Tissue array analysis. Typical protocols for assessing the status of the 58P1D12 gene and gene product can be found, for example, in Ausubel et al., 1995, Current Protocols In Molecular Biology, Unit 2 (Northern Ink Point Method), 4 (Southern Ink Point Method), 15 (immunoblotting) ) and 1 8 (PCR analysis). Thus, the status of 58P1D12 in a biological sample can be assessed by a variety of methods used by those skilled in the art including, but not limited to, genomic Southern analysis (checking for example, perturbations in the 58P1D12 gene); Northern analysis of 58P1D12 mRNA and / or PCR analysis (check for changes in the nucleotide sequence or amount of expression of 58P1D12 mRNA) and Western analysis and / or immunohistochemical analysis (for example, changes in polypeptide sequence, changes in polypeptide localization in the sample, performance of 58P1D12 protein) A change in amount and/or a change in the binding of the 58P1D12 protein to the polypeptide binding partner). The detectable 58P1D12 polynucleotide includes, for example, the 58P1D12 gene or a fragment thereof, 58P1D12 mRNA, an alternative splice variant, 58P1D12 mRNA, and recombinant DNA containing 58P1D12 polynucleotide or 142769.doc •78-201021828 RNA molecule. The performance profile of 58P1D12 makes it a diagnostic marker for local disease and/or metastatic disease and provides information on the growth or carcinogenic potential of biological samples. In particular, the state of 58P1D12 provides information suitable for predicting susceptibility to specific disease stages, development, and/or tumor invasiveness. Methods and assays for determining the status of 58P1D12 and diagnosing cancers exhibiting 58P1D12, such as cancers listed in Table I, are provided. For example, since 58P1D12 mRNA is so highly expressed in nested cancer and other cancers relative to normal, nested tissue, a assay that assesses the amount of 58P1D12 mRNA transcript or protein in a biological sample can be used to diagnose a disorder associated with 58P1D12. The disease, and can provide prognostic information suitable for determining appropriate treatment options. The information provided by the performance status of 58P1D12 includes the presence, stage and location of dysplastic cells, precancerous cells and cancerous cells; prediction of susceptibility to various stages of the disease; and/or determination of tumor invasiveness. In addition, the performance of the knife cloth makes it an imaging agent that can be used as a metastatic disease. Thus, one aspect of the invention wx is a multi-molecular prognosis for examining the state of 58P1D12 in a biological sample, such as from a biological sample of an individual suffering from or suspected of having a pathology (such as cancer) characterized by a disorder of cell growth. And diagnostic methods. The state of 58P1D12 in the biological sample as described above can be examined by a variety of procedures well known in the art. For example, the status of 58P1D12 in a biological sample taken from a particular location in the body can be examined by assessing the presence or absence of 58P1D12 expressing cells (e.g., cells expressing 58 piD12 mRNA or protein) in the sample. For example, winter 142769.doc -79· 201021828 58P1D12 shows that cells present in biological samples (such as lymph nodes) that do not normally contain such cells, this test can provide evidence of cell growth disorders, because in biological samples These changes in the state of 58P1D 12 are often associated with dysregulation of cell growth. In particular, one of the dysregulations of cells is the transfer of cancer cells from a source organ (such as the ovary) to different regions of the body (such as lymph nodes). In this context, evidence of dysregulation of cells is important because, for example, occult lymph node metastasis can be detected in a significant proportion of prostate cancer patients, and such metastasis is associated with known predictors of disease progression (see, for example, Murphy et al. Man, Prostate 42(4): 3 1 5·3 17 (2000); Su et al., Semin. Surg. Oncol. 18(1): 17-28 (2000); and Freeman et al., J Urol 1995 8 Month 154 (2 Pt 1): 474-8). In one aspect, the invention provides a state of the 58P1D12 gene product expressed by cells from an individual suspected of having a disease associated with a disorder of cell growth, such as hyperplasia or cancer, and then the state thus determined A method of monitoring the 58P1D12 gene product in comparison to the status of the 58P1D12 gene product in the corresponding normal sample. The presence of an abnormal 58P1D12 gene product in the test sample relative to the normal sample indicates a dysregulation of cell growth in the individual cell. In another aspect, the invention provides assays suitable for determining the presence or absence of cancer in an individual' such assays comprise detecting a testosterone such as β.
(但不限於)表I中所列之彼等組織)中是否存在 可評估組織(包括 匕否存在58P1D12 mRNA。由於對應正常組織不表現5 8ρ丨D丄2 mRNA或以較 142769.doc *80- 201021828 低量表現58P1D12 mRNA,因此任何該等組織中存在 58P1D12顯著表現均可用於表明癌症之出現、存在及/或嚴 重程度。 在一相關實施例中,在蛋白質級別而非在核酸級別測定 58P1D12狀態。舉例而言,該方法包含:測定測試組織樣 本中之細胞所表現之58P1D12蛋白質的含量且將如此测定 之含量與對應正常樣本中所表現之58P1D12含量進行比 較。在一貫施例中,例如使用免疫組織化學方法評估 ® 58P1D12蛋白質之存在。能夠偵測58P1D12蛋白質表現之 58P1D12抗體或結合搭配物可以此項技術中熟知的多種檢 定型式用於此目的。 在另一實施例中,可評估生物樣本中之58P1D12核普酸 及胺基酸序列之狀態以便鑑別該等分子結構中之擾動。該 等擾動可包括插入、缺失、取代及其類似擾動。由於在與 生長失調表現型相關的大量蛋白質中觀測到核苷酸及胺基 _ 酸序列中之擾動’因此該等評估有用(參見例如Marrogi等 人,1999,J. Cutan· Pathol· 26(8):369-378)。舉例而言, 58P1D12序列之突變可表明腫瘤之存在或增強。因此該等 檢定具有診斷及預測價值,其中58P1D12中之突變表明潛 在性功能降低或腫瘤生長增強。 用於觀測核苷酸及胺基酸序列中之擾動的多種檢定已於 此項技術中熟知。舉例而言,藉由本文中所述的北方、南 方、西方、PCR及DNA定序方案觀測58P1D12基因產物之 核酸或胺基酸序列之尺寸及結構。此外,觀測核脊酸及胺 142769.doc -81 - 201021828 基酸序列中之擾動的其他方法(諸如單股構形多態性分析) 已於此項技術中熟知(參見例如1999年9月7日頒布之美國 專利第5,382,51〇號及1995年!月17日頒布之美國專利第 5,952,170號)。 此外,可檢查生物樣本中之581>1]〇12基因之曱基化狀 態。基因5,調控區中之CpG島之異常去曱基化及/或超曱基 化經常發生於永生化細胞及經轉型細胞中,且會引起多種 基因之表現改變。舉例而言,π類麩胱甘肽s_轉移酶(表現 於正常前列腺中、但不表現於>9〇%之前列腺癌中的蛋白〇 質)之啟動子超曱基化似乎使此基因之轉錄永久沉默,且 為前列腺癌中最常偵測到的基因組變化(De Marzo等人,(but not limited to) the presence or absence of evaluable tissue in any of the tissues listed in Table I (including the presence or absence of 58P1D12 mRNA. Since the corresponding normal tissue does not exhibit 5 8ρ丨D丄2 mRNA or 142769.doc *80 - 201021828 Low amounts of 58P1D12 mRNA, so the presence of 58P1D12 in any of these tissues can be used to indicate the presence, presence and/or severity of cancer. In a related embodiment, 58P1D12 is determined at the protein level rather than at the nucleic acid level. For example, the method comprises: determining the amount of 58P1D12 protein expressed by the cells in the test tissue sample and comparing the content thus determined to the 58P1D12 content expressed in the corresponding normal sample. In a consistent example, for example The presence of the <58P1D12 protein is assessed using immunohistochemical methods. The 58P1D12 antibody or binding partner capable of detecting the 58P1D12 protein expression can be used for this purpose in a variety of assay formats well known in the art. In another embodiment, the evaluable organism The state of the 58P1D12 nucleotide and amino acid sequences in the sample to identify the molecular structure Perturbations. These perturbations may include insertions, deletions, substitutions, and the like. Such evaluations are useful because of the observed perturbations in nucleotide and amino acid sequences in a large number of proteins associated with growth dysfunction phenotypes ( See, for example, Marrogi et al, 1999, J. Cutan Pathol 26(8): 369-378. For example, a mutation in the 58P1D12 sequence may indicate the presence or enhancement of a tumor. Therefore, such assays have diagnostic and predictive value, Mutations in 58P1D12 indicate decreased potential function or enhanced tumor growth. A variety of assays for observing perturbations in nucleotide and amino acid sequences are well known in the art. For example, by the description herein Northern, Southern, Western, PCR, and DNA sequencing programs to observe the size and structure of the nucleic acid or amino acid sequence of the 58P1D12 gene product. In addition, observe the perturbations in the nucleotide sequence of nucleocapnic acid and amine 142769.doc -81 - 201021828 Other methods, such as single-strand configuration polymorphism analysis, are well known in the art (see, for example, U.S. Patent No. 5,382,51, issued on September 7, 1999, and 1995! U.S. Patent No. 5,952,170 issued on the 17th. In addition, the thiolation state of the 581>1]〇12 gene in the biological sample can be examined. Gene 5, the abnormal demethylation of the CpG island in the regulatory region and / or hyperthiolation often occurs in immortalized cells and transformed cells, and can cause changes in the expression of a variety of genes. For example, π-type glutathione s_transferase (expressed in the normal prostate, but not The hyperpurification of the promoter of the protein enamel expressed in >9% prostate cancer appears to permanently silence the transcription of this gene and is the most frequently detected genomic alteration in prostate cancer (De Marzo et al. ,
Am. J. Pathol. 155 (6):1985-1992 (1999))。此外,至少 70〇/〇 之高級前列腺上皮内瘤形成(PIN)病例中存在此變化 (Brooks專人,Cancer Epidemiol, Biomarkers Prev·, 1998, 7: 531-536)。在另一實例中’ LAGE-I腫瘤特異性基因(其 不表現於正常前列腺中’但表現於25_5〇%之前列腺癌中) 之表現由類淋巴母細胞中之去氧氮雜胞苷誘導,說明腫瘤❿ 表現起因於去甲基化(Lethe等人,1此1(:&11<^76(6).· 903-908 (1998))。檢查基因之甲基化狀態的多種檢定已於 此項技術中熟知。舉例而言,可在南方雜交方法中使用不 能分裂含有曱基化CpG位點之序列的甲基化敏感性限制酶 以評估CpG島之甲基化狀態。此外,MSP(甲基化特異性 PCR)可快速測定給定基因之CpG島中所存在之所有CpG位 點的曱基化狀態。此程序包括初始用亞硫酸氫鈉(其使所 142769.doc -82- 201021828 有未甲基化胞嘧啶轉化為尿嘧啶)修飾DNA,接著使用對 甲基化DNA相對於未甲基化〇1^八特異之引子進行擴增。包 括甲基化干擾之方案亦可見於例如Current pr〇t〇e〇is ιη Molecular Biology,單元 12, Frederick M Ausubel 等人 編,1995 。 基因擴增為用於評估58P1D12狀態之另一種方法。使用 經適當標記之探針,基於本文中所提供之序列,直接(例 如)藉由量化mRNA之轉錄的習知南方墨點法或北方墨點法 ❿(Thomas, 1980,Pr〇c. Natl. Acad Sci USA,77:52〇1 5205)、點潰墨法(DNA分析)或原位雜交法於樣本中量測基 因擴增。或者,使用識別特異性雙鏈體之抗體,該等特異 性雙鏈體包括DNA雙鏈體、RNA雙鏈體及〇>^ RNA雜交Am. J. Pathol. 155 (6): 1985-1992 (1999)). In addition, this change is present in advanced prostate intraepithelial neoplasia (PIN) cases of at least 70 〇/〇 (Brooks, Cancer Epidemiol, Biomarkers Prev., 1998, 7: 531-536). In another example, the expression of the 'LAGE-I tumor-specific gene (which is not expressed in the normal prostate but expressed in 25_5% of prostate cancer) is induced by deoxyazacytidine in lymphoblastoid cells, This indicates that the tumor ❿ performance is due to demethylation (Lethe et al., 1 this: (&&;11<^76(6).. 903-908 (1998)). Various tests for examining the methylation status of genes have been It is well known in the art. For example, a methylation-sensitive restriction enzyme that does not cleave a sequence containing a thiolated CpG site can be used in a Southern hybridization method to assess the methylation status of a CpG island. (Methylation-specific PCR) allows rapid determination of the thiolation status of all CpG sites present in a CpG island of a given gene. This procedure involves the initial use of sodium bisulfite (which gives 142769.doc-82- 201021828 There is unmethylated cytosine converted to uracil) modified DNA, followed by amplification of methylated DNA relative to unmethylated 〇1 VIII specific primers, including methylation interference can also be found in For example, Current pr〇t〇e〇is ιη Molecular Biology, Unit 12, Freder Ig M Ausubel et al., ed. 1995. Gene amplification is another method for assessing the status of 58P1D12. Using appropriately labeled probes, based on the sequences provided herein, directly, for example, by quantifying the transcription of mRNA Conventional Southern Ink Point Method or Northern Ink Point Method (Thomas, 1980, Pr〇c. Natl. Acad Sci USA, 77:52〇1 5205), point-solving method (DNA analysis) or in situ hybridization method Medium-quantity amplification of genes. Alternatively, antibodies that recognize specific duplexes, including DNA duplexes, RNA duplexes, and 〇>^ RNA hybrids, are used.
雙鏈體或DNA蛋白質雙鏈體。轉而將抗體標記且執行檢 疋,其中雙鏈體結合至表面,以使得雙鏈體形成於表面上 之後’可偵測到與雙鏈體結合之抗體之存在。 φ 可使用例如偵測58plD12表現之北方、點墨點或RT_pCR 分析法方便地檢定活檢组織或周圍血液中是否存在癌細 胞。存在RT-PCR可擴增之58P1D12 mRNA表明存在癌症。 RT-PCR檢定已於此項技術中熟知。目前評估針對周圍血 液中之腫瘤細胞的RT_PCR偵測檢定以供診斷及控制多種 人類實體腫瘤使用。 本發明之另一態樣為評估個體對於發展癌症之易感性。 在只施例中,預測癌症易感性之方法包含偵測組織樣本 中之58P1D12 mRNA或58P1D12蛋白質,其存在表明癌症 142769.doc •83· 201021828 易感性’其中58P1D12 mRNA表現程度與易感程度相關。 在一特定實施例中,檢查卵巢或其他組織中是否存在 58P1D12,其中該樣本中存在58plDi2表明卵巢癌易感性 (或卵巢腫瘤之出現或存在)。類似地,可評估生物樣本中 之5 8P 1D12核苷酸及胺基酸序列之完整性,以便鑑別該等 分子結構中之擾動,諸如插入、缺失、取代及其類似擾 動。該樣本中之5 8P1D12基因產物中存在一或多種擾動表 明癌症易感性(或腫瘤之出現或存在)。 本發明亦包含測定腫瘤侵害性之方法。在一實施例中,❹ 測定腫瘤侵害性之方法包含:測定腫瘤細胞所表現之 58P1D12 mRNA或58P1D12蛋白質之含量;將如此所測定 之含量與表現於對應正常組織中之58piD12 mRNA或 58P1D12·蛋白質之含量進行比較,該正常組織取自同一個 體或正常組織參考樣本,其十腫瘤樣本相對於正常樣本中 之58P1D12 mRNA或58ΡΠΜ2蛋白質表現程度表明侵害性 程度。在一特定實施例中,藉由測定58piD12在腫瘤細胞 中所表現之程度來評估腫瘤侵害性,表現量愈高表明腫瘤〇 侵害性愈大。另一實施例為評估生物樣本中之58piDi2核 普酸及胺基酸序列之完整性,以便鑑別該等分子結構中之 擾動’諸如插入、缺失、取代及其類似擾動。存在一或多 種擾動表明腫瘤侵害性更大。 本發明之另-實施例係關於觀測個體之惡性疾病隨時間 發展的方法。在-實施例中,觀測個體之惡性疾病隨時間 發展的方法包含:測定腫瘤樣本中由細胞所表現之 142769.doc •84. 201021828 58P1D12 mRNA或581>1〇12蛋白質之含量;將如此所測定 之含量與在不同時間取自同一個體之相當組織樣本中所表 現之58P1D12 mRNA或58P1D12蛋白質的含量進行比較, 其中腫瘤樣本中之58P1D12 mRNA或58P1D12蛋白質隨時 間表現之程度提供有關癌症發展之資訊。在一特定實施例 中,藉由測定腫瘤細胞中之58P1D12隨時間之表現來評估 癌症發展’其中表現隨時間增強表明癌症發展。此外,可 評估生物樣本中之5 8P1D12核苷酸及胺基酸序列之完整 ® 性,以便鑑別該等分子結構中之擾動,諸如插入、缺失、 取代及其類似擾動,其中存在一或多種擾動表明癌症發 展。 以上診斷方法可與此項技術中已知之多種預後及診斷方 案中之任一種組合。舉例而言,本發明之另一實施例係關 於觀測58P1D12基因及58P1D12基因產物之表現(或 58P1D12基因及58P1D12基因產物中之擾動)與惡性疾病相 _ 關因素之間是否相符的方法,作為診斷及預測組織樣本之 狀態的方式。可利用與惡性疾病相關的多種因素,諸如與 惡性疾病相關之基因之表現以及大體細胞學觀測(參見例 如 Bocking等人,1984,Anal. Quant. Cytol. 6(2):74-88 ; Epstein,1995,Hum. Pathol. 26(2):223-9 ; Thorson等人, 1998, Mod. Pathol. 11(6):543-51 ; Baisden等人,1999, Am. J· Surg· Pathol· 23(8):918-24)。舉例而言,可使用用於觀 測58P1D12基因及58P1D12基因產物之表現(或58p1D12基 因及58P1D12基因產物中之擾動)與另一惡性疾病相關因素 142769.doc -85- 201021828 之間是否相符的方法,因為存在一組與疾病相符之特定因 素可提供用於診斷及湏測組織樣本之狀態的關鍵資訊。 本文中描述用於偵測及量化58p i D丨2 mRNA或蛋白質之 表現的方法,且標準的核酸及蛋白質偵測及量化技術已於 此項技術中熟知。偵測及量化58P1D12 mRNA之標準方法 包括.使用經標記之58ρ1Ε>12核酸探針的原位雜交法;使 用58P1D12聚核苷酸探針的北方墨點法及相關技術;使用 對58P1D12特異之引十的RT_PCR*析法;及其他擴增型偵 測方法,諸如分支DN A、SISBA、TMA及其類似方法。存 一特定實施例中,使用半定量RT_PCR偵測並量化58piD12 mRNA表現。能夠擴增58P1D12之許多引子可用於此目 的’包括(但不限於)私文中具體描述之多組引子。在一特 定實施例中,可與野生型58P1D12蛋白質特異性反應之多 株或單株抗體可用於涪檢組織之免疫組織化學檢定中。 IX.)鑑別與58P1D12梱互作用之分子 本文中所揭示之58P1D12蛋白質及核酸序列容許熟習此 項技術者鑑別與58P1D12相互作用之蛋白質、小分子及其 他藥劑,以及由58PID 12經由此項技術中所接受之多種方 案中之任一種活化的途徑。舉例而言,可使用所謂的相互 作用截留糸統之一(亦稱為「雙雜交檢定」)。在該等系統 中’分子相互作用且重組指導報導基因表現之轉錄因子, 藉此檢定報導基因之表現。其他系統經由重建真核轉錄活 化因子來鑑別活體内蛋白質-蛋白質相互作用,參見例如 1999年9月21日頒布之美國專利第5,955,28〇號;1999年7月 142769.doc -86 - 201021828 20曰頒布之美國專利第5,925,523號;1998年12月8日頒布 之美國專利第5,846,722號;及1999年12月21日頒布之美國 專利第6,〇〇4,746號。亦可利用此項技術中基於基因組預測 蛋白質功能的算法(參見例如Marcotte等人,Nature 402: 1999年 11月 4 日,83-86)。 或者’可篩檢肽文庫以鑑別與58P1D12蛋白質序列相互 作用之分子。在該等方法中,藉由篩檢編碼一組隨機胺基 酸或受控胺基酸的文庫來鑑別結合58plDi2之肽。將藉由 文庫所編碼的肽作為噬菌體外被蛋白之融合蛋白質表現, 接著針對58P1D12蛋白質篩檢噬菌體顆粒。 因此’具有多種用途(諸如治療劑、預後劑或診斷劑)的 狀從而在無有關所預期之配體或受體分子之結構的任何先 刚資訊下得到鑑別。可用於鑑別與5 8P1D12蛋白質序列相 互作用之分子的典型肽文庫及篩檢方法例如揭示於丨998年 3月3日頒布之美國專利第5,723,286號及1998年3月31日頒 布之美國專利第5,733,731號中。 醫 或者,使用表現58P1D12之細胞株鑑別由58P1D12介導 之蛋白質-蛋白質相互作用。可使用免疫沈澱技術檢查該 等相互作用(參見例如Hamilton B.J·等人Biochem. Biophys. Res. Commun. 1999,261:646-51)。可使用抗 58P1D12 抗體 使58P1D12蛋白質自58P1D12表現細胞株中免疫沈澱。或 者’可將針對His-標記之抗體用於經工程改造以表現 58P1D12與His-標記之融合體(上述載體)的細胞株中。可藉 由諸如西方墨點法、蛋白質之35s_甲硫胺酸標記法、蛋白 142769.doc •87- 201021828 質顯微定序法、銀染色法及二維氣膠電泳法的程序檢查免 疫沈殿複合物之蛋白質結合。 可經由該等篩檢檢定之相關實抱例鑑別與58p丨D12相互 作用的小分子及配體。舉例而言,可鑑別干擾蛋白質功能 之小分子,包括干擾58P1D12介導磷酸化及去磷酸化、與 DNA或RNA分子之相互作用(此為細胞週期調控之指標)、 第二信使信號轉導或腫瘤形成之能力的分子。類似地,鑑 別調節58P1D12相關離子通道、蛋白質泵或細胞通信功能 之小分子並用於治療患有表現58PLD12之癌症的患者(參見© 例如 Hille,B” Ionic Channels of Excitable Membranes第 2 版,Sinauer Assoc·,Sunderland,MA,1992)。此外,調控 58P1D12功能的配體可基於其結合58piD12並活化報導構 築體的能力得到鑑別。典型方法論述於例如丨999年7月27 曰頒布之美國專利第5,928,868號中,且包括用於形成雜交 配體之方法,其中至少一個配體為小分子。在說明性實施 例中’使用經工程改造以表現58P1D12融合蛋白及DNA結 合蛋白的細胞將雜交配體/小分子與cDNA文庫轉錄活化蛋® 白之融合蛋白共表現。細胞進一伊含有報導基因,其表現 在第一融合蛋白與第二融合蛋白從此接近時受到調節,此 事件僅在雜交配體結合至兩雜交養白之標靶位點時才發 生。選擇表現報導基因之彼等細脱並鑑別未知小分子或未 知配體。此方法提供鑑別可活化戋抑制58p丨D丨2之調節劑 的方法。 本發明之一實施例包含篩檢與围1中所示之58ρι〇12胺 142769.doc -88- 201021828 基酸序列相互作用之分子的方法該方法包含以下步驟: 使刀子群與58P1D12胺基酸序列接觸;在有助於相互作用 的條件下使分子群與581>11)12胺基酸序列相互作用;測定 疋否存在與58P1D12胺基酸序列相互作用之分子;及接著 將不與58P1D12胺基酸序列相互作用之分子和與58piD12 胺基S欠序列相互作用之分子分離。在一特定實施例中,該 方法進一步包含純化、表徵及鑑別與58P1D12胺基酸序列 ^ 相互作用之分子。經鑑別之分子可用於調節5 8P1D12所執 行之功能。在一較佳實施例中,使58piE)12胺基酸序列與 肽文庫接觸。 x.)治療方法及組合物 鑑別作為在一組有限組織中正常表現、但亦在癌症(諸 如表I中所列之彼等癌症)中表現之蛋白質的58P1D12為治 療該等癌症揭開多種治療方法。 值得注意的是,靶向抗腫瘤療法為有用的,即使當靶向 Q 蛋白質在正常組織、甚至正常生命器官組織中受到表現 時。生命器官為維持生命所必需的器官,諸如心臟或結 腸。非生命器官為在移除之後個體仍能存活的器官。非生 命器官之實例為卵巢、乳房及前列腺。 舉例而吕’赫赛汀(Herceptin®)為經FDA批准之藥物, 其由與刀別稱為HER2、HER2/neu及erb-b-2之蛋白質且有 免疫反應性的抗體組成。赫赛汀由Genentech銷售且在商 業上為成功的抗腫瘤藥劑。赫赛汀在2002年的銷售額達到 近四億美元。赫赛汀可治療HER2陽性轉移性乳癌。然 142769.doc •89· 201021828 而,HER2之表現不限於該等腫瘤。該蛋白質亦在多種正 常組織中受到表現。特定而言,已知HER2/neu存在於正常 腎及心臟中,因此赫赛汀之所有人類接受者中均存在該等 組織。Latif,Z.等人,B.J.U. International (200 2) 89: 5-9 亦 證明HER2/neu存在於正常腎中。如該論文中所證明(其評 估腎細胞癌是否為抗HER2抗體(諸如赫賽汀)之較佳適應 症),蛋白質與mRNA均形成於良性腎組織中。值得注意的 是,HER2/neu蛋白質在良性腎組織中強烈地過度表現。 儘管HER2/neu在諸如心臟及腎之生命組織中受到表現, 但赫賽汀為一種經FDA批准且在商業上成功的非常有用藥 物。赫賽汀對心臟組織之影響(亦即「心臟中毒」)僅為治 療副作用。當用單獨赫赛汀治療患者時,極低百分比的患 者中發生明顯心臟中毒。為將心臟中毒減至最小,對用 HER2/neu治療存在更嚴格的准入要求。在可進行治療之 前,評估諸如心臟病狀誘因之因素。 特別注意的是,雖然指出腎組織呈現正常表現、甚至可 能比心臟組織更高的表現,但腎沒有任何可覺察的赫賽汀 副作用。此外,在表現HER2之多類正常組織中,亦很少 發生任何副作用。僅心臟組織顯現任何可覺察的副作用。 HER2/neu表現特別顯著之組織(諸如腎)尚未成為任何副作 用之基礎。 此外,已發現靶向表皮生長因子受體(EGFR)之抗腫瘤療 法愛必妥(Erbitux)(ImClone)的有利治療作用。EGFR亦在 多種正常組織中受到表現。在使用抗EGFR治療劑之後, 142769.doc -90· 201021828 正常組,織中存在極其有限的副作。用egfr治療時所發 生的一般副作用為嚴重皮療,其在1〇〇%經歷治 中被觀測到。 因此’標靶蛋白質在正常組織、甚至正常生命組織中之 表現不敵蛋白質之!^向藥劑料其中蛋白質亦過度表現之 某些腫瘤之治療劑的效用。舉例而言,在生命器官中之表 現本身並不有害。此外,視為可以免除的器官(諸如前洌 腺及卵巢)可加以移除而不影響壽命。最後,有些生命蒸 官因免疫特權而不受正常器官表現之影響。免疫特權器卞 為受血液-器官障壁保護而與血液隔離之器官且因此免疲 療法無法到達。免疫特權器官之實例為腦及睪丸。 因此,抑制58P1D12蛋白質之活性的治療方法適用於罹 患表現58PUM2之癌症的患者。該等治療方法通常分為三 類。第一類方法調節與腫瘤細胞生長有關之58piD12^ 能,從而抑制或延緩腫瘤細胞生長或誘導殺死腫瘤細胞。 φ 第二類方法包含用於抑制58P1D12蛋白質與其結合搭配物 或與其他蛋白質之結合或缔合的多種方法。第三類方法岜 含用於抑制58P1D12基因之轉錄或58P1D12 mRNA之轉譯 的多種方法。 X. A.)抗癌疫苗 本發明提供包含58P1D12相關蛋白質或58P1D12相關核 酸之癌症疫苗。考慮到58P1D12表現,癌症疫苗預防及/咸 治療表現58P1D12之癌症’對非標靶組織的影響最小或無 影響。在疫苗中使用產生細胞介導體液免疫反應之腫瘤技 142769.doc -91- 201021828 原作為抗癌療法已於此項技術中熟知,且已在使用九類 PSMA及齧齒動物PAP免疫原之情況下用於前列腺癌中* (Hodge 等人 ’ 1995, Int. J. Cancer 63:231-237 ; Fong 等 人,1997, J. Immunol. 159: 3113-3117)。 該等方法可藉由使用58P1D12相關蛋白質或编碼 58P1D12之核酸分子及能夠表現並呈現58P1D12免疫原(其 通常包含多種T細胞抗原決定基或抗體)之重組載體而容易 地實施。熟習此項技術者應瞭解,用於傳遞免疫反應性抗 原決定基之多種疫苗系統於此項技術中已知(參見例如 ©A duplex or DNA protein duplex. The antibody is then labeled and assayed, wherein the duplex is bound to the surface such that the duplex is formed on the surface after the presence of an antibody that binds to the duplex is detected. φ can be conveniently used to detect the presence of cancer cells in the biopsy tissue or surrounding blood using, for example, detecting the north of the 58plD12 expression, dot blot, or RT_pCR analysis. The presence of RT-PCR amplifiable 58P1D12 mRNA indicates the presence of cancer. RT-PCR assays are well known in the art. RT_PCR detection assays for tumor cells in peripheral blood are currently evaluated for the diagnosis and control of a variety of human solid tumors. Another aspect of the invention is to assess an individual's susceptibility to developing cancer. In only one example, a method for predicting cancer susceptibility comprises detecting 58P1D12 mRNA or 58P1D12 protein in a tissue sample, the presence of which indicates cancer 142769.doc • 83· 201021828 Susceptibility' wherein the degree of 58P1D12 mRNA expression correlates with the degree of susceptibility. In a specific embodiment, the presence of 58P1D12 in the ovary or other tissue is examined, wherein the presence of 58 pl Di2 in the sample indicates susceptibility to ovarian cancer (or the presence or presence of an ovarian tumor). Similarly, the integrity of the 5<8>P1D12 nucleotide and amino acid sequences in a biological sample can be assessed to identify perturbations in such molecular structures, such as insertions, deletions, substitutions, and the like. One or more perturbations in the 58P1D12 gene product in the sample indicate cancer susceptibility (or the presence or presence of a tumor). The invention also encompasses methods of determining tumor invasiveness. In one embodiment, the method for determining tumor invasiveness comprises: determining the content of 58P1D12 mRNA or 58P1D12 protein expressed by the tumor cells; and determining the content as determined by 58piD12 mRNA or 58P1D12· protein in the corresponding normal tissue. The content was compared. The normal tissue was taken from the same individual or normal tissue reference sample, and the degree of performance of the ten tumor samples relative to the 58P1D12 mRNA or 58ΡΠΜ2 protein in the normal sample indicates the degree of invasiveness. In a specific embodiment, tumor invasiveness is assessed by measuring the extent to which 58 piD12 is expressed in tumor cells, with higher expression indicating greater tumor invasiveness. Another embodiment is to assess the integrity of the 58 pi Di2 nucleotide and amino acid sequences in a biological sample in order to identify perturbations in such molecular structures such as insertions, deletions, substitutions and the like. The presence of one or more perturbations indicates that the tumor is more aggressive. Another embodiment of the present invention relates to a method of observing the development of a malignant disease in an individual over time. In an embodiment, the method of observing an individual's malignant disease over time comprises: determining the amount of protein 142769.doc •84.201021828 58P1D12 mRNA or 581>1〇12 expressed by the cell in the tumor sample; The amount is compared to the amount of 58P1D12 mRNA or 58P1D12 protein expressed in a comparable tissue sample taken from the same individual at different times, wherein the degree of 58P1D12 mRNA or 58P1D12 protein in the tumor sample over time provides information about cancer development. In a specific embodiment, cancer development is assessed by measuring the performance of 58P1D12 over time in tumor cells, wherein increased expression over time indicates cancer progression. In addition, the integrity of the 58P1D12 nucleotide and amino acid sequences in the biological sample can be assessed to identify perturbations in such molecular structures, such as insertions, deletions, substitutions, and the like, in which one or more perturbations are present. Indicates cancer development. The above diagnostic methods can be combined with any of a variety of prognostic and diagnostic protocols known in the art. For example, another embodiment of the present invention relates to a method for observing whether a performance of a 58P1D12 gene and a 58P1D12 gene product (or a disturbance in a 58P1D12 gene and a 58P1D12 gene product) is compatible with a malignant disease phase factor as a diagnosis And the way in which the state of the tissue sample is predicted. Various factors associated with malignant diseases can be utilized, such as the expression of genes associated with malignant diseases and gross cytological observations (see, for example, Bocking et al., 1984, Anal. Quant. Cytol. 6(2): 74-88; Epstein, 1995, Hum. Pathol. 26(2): 223-9; Thorson et al., 1998, Mod. Pathol. 11(6): 543-51; Baisden et al., 1999, Am. J. Surg· Pathol· 23 ( 8): 918-24). For example, a method for observing the performance of the 58P1D12 gene and the 58P1D12 gene product (or the perturbation in the 58p1D12 gene and the 58P1D12 gene product) and another malignant disease-related factor 142769.doc-85-201021828 can be used, Because there is a set of specific factors that are consistent with the disease, it provides key information for diagnosing and speculating the status of tissue samples. Methods for detecting and quantifying the expression of 58p i D丨2 mRNA or protein are described herein, and standard nucleic acid and protein detection and quantification techniques are well known in the art. Standard methods for detecting and quantifying 58P1D12 mRNA include: in situ hybridization using a labeled 58ρ1Ε>12 nucleic acid probe; Northern blotting using a 58P1D12 polynucleotide probe and related techniques; using a specific primer for 58P1D12 Ten RT_PCR* analysis methods; and other amplification type detection methods, such as branch DN A, SISBA, TMA, and the like. In a specific embodiment, semi-quantitative RT-PCR was used to detect and quantify 58 piD12 mRNA expression. Many primers capable of amplifying 58P1D12 can be used for this purpose including, but not limited to, multiple sets of primers specifically described in the private text. In a particular embodiment, a multi-strain or monoclonal antibody that specifically reacts with a wild-type 58P1D12 protein can be used in immunohistochemical assays for tissue testing. IX.) Identifying molecules that interact with 58P1D12梱 The 58P1D12 protein and nucleic acid sequences disclosed herein allow those skilled in the art to identify proteins, small molecules, and other agents that interact with 58P1D12, as well as by 58PID 12 via the art. The pathway of activation of any of the various protocols accepted. For example, one of the so-called interaction intercepting systems (also known as "two-hybrid assay") can be used. In these systems, 'molecular interactions and recombination direct the reporter's expression of transcription factors, thereby characterizing the expression of the reporter gene. Other systems identify intracellular protein-protein interactions by reconstituting eukaryotic transcriptional activators, see, for example, U.S. Patent No. 5,955,28, issued September 21, 1999; July 142, 769.doc -86 - 201021828 20 U.S. Patent No. 5, 925, 523 issued to U.S. Patent No. 5,846,722, issued on Dec. 8, 1998; and U.S. Patent No. 6, s. Algorithms for predicting protein function based on genomes in this technique can also be utilized (see, for example, Marcotte et al., Nature 402: November 4, 1999, 83-86). Alternatively, the peptide library can be screened to identify molecules that interact with the 58P1D12 protein sequence. In such methods, a peptide that binds to 58 pl Di2 is identified by screening a library encoding a set of random amino acids or controlled amino acids. The peptide encoded by the library was expressed as a fusion protein of the phage in vitro protein, and then the phage particle was screened for the 58P1D12 protein. Thus, the appearance of a variety of uses (such as therapeutic, prognostic or diagnostic agents) is thus identified without any prior information about the structure of the desired ligand or receptor molecule. Typical peptide libraries and screening methods that can be used to identify molecules that interact with the 5 8 P1 D12 protein sequence are disclosed, for example, in U.S. Patent No. 5,723,286 issued March 3, 998, and U.S. Patent No. 5,733,731, issued on March 31, 1998. No. Alternatively, the 58P1D12-mediated protein-protein interaction was identified using a cell line expressing 58P1D12. These interactions can be examined using immunoprecipitation techniques (see, e.g., Hamilton B. J. et al. Biochem. Biophys. Res. Commun. 1999, 261: 646-51). The 58P1D12 protein can be immunoprecipitated from the 58P1D12 expressing cell line using an anti-58P1D12 antibody. Alternatively, the His-tagged antibody can be used in a cell strain engineered to express a fusion of 58P1D12 and His-tag (the above vector). The immunosuppressive system can be examined by procedures such as Western blotting, protein 35s_methionine labeling, protein 142769.doc •87-201021828 qualitative microsequencing, silver staining and two-dimensional gel electrophoresis. Protein binding of the complex. Small molecules and ligands that interact with 58p丨D12 can be identified via the relevant examples of such screening assays. For example, small molecules that interfere with protein function can be identified, including interference with 58P1D12-mediated phosphorylation and dephosphorylation, interaction with DNA or RNA molecules (as an indicator of cell cycle regulation), second messenger signaling or A molecule that has the ability to form tumors. Similarly, small molecules that modulate 58P1D12-related ion channels, protein pumps, or cellular communication functions are identified and used to treat patients with cancers that exhibit 58 PLD12 (see © Hille, B, for example, Ionic Channels of Excitable Membranes, 2nd edition, Sinauer Assoc. , Sunderland, MA, 1992). In addition, ligands that modulate 58P1D12 function can be identified based on their ability to bind 58 piD12 and activate reporter constructs. Typical methods are described, for example, in U.S. Patent No. 5,928,868 issued July 27, 999. And including a method for forming a hybridizing ligand, wherein at least one of the ligands is a small molecule. In an illustrative embodiment, 'using a cell engineered to express a 58P1D12 fusion protein and a DNA binding protein will hybridize the ligand/small Molecular and cDNA library transcriptional activation of egg white fusion protein. The cell-inducible gene contains a reporter gene, which is regulated when the first fusion protein and the second fusion protein are close to each other. This event only binds to the hybrid ligand. Hybrid whitening target sites occur only when selecting the target gene. Unknown small molecule or unknown ligand. This method provides a method for identifying a modulator that activates hydrazine to inhibit 58p 丨 D 丨 2. One embodiment of the present invention comprises screening and 58 〇 〇 12 amine 142769. -88- 201021828 Method for Molecular Interaction of Molecular Acid Sequences The method comprises the steps of: contacting a knife group with a 58P1D12 amino acid sequence; and making the molecular group with 581 > 11) 12 amine groups under conditions conducive to interaction Acid sequence interaction; determining the presence or absence of a molecule that interacts with the 58P1D12 amino acid sequence; and then separating the molecule that does not interact with the 58P1D12 amino acid sequence and the molecule that interacts with the 58piD12 amine S under-sequence. In a particular embodiment, the method further comprises purifying, characterizing, and identifying a molecule that interacts with the 58P1D12 amino acid sequence. The identified molecule can be used to modulate the function performed by the 58P1D12. In a preferred embodiment, 58 piE is made. The 12 amino acid sequence is contacted with a peptide library. x.) Therapeutic methods and compositions are identified as being normally present in a limited set of tissues, but also in cancer (such as those listed in Table I) 58P1D12, a protein expressed in cancers, opens up a variety of therapeutic approaches for the treatment of these cancers. It is worth noting that targeted anti-tumor therapies are useful even when targeting Q proteins in normal tissues, even normal living organ tissues. When expressed, the vital organs are organs necessary for life, such as the heart or the colon. Non-living organs are organs that the individual can survive after removal. Examples of non-living organs are the ovaries, breasts, and prostate. For example, Herceptin® is an FDA-approved drug consisting of antibodies that are immunoreactive with proteins known as HER2, HER2/neu and erb-b-2. Herceptin is marketed by Genentech and is a successful anti-tumor agent in business. Herceptin’s sales in 2002 reached nearly $400 million. Herceptin can treat HER2-positive metastatic breast cancer. However, 142769.doc •89· 201021828 However, the performance of HER2 is not limited to these tumors. This protein is also expressed in a variety of normal tissues. In particular, HER2/neu is known to be present in normal kidneys and hearts, and therefore such tissues are present in all human recipients of Herceptin. Latif, Z. et al., B.J.U. International (200 2) 89: 5-9 also demonstrated that HER2/neu is present in normal kidneys. As evidenced in this paper (which assesses whether renal cell carcinoma is a preferred indication for anti-HER2 antibodies (such as Herceptin), both protein and mRNA are formed in benign kidney tissue. It is worth noting that the HER2/neu protein is strongly overexpressed in benign kidney tissue. Although HER2/neu is expressed in life tissues such as the heart and kidney, Herceptin is an FDA-approved and commercially viable drug. The effect of Herceptin on heart tissue (ie, "cardiac poisoning") is only a side effect of treatment. When treating patients with Herceptin alone, significant cardiac toxicity occurs in a very low percentage of patients. To minimize cardiac toxicity, there are stricter access requirements for treatment with HER2/neu. Factors such as the cause of heart disease are assessed before treatment is available. Of particular note is that although the kidney tissue is shown to behave normally and may even perform better than heart tissue, the kidney does not have any detectable Herceptin side effects. In addition, in the normal tissues of many types of HER2, there are few side effects. Only the heart tissue shows any appreciable side effects. Tissues with particularly prominent HER2/neu properties, such as kidneys, have not been the basis of any side effects. In addition, a favorable therapeutic effect of the anti-tumor therapy Erbitux (ImClone) targeting the epidermal growth factor receptor (EGFR) has been found. EGFR is also exhibited in a variety of normal tissues. After the use of anti-EGFR therapeutics, 142769.doc -90· 201021828 in the normal group, there were extremely limited by-products in the weaving. The general side effect of treatment with egfr is severe skin treatment, which is observed in 1% of treatments. Therefore, the target protein is not as good as protein in normal tissues or even normal living tissues! ^ The utility of a therapeutic agent for certain tumors in which the protein is also overexpressed. For example, the performance in living organs is not harmful in and of itself. In addition, organs that are considered to be exempt, such as the anterior parotid gland and ovary, can be removed without affecting life. Finally, some life steamers are not affected by normal organ performance due to immune privileges. Immune privilege 器官 An organ that is isolated from blood by blood-organ barriers and therefore cannot be reached without fatigue therapy. Examples of immune privileged organs are brain and testicles. Therefore, a therapeutic method for inhibiting the activity of the 58P1D12 protein is suitable for patients suffering from cancer exhibiting 58PUM2. These treatments are usually divided into three categories. The first type of method modulates the 58 piD12 energy associated with tumor cell growth, thereby inhibiting or delaying tumor cell growth or inducing tumor cell killing. φ The second type of method encompasses a variety of methods for inhibiting the binding or association of the 58P1D12 protein with its binding partner or with other proteins. A third type of method contains a variety of methods for inhibiting transcription of the 58P1D12 gene or translation of 58P1D12 mRNA. X. A.) Anti-cancer vaccine The present invention provides a cancer vaccine comprising a 58P1D12-related protein or a 58P1D12-related nucleic acid. Considering the performance of 58P1D12, cancer vaccine prevention and/or salty treatment showed that 58P1D12 cancer had minimal or no effect on non-target tissues. Tumor technology for producing a cell-mediated fluid immunoreactivity in vaccines 142769.doc -91- 201021828 Originally known as anti-cancer therapy, it is well known in the art and has been used with nine types of PSMA and rodent PAP immunogens. For use in prostate cancer* (Hodge et al. '1995, Int. J. Cancer 63:231-237; Fong et al., 1997, J. Immunol. 159: 3113-3117). Such methods can be readily carried out by using a 58P1D12-related protein or a nucleic acid molecule encoding 58P1D12 and a recombinant vector capable of expressing and presenting a 58P1D12 immunogen, which typically comprises a plurality of T cell epitopes or antibodies. Those skilled in the art will appreciate that a variety of vaccine systems for delivering immunoreactive antigenic determinants are known in the art (see, for example, ©)
Heryln等人,Ann Med 1999年 2 月 31(1): 66-78 ; Maruyama 等人,Cancer Immunol Immunother, 2000 年 6 月,49(3): 123-32)。簡而言之’該等在哺乳動物中產生免疫反應(例 如細胞介導免疫反應及/或體液免疫反應)之方法包含以下 步驟:使哺乳動物免疫系統曝露於免疫反應性抗原決定基 (例如存在於圖1中所示之58P1D12蛋白質或其類似物旋同 源物中的抗原決定基)’以使得哺乳動物產生對彼抗原決 定基特異之免疫反應(例如產生特異性識別彼抗原決c基© 之抗體)。 可將整個58P1D12蛋白質、其免疫原性區域或抗原淑定 基組合並藉由多種方式傳遞。該等疫苗組合物可包括例如 脂肽(例如 Vitiello,A.等人,j. Clin. Invest. 95:341, 1995)、囊封於聚(dl-丙交酯-共·乙交酯「pLG」)微求體 中之狀組合物(參見例如Eldridge等人,Molec. Immunol. 28: 287-294,1991 ; Alonso等人,Vaccine 12: 299-306, 142769.doc -92- 201021828 1994 ; Jones等人,Vaccine 13: 675-681,1995)、包含於免 疫刺激複合物(ISCOMS)中之肽組合物(參見例如Takahashi 等人,Nature 344: 873-875,1990 ; Hu 等人,Clin Exp Immunol. 113:23 5-243, 1998)、多重抗原肽系統(MAP)(參 見例如 Tam,J. P.,Proc. Natl. Acad. Sci. U.S.A. 85:5409-5413, 1988 ; Tam, J.P., J. Immunol. Methods 196:17-32, 1996)、以多價肽形式調配之肽、用於彈道式傳遞系統之 肽、典型結晶肽、病毒傳遞載體(Perkus, Μ. E.等人,在 Concepts in vaccine development, Kaufmann, S. Η. E.編, 第 379 頁,1996 中;Chakrabarti,S.等人,Nature 320:535, 1986 ; Hu, S. L.等人,Nature 320:537,1986 ; Kieny,Μ.-Ρ· 等人,AIDS Bio/Technology 4:790,1986 ; Top, F. H.等 人,J. Infect. Dis. 124:148, 1971 ; Chanda,P. K.等人, Virology 175:535,1990)、病毒來源或合成來源之顆粒(例 如 Kofler,N.等人,J. Immunol· Methods. 192:25, 1996 ; Eldridge, J. Η·等人,Sem. Hematol. 30:16,1993 ; Falo, L. D·,Jr.等人,Nature Med. 7:649,1995)、佐劑(Warren, H. S.,Vogel, F. R.及 Chedid,L. A. Annu. Rev· Immunol· 4:369, 1986; Gupta, R. K.等人,Vaccine 11:293, 1993)、脂質體 (Reddy, R.等人,.J. Immunol. 148:1585,1992 ; Rock, Κ· L·, Immunol. Today 17:131,1996)或裸 cDNA 或顆粒吸收 cDNA(Ulmer, J. B.等人,Science 259:1745, 1993 ;Heryln et al, Ann Med, February 31, 31(1): 66-78; Maruyama et al, Cancer Immunol Immunother, June 2000, 49(3): 123-32). Briefly, the method of generating an immune response (eg, a cell-mediated immune response and/or a humoral immune response) in a mammal comprises the steps of exposing the mammalian immune system to an immunoreactive epitope (eg, present) The 58P1D12 protein or analog thereof shown in Figure 1 is an epitope in a homolog of a homologue" such that the mammal produces an immune response specific for the epitope (eg, produces a specific recognition of the antigen) Antibody). The entire 58P1D12 protein, its immunogenic region or antigenic epitope can be combined and delivered in a variety of ways. Such vaccine compositions may include, for example, lipopeptides (e.g., Vitiello, A. et al., j. Clin. Invest. 95: 341, 1995), encapsulated in poly(dl-lactide-co-glycolide "pLG" ") a composition in a micro-soak (see, for example, Eldridge et al, Molec. Immunol. 28: 287-294, 1991; Alonso et al, Vaccine 12: 299-306, 142769.doc -92-201021828 1994; Jones Et al, Vaccine 13: 675-681, 1995), peptide compositions contained in immunostimulating complexes (ISCOMS) (see, for example, Takahashi et al, Nature 344: 873-875, 1990; Hu et al, Clin Exp Immunol 113:23 5-243, 1998), Multiple Antigen Peptide System (MAP) (see for example Tam, JP, Proc. Natl. Acad. Sci. USA 85: 5409-5413, 1988; Tam, JP, J. Immunol. Methods 196:17-32, 1996), peptides formulated in the form of multivalent peptides, peptides for ballistic delivery systems, typical crystalline peptides, viral delivery vectors (Perkus, Μ. E. et al., in Concepts in vaccine development , Kaufmann, S. Η. E., ed., 379, 1996; Chakrabarti, S. et al., Nature 320: 535, 1986; Hu, SL et al., Nature 3 20:537,1986; Kieny, Μ.-Ρ· et al, AIDS Bio/Technology 4: 790, 1986; Top, FH et al., J. Infect. Dis. 124: 148, 1971; Chanda, PK et al. Virology 175: 535, 1990), from viral sources or synthetic sources (e.g., Kofler, N. et al, J. Immunol. Methods. 192:25, 1996; Eldridge, J. et al., Sem. Hematol. 30 :16,1993 ; Falo, L. D., Jr. et al., Nature Med. 7: 649, 1995), adjuvants (Warren, HS, Vogel, FR and Chedid, LA Annu. Rev. Immunol· 4:369 , 1986; Gupta, RK et al, Vaccine 11: 293, 1993), liposomes (Reddy, R. et al., J. Immunol. 148: 1585, 1992; Rock, Κ·L·, Immunol. Today 17: 131, 1996) or naked cDNA or granule absorption of cDNA (Ulmer, JB et al, Science 259: 1745, 1993;
Robinson, H. L., Hunt, L. A·,及 Webster,R. G.,Vaccine 11:957, 1993 ; Shiver,J. W.等人,在Concepts in vaccine I42769.doc -93- 201021828 development, Kaufmann, S. Η. E.編,第 423 頁,1996 中; Cea.se, K. B. Sl Berzofsky, J. A., Annu. Rev. Immunol. 12:923, 1994 ;及 Eldridge, J. H.等人,Sem. Hematol. 30:16,1993)。亦可使用毒素靶向傳遞技術,亦稱為受體 介導托向技術,諸如 Avant Immunotherapeutics, Inc. (Needham, Massachusetts)之彼等技術 ° 在患有58P1D12相關癌症之患者中,亦可將本發明之疫 苗及抗體組合物與用於癌症之其他治療(例如手術、化學 療法、藥物療法、放射療法等)聯合使用,包括與免疫佐 劑(諸如IL-2、IL-12、GM-CSF及其類似佐劑)組合使用。 細胞疫苗: 可使用鑑別58P1D12蛋白質内結合相應HLA等位基因之 肽的特定算法(例如Brown University,BIMAS及 SYFPEITHI)測定CTL抗原決定基。在一較佳實施例中, 58P1D12免疫原含有使用此項技術中熟知之技術所鑑別的 一或多種胺基酸序列,諸如先前所揭示之各表中所示的序 列,或具有由I類HLA基元/超基元(例如表IV(A)、表IV(D) 或表IV(E))所說明之8、9、10或11個胺基酸的肽及/或具有 至:> 9個胺基酸且包含II類HLA基元/超基元(例如表IV(B) 或表IV(C))的肽。如此項技術中所瞭解,I類HLA結合凹槽 基本上在末端封閉,以便僅有特定尺寸範圍之肽方可裝配 於凹槽内且進行結合,I類HL A抗原決定基通常長度為8、Robinson, HL, Hunt, L. A., and Webster, RG, Vaccine 11:957, 1993; Shiver, JW, et al., in Concepts in vaccine I42769.doc -93- 201021828 development, Kaufmann, S. Η. E. Edited, p. 423, 1996; Cea.se, KB Sl Berzofsky, JA, Annu. Rev. Immunol. 12: 923, 1994; and Eldridge, JH et al., Sem. Hematol. 30:16, 1993). Toxin targeting delivery techniques, also known as receptor-mediated targeting techniques, such as those of Avant Immunotherapeutics, Inc. (Needham, Massachusetts) can also be used. In patients with 58P1D12-related cancers, this can also be used. The vaccines and antibody compositions of the invention are used in combination with other therapies for cancer (eg, surgery, chemotherapy, drug therapy, radiation therapy, etc.), including with immunological adjuvants (such as IL-2, IL-12, GM-CSF, and It is used in combination with an adjuvant. Cell Vaccine: CTL epitopes can be determined using specific algorithms (e.g., Brown University, BIMAS and SYFPEITHI) that identify peptides within the 58P1D12 protein that bind to the corresponding HLA allele. In a preferred embodiment, the 58P1D12 immunogen comprises one or more amino acid sequences identified using techniques well known in the art, such as those shown in the various tables previously disclosed, or having a class I HLA. a peptide of a 8, 9 or 10 or 11 amino acids as described in Table IV (A), Table IV (D) or Table IV (E) and/or having: > A peptide of 9 amino acids and comprising a class II HLA motif/supermotif (e.g., Table IV (B) or Table IV (C)). As is understood in the art, the class I HLA binding groove is substantially occluded at the ends such that only peptides of a particular size range can fit within the groove and bind, and class I HL A epitopes typically have a length of 8,
9、1 0或11個胺基酸。相比之下,II類HLA結合凹槽基本上 在末端開放,因此具有約9個或9個以上胺基酸之肽可與II 142769.doc -94- 201021828 類HLA分子結合。由於1類1〇^入與11類11£八之間存在結合凹 槽差異,因此I類HLA基元具有長度特異性,亦即,Γ類基 元之位置2為肽之胺基至羧基方向上的第二胺基酸。η類基 元中之胺基酸位置係相對於彼此而不是相對於整個肽而言 的’亦即,其他胺基酸可與具有基元之序列之胺基及/或 羧基末端連接。II類HLA抗原決定基通常長度為9、1〇、 11、12、13、14、15、16、17、18、19、20、21、22、 23、24或25個胺基酸或長於25個胺基酸。 多種用於在哺乳動物中產生免疫反應之方法於此項技術 中已知(例如作為融合瘤產生中之第一步)。在哺乳動物中 產生免疫反應之方法包含使哺乳動物免疫系統曝露於蛋白 質(例如58P1D12蛋白質)上之免疫原性抗原決定基以便產 生免疫反應。一典型實施例係由藉由以下步驟在宿主中針 對58P1D12產生免疫反應的方法組成:使宿主與足量之至 少一種58P1D12 Β細胞或細胞毒性Τ細胞抗原決定基或其類 似物接觸;及在至少一個週期性間隔之後,使該宿主與 5 8Ρ1D12 Β細胞或細胞毒性τ細胞抗原決定基或其類似物再 接觸。一特定實施例係由針對58P1D12相關蛋白質或人造 多抗原決定基肽產生免疫反應的方法組成,該方法包含: 以疫苗製劑形式將58P1D12免疫原(例如58P1D12蛋白質或 其肽片段、58P1D12融合蛋白質或類似物等)投與人類或另 一哺乳動物。該等疫苗製劑通常進一步含有適當佐劑(參 見例如美國專利第6,146,635號)或通用輔助抗原決定基, 諸如PADRETM肽(Epimmune Inc” San Diego,CA ;參見例 142769.doc -95- 201021828 如 Alexander等人,J. immun〇i· 2000 164(3); 164(3): 1625-1633 ; Alexander等人,lmmunity 1994 1(9): 751-761 ;及 Alexander等人 ’ Immunol. Res· 1998 18(2): 79-92)。一種 替代方法包含藉由以下步驟在個體中針對58PID 12免疫原 產生免疫反應:將包含編碼58P1D12免疫原之DNA序列的 DNA分子活體内投與個體身體之肌肉或皮膚,該〇ΝΑ序列 與控制DNA序列表現之調節序列可操作性連接;其中〇ΝΑ 分子由細胞吸汝,DNA序列在細胞中表現且針對免疫原產 生免疫反應(參見例如美國專利第5,962,428號)。視需要亦 投與遺傳疫苗促進劑’諸如陰離子脂質;皂普;凝集素; 雌激素化合物;羥基化低碳烷基;二甲亞硪:及脲。此 外’可投與模擬58P1D12之抗遺傳型抗體,以便針對標纪 抗原產生反應。 核酸疫苗: 本發明之疫运組合物包括核酸介導形式。可將編碼本發 明之蛋白質的DNA或RNA投與患者。可使用遺傳免疫方法 針對表現58P1D12之癌細胞產生預防性或治療性體液免疫 反應及細胞免疫反應。可將包含編碼58p 1 d 12相關蛋白質/ 免疫原之DNA及適當調節序列的構築體直接注入個體之肌 肉或皮膚内’以使得肌肉或皮膚之細胞吸收構築體且表現 所編碼之58PLD12蛋白質/免疫原。或者,疫苗包含 58ΗΓΗ2相關蛋白質。58ΡΠΜ2相關蛋白質免疫原之表現 導致針對具有58P1D12蛋白質之細胞產生預防性或治療性 體液免疫及細胞免疫。可使用此項技術中已知的多種預防 142769.doc -96- 201021828 性及治療性遺傳免疫技術。基於核酸之傳遞描述於例如以 下文獻中:Wolff等人,Science 247:1465 (1990)及美國專 利第 5,580,859 號、第 5,589,466 號、第 5,804,566 號、第 5,739,1 18 號、第 5,736,524 號、第 5,679,647 號;WO 98/04720。基於DNA之傳遞技術之實例包括「裸DNA」、 促進性(布比卡因(bupivicaine)介導、聚合物介導、肽介 導)傳遞、陽離子脂質複合物及顆粒介導(「基因槍」)或壓 力介導傳遞(參見例如美國專利第5,922,687號)。 ® 出於治療性或預防性免疫目的,可經由病毒或細菌載體 表現本發明之蛋白質。可在本發明之實施中使用的多種病 毒基因傳遞系統包括(但不限於)牛疫(vaccinia)病毒、禽癌 (fowlpox)病毒、金絲雀痘(canarypox)病毒、腺病毒、流感 病毒、脊髓灰質炎病毒、腺相關病毒、慢病毒及辛得比斯 病毒(sindbis virus)(參見例如 Restifo, 1996, Curr. Opin. Immunol. 8:65 8-663 ; Tsang 等人 J. Natl. Cancer Inst. 87:982-990 (1995))。亦可藉由將編碼58P1D12相關蛋白質 之裸DNA引入(例如肌肉内或皮内)患者中以誘導抗腫瘤反 應來使用非病毒傳遞系統。 牛痘病毒例如用作載體以表現編碼本發明肽之核苷酸序 列。重組牛痘病毒引入宿主中後,其表現蛋白質免疫原性 肽且由此誘發宿主免疫反應。免疫方案中適用之牛痘載體 及方法描述於例如美國專利第4,722,848號中。另一種載體 為 BCG(卡介苗(Bacille Calmette Guerin))。BCG載體描述 於 Stover等人,Nature 351: 456-460 (1991)中。根據本文 142769.doc -97- 201021828 中之說明,熟習此項技術者將瞭解適用於本發明之肽之治 療性投與或免疫的多種其他載體,例如腺病毒載體及腺相 關病毒載體、逆轉錄病毒載體、傷寒沙門氏桿菌 (Salmonella typhi)載體、脫毒炭疽毒素載體及其類似載 體。 因此,基因傳遞系統用於傳遞58P1D12相關核酸分子。 在一實施例中,使用全長人類58P1D12 cDNA。在另一實 施例中’使用編碼特異性細胞毒性T淋巴細胞(ctl)及/或 抗體抗原決定基之5 8P1D12核酸分子。 離II疫苗 亦可使用多種離體策略產生免疫反應。一方法包括使用 抗原呈現細胞(APC)(諸如樹突狀細胞(DC))將58P1D12抗原 呈現給患者免疫系統。樹突狀細胞表現I類及Η類MHC分 子、B7共刺激劑及IL-12,且因此為高度專門化之抗原呈 現細胞。在前列腺癌中,經前列腺特異性膜抗原(PSMA) 之肽脈衝標記的自體樹突狀細胞正用於I期臨床試驗中以 刺激前列腺癌患者之免疫系統(Tjoa等人,1996,Prostate 28:65-69 ; Murphy 等人,1996,Prostate 29:371-380)。因 此,在I類或II類MHC分子之背景下,可使用樹突狀細胞將 5 8P1D12肽呈現給T細胞。在一實施例中,用能夠結合I類 及/或II類MHC分子之58P1D12肽脈衝標記自體樹突狀細 胞。在另一實施例中,用完整58P1D12蛋白質脈衝標記樹 突狀細胞。另一實施例包括使用此項技術中已知的多種執 行載體對58P1D12基因於樹突狀細胞中之過度表現進行工 142769.doc -98- 201021828 程改造,該等執行載體諸如腺病毒(Arthur等人,1 997,9, 10 or 11 amino acids. In contrast, class II HLA binding grooves are substantially open at the ends, so peptides having about 9 or more amino acids can bind to class II 142769.doc -94 - 201021828 HLA molecules. Since there is a difference in the binding groove between the 1 class 1 and the 11 class 11 £8, the class I HLA motif has length specificity, that is, the position 2 of the indole motif is the amino group to carboxyl direction of the peptide. The second amino acid. The amino acid positions in the η-type motif are relative to each other rather than to the entire peptide, i.e., other amino acids may be attached to the amine and/or carboxy terminus of the sequence having the motif. Class II HLA epitopes are typically 9, 1 , 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24 or 25 amino acids or longer than 25 Amino acid. A variety of methods for generating an immune response in a mammal are known in the art (e.g., as a first step in the production of fusion tumors). A method of producing an immune response in a mammal comprises exposing the mammalian immune system to an immunogenic epitope on a protein (e.g., 58P1D12 protein) to produce an immune response. A typical embodiment consists of a method of generating an immune response against 58P1D12 in a host by contacting the host with a sufficient amount of at least one 58P1D12 sputum cell or a cytotoxic sputum cell epitope or analog thereof; and at least After a periodic interval, the host is re-contacted with 5 8Ρ1D12 Β cells or cytotoxic tau cell epitopes or analogs thereof. A specific embodiment consists of a method for producing an immune response against a 58P1D12-related protein or an artificial multi-receptor peptide, the method comprising: administering a 58P1D12 immunogen in the form of a vaccine formulation (eg, 58P1D12 protein or peptide fragment thereof, 58P1D12 fusion protein or the like) Matters, etc.) are administered to humans or to another mammal. Such vaccine formulations typically further contain a suitable adjuvant (see, e.g., U.S. Patent No. 6,146,635) or a universal helper epitope such as the PADRETM peptide (Epimmune Inc" San Diego, CA; see Example 142769.doc-95-201021828 Alexander et al, J. immun〇i. 2000 164(3); 164(3): 1625-1633; Alexander et al, lmmunity 1994 1(9): 751-761; and Alexander et al.' Immunol. Res. 1998 18(2): 79-92). An alternative method comprises generating an immune response against an 58PID 12 immunogen in an individual by the following steps: injecting a DNA molecule comprising a DNA sequence encoding a 58P1D12 immunogen into a muscle of an individual's body in vivo Or the skin, the 〇ΝΑ sequence is operably linked to a regulatory sequence that controls the expression of the DNA sequence; wherein the 〇ΝΑ molecule is sucked by the cell, the DNA sequence is expressed in the cell and an immune response is produced against the immunogen (see, e.g., U.S. Patent No. 5,962,428) In addition, genetic vaccine promoters such as anionic lipids; saponins; lectins; estrogenic compounds; hydroxylated lower alkyl groups; dimethyl hydrazine: and urea. An anti-genotype antibody mimicking 58P1D12 to produce a response against a target antigen. Nucleic Acid Vaccine: The infectious agent composition of the present invention comprises a nucleic acid-mediated form. DNA or RNA encoding the protein of the present invention can be administered to a patient. The genetic immunization method produces a prophylactic or therapeutic humoral immune response and a cellular immune response against a cancer cell expressing 58P1D12. A construct comprising a DNA encoding a 58p 1 d 12-related protein/immunogen and an appropriate regulatory sequence can be directly injected into the muscle of the individual. Or in the skin 'so that the muscle or skin cells absorb the construct and express the encoded 58PLD12 protein/immunogen. Or, the vaccine contains 58ΗΓΗ2 related proteins. The performance of the 58ΡΠΜ2 related protein immunogen leads to prophylactic against cells with 58P1D12 protein Or therapeutic humoral immunity and cellular immunity. A variety of prophylactic 142769.doc-96-201021828 sexual and therapeutic genetic immunization techniques known in the art can be used. Nucleic acid-based delivery is described, for example, in Wolff et al, Science 247:1465 (1990) and US Patent 5,580,859 No. 5,589,466, 5,804,566, 5,739,1 18, 5,736,524, 5,679,647; WO 98/04720. Examples of DNA-based delivery techniques include "naked DNA," promoting (bupivicaine-mediated, polymer-mediated, peptide-mediated) delivery, cationic lipid complexes, and particle-mediated ("gene guns" Or pressure-mediated delivery (see, e.g., U.S. Patent No. 5,922,687). ® The protein of the invention can be expressed via a viral or bacterial vector for therapeutic or prophylactic immunization purposes. A variety of viral gene delivery systems that can be used in the practice of the invention include, but are not limited to, vaccinia virus, fowlpox virus, canarypox virus, adenovirus, influenza virus, gray matter of the polio Inflammatory virus, adeno-associated virus, lentivirus and sindbis virus (see for example Restivo, 1996, Curr. Opin. Immunol. 8:65 8-663; Tsang et al. J. Natl. Cancer Inst. 87 :982-990 (1995)). A non-viral delivery system can also be used by introducing a naked DNA encoding a 58P1D12-related protein into a patient (e.g., intramuscular or intradermal) to induce an anti-tumor response. Vaccinia virus is used, for example, as a vector to express a nucleotide sequence encoding a peptide of the present invention. Upon introduction of the recombinant vaccinia virus into the host, it exhibits a protein immunogenic peptide and thereby induces a host immune response. Vaccinia vectors and methods suitable for use in the immunization protocol are described, for example, in U.S. Patent No. 4,722,848. Another vector is BCG (Bacille Calmette Guerin). The BCG vector is described in Stover et al, Nature 351: 456-460 (1991). Those skilled in the art will be aware of a variety of other vectors suitable for therapeutic administration or immunization of peptides of the invention, such as adenoviral vectors and adeno-associated viral vectors, reverse transcription, as described in 142769.doc-97-201021828. Viral vector, Salmonella typhi vector, detoxified anthrax toxin vector and the like. Thus, gene delivery systems are used to deliver 58P1D12-related nucleic acid molecules. In one embodiment, a full length human 58P1D12 cDNA is used. In another embodiment, a 58P1D12 nucleic acid molecule encoding a specific cytotoxic T lymphocyte (ctl) and/or an antibody epitope is used. From the II vaccine, a variety of ex vivo strategies can also be used to generate an immune response. One method involves the presentation of the 58P1D12 antigen to the patient's immune system using antigen presenting cells (APCs), such as dendritic cells (DCs). Dendritic cells exhibit class I and terpenoid MHC molecules, B7 costimulators, and IL-12, and are therefore highly specialized antigen presenting cells. In prostate cancer, autologous dendritic cells pulsed with peptides of prostate specific membrane antigen (PSMA) are being used in phase I clinical trials to stimulate the immune system of prostate cancer patients (Tjoa et al., 1996, Prostate 28). :65-69; Murphy et al., 1996, Prostate 29:371-380). Thus, in the context of a class I or class II MHC molecule, dendritic cells can be used to present the 58P1D12 peptide to T cells. In one embodiment, the autologous dendritic cells are pulsed with a 58P1D12 peptide capable of binding to a class I and/or class II MHC molecule. In another embodiment, dendritic cells are pulsed with intact 58P1D12 protein. Another embodiment includes the exemplification of the overexpression of the 58P1D12 gene in dendritic cells using a variety of execution vectors known in the art, such as adenovirus (Arthur et al.) People, 1 997,
Cancer Gene Ther· 4:17-25)、逆轉錄病毒(Henderson 等 人,1996, Cancer Res. 56:3763-3770)、慢病毒、腺相關病 毒、DNA 轉染(Ribas 等人,1997,Cancer Res. 57:2865-2869)或腫瘤來源之RNA轉染(Ashley等人,1997,J. Exp. Med. 186:1177-1182)。表現58P1D12之細胞亦可經工程改 造以表現免疫調節物(諸如GM-CSF)且可用作免疫劑。 X.B.)作為基於抗體之療法之標靶的58p1D12 5 8P1D12為基於抗體之治療策略的誘人標靶。用於乾向 胞外分子與胞内分子的多種抗體策略,於此項技術中已知 (參見例如補體介導殺死作用及ADCC介導殺死作用以及胞 内抗體之用途)。由於各種譜系之癌細胞相對於對應正常 細胞表現58P1D12,因此實施58PiD12免疫反應性組合物 之全身性投與,該等組合物呈現優異的敏感性而無因免疫 反應性組合物與非標靶器官及組織結合所引起的毒性、非 特異性及/或非標靶效應。與58P1D12之結構域特異性反應 的抗體可以與毒素或治療劑之接合物形式或以能夠抑制細 胞增殖或功能之裸抗體形式用於全身性治療表現58piD12 之癌症。 可將58P1D12抗體引入患者中,以便抗體結合58p1D12 並調節功能,諸如與結合搭配物之相互作用,且從而介導 腫瘤細胞之毀滅及/或抑制腫瘤細胞之生長。該等抗體藉 以發揮治療作用之機制可包括補體介導細胞溶解、抗體依 賴細胞之細胞毒性、調節58plD12之生理功能、抑制配體 142769.doc -99· 201021828 結合或信號轉導途徑、調節腫瘤細胞分化、改變腫瘤血管 生成因子分布及/或細胞凋亡。 熟習此項技術者應瞭解,抗體可用於特異性乾向並結合 免疫原性分子,諸如圖1中所示之58P1D12序列之免疫原性 Εΐ域。此外’熟習此項技術者應瞭解,通常將抗體與細胞 毋性劑接合(參見例如Slevers等人,Bl〇〇d 93:11 3678· 3 684(1999年6月1日))。當將細胞毒性劑及/或治療劑直接 傳遞至細胞時(諸如藉由將其與對由彼細胞(例如5 8 p 1 d 12 ) 表現之分子特異的抗體接合),細胞毒性劑對彼等細胞發 揮已知的生物效應(亦即細胞毒性)。 使用抗體-細胞毒性劑接合物殺死細胞之多種組合物及 方法於此項技術中已知。在癌症之背景下,典型方法需要 將生物有效量之接合物投與具有腫瘤之動物,該接合物包 含與粗向藥劑(例如抗58P1D12抗體)連接之所選細胞毒性 劑及/或治療劑’該靶向藥劑結合細胞表面上所表現、可 與細胞表面結合或定位於細胞表面上之標諸(例如 58P1D12)。一典型實施例為將細胞毒性劑及/或治療劑傳 遞至表現58P1D12之細胞的方法,該方法包含將細胞毒性 劑與免疫特異性結合58P1D12抗原決定基之抗體接合及使 細胞曝露於抗體-藥劑接合物。另一說明性實施例為治療 懷疑罹患已轉移癌症之個體的方法,該方法包含將醫藥組 合物非經腸投與該個體之步驟,該醫藥組合物包含治療有 效量之抗體與細胞毒性劑及/或治療劑之接合物。 使用抗58P1D12抗體之癌症免疫療法可根據其他類型癌 142769.doc -100- 201021828 症之治療中已成功使用的多種方法來執行,該等類型癌症 包括(但不限於)結腸癌(Arlen等人,1998,Crit. Rev. Immunol. 1 8:133-138)、多發性骨髓瘤(Ozaki 等人,1 997, Blood 90:3179-3186 ; Tsunenari等人,1997,Blood 90:2437-2444)、胃癌(Kasprzyk等人,1992,Cancer Res. 52:2771-2776)、B 細胞淋巴瘤(Funakoshi 等人,1996, J. Immunother. Emphasis Tumor Immunol. 19:93-101)、白血 病(Zhong等人,1996, Leuk· Res. 20:581-589)、結腸直腸 ❹ 癌(Moun等人,1994,Cancer Res. 54:6160-6166 ; Velders 等人,1995,Cancer Res. 55:4398-4403)及乳癌(Shepard 等 人,1991, J. Clin. Immunol. 11:117-127)。有些治療方法包 括將裸抗體與毒素或放射性同位素接合,諸如分別將Y91 或 I131 與抗 CD20 抗體(例如 ZevalinTM,IDEC Pharmaceuticals Corp.或 Bexxar™,Coulter Pharmaceuticals)接合,而其他 方法包括將抗體與其他治療劑共投與,諸如將赫赛汀(曲 妥珠單抗(trastuzu Mab))與太平洋紫杉醇(paclitaxel ; Genentech,Inc)共投與。可將抗體與治療劑接合。為治療 卵巢癌,例如可結合放射、化學療法或激素切除術投與 58P1D12抗體。亦可將抗體與毒素接合,諸如與刺孢黴素 接合(例如 Mylotarg™ ’ Wyeth-Ayerst,Madison, NJ,與抗 腫瘤抗生素刺孢黴素接合之重組人源化IgG4 κ抗體)或與美 登醇接合(例如基於紫杉烷之腫瘤活化前藥TAP平台, ImmunoGen, Cambridge,MA ;亦參見例如美國專利 5,416,064)或與奥利斯塔汀 E(Auristatin E)接合(Nat 142769.doc -101 - 201021828Cancer Gene Ther· 4:17-25), retrovirus (Henderson et al., 1996, Cancer Res. 56:3763-3770), lentivirus, adeno-associated virus, DNA transfection (Ribas et al., 1997, Cancer Res) 57:2865-2869) or tumor-derived RNA transfection (Ashley et al., 1997, J. Exp. Med. 186:1177-1182). Cells expressing 58P1D12 can also be engineered to express immunomodulators (such as GM-CSF) and can be used as an immunizing agent. X.B.) 58p1D12 5 8P1D12, which is the target of antibody-based therapies, is an attractive target for antibody-based therapeutic strategies. A variety of antibody strategies for stem-to-extracellular and intracellular molecules are known in the art (see, for example, complement-mediated killing and ADCC-mediated killing and the use of intracellular antibodies). Since cancer cells of various lineages express 58P1D12 relative to corresponding normal cells, systemic administration of the 58PiD12 immunoreactive composition is carried out, and the compositions exhibit excellent sensitivity without immunoreactive composition and non-target organ And toxicity, non-specific and/or non-target effects caused by tissue binding. An antibody that specifically reacts with the domain of 58P1D12 can be used in a systemic treatment of a cancer exhibiting 58 piD12 in the form of a conjugate of a toxin or a therapeutic agent or in the form of a naked antibody capable of inhibiting cell proliferation or function. The 58P1D12 antibody can be introduced into a patient such that the antibody binds to 58p1D12 and modulates function, such as interaction with the binding partner, and thereby mediates the destruction of tumor cells and/or inhibits the growth of tumor cells. The mechanisms by which these antibodies exert a therapeutic effect may include complement-mediated cytolysis, antibody-dependent cell cytotoxicity, regulation of physiological functions of 58plD12, inhibition of ligand 142769.doc-99·201021828 binding or signal transduction pathway, regulation of tumor cells Differentiate, alter tumor angiogenic factor distribution and / or apoptosis. Those skilled in the art will appreciate that antibodies can be used to specifically dry up and bind to immunogenic molecules, such as the immunogenic domain of the 58P1D12 sequence shown in Figure 1. Furthermore, it will be appreciated by those skilled in the art that antibodies are typically conjugated to a cellulolytic agent (see, e.g., Slevers et al, Bl. 93: 11 3678. 3 684 (June 1, 1999)). When a cytotoxic agent and/or a therapeutic agent is delivered directly to a cell (such as by binding it to an antibody specific for a molecule expressed by the cell (e.g., 5 8 p 1 d 12 )), the cytotoxic agent is Cells exert a known biological effect (ie, cytotoxicity). A variety of compositions and methods for killing cells using antibody-cytotoxic agent conjugates are known in the art. In the context of cancer, a typical method entails administering a biologically effective amount of a conjugate to a tumor-bearing animal comprising a selected cytotoxic agent and/or therapeutic agent linked to a crude agent (eg, an anti-58P1D12 antibody). The targeting agent binds to a label on the surface of the cell that binds to or localizes to the cell surface (e.g., 58P1D12). A typical embodiment is a method of delivering a cytotoxic agent and/or a therapeutic agent to a cell expressing 58P1D12, which comprises conjugated a cytotoxic agent to an antibody that immunospecifically binds to a 58P1D12 epitope and exposes the cell to an antibody-agent Joint. Another illustrative embodiment is a method of treating an individual suspected of having a metastatic cancer, the method comprising the step of parenterally administering a pharmaceutical composition comprising a therapeutically effective amount of an antibody to a cytotoxic agent, and / or a conjugate of a therapeutic agent. Cancer immunotherapy using an anti-58P1D12 antibody can be performed according to a variety of methods that have been successfully used in the treatment of other types of cancer, including, but not limited to, colon cancer (Arlen et al, 1998, Crit. Rev. Immunol. 1 8:133-138), multiple myeloma (Ozaki et al., 1 997, Blood 90: 3179-3186; Tsunenari et al., 1997, Blood 90: 2437-2444), gastric cancer (Kasprzyk et al., 1992, Cancer Res. 52: 2771-2776), B cell lymphoma (Funakoshi et al., 1996, J. Immunother. Emphasis Tumor Immunol. 19: 93-101), Leukemia (Zhong et al., 1996). , Leuk·Res. 20: 581-589), colorectal fistula cancer (Moun et al, 1994, Cancer Res. 54: 6160-6166; Velders et al, 1995, Cancer Res. 55: 4398-4403) and breast cancer ( Shepard et al., 1991, J. Clin. Immunol. 11:117-127). Some treatments include conjugated naked antibodies to toxins or radioisotopes, such as Y91 or I131, respectively, to an anti-CD20 antibody (eg, ZevalinTM, IDEC Pharmaceuticals Corp. or BexxarTM, Coulter Pharmaceuticals), while other methods include antibody and other treatments. Co-administered, such as Herceptin (trastuzu Mab) and paclitaxel (Genentech, Inc). The antibody can be conjugated to a therapeutic agent. For the treatment of ovarian cancer, for example, 58P1D12 antibody can be administered in combination with radiation, chemotherapy or hormonal resection. The antibody can also be conjugated to a toxin, such as a conjugated to calicheamicin (eg, MylotargTM 'Wyeth-Ayerst, Madison, NJ, a recombinant humanized IgG4 κ antibody conjugated to the anti-tumor antibiotic echinomycin) or with meiden Alcohol bonding (e.g., a taxane-based tumor activating prodrug TAP platform, ImmunoGen, Cambridge, MA; see also, e.g., U.S. Patent 5,416,064) or conjugated with Auristatin E (Nat 142769.doc-101 - 201021828
Biotechnol· 2003年7月;21 ⑺:778_84. (SeaUleBiotechnol· July 2003; 21 (7): 778_84. (SeaUle
Genetics)) 〇 雖然5 8 P1D12抗體療法可用於癌症之所有階段,但抗體 療法可尤其適用於晚期或轉移性癌症。用本發明之抗體療 法治療適用於已接受一或多輪化學療法之患者。或者,將 本發明之抗體療法與化學療法或放射療法組合以用於尚未 接觉化學療法治療之患者。此外,抗體療法容許使用低劑 量之伴隨化學療法’尤其對於不能很好对受化學治療劑之 毒性的患者。Fan等人(Cancer Res· 53:4637-4642,1993)、 Prewett專人(International J. 〇f 〇nco. 9:217-224 1996)及 Hancock 等人(Cancer Res. 51:4575-4580,1991)描述將各種 抗體與化學治療劑一同使用。 雖然58P1D12抗體療法可用於癌症之所有階段,但抗體 療法可尤其適用於晚期或轉移性癌症。用本發明之抗.體療 法治療適用於已接受一或多輪化學療法之患者。或者,將 本發明之抗體療法與化學療法或放射療法組合以用於尚未 接爻化學療法治療之患者。此外,抗體療法容許使用低劑 量之伴隨化學療法,尤其對於不能很好财受化學治療劑之 毒性的患者。 可評估癌症患者中5 8P1D12表現之存在及程度,較佳使 用腫瘤組織免疫組織化學評估、定量58P1D12成像或可靠 地表明58P1D12表現之存在及程度的其他技術。對腫瘤活 組織檢查或手術樣本之免疫組織化學分析較佳用於此目 的。腫瘤組織之免疫組織化學分析方法已於此項技術中熟 知。 142769.doc -102- 201021828 治療印巢癌及其他癌症之抗58P1D12單株抗體包括引發 針對腫瘤之強免疫反應的彼等抗體或具有直接細胞毒性的 彼等抗體。鑒於此,抗58P1D12單株抗體(MAb)可藉由補 體介導或抗體依賴細胞之細胞毒性(ADCC)機制誘發腫瘤 細胞溶解’該兩種機制均需要用於與補體蛋白質上之效應 細胞Fe受體位點相互作用的免疫球蛋白分子之完整以部 71此外’對腫瘤生長發揮直接生物效應之抗58P1D12 _ MAb可用於治療表現58piD12之癌症。細胞毒性MAb直接 作用之機制包括:抑制細胞生長;調節細胞分化;調節腫 瘤·^、生成因子分布;及誘導細胞凋亡。特定抗58P1D12 MAb發揮抗腫瘤作用之機制可使用此項技術中通常已知之 *平估細胞死亡的多種活體外檢定(諸如AdCc、ADMMC、 補體介導細胞溶解等)予以評估。 在有些患者中’使用鼠科動物或其他非人類單株抗體或 人類/小鼠嵌合MAb可誘導針對非人類抗體之中度免疫反 _應至強免疫反應。此會導致抗體經由循環清除及功效降 低。在最嚴重的情況下,此免疫反應會導致大量形成免疫 複合物,其可潛在引起腎衰竭。因此,本發明之治療方法 中使用的較佳單株抗體為完全人類或人源化且在患者中以 高親和性特異性結合標靶58P1D12抗原、但呈現低抗原性 或不呈現抗原性的單株抗體。 本發明之治療方法涵蓋投與單一抗58P1D12 MAb及投與 不同MAb(亦即58P1D12 MAb或結合另一蛋白質之Mab)之 組合或混合物。該等MAb混合物由於含有靶向不同抗原決 142769.doc •103- 201021828 定基之MAb、利用不同效應機制或將直接細胞毒性MAb與 依賴免疫效應功能之MAb組合而可具有某些優點。該等組 合形式之MAb可呈現協同治療作用。此外,58p1D12 MAb 可附隨其他治療形式投與,該等治療形式包括(但不限於) 多種化學治療劑及生物藥劑、雄激素阻斷劑、免疫調節劑 (例如IL-2、GM-CSF)、手術或放射。58piDi2 MAb可以其 「裸」形式或未接合形式投與,或可具有與其接合之治療 劑。 58P1D12 Mab調配物可經由能夠使抗體傳遞至腫瘤細胞 之任何途徑投與》投藥途徑包括(但不限於)靜脈内、腹膜 内、肌肉内、腫瘤内 '皮内及其類似途徑。治療通常包括 經由可接爻之投藥途徑(諸如靜脈内注射重複投與 58P1D12 Mab製劑,劑量通常在包括(但不限於)〇1、〇 2、 0.3 、 0.4 、 0·5 、 〇·6 、 〇·7 、 〇·8 、 〇 9 、 i 、 2 、 3 、 4、 5 、 6、 7、8、9、10、15、20或25 mg/kg體重之範圍内。一般而 言,每週10-1000 mg MAbi圍内之劑量有效且耐受性較 佳。 基於用赫赛>、丁(曲妥珠單抗(Trastuz_b))治療轉移性乳 癌之臨床經驗,MAb製劑之約4 mg/kg患者體重之靜脈内 初始負荷劑量、接著每週約2 mg/kg之靜脈内劑量代表— 種可接受的給藥方案。初始負荷劑量較佳以90分鐘或長於 90分鐘之輸注形式投與。定期維持劑量錢分鐘或長於μ 分鐘之輸㈣歧與,其_性條件為初始劑量得到很好 地财受。如熟習此項技術者所瞭解,在㈣情沉下,多種 142769.doc -104- 201021828 因素可影響理想給藥方案。該等因素包括例如所用MAb之 結合親和性及半衰期;患者中之58P1D12表現程度;循環 排出58P1D12抗原之程度;所要穩態抗體濃度;治療頻 率;及化學治療劑或其他藥劑與本發明之治療方法組合使 用的影響’以及特定患者之健康狀況。 視需要應評估患者之給定樣本中之58P1D12含量(例如循 環58P1D12抗原及/或58P1D12表現細胞之含量)以便有助於 判疋最有效的給樂方案等。该等評估亦可在整個療法中用 ® 於監測目的’且可與其他參數(例如膀胱癌治療中之尿細 胞學及/或免疫細胞檢定(ImmunoCyt)含量,或類似地,前 列腺癌治療中之血清PSA含量)之評估組合用於測定治療成 功。 抗遺傳型抗58P1D12抗體亦可作為針對表現58P1Di2相 關蛋白質之細胞誘導免疫反應的疫苗用於抗癌療法中。特 定而言’抗遺傳型抗體之產生已於此項技術中熟知;此方 法可容易地經調適以產生模擬58P1D12相關蛋白質上之抗 原決定基的抗遺傳型抗58P1D12抗體(參見例如Wagner等 人 ’ 1997, Hybridoma 16: 33-40 ; Foon等人,1995, J. Clin. Invest. 96:334-342 ; Herlyn等人,1996,Cancer Immunol. Immunother. 43:65_76)。該等抗遺傳型抗體可用於癌症疫 苗策略中。 本發明之一目的在於提供抑制或延緩表現58P1D12之腫 瘤細胞之生長的58P1D12 MAb。本發明之另一目的在於提 供使用該等58P1D12 MAb且尤其將該等58P1D12 MAb與其 I42769.doc -105- 201021828 他藥物或免疫主動療法組合而抑制血管生成及其他生物功 能且由此使哺乳動物(較佳人類)中之腫瘤生長減緩的方 法’該等其他藥物或免疫主動療法包括(但不限於): Avastin®(貝伐單抗(bevacizumab))、Sutent®(蘋果酸舒尼 替尼(sunitinib malate))、Nexavar®(甲苯續酸索拉菲尼 (Sorafinib tosylate))、Taxotere®(多西他賽(docetaxel))、 Sirolimus®(雷帕黴素(rapamycin)或其類似物)、 Paraplatin® (卡始(carobplatin))、介白素 _2(亦稱為 Proleukin®、IL-2或阿地白介素(Aldesleukin))或干擾素 α(干擾素-a-2a或干擾素-a-2b)及此項技術中已知可治療癌 症的其他藥物。 在一實施例中,當用5 8P1D12抗體連同化學治療劑或放 射或其組合一起治療腫瘤(包括人類腫瘤)時,存在協同作 用。換而s之’當與化學治療劑或放射或其組合組合時, 58P1D12抗體對腫瘤生長之抑制增強超過預期。協同作用 可呈現為’例如,與僅58P1D12抗體之治療預期相比或與 用5 8P1D12抗體及化學治療劑或放射治療之疊加效應相 比,組合治療對腫瘤生長的抑制更大。協同作用較佳可依 據癌症緩解得到證明’其中預期用裸581>1〇12抗體治療或 使用58P1D12抗體與化學治療劑或放射之疊加組合治療不 會緩解。 使用58P1D12抗體及化學療法或放射或兩者之組合抑制 腫瘤細胞生長的方法包含在開始化學療法或放射療法之 前、期間或之後及其任何組合(亦即,在開始化學療法及/ 142769.doc -106- 201021828 或放射療法之前及期間;之前及之後;期間及之後;或之 前、期間及之後)投與58P1D12抗體。舉例而言,58P1D12 抗體通常在開始放射療法及/或化學療法之前1日與60曰之 間、較佳3日與40日之間、更佳5日與12日之間投與。然 而,視治療方案及特定患者需要而定,可以提供最有效治 療且最終延長患者壽命的方式執行該方法。 化學治療劑之投與可以多種方式達成,包括藉由非經腸 及經腸途徑全身性投與。在一實施例中,58P1D12抗體及 ® 化學治療劑作為單獨分子投與。在另一實施例中,將 58P1D12抗體藉由例如接合方式與化學治療劑連接。(參見 標題為「經由使用58P1D12 MAb治療及診斷人類癌瘤之人 類臨床試驗」的實例)。化學治療劑或化學療法之特定實 例包括順銘、達卡巴嘻(dacarbazine ; DTIC)、更生黴素 (dactinomycin)、曱二氣二乙胺(mechlorethamine)(氮芥 (nitrogen mustard))、鏈佐星(streptozocin)、環填醯胺、卡 莫司汀(carmustine ; BCNU)、洛莫司汀(lomustine ; CCNU)、阿黴素(doxorubicin)(阿黴素(adriamycin))、道諾 黴素(daunorubicin)、丙卡巴肼(procarbazine)、絲裂徽素 (mitomycin)、阿糖胞苷(cytarabine)、依託泊苷 (etoposide)、甲胺嗓呤(methotrexate)、5-氟尿嘴咬(5-fluorouracil)、長春驗(vinblastine)、長春新驗 (vincristine)、博萊黴素(bleomycin)、太平洋紫杉醇 (paclitaxel)(紫杉醇(taxol))、多西他賽(docetaxel)(紫杉德 (taxotere))、阿地白介素、天門冬醯胺酶、白消安 142769.doc • 107- 201021828 (busulfan)、卡銘、克拉屈濱(cladribine)、達卡巴噃、氟尿 苦(floxuridine)、說達拉濱(fludarabine)、經基脲、異環磷 醢胺、干擾素α、亮丙立德(leuprolide)、甲地孕_ (megestrol)、 美法舍(melphalan)、疏嗓0令 (mereaptopurine)、普卡徽素(plicamycin)、米托坦 (mitotane)、培門冬酶(pegaspargase)、喷司他丁 (pentostatin)、娘泊漠烧(pipobroman)、普卡黴素、鏈佐 星、他莫昔芬(tamoxifen)、替尼泊苦(teniposide)、睪内S旨 (testolactone)、硫鳥 π票吟(thioguanine) 、 π塞替派 (thiotepa)、尿 D密咬氮芬(uracil mustard)、長春瑞賓 (vinorelbine)、苯丁酸氮芥(chlorambucil)、紫杉醇及其組 合0 與58P1D12 Mab組合使用之放射源可在所治療之患者外 部或内部。當放射源在患者外部時,此治療稱為體外放射 線治療(EBRT)。當放射源在患者内部時,此治療稱為近距 離放射療法(BT)。 上述治療方案可與其他癌症治療劑及/或方案進一步組 合,該等癌症治療劑及/或方案例如其他化學療法、癌症 疫苗、信號轉導抑制劑、適用於治療異常細胞生長或癌症 之藥劑、抗體(例如WO/2005/092380(Pfizer)中所述之抗 CTLA-4抗體)或藉由結合IGF-1R及細胞因子來抑制腫瘤生 長的其他配體。 當哺乳動物進行其他化學療法時,可使用上述化學治療 劑。此外,可使用生長因子抑制劑、生物反應調節劑、抗 142769.doc -108- 201021828 激素療法、選擇性雌激素受體調節劑(SERM)、血管生成 抑制劑及抗雄激素。舉例而言,可使用抗激素,例如抗雌 激素,諸如Nolvadex(他莫昔芬);或抗雄激素,諸如 Casodex(f-氰基-3-(4-氟苯磺醯基)-2-羥基-2-甲基-3'-(三氟 甲基)丙醯苯胺)。 在本發明之某些實施例中,可將上述方法與癌症疫苗組 合。有用疫苗可為(不限於)包含癌症相關抗原(例如 BAGE、癌胚抗原(CEA)、EBV、GAGE、gplOO(尤其包括 ® gpl00:209-217 及 gpl00:280-288)、HBV、HER-2/neu、 HPV、HCV、MAGE、乳腺球蛋白(mammaglobin)、MART· 1/Melan-A、黏蛋白-l(Mucin-l)、NY-ESO-1、蛋白酶-3、 PS A、RAGE、TRP-1、TRP-2、酷·胺酸酶(例如赂胺酸酶: 368-376)、WT-1)之彼等疫苗、基於GM-CSF DNA及細胞 之疫苗、樹突狀細胞疫苗、重組病毒(例如牛癌病毒)疫苗 及熱休克蛋白(HSP)疫苗。有用疫苗亦包括腫瘤疫苗,諸 如由黑色素瘤細胞形成之彼等疫苗,且可為自體或異體 翁 的。疫苗例如可基於肽、DNA或細胞。該等多種藥劑可加 以組合,以便可將尤其包含gplOO肽、酪胺酸酶及MART-1 之組合與抗體一起投與。 疫苗可在幹細胞移植之前或之後投與,且當化學療法為 療法之部分時,疫苗可在化學療法之前投與。在某些實施 例中,本發明之抗體亦可在化學療法之前投與。疫苗亦可 在幹細胞移植之後投與且在某些實施例中隨同抗體一起投 與。 142769.doc -109- 201021828 上述治療亦可聯合信號轉導抑制劑使用,諸如可抑制 EGFR(表皮生長因子受體)反應之藥劑,諸如EGFR抗體、 EGF抗體及EGFR抑制劑分子;VEGF(血管内皮生長因子) 抑制劑,諸如可抑制VEGF之VEGF受體及分子;及erbB2 受體抑制劑,諸如結合erbB2受體之有機分子或抗體。 EGFR抑制劑描述於例如WO 95/19970(1995年7月27日公 開)、WO 98/14451(1998 年 4 月 9 曰公開)、WO 98/02434 (1998年1月22日公開)及美國專利第5,747,498號(1998年5月 5曰頒布)中,且該等物質可如本文中所述用於本發明中。© EGFR抑制劑包括(但不限於)單株抗體ERBITUX (ImClone Systems Incorporated, New York, N.Y·)及 VECTIBIX (Amgen,Thousand Oaks, Calif.)、化合物 ZD-1839 (AstraZeneca) ' BIBX-1382 (Boehringer Ingelheim) ' MDX-447 (Medarex Inc., Annandale, New. Jersey)及 OLX-103 (Merck & Co., Whitehouse Station, N.J.) ' VRCTC-310 (Ventech Research)及 EGF 融合毒素(Seragen Inc·, Hopkinton, Mass.)。該等及其他EGFR抑制劑可用於本發明零 中〇 亦可將VEGF抑制劑(例如SU-5416及SU-6668 (Sugen Inc.,South San Francisco, Calif·))與抗體組合使用。VEGF 抑制劑描述於例如WO 99/24440 (1999年5月20日公開)、 PCT國際申請案PCT/IB99/00797 (1999年5月3曰申請)、WO 95/21 613(1995年 8月 17 日公開)、WO 99/61422( 1999年 12月 2曰公開)、美國專利第5,834,504號(1998年11月10曰頒 142769.doc •110- 201021828 布)、WO 98/503 56 (1998年11月12曰公開)、美國專利第 5,883,113號(1999年3月16曰頒布)、美國專利第5,886,020 號(1"9年3月23日頒布)、美國專利第5,792,783號(1998年8 月11日頒布)、WO 99/10349 (1999年3月4曰公開)、WO 97/32856 (1997年 9月 12 日公開)、WO 97/22596 (1997年 6 月 26 曰公開)、WO 98/54093 (1998 年 12 月 3 曰公開)、WO 98/02438 (1998年 1月 22 日公開)、WO 99/16755 (1999年 4 月 8曰公開)及WO 98/02437 (1998年1月22日公開)中。適用於 ® 本發明之某些特異性VEGF抑制劑之其他實例為IM862 (Cytran Inc.,Kirkland,Wash·); IMC-1C11 Imclone抗體及 安吉酶(angiozyme)(—種來自 Ribozyme (Boulder, Colo.)與 Chiron (Emeryville, Calif.)之合成核酶)。Genetics)) 5 Although 5 8 P1D12 antibody therapy can be used in all stages of cancer, antibody therapy is especially useful for advanced or metastatic cancer. Treatment with the antibody therapy of the invention is indicated for patients who have received one or more rounds of chemotherapy. Alternatively, the antibody therapy of the invention may be combined with chemotherapy or radiation therapy for patients who have not been treated with chemotherapy. In addition, antibody therapy allows the use of low doses of concomitant chemotherapy' especially for patients who are not well toxic to chemotherapeutic agents. Fan et al. (Cancer Res 53: 4637-4642, 1993), Prewett (International J. 〇f 〇nco. 9: 217-224 1996) and Hancock et al. (Cancer Res. 51:4575-4580, 1991) Description Use of various antibodies with chemotherapeutic agents. Although 58P1D12 antibody therapy can be used in all stages of cancer, antibody therapy may be particularly useful for advanced or metastatic cancer. The treatment with the anti-physiological treatment of the present invention is suitable for patients who have received one or more rounds of chemotherapy. Alternatively, the antibody therapy of the invention may be combined with chemotherapy or radiation therapy for patients who have not been treated with chemotherapy. In addition, antibody therapy allows the use of low doses of concomitant chemotherapy, especially in patients who are not well toxic to chemotherapeutic agents. The presence and extent of 58 P1D12 expression in cancer patients can be assessed, preferably using immunohistochemical evaluation of tumor tissue, quantification of 58P1D12 imaging, or other techniques that reliably demonstrate the presence and extent of 58P1D12 performance. Immunohistochemical analysis of tumor biopsy or surgical samples is preferred for this purpose. Immunohistochemical analysis methods for tumor tissues are well known in the art. 142769.doc -102- 201021828 Anti-58P1D12 monoclonal antibodies for the treatment of nested and other cancers include antibodies that elicit a strong immune response against tumors or antibodies that are directly cytotoxic. In view of this, the anti-58P1D12 monoclonal antibody (MAb) can induce tumor cell lysis by complement-mediated or antibody-dependent cell cytotoxicity (ADCC) mechanism. Both of these mechanisms are required for effector cell Fe on the complement protein. The integrity of the immunoglobulin molecule interacting with the body site is in addition to the '58P1D12 _ MAb', which has a direct biological effect on tumor growth, and can be used to treat cancers exhibiting 58 piD12. The direct mechanism of cytotoxic MAb includes: inhibition of cell growth; regulation of cell differentiation; regulation of tumors, production factor distribution; and induction of apoptosis. The mechanism by which a particular anti-58P1D12 MAb exerts an anti-tumor effect can be assessed using a variety of in vitro assays (such as AdCc, ADMMC, complement-mediated cytolysis, etc.) commonly known in the art to assess cell death. In some patients, the use of murine or other non-human monoclonal antibodies or human/mouse chimeric MAbs can induce a moderate immune response against non-human antibodies. This can result in antibody clearance and reduced efficacy. In the most severe cases, this immune response results in the formation of large amounts of immune complexes that can potentially cause kidney failure. Thus, a preferred monoclonal antibody for use in the methods of treatment of the present invention is a single human or humanized and specifically binds to the target 58P1D12 antigen with high affinity in a patient, but exhibits low antigenicity or does not exhibit antigenicity. Strain antibody. Therapeutic methods of the invention encompass the administration of a combination or mixture of a single anti-58P1D12 MAb and a different MAb (i.e., 58P1D12 MAb or a Mab that binds to another protein). Such MAb mixtures may have certain advantages due to the inclusion of MAbs that target different antigens, the use of different effector mechanisms, or the combination of direct cytotoxic MAbs with MAbs that are dependent on immune effector functions. These combined forms of MAb can exhibit a synergistic therapeutic effect. In addition, 58p1D12 MAb may be administered in conjunction with other therapeutic modalities including, but not limited to, various chemotherapeutic agents and biological agents, androgen blockers, immunomodulators (eg, IL-2, GM-CSF). , surgery or radiation. The 58 piDi2 MAb can be administered in its "naked" or unconjugated form, or can have a therapeutic agent associated therewith. The 58P1D12 Mab formulation can be administered via any route capable of delivering antibodies to tumor cells. The route of administration includes, but is not limited to, intravenous, intraperitoneal, intramuscular, intratumoral intradermal and the like. Treatment typically involves repeated administration of a 58P1D12 Mab formulation via an injectable route of administration, such as, but not limited to, 〇1, 〇2, 0.3, 0.4, 0·5, 〇·6, 〇 ·7, 〇·8, 〇9, i, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20 or 25 mg/kg body weight. In general, 10 per week The dose of -1000 mg MAbi is effective and well tolerated. Based on the clinical experience of treating Hereditary breast cancer with Hercynian and Trastuzumb (Trastuz_b), about 4 mg/kg of MAb preparation The intravenous initial loading dose of the patient's body weight, followed by an intravenous dose of about 2 mg/kg per week, represents an acceptable dosage regimen. The initial loading dose is preferably administered as an infusion of 90 minutes or longer than 90 minutes. Maintain the dose of money for a minute or longer than the μ minute (four), and the _ condition is that the initial dose is well received. As is familiar to those skilled in the art, in the case of (4), a variety of 142769.doc -104- 201021828 Factors can affect the ideal dosing regimen. These factors include, for example, the MAb used. Affinity and half-life; degree of 58P1D12 expression in patients; degree of circulating 58P1D12 antigen; desired steady-state antibody concentration; frequency of treatment; and effects of combination of chemotherapeutic or other agents with the therapeutic methods of the invention' and specific patients Health status. The amount of 58P1D12 in a given sample of the patient (eg, the amount of circulating 58P1D12 antigen and/or 58P1D12 expressing cells) should be assessed as needed to help determine the most effective regimen, etc. Use for monitoring purposes throughout the therapy and with other parameters (eg, urine cytology and/or immune cell assay (ImmunoCyt) levels in bladder cancer treatment, or similarly, serum PSA levels in prostate cancer treatment) The evaluation combination is used to determine the success of the treatment. The anti-genetic anti-58P1D12 antibody can also be used as a vaccine against the cell-induced immune response of the 58P1Di2-related protein for anti-cancer therapy. In particular, the production of anti-genetic antibodies has been Well known in the art; this method can be readily adapted to produce analog 58P1D12 related proteins The original anti-genetic anti-58P1D12 antibody (see, for example, Wagner et al. 1997, Hybridoma 16: 33-40; Foon et al, 1995, J. Clin. Invest. 96: 334-342; Herlyn et al, 1996, Cancer Immunol. Immunother. 43:65_76). Such anti-genetic antibodies can be used in cancer vaccine strategies. It is an object of the present invention to provide a 58P1D12 MAb which inhibits or delays the growth of tumor cells expressing 58P1D12. Another object of the present invention is to provide for the use of such 58P1D12 MAbs and, in particular, the 58P1D12 MAbs in combination with their I42769.doc-105-201021828 other drug or immunological therapies to inhibit angiogenesis and other biological functions and thereby cause mammals ( Methods for slowing tumor growth in better humans' These other drugs or immunological therapies include (but are not limited to): Avastin® (bevacizumab), Sutent® (sunitinib) Malate)), Nexavar® (Sorafinib tosylate), Taxotere® (docetaxel), Sirolimus® (rapamycin or its analogues), Paraplatin® (carobplatin), interleukin-2 (also known as Proleukin®, IL-2 or Aldesleukin) or interferon alpha (interferon-a-2a or interferon-a-2b) Other drugs known in the art to treat cancer. In one embodiment, there is a synergistic effect when treating tumors, including human tumors, with a 58P1D12 antibody in combination with a chemotherapeutic agent or radiation or a combination thereof. In other words, when combined with a chemotherapeutic agent or radiation or a combination thereof, the inhibition of tumor growth by the 58P1D12 antibody is more than expected. Synergism can be presented as & e.g., combination therapy has greater inhibition of tumor growth than the therapeutic expectation of only the 58P1D12 antibody or compared to the additive effect of the 58P1D12 antibody and chemotherapeutic agent or radiation therapy. The synergistic effect is preferably demonstrated by cancer remission. The treatment with naked 581 > 1〇12 antibody or the combination of 58P1D12 antibody and chemotherapeutic agent or radiation is not alleviated. A method of inhibiting tumor cell growth using a 58P1D12 antibody and chemotherapy or radiation, or a combination of both, is included before, during or after the initiation of chemotherapy or radiation therapy, and any combination thereof (ie, at the beginning of chemotherapy and / 142769.doc - 106-201021828 or before and during radiotherapy; before and after; during and after; or before, during and after) 58P1D12 antibody. For example, the 58P1D12 antibody is typically administered between 1 and 60 days, preferably between 3 and 40 days, and more preferably between 5 and 12 days prior to initiation of radiation therapy and/or chemotherapy. However, depending on the treatment regimen and the needs of the particular patient, the method can be performed in a manner that provides the most effective treatment and ultimately extends the life of the patient. Administration of chemotherapeutic agents can be accomplished in a variety of ways, including systemic administration via parenteral and enteral routes. In one embodiment, the 58P1D12 antibody and the ® chemotherapeutic agent are administered as separate molecules. In another embodiment, the 58P1D12 antibody is linked to the chemotherapeutic agent by, for example, bonding. (See the example entitled Human Clinical Trial for Treatment and Diagnosis of Human Carcinoma via the Use of 58P1D12 MAb). Specific examples of chemotherapeutic agents or chemotherapy include shunming, dacarbazine (DTIC), dactinomycin, mechlorethamine (nitrogen mustard), and chain stellate (streptozocin), cyclopamine, carmustine (BCNU), lomustine (CCNU), doxorubicin (adriamycin), daunorubicin ), procarbazine, mitomycin, cytarabine, etoposide, methotrexate, 5-fluorourine ), vinblastine, vincristine, bleomycin, paclitaxel (taxol), docetaxel (taxotere) , aldileukin, aspartate, aspartate, busulfan 142769.doc • 107- 201021828 (busulfan), kaming, cladribine, dakarta, floxuridine, darabine (fludarabine), transurea urea, isocyclic phosphoniumamine, dry Prime alpha, leuprolide, megestrol, melphalan, mereaptopurine, plicamycin, mitotane, culture Pegaspargase, pentostatin, pipobroman, pucamycin, streptozin, tamoxifen, teniposide, sputum S (testolactone), thioguanine thioguanine, thiotepa, uracil mustard, vinorelbine, chlorambucil, The radioactive source used in combination with paclitaxel and its combination 0 and 58P1D12 Mab can be external or internal to the patient being treated. When the source of radiation is outside the patient, this treatment is called extracorporeal radiation therapy (EBRT). When the source is inside the patient, this treatment is called brachytherapy (BT). The above treatment regimens may be further combined with other cancer therapeutics and/or regimens, such as other chemotherapy, cancer vaccines, signal transduction inhibitors, agents useful for treating abnormal cell growth or cancer, Antibodies (such as the anti-CTLA-4 antibodies described in WO/2005/092380 (Pfizer)) or other ligands that inhibit tumor growth by binding to IGF-IR and cytokines. The above chemotherapeutic agents can be used when the mammal is subjected to other chemotherapy. In addition, growth factor inhibitors, biological response modifiers, anti- 142769.doc-108-201021828 hormone therapy, selective estrogen receptor modulator (SERM), angiogenesis inhibitors, and antiandrogens can be used. For example, an anti-hormone such as an anti-estrogen such as Nolvadex (tamoxifen) or an anti-androgen such as Casodex (f-cyano-3-(4-fluorophenylsulfonyl)-2- can be used. Hydroxy-2-methyl-3'-(trifluoromethyl)propananilide). In certain embodiments of the invention, the above methods can be combined with a cancer vaccine. Useful vaccines can be, without limitation, including cancer-associated antigens (eg, BAGE, carcinoembryonic antigen (CEA), EBV, GAGE, gplOO (especially including ® gpl00:209-217 and gpl00:280-288), HBV, HER-2 /neu, HPV, HCV, MAGE, mammaglobin, MART·1/Melan-A, Mucin-1, NY-ESO-1, Protease-3, PS A, RAGE, TRP -1, TRP-2, cool aminase (eg, citrate: 368-376), WT-1), vaccines based on GM-CSF DNA and cells, dendritic cell vaccine, recombination Virus (eg bovine cancer virus) vaccine and heat shock protein (HSP) vaccine. Useful vaccines also include tumor vaccines, such as those formed by melanoma cells, and may be autologous or allogeneic. The vaccine can be based, for example, on peptides, DNA or cells. The plurality of agents may be combined so that a combination comprising, inter alia, gplOO peptide, tyrosinase and MART-1 can be administered together with the antibody. The vaccine can be administered before or after stem cell transplantation, and when chemotherapy is part of the therapy, the vaccine can be administered prior to chemotherapy. In certain embodiments, the antibodies of the invention may also be administered prior to chemotherapy. Vaccines can also be administered after stem cell transplantation and, in certain embodiments, with antibodies. 142769.doc -109- 201021828 The above treatments may also be used in combination with signal transduction inhibitors, such as agents that inhibit EGFR (epidermal growth factor receptor) responses, such as EGFR antibodies, EGF antibodies, and EGFR inhibitor molecules; VEGF (vascular endothelium) Growth factor) inhibitors, such as VEGF receptors and molecules that inhibit VEGF; and erbB2 receptor inhibitors, such as organic molecules or antibodies that bind to the erbB2 receptor. EGFR inhibitors are described, for example, in WO 95/19970 (published July 27, 1995), WO 98/14451 (published Apr. 9, 1998), WO 98/02434 (published Jan. 22, 1998), and U.S. patents. No. 5,747,498 (issued May 5, 1998), and the same may be used in the present invention as described herein. © EGFR inhibitors include, but are not limited to, monoclonal antibodies ERBITUX (ImClone Systems Incorporated, New York, NY) and VECTIBIX (Amgen, Thousand Oaks, Calif.), compound ZD-1839 (AstraZeneca) 'BIBX-1382 (Boehringer) Ingelheim) 'MDX-447 (Medarex Inc., Annandale, New. Jersey) and OLX-103 (Merck & Co., Whitehouse Station, NJ) 'VRCTC-310 (Ventech Research) and EGF fusion toxin (Seragen Inc., Hopkinton, Mass.). These and other EGFR inhibitors can be used in the present invention. VEGF inhibitors (e.g., SU-5416 and SU-6668 (Sugen Inc., South San Francisco, Calif.)) can also be used in combination with antibodies. VEGF inhibitors are described, for example, in WO 99/24440 (published May 20, 1999), PCT International Application PCT/IB99/00797 (filed May 3, 1999), WO 95/21 613 (August 17, 1995) Japanese Open), WO 99/61422 (published December 2, 1999), US Patent No. 5,834,504 (November 10, 1998, 142, 769. doc • 110-201021828), WO 98/503 56 (1998) US Patent No. 5,883,113 (issued March 16, 1999), US Patent No. 5,886,020 (1" issued on March 23, 9), US Patent No. 5,792,783 (August 11, 1998) Promulgated), WO 99/10349 (published March 4, 1999), WO 97/32856 (published on September 12, 1997), WO 97/22596 (published on June 26, 1997), WO 98/54093 ( Published on December 3, 1998, WO 98/02438 (published on January 22, 1998), WO 99/16755 (published on April 8, 1999), and WO 98/02437 (published on January 22, 1998) in. Other examples of certain specific VEGF inhibitors useful in the present invention are IM862 (Cytran Inc., Kirkland, Wash.); IMC-1C11 Imclone antibody and angiozyme (aniozyme) (from species Ribozyme (Boulder, Colo.) ) Synthetic ribozyme with Chiron (Emeryville, Calif.).
ErbB2 受體抑制劑(諸如 GW-282974 (Glaxo Wellcome)及 單株抗體 AR-209 (Aronex Pharmaceuticals Inc.,The Woodlands, Tex·)及2B-1 (Chiron))此外可與例如以下專利 中所指明之抗體組合:WO 98/02434 (1998年1月22曰公 開)、WO 99/35146 (1999年 7 月 15 日公開)、WO 99/35132 (1999 年 7 月 15 日公開)、WO 98/02437 (1998 年 1 月 22 曰公 開)、WO 97/13 760 (1997 年 4 月 17 日公開)、WO 95/19970 (1995年7月27日公開)、美國專利第5,587,458號(1996年12 月24曰頒布)及美國專利第5,877,305號(1999年3月2曰頒 布)。適用於本發明之ErbB2受體抑制劑亦描述於 EP1029853 (2000 年 8 月 23 日公開)及 WO 00/44728 (2000年 8 月3日公開)中。描述於上述PCT申請案、美國專利及美國 142769.doc 201021828 臨時申請案中的erbB2受體抑制劑化合物及物質以及抑制 erbB2受體的其他化合物及物質可聯合本發明之抗體一起 使用。 亦可將本發明之治療方案與藉由結合IGF-1R(胰島素樣 生長因子1受體)來抑制腫瘤生長的抗體或其他配體組合。 可用於本發明的特異性抗IGF-1R抗體包括PCT申請案 PCT/US01/51113(2001 年 12 月 20 日申請,且作為 WO 02/053596公開)中所述的彼等抗體。 可將本文中所述之治療方案與抗血管生成劑(諸如MMP-2(基質-金屬蛋白酶2)抑制劑、MMP-9(基質-金屬蛋白酶9) 抑制劑及COX-II(環加氧酶II)抑制劑)組合,且可連同抗體 一起用於本發明之方法中。有用COX-II抑制劑之實例包括 CELEBREX(塞利昔布(celecoxib))、伐地昔布(valdecoxib) 及羅非昔布(rofecoxib)。 X.C.)作為細胞免疫反應之標靶之58P1D12 含有免疫原性有效量之一或多種如本文中所述之HL A結 合肽的疫苗及製備該等疫苗之方法為本發明之其他實施 例。此外,本發明之疫苗涵蓋一或多種所主張之肽之組合 物。肽可單獨存在於疫苗中。或者,肽可以包含相同肽之 多個複本的均聚物形式或以各種肽之異聚物形式存在。聚 合物之優點在於:免疫反應增強;及,若使用不同的肽抗 原決定基組成聚合物,則另外能夠誘導與免疫反應所針對 之病原有機體或腫瘤相關肽之不同抗原決定子反應的抗體 及/或CTL。組合物可為抗原之天然存在區域或可以例如重 142769.doc • 112· 201021828 組方式或藉由化學合成法製備。 可用於本發明之疫苗的載體已於此項技術中熟知,且包 括例如甲狀腺球蛋白、白蛋白(諸如人血清白蛋白)、破傷 風類毒素、聚胺基酸(諸如聚L_離胺酸、聚L_麵胺酸)、流 感、B型肝炎病毒核心蛋白質及其類似載體。疫苗可含有 生理上可耐受(亦即可接受)之稀釋冑,諸如水或鹽水,較 佳為磷酸鹽緩衝鹽水。疫苗通常亦包括佐劑。諸如不完全 *氏佐劑、磷酸紹、氫氧化紹或馨之佐劑為此項技術中熟 知之物質之實例。此外,如本文中所揭示,可藉由將本發 明之肽與脂質接合(諸如三棕搁醯基_s_甘油基半胱胺醯基 絲胺醯基-絲胺酸(PASS))來致敏CTL反應。此外,已發現 佐劑(諸如含有胞嘧啶-硫代磷酸酯_鳥嘌呤(CpG)之合成募 核苷酸)可使CTL反應增強1〇倍至ι〇0倍(參見例如Davila&ErbB2 receptor inhibitors such as GW-282974 (Glaxo Wellcome) and monoclonal antibodies AR-209 (Aronex Pharmaceuticals Inc., The Woodlands, Tex.) and 2B-1 (Chiron) can additionally be specified, for example, in the following patents. Antibody combinations: WO 98/02434 (published January 22, 1998), WO 99/35146 (published July 15, 1999), WO 99/35132 (published July 15, 1999), WO 98/02437 (published on January 22, 1998), WO 97/13 760 (published on April 17, 1997), WO 95/19970 (published on July 27, 1995), and US Patent No. 5,587,458 (December 24, 1996)曰 promulgated) and US Patent No. 5,877,305 (issued March 2, 1999). ErbB2 receptor inhibitors suitable for use in the present invention are also described in EP1029853 (published on Aug. 23, 2000) and WO 00/44728 (published on Aug. 3, 2000). The erbB2 receptor inhibitor compounds and substances described in the above-mentioned PCT application, U.S. Patent, and U.S. Patent No. 142, 769. Therapeutic regimens of the invention may also be combined with antibodies or other ligands that inhibit tumor growth by binding to IGF-IR (insulin-like growth factor 1 receptor). The specific anti-IGF-1R antibodies that can be used in the present invention include those described in PCT Application No. PCT/US01/51113, filed on Dec. 20, 2001, and the disclosure of WO 02/053596. Therapeutic regimens described herein can be combined with anti-angiogenic agents (such as MMP-2 (matrix-metalloproteinase 2) inhibitors, MMP-9 (matrix-metalloproteinase 9) inhibitors, and COX-II (cyclooxygenase). II) Inhibitors) are combined and can be used in conjunction with antibodies in the methods of the invention. Examples of useful COX-II inhibitors include CELEBREX (celecoxib), valdecoxib, and rofecoxib. X.C.) 58P1D12 as a target for cellular immune responses Vaccines containing one or more immunogenic effective amounts of HL A binding peptides as described herein and methods of preparing such vaccines are other embodiments of the invention. Furthermore, the vaccine of the invention encompasses a composition of one or more of the claimed peptides. The peptide can be present in the vaccine alone. Alternatively, the peptide may comprise a homopolymer form of multiple copies of the same peptide or be present as a heteropolymer of various peptides. The advantage of the polymer is that the immune response is enhanced; and, if different peptide epitope-constituting polymers are used, it is additionally capable of inducing antibodies that react with different antigenic determinants of the pathogenic organism or tumor-related peptide to which the immune response is directed and/or Or CTL. The composition may be a naturally occurring region of the antigen or may be prepared, for example, by the method of group 142769.doc • 112·201021828 or by chemical synthesis. Vectors useful in the vaccines of the invention are well known in the art and include, for example, thyroglobulin, albumin (such as human serum albumin), tetanus toxoid, polyamino acids (such as poly-L-lysine, Poly-L- faceamine), influenza, hepatitis B virus core protein and the like. The vaccine may contain physiologically tolerable (i.e., acceptable) dilutions such as water or saline, preferably phosphate buffered saline. Vaccines usually also include adjuvants. Adjuvants such as incomplete * adjuvant, bismuth phosphate, chlorinated or citric acid are examples of materials well known in the art. Furthermore, as disclosed herein, by binding the peptide of the present invention to a lipid such as trisylsulfonyl-s-glycerylcysteine-mercaptosylamine-serine (PASS) Sensitive CTL reaction. In addition, adjuvants such as synthetic nucleotides containing cytosine-phosphorothioate-guanine (CpG) have been found to increase the CTL response by a factor of 1 to ι〇0 (see, for example, Davila &
Celis,J. Immunol. 165:539-547 (2000))。 本發明之肽組合物經由注射、喷霧劑、經口、經皮、經 _ 黏膜、胸膜内、鞠内或其他適當途徑免疫之後,宿主之免 疫系統藉由產生對所要抗原特異之大量CTL及/或HTL而對 疫苗作出反應。因此’宿主對於以後形成表現或過度表現 58P1D12抗原之細胞變得至少部分免疫,或當抗原與腫瘤 相關時可獲得至少一定治療益處。 在有些實施例中,需要將I類肽組分與誘導或促成針對 標靶抗原之中和抗體及/或輔助T細胞反應的組分組合。該 組合物之一較佳實施例包含本發明之Ϊ類及Η類抗原決定 基。該組合物之一替代實施例包含本發明之I類及/或II類 142769.doc •113· 201021828 抗原決定基,以及交又反應性HTL抗原決定基,諸如 PADREtm (Epimmune,San Dieg〇, CA)分子(例如美國專利 第5,736,142號中所述)。 本發明之疫苗亦可包括抗原呈現細胞(Apc)如樹突狀細 胞(DC)作為呈現本發明之肽的載體。疫苗組合物可在樹突 狀細胞移動及收穫之後在活體外產生,其中樹突狀細胞之 裝載在活體外進行。舉例而言,將樹突狀細胞用例如本發 明之小基因轉染或用肽脈衝標記。接著可將樹突狀細胞投 與患者以在活體内誘發免疫反應。亦可將疫苗組合物(基 於DNA或基於肽)之活體内投藥與樹突狀細胞移動組合, 其中樹突狀細胞之襄載在活體内進行。 幸又佳地,當選擇抗原決定基之陣列以便納入用於疫苗之 多抗原決疋基組合物中時,或選擇欲納入疫苗中及/或欲 由核酸(諸如小基因)編碼之離散抗原決定基時,使用以下 原則。以下各原則較佳加以權衡以便作出選擇。欲併入給 定疫苗組合物中之多個抗原決定基可為(但不一定為)抗原 /夬疋基所來源之天然抗原中的她連序列。 1 ·)選擇在投藥後模擬已觀測到之與腫瘤消除相關之免疫 反應的抗原決定基。對於1類11]^八,此包括3_4個來自至少 種遽瘤相關彳/u原(TAA)的抗原決定基。對於η類hla, 使用類似的基本原則;再次,3_4個抗原決定基選自至少 一種 TAA(參見例如 Rosenberg等人 ’ science 278: 1447-1450)。可將來自一種TAA之抗原決定基與來自一或多種 其他ΤΑ A之抗原決定基組合使用,以製備乾向具有頻繁受 142769.doc •114- 201021828 表現之TAA之不同表現模式的腫瘤的疫苗。 2·)選擇所建立之必需結合親和性與免疫原性相關的抗原 決定基:對於I類HLA,IC5Q為500 ηΜ或小於500 ηΜ,通 常為200 ηΜ或小於200 ηΜ ;且對於Π類HLA,冗切為1〇〇〇 ηΜ或小於1〇〇〇 ηΜ。 3.)選擇具有超基元之足夠肽或具有等位基因特異性基元 之足夠肽陣列以得到寬廣的群體覆蓋率。舉例而言,較佳 ❹具有至少80%的群體覆蓋率。可使用蒙特卡羅分析法 (Monte Carlo anaiysis)(此項技術中已知的統計學評估法) 評估群體覆蓋率之寬度或冗餘度。 4·)當自癌症相關抗原中選擇抗原決定基時,由於患者可 月b已形成針對天然抗原決定基之耐受性,因此選擇類似物 通常有用。 5·)特別相關的抗原決定基稱為「巢式抗原決定基」。巢 式抗原決定基存在於給定肽序列中之至少兩個抗原決定基 ❿重疊之處。巢式肽序列可包含B細胞、1類^1匕八及/氣玎類 HLA抗原決定基。當提供巢式抗原決定基時,一般目的在 於提供每序列最大數目的抗原決定基。因此,一態樣係避 免提供比肽中之胺基末端抗原決定基之胺基末端及羧基末 鳊抗原决定基之羧基末端更長的肽。當提供多重抗原決定 基序列(諸如包含巢式抗原決定基之序列)時,為確保序列 不具有病理性或其他有害生物學特性而篩檢序列通常為重 要的。 6.)若產生多抗原決定基蛋白質或產生小基因,則目的在 142769.doc -115- 201021828 於產生涵蓋所需之抗原決定基的最小肽。此原則與選擇包 含巢式抗原決定基之肽時所利用的原則若不相同則相似。 然而’對於人工多抗原決定基肽’將尺寸最小化目的與整 合多抗原決定基蛋白質中之抗原決定基之間的任何間隔序 列的需要加以權衡。例如可將間隔胺基酸殘基引入,以避 免接合性抗原決定基(可由免疫系統識別、不存在標靶抗 原中且僅藉由將抗原決定基人工併接所產生之抗原決定 基),或促進抗原決定基之間分裂且由此增強抗原決定基 呈現。接合性抗原決定基由於接受者可產生針對彼非天然◎ 抗原決定基之免疫反應而通常得以避免。作為「優勢抗原 決疋基」之接合性抗原決定基特別值得關注。優勢抗原決 定基會引起積極反應,以致減弱或抑制對其他抗原決定基 之免疫反應。 7.)若相同標靶蛋白質存在多種變異體之序列,則亦可基 於其保守性選擇潛在的肽抗原決定基。舉例而言,保守性 標準可定義為’ I類HLA結合肽之完整序列或„類結合肽之 完整9-贿核心可在指定百分比之針對特異性蛋白質抗原© 所評估之序列令保守。 X - C · 1,小基因疫苗 可利用容許多個抗原決定基同時傳遞的多種不同方法。 編碼本發明之肽的核酸為本發明之一特別有用的實施例。 用於納入小基因中之抗原決定基較佳根據先前章節中所述 之準則加以選擇。投與編碼本發明之肽之核酸的較佳方法 使用編碼包含一或多個本發明之抗原決定基之肽的小基因 142769.doc -116- 201021828 構築體。 多重抗原決定基小基因之用途描述於下文及以下文獻 中:Ishioka等人,J. Immunol. 162:3915-3925,1999 ; An, L.及 Whitton,J. L.,J. Virol. 71:2292,1997 ; Thomson,S. A.等人,J· Immunol. 157:822,1996 ; Whitton,J. L.等人, J. Virol· 67:348,1993 ; Hanke, R.等人,Vaccine 16:426, 1998。舉例而言,編碼源於58P1D12之具有超基元及/或基 元之抗原決定基(來自58P1D12的PADRETM通用輔助T細胞 ® 抗原決定基或多個htl抗原決定基)的多抗原決定基DNA 質體及内質網位移信號序列可經工程改造。疫苗亦可包含 自其他TAA獲得之抗原決定基。 多重抗原決定基小基因之免疫原性可於轉殖基因小鼠中 證明’以評估針對所測試之抗原決定基之Ctl誘導反應的 大小。此外’ DNA編碼抗原決定基在活體内之免疫原性可 與特異性CTL品系針對經〇]^人質體轉染之標靶細胞的活體 ❷外反應相關。因此,該等實驗可證明1):小基因用於產生 CTL反應;及2)所誘導之CTL識別表現所編碼之抗原決定 基的細胞。 舉例而言’為產生編碼供人類細胞中表現之所選抗原決 定基(小基因)的DNA序列’可將抗原決定基之胺基酸序列 逆轉澤。可使用人類密碼子用法表指導各胺基酸之密碼子 選擇。該等編碼抗原決定基之DNA序列可直接接合,以便 在轉#時產生連續的多肽序列。為優化表現及/或免疫原 性,可將其他元件併入小基因設計中。可逆轉譯且納入小 142769.doc -117- 201021828 基因序列中之胺基酸序列之實例包括:〗類HLA抗原決定 基、II類HLA抗原決定基、抗體抗原決定基、泛素化信號 序列及/或内質網靶向信號。此外,CTL及HTL抗原決定基 之HLA呈現可藉由包括鄰接於CTL或HTL抗原決定基之合 成側接序列(例如聚丙胺酸)或天然存在之側接序列而得到 改良;包含抗原決定基之該等較大肽屬於本發明之範疇 内。 可藉由將編碼小基因之正股與負股的寡核苷酸組裝來使 小基因序列轉化為DNA。重疊募核苷酸(30-1〇〇個鹼基長) 可使用熟知技術在適當條件下合成、鱗酸化、純化及黏 接。寡核苷酸之端部可使用例如T4 DNA連接酶連接。接 著可將編碼抗原決定基多肽之此合成小基因選殖入所要表 現载體中。 載體中較佳包括熟習此項技術者所熟知的標準調節序列 以確保在標靶細胞中之表現。需要若干載體元件:具有用 於小基因插入之下游選殖位點的啟動子;有效終止轉錄之 聚腺苷酸化信號;大腸桿菌複製起點;及大腸桿菌可選標 誌(例如胺节西林(ampicillin)或卡那黴素(kanamycin)抗 性)。可將多種啟動子(例如人細胞巨大病毒(hCMV)啟動 子)用於此目的。有關其他適當啟動子序列,可參見例如 美國專利第5,580,859號及第5,589,466號。 可能需要其他載體修飾以優化小基因表現及免疫原性。 在有些情況下’有效基因表現需要内含子,且可將一或多 個合成或天然存在之内含子併入小基因之經轉錄區域内。 142769.doc -118- 201021828 亦可考3:將mRNA穩定化序列及複製序列納人哺乳動物細 胞中以便增強小基因表現。 表現載體-經選定,便將小基因選殖人啟動子之多酶切 點接頭(P〇lylinker)區下游中。將此質體轉型入適當大腸桿 菌菌株内’且使用標準技術製備DNA<>使用限制性酶切圖 譜(restriction mapping)及DNA序列分析法證明小基因之取 向及DNA序列以及載體中所包括之所有其他元件。含有適 當質體的細菌細胞可作為主細胞庫及工作細胞庫儲存。 此外’免疫刺激性序列(158或CpG)似乎在DNA疫苗之免 疫原性中起作用。除小基因編碼序列外,需要時,該等序 列可包括於載體中以增強免疫原性。 在有些實施例中,可使用雙順反子表現載體,其容許產 生經小基因編碼之抗原決定基與第二蛋白質(為增強或降 低免疫原性而納入)。若共表現則可有利地增強免疫反應 之蛋白質或多肽之實例包括細胞因子(例如IL-2、IL-12、 GM-CSF)、細胞因子誘導分子(例如LelF)、共刺激性分子 或針對HTL反應之pan-DR結合蛋白(PADRE™, Epimmune, San Diego, C A)。輔助(HTL)抗原決定基可與胞内靶向信號 連接且與所表現之CTL抗原決定基分開表現;此容許將 HTL抗原決定基導向不同於CTL抗原決定基之細胞代謝區 的細胞代謝區。需要時,此可更有效地促進HTL抗原決定 基進入II類HLA途徑,從而改良HTL誘導。與HTL或CTL誘 導相比,在某些疾病中,藉由免疫抑制分子(例如TGF-β) 之共表現來特異性減少免疫反應可為有利的。 142769.doc •119· 201021828 治療量之質體DNA例如可藉由在大腸桿菌中醱酵、接著 純化來製備。使用來自工作細胞庫之等分試樣接種生長培 養基,且根據熟洳技術在搖動燒瓶中或生物反應器中生長 至飽和。質體DNA可使用標準生物分離技術(諸如 QIAGEN,Inc. (Valencia, California)戶斤供應之固相陰離子 交換樹脂)純化。需要時,可使用凝膠電泳或其他方法將 超螺旋DNA與開環形式及線性形式分離。 可製備經純化之質體DNA以便使用多種調配物注射。其 中最簡單者為烀凍乾DNA復水於無菌磷酸鹽緩衝鹽水 (PBS)中。此方法(稱為「裸DNA」)目前在臨床試驗中用於 肌肉内(IM)投藥。為使小基因DNA疫苗之免疫治療作用最 大化,可能需要調配經純化之質體DNA的替代方法。多種 方法已有描述,且有新技術可供使用。亦可將陽離子脂 質、糖脂及融合脂質體用於調配物中(參見例如,如WO 93/24640 ; Mannino & Gould-Fogerite, BioTechniques 6(7): 682 (1988);美國專利第 5,279,833 號;WO 91/06309 ;及 Feigner等人,Proc. Nat’l Acad. Sci. USA 84:7413 (1987)中 所述)。此外,紇稱為保護性、相互作用、不凝聚化合物 (PINC)之肽及化哈物亦可與經純化之質體DNA複合以影響 變數,諸如穩定牲、肌肉内分散或至特定器官或細胞類型 之傳遞。 標乾細胞致敏可用作經小基因編碼之C TL抗原決定基之 表現及I類HLA呈現的功能性檢定。舉例而言,將質體 DNA引入適於用作標準CTL鉻釋放檢定之標靶的哺乳動物 142769.doc -120- 201021828 細胞株内。所用轉染方法視最終調配物而定。電穿孔法可 用於「裸」DNA,而陽離子脂質容許活體外直接轉染。可 將表現綠螢光蛋白質(GFP)之質體共轉染以容許使用螢光 活化細胞分選法(FACS)將經轉染之細胞富集。接著將該等 細胞用絡-51(51Cr)標記且用作抗原決定基特異性CTL品系 的標乾細胞’依據5 Yr釋放率彳貞測之細胞溶解表明經小基 因編碼之CTL抗原決定基之產生與hlA呈現。HTL抗原決 定基之表現可使用評估HTL活性之檢定法以類似方式評 ®估。 活體内免疫原性為對小基因DNA調配物進行功能測試的 第二種方法。將表現適當人類HLA蛋白質之轉殖基因小鼠 用DNA產物免疫。投藥劑量及途徑視調配物而定(例如, 對於PBS中之DNA,為肌肉内(iM);對於與脂質複合之 DNA ’為腹膜内(i.p.乃。免疫之後第以日,收穫脾細胞, 且在編碼所測試之各抗原決定基的肽存在下再刺激一週。 ❿爾後,使用標準技術對CTL效應細胞執行檢定以評估裝載 肽、經〇1*標§己之標乾細胞的細胞溶解。由載有肽抗原決 疋基(對應於經小基因編碼之抗原決定基)之HLA致敏的標 靶細胞溶解’證明活體内誘導CTL之DNA疫苗功能。以類 似方式證明HTL抗原決定基在轉殖基因小鼠中之免疫原 性。 或者’可使用如例如美國專利第5,204,253號中所述之彈 道傳遞法投與核酸。使用此技術投與僅包含DNA之顆粒。 在另—替代實施例令,可使DNA黏附於顆粒(諸如金顆粒) 142769.doc -121- 201021828 上。 亦可使用此項技術中熟知衿其他細菌或病毒傳遞系統傳 遞小基因,例如可將編碼本發明之抗原決定基的表現構築 體併入諸如牛痘之病毒載體_。 X.C.2. CTL肽與輔助肋^之組合 包3本發明之CTL肽的疫兹組合物可經修飾(例如經模 擬)以提供所要屬性,諸如絶改良之血清半衰期、經擴大 之群體覆蓋率或經增強之免瘦原性。 舉例而言,可藉由將肽與啥有至少一個能夠誘導τ輔助 細胞反應之抗原決定基連接來增強肽誘導CTl活性之能 力。雖然CTL肽可與τ辅助版直接連接,但通常藉由間隔 分子將CTL抗原決定基/HTL抗原決定基接合物連接。此間 隔基通常包含在生理條件下實質上不帶電荷的相對較小中 性分子,諸如胺基酸或胺基酸模擬劑。間隔基通常選自例 如A1 a、Gly或非極性胺基酸或中性極性胺基酸之其他中性 間隔基。應瞭解,視需要存在的間隔基不一定包含相同殘 基且因此可為異寡聚體或同寡聚體。存在時,間隔基通常 為至少1或2個殘基,更通常為3至6個殘基且有時為1〇或1〇 個以上殘基。CTL肽抗原決定基可在(^[肽之胺基末端或 緩基末端直接或經由間隔基與T輔助肽抗原決定基連接。 免疫原性狀或T辅助狀之胺基末端可經酿化。 HTL肽抗原決定基亦可經修飾以改變其生物特性。舉例 而言’其可經修飾以包括D-胺基酸以增強其對蛋白酶的抗 性且從而延長其血清半衰期,或其可與其他分子(諸如脂 142769.doc -122- 201021828 質、蛋白質、碳水化合物及其類似物)接合以增強其生物 活性。舉例而言,τ辅助肽可在胺基或羧基末端與一或多 個棕櫚酸鏈接合。 X.C.3· CTL肽與T細胞致敏劑之組合 在有些實施例中,本發明之醫藥組合物中可能需要包括 至少一種將B淋巴細胞或T淋巴細胞致敏的組分。脂質已被 鑑別為能夠將CTL活體内致敏的藥劑。舉例而言,標棚酸 殘基可與離胺酸殘基之ε-胺基及a-胺基連接,且接著例如 ® 經由一或多個連接殘基(諸如Gly、Gly-Gly_、Sei:、Sei^Sei· 或其類似殘基)與免疫原性肽連接。接著可將脂質化肽以 併入脂質體内之微胞或顆粒形式直接投與,或以於佐劑 (例如不完全弗氏佐劑)中之乳液形式投與。在一較佳實施 例中,特別有效的免疫原性組合物包含連接於Lys之ε_胺 基及α-胺基的掠櫚酸,其經由鍵聯(Ser-Ser)連接於免疫原 性肽之胺基末端。 作為CTL反應之脂質致敏之另一實例,可使用大腸桿菌 脂蛋白(諸如三棕櫚醯基-S-甘油基半胱胺醯基絲胺醯基_絲 胺酸(PsCSS))在病毒特異性CTL與適當肽共價連接時將該 CTL 致敏(參見例如 Deres 等人,Nature 342:561,1989)。舉 例而言,可將本發明之肽與P3CSS偶聯,且將脂肽投與個 體以特異性地致敏針對標靶抗原之免疫反應。此外,由於 中和抗體之誘導亦可用P3CSS接合抗原決定基致敏,因此 可將此兩種組合物組合以更有效地誘發體液介導反應與細 胞介導反應。 142769.doc -123- 201021828 X.C.4.包含經CTL及/或HTL肽脈衝標記之DC的疫 苗組合物 本發明之疫苗組合物之一實施例包含將具有抗原決定基 之肽之混合物離體投與來自患者血液之PBMC或自其所分 離之DC。可使用有利於收穫DC之藥物,諸如 Progenipoietin™ (Pharmacia-Monsanto, St. Louis, MO)或 GM-CSF/IL-4。在用肽脈衝標記DC之後且在再輸注入患者 内之前,洗滌DC以移除未結合的肽。在此實施例中,疫 苗包含經肽脈衝標記之DC,其在其表面呈現與HLA分子 複合之經脈衝標記之肽抗原決定基。 DC可離體經肽混合物脈衝標記,其中有些刺激針對 58P1D12之CTL反應。視需要可包括有助於CTL反應之輔 助T細胞(HTL)肽,諸如天然或人工寬鬆限制性II類HL A 肽。因此,本發明之疫苗用於治療表現或過度表現 58P1D12之癌症。 X.D.)過繼性免疫療法 抗原性58P1D12相關肽亦用於離體誘發CTL及/或HTL反 應。所得CTL或HTL細胞可用於治療對其他習知治療形式 無反應或對本發明之治療性疫苗肽或核酸無反應之患者之 腫瘤。藉由將患者或遺傳相容性CTL或HTL前驅細胞連同 抗原呈現細胞(APC)(諸如樹突狀細胞)源及適當免疫原性 肽一起培育於組織培養物中來誘導針對特定抗原之離體 CTL或HTL反應。培育適當時間(通常約7-28天)之後(其中 前驅細胞經活化且繁殖為效應細胞),將細胞再返注入患 142769.doc -124- 201021828 者内’藉此其摧毁其特異性標把細胞(例如腫瘤細 胞)(CTL)或促進其特異性標把細胞(例如腫瘤細胞)之毀滅 (HTL)。經轉染之樹突狀細胞亦可用作抗原呈現細胞。 X · E.)投與疫苗用於治療性或預防性目的 本發明之醫藥及疫苗組合物通常用於治療及/或預防表 現或過度表現5 8P1D12之癌症。在治療性應用中,將肽及/ 或核酸組合物投與患者’其量足以誘發針對抗原之有效B 細胞、CTL及/或HTL反應且足以治癒或至少部分地遏制或 ® 減緩症狀及/或併發症。足以實現此目的之量被定義為 「治療有效劑量」。有效用於此用途的量例如視以下因素 而定:所投與之特定組合物、投藥方式、所治療之疾病之 階段及嚴重程度、患者之體重及一般健康狀態及主診醫師 之判斷。 對於醫藥組合物,通常將本發明之免疫原性肽或編碼其 之DN A投與已具有表現5 8P1D12之腫瘤的個體。該等狀或 φ 編碼其之DNA可單獨投與或以一或多個肽序列之融合體形 式投與。患者視情況可經單獨或連同其他治療(諸如手術) 一起的免疫原性肽治療。 對於治療性用途,投藥通常應在首次診斷到58piD丨2相 關癌症時開始。繼之提高劑量,直至症狀至少實質上緩解 且爾後維持一段時間。傳遞至患者之疫苗組合物之實施例 (亦即包括(但不限於)諸如肽混合物、多抗原決定基多肽、 小基因或T A A特異性C T L或經脈衝標記之樹突狀細胞的實 施例)可根據疾病階段或患者健康狀態改變。舉例而言, 142769.doc 125- 201021828 與替代實施例相比,在患有表現58P1D12之腫瘤的患者 中’包含58P1D12特異性CTL的疫苗可更有效地殺死患有 晚期疾病之患者之腫瘤細胞。 提供藉由足以有效刺激細胞毒性T細胞反應之投藥模式 所傳遞之肽抗原決定基之量通常為重要的;亦可根據本發 明之此實施例獲得刺激輔助T細胞反應之組合物。 初始治療性免疫之劑量通常以單位劑量範圍出現,其t 下限值為約i、5、50、500或1000叫且上限值為約 10,000、2〇’〇〇〇、30,000或50,000吨。人類之劑量值範圍 通常為每70公斤患者約500 pg至約50,000叫。如藉由量測 自患者血液獲得之CTL及HTL之特異性活性所判定,視患 者反應及病狀而定,可經數週至數月依照強化療法投與約 1.0 gg至約50,〇〇〇叫之間的肽強化劑量。投藥應延續直至 至)臨床症狀或實驗室試驗表明瘤形成已消除或減少且爾 後將此狀況維持一段時間。根據此項技術中已知的方法調 節劑量、投藥途徑及給藥時程。 在某些實施例中’本發明之肽及組合物係在重病狀態 «即’危急生命或潛在危急生命的情形)下使用。在該等 情況下’由於外來物質之量極小且本發明之較佳組合物中 之肽相對無毒性’因此可能投與相料該等所述給藥量實 質過量的該等肽組合物且治療醫師可能覺得有此必要。 本發明之疫苗組合物亦可僅用作預防卜㈣㈣ 性免疫之劑量通常以單位劑量範圍出現,#中下限值為約 1、5、50、500或 1000 μ§且上限值為約1〇,_、2〇,_、 142769.doc -126- 201021828 30,000或50,000 pg。人類之劑量值範圍通常為每7〇公斤患 者約500 pg至約50,000 pg。之後,在初始投與疫苗後約四 週至六個月,以限定間隔時間投與約1_〇叫至約5〇,〇〇〇阳 之間之強化劑量的肽。疫苗之免疫原性可藉由量測自患者 血液樣本獲得之CTL及HTL之特異性活性來評估。 用於治療性治療之醫藥組合物意欲非經腸、局部 (topical)、經口、經鼻、鞘内或局部(1〇cal)(例如以乳膏或 局部軟膏之形式)投與。醫藥組合物較佳以非經腸(例如靜 ®脈内、皮下、皮内或肌肉内)方式投與。因此,本發明提 供用於非經腸投與之組合物,其包含免疫原性肽溶於或懸 浮於可接受之載劑(較佳水性載劑)中之溶液。 可使用多種水性載劑,例如水、緩衝水' 〇 8%鹽水、 0.3%甘胺酸、玻糖醛酸及其類似載劑。該等組合物可藉由 習知、熟知的滅菌技術滅菌,或可無菌過濾。所得水溶液 可封装以供原樣使用或凍乾,凍乾製劑在投與之前與無菌 溶液組合。 ❿ 組合物可含有接近生理條件所需的醫藥學上可接受之輔 助物質,諸如pH調節劑及緩衝劑、張力調節劑、滿潤劑、 防腐劑及其類似物質,例如乙酸納、乳酸納、氣化鋼、氣 化鉀、氯化鈣、去水山梨糖醇單月桂酸酯、油酸三 酯等。 本發明之肽在醫藥調配物中的濃度可廣泛不同,亦即小 ;約· 1重量/〇、一般為約2重量%或至少約2重量%至高達 20重量%至50重量。番 置/。次5〇重篁以上,且主要依據流體體 142769.doc ·】27· 201021828 積、黏度等根據所選特定投藥模式選擇。 醫藥組合物通常包括人類單位劑量形式之組合物,該組 合物包含人類單位劑量之可接受載劑(在一實施例中,為 水性載劑)且以熟習此項技術者已知之用於將該等組合物 才又’、人類的體積/量投與(參見例如⑽,s harmaceutical Sciences ’ 第 17版,A. Gennaro編,]VJackCelis, J. Immunol. 165:539-547 (2000)). After immunization of the peptide composition of the present invention by injection, spray, oral, transdermal, transmucosal, intrapleural, intraorbital or other appropriate route, the host's immune system produces a large amount of CTL specific for the desired antigen and / or HTL to respond to the vaccine. Thus, the host becomes at least partially immune to cells that later form or overexpress the 58P1D12 antigen, or at least a certain therapeutic benefit when the antigen is associated with the tumor. In some embodiments, it is desirable to combine a class I peptide component with a component that induces or facilitates a reaction against a target antigen neutralizing antibody and/or helper T cell. A preferred embodiment of the composition comprises the steroid and steroid epitopes of the invention. An alternative embodiment of the composition comprises a class I and/or class II 142769.doc • 113. 201021828 epitope of the invention, and a cross-reactive HTL epitope such as PADREtm (Epimmune, San Dieg〇, CA) Molecules (for example, as described in U.S. Patent No. 5,736,142). The vaccine of the present invention may also include antigen presenting cells (Apc) such as dendritic cells (DC) as a carrier for presenting the peptide of the present invention. The vaccine composition can be produced in vitro after the dendritic cells have moved and harvested, wherein the loading of the dendritic cells is performed in vitro. For example, dendritic cells are transfected with, for example, a minigene of the invention or pulsed with a peptide. Dendritic cells can then be administered to the patient to induce an immune response in vivo. Vaccine compositions (DNA-based or peptide-based) in vivo administration can also be combined with dendritic cell movement, wherein the dendritic cells are carried in vivo. Fortunately, when an array of epitopes is selected for inclusion in a multi-antigen thiol composition for use in a vaccine, or a discrete antigen to be incorporated into a vaccine and/or to be encoded by a nucleic acid (such as a minigene) is selected. At the time of the base, the following principles are used. The following principles are better weighed to make choices. The plurality of epitopes to be incorporated into a given vaccine composition can be, but are not necessarily, the sequence of the natural antigen from which the antigen/thiol is derived. 1) Select the antigenic determinant that mimics the observed immune response associated with tumor elimination after administration. For class 1 11]^8, this includes 3_4 epitopes from at least one tumor-associated 彳/u original (TAA). A similar basic principle is used for the η-type hla; again, 3_4 epitopes are selected from at least one TAA (see, for example, Rosenberg et al. ' science 278: 1447-1450). An epitope from a TAA can be used in combination with an epitope derived from one or more other ΤΑA to prepare a vaccine that is directed to a tumor having a different pattern of expression of TAA that is frequently subjected to 142769.doc • 114-201021828. 2) Select the antigenic determinant associated with the necessary binding affinity for immunogenicity: for class I HLA, IC5Q is 500 η Μ or less than 500 η Μ, usually 200 η Μ or less than 200 η Μ; and for steroid HLA, The redundancy is 1〇〇〇ηΜ or less than 1〇〇〇ηΜ. 3.) Select sufficient peptide arrays with supermotifs or sufficient peptide arrays with allele-specific motifs to achieve broad population coverage. For example, preferably ❹ has a population coverage of at least 80%. The breadth or redundancy of population coverage can be assessed using Monte Carlo anaiysis (a statistical assessment known in the art). 4) When an epitope is selected from a cancer-associated antigen, it is generally useful to select an analog since the patient can form a tolerance to a natural epitope. 5)) A particularly relevant epitope is called a "nested epitope". Nested epitopes are present where at least two epitopes in a given peptide sequence overlap. The nested peptide sequence may comprise a B cell, a class 1 <RTIgt; When a nested epitope is provided, it is generally intended to provide a maximum number of epitopes per sequence. Therefore, the monomorphism avoids providing a peptide longer than the amino terminus of the amino terminal epitope of the peptide and the carboxyl terminus of the carboxyl terminal epitope. When multiple epitope sequences (such as sequences comprising nested epitopes) are provided, screening sequences are often important to ensure that the sequence does not have pathological or other deleterious biological properties. 6.) If a multi-antigenic protein is produced or a minigene is produced, the objective is to produce a minimal peptide covering the desired epitope, at 142769.doc -115-201021828. This principle is similar to the principle used when selecting a peptide comprising a nested epitope. However, there is a trade-off between the need to minimize size for artificial multi-receptor peptides and any intervening sequences between antigenic determinants in the integration of multiple epitope proteins. For example, a spacer amino acid residue can be introduced to avoid a zygosing epitope (an epitope determined by the immune system, in the absence of a target antigen, and only by artificially merging the epitope), or Promotes division between epitopes and thereby enhances epitope presentation. A zygosity epitope is generally avoided because the recipient can produce an immune response against a non-native ◎ epitope. As a "binding antigen" determinant epitope, it is particularly worthy of attention. A dominant antigenic determinant can cause a positive response, thereby attenuating or inhibiting an immune response to other epitopes. 7.) If the sequence of the plurality of variants exists in the same target protein, the potential peptide epitope can also be selected based on its conservation. For example, a conservative standard can be defined as a complete sequence of a class I HLA-binding peptide or a complete 9-brace core of a class-binding peptide that can be conserved in a specified percentage of the sequence specific for the specific protein antigen©. X - C. 1, a small gene vaccine can utilize a variety of different methods that allow simultaneous delivery of multiple epitopes. A nucleic acid encoding a peptide of the present invention is a particularly useful embodiment of one of the inventions. Preferably selected according to the criteria set forth in the previous section. A preferred method of administering a nucleic acid encoding a peptide of the invention uses a minigene 142769.doc-116-encoding a peptide comprising one or more epitopes of the invention. 201021828 Constructs. The use of multiplex epitope minigenes is described below and in the following literature: Ishioka et al, J. Immunol. 162: 3915-3925, 1999; An, L. and Whitton, JL, J. Virol. : 2292, 1997; Thomson, SA et al, J. Immunol. 157:822, 1996; Whitton, JL et al, J. Virol 67:348, 1993; Hanke, R. et al., Vaccine 16:426, 1998 For example, edit The code is derived from the polymorphism DNA and plastid of 58P1D12 with a superbasic and/or motif epitope (PADRETM universal helper T cell® epitope or multiple htl epitopes from 58P1D12) The network displacement signal sequence can be engineered. Vaccines can also contain epitopes obtained from other TAAs. The immunogenicity of multiple epitope determinants can be demonstrated in transgenic mice to assess the antigens tested. The size of the Ctl-induced reaction. In addition, the immunogenicity of the DNA-encoding epitope in vivo can be correlated with the in vitro reaction of the specific CTL line against the target cells transfected with the human plastid. Therefore, Such experiments may demonstrate 1): a minigene is used to generate a CTL response; and 2) an induced CTL recognizes a cell that exhibits an encoded epitope. For example, 'to generate a selected antigen encoding for expression in a human cell The DNA sequence of the determinant (small gene) can reverse the amino acid sequence of the epitope. The human codon usage table can be used to guide the codon usage of each amino acid. The DNA sequence of the epitope epitope can be directly ligated to produce a contiguous polypeptide sequence at turn. To optimize performance and/or immunogenicity, other elements can be incorporated into the minigene design. Reversible translation and inclusion in 142769. Examples of amino acid sequences in the gene sequence of doc-117-201021828 include: HLA epitopes, class II HLA epitopes, antibody epitopes, ubiquitination signal sequences and/or endoplasmic reticulum targeting signals . In addition, HLA presentation of CTL and HTL epitopes can be improved by including a synthetic flanking sequence (eg, polyalanine) adjacent to a CTL or HTL epitope or a naturally occurring flanking sequence; Such larger peptides are within the scope of the invention. The minigene sequence can be converted to DNA by assembling the positive and negative oligonucleotides encoding the minigene. Overlapping nucleotides (30-1 碱基 base length) can be synthesized, squashed, purified, and affixed under appropriate conditions using well-known techniques. The ends of the oligonucleotides can be joined using, for example, T4 DNA ligase. This synthetic minigene encoding the epitope polypeptide can then be cloned into the desired vector. Preferably, the vector comprises standard regulatory sequences well known to those skilled in the art to ensure performance in the target cell. Several vector elements are required: a promoter with a downstream selection site for minigene insertion; a polyadenylation signal that effectively terminates transcription; an E. coli origin of replication; and an E. coli selectable marker (eg, ampicillin) Or kanamycin resistance). A variety of promoters, such as the human cell giant virus (hCMV) promoter, can be used for this purpose. For other suitable promoter sequences, see, for example, U.S. Patent Nos. 5,580,859 and 5,589,466. Additional vector modifications may be required to optimize minigene expression and immunogenicity. In some cases 'effective gene expression requires an intron and one or more synthetic or naturally occurring introns can be incorporated into the transcribed region of the minigene. 142769.doc -118- 201021828 It is also possible to test 3: the mRNA stabilization sequence and the replication sequence into human mammalian cells to enhance minigene expression. The expression vector, selected, is placed downstream of the polymorphic cleavage site linker (P〇lylinker) region of the minigene. Transforming this plastid into an appropriate E. coli strain and preparing the DNA using standard techniques>> using restriction mapping and DNA sequence analysis to demonstrate the orientation of the minigene and the DNA sequence and the vector included in the vector All other components. Bacterial cells containing appropriate plastids can be stored as a master cell bank and a working cell bank. Furthermore, the immunostimulatory sequence (158 or CpG) appears to play a role in the immunogenicity of DNA vaccines. In addition to the minigene coding sequences, such sequences may be included in the vector to enhance immunogenicity, if desired. In some embodiments, a bicistronic expression vector can be used which permits the production of a minigene-encoded epitope and a second protein (incorporated for enhancing or reducing immunogenicity). Examples of proteins or polypeptides that advantageously enhance the immune response if co-expressed include cytokines (eg, IL-2, IL-12, GM-CSF), cytokine-inducing molecules (eg, LelF), costimulatory molecules, or against HTL Reactive pan-DR binding protein (PADRETM, Epimmune, San Diego, CA). The helper (HTL) epitope can be linked to the intracellular targeting signal and separately from the expressed CTL epitope; this allows the HTL epitope to be directed to a cellular metabolic region different from the cellular metabolic region of the CTL epitope. This can more efficiently promote the entry of the HTL epitope into the class II HLA pathway, as needed, thereby improving HTL induction. In certain diseases, it may be advantageous to specifically reduce the immune response by co-expression of immunosuppressive molecules (e.g., TGF-[beta] in comparison to HTL or CTL induction. 142769.doc • 119· 201021828 The therapeutic amount of plastid DNA can be prepared, for example, by fermentation in E. coli and subsequent purification. The growth medium was inoculated using an aliquot from the working cell bank and grown to saturation in a shake flask or bioreactor according to the skill of the recipe. The plastid DNA can be purified using standard biological separation techniques such as solid phase anion exchange resins supplied by QIAGEN, Inc. (Valencia, California). When desired, the supercoiled DNA can be separated from the open-loop form and the linear form using gel electrophoresis or other methods. Purified plastid DNA can be prepared for injection using a variety of formulations. The simplest of these is lyophilized DNA reconstituted in sterile phosphate buffered saline (PBS). This method (referred to as "naked DNA") is currently used in intramuscular (IM) administration in clinical trials. In order to maximize the immunotherapeutic effect of minigene DNA vaccines, alternative methods of purifying purified plastid DNA may be required. A variety of methods have been described and new technologies are available. Cationic lipids, glycolipids, and fusion liposomes can also be used in the formulation (see, for example, WO 93/24640; Mannino & Gould-Fogerite, BioTechniques 6(7): 682 (1988); U.S. Patent No. 5,279,833 ; WO 91/06309; and Feigner et al, Proc. Nat'l Acad. Sci. USA 84:7413 (1987)). In addition, peptides and chemistries known as protective, interacting, non-agglomerating compounds (PINC) can also be complexed with purified plastid DNA to affect variables such as stabilization, intramuscular dispersion, or to specific organs or cells. The type of delivery. The stem cell sensitization can be used as a performance assay for the C TL epitope encoded by the minigene and a functional assay for the presentation of class I HLA. For example, plastid DNA is introduced into a mammalian cell line 142769.doc-120-201021828 suitable for use as a target for standard CTL chromium release assays. The method of transfection used will depend on the final formulation. Electroporation can be used for "naked" DNA, while cationic lipids allow direct transfection in vitro. The plastids expressing green fluorescent protein (GFP) can be co-transfected to allow for the enrichment of transfected cells using fluorescence activated cell sorting (FACS). The cells were then labeled with Col.-51 (51Cr) and used as a stem cell for the epitope-specific CTL line. 'The cytolysis based on the 5 Yr release rate indicates the production of the CTL epitope encoded by the minigene. Presented with hlA. The performance of HTL epitopes can be assessed in a similar manner using assays that assess HTL activity. In vivo immunogenicity is the second method of functional testing of small gene DNA formulations. A transgenic mouse expressing an appropriate human HLA protein is immunized with a DNA product. The dosage and route depend on the formulation (for example, intramuscular (iM) for DNA in PBS; intraperitoneal (for DNA complexed with lipids). The spleen cells are harvested on the first day after immunization, and The stimulation was further stimulated for one week in the presence of a peptide encoding each of the epitopes tested. After the treatment, CTL effector cells were assayed using standard techniques to assess the lysis of the loaded peptide, the standard cell of the 〇1* standard. HLA-sensitized target cell lysis with a peptide antigen (in response to a small gene-encoded epitope) demonstrates the DNA vaccine function of inducing CTL in vivo. The HTL epitope is demonstrated in a similar manner in the transgenic gene. Immunogenicity in mice. Alternatively, nucleic acids can be administered using a ballistic delivery method as described, for example, in U.S. Patent No. 5,204,253. The use of this technique to administer particles comprising only DNA. Adhere DNA to particles (such as gold particles) 142769.doc -121- 201021828. Small genes can also be transmitted using other bacteria or viral delivery systems well known in the art, for example, The expression construct of the epitope of the present invention is incorporated into a viral vector such as vaccinia. XC2. Combination of CTL peptide and accessory ribs 3. The plaque composition of the CTL peptide of the present invention can be modified (for example, by simulation) To provide the desired properties, such as a modified serum half-life, expanded population coverage, or enhanced leanness. For example, the peptide can be induced with at least one antigen capable of inducing a tau helper cell response. Determining the ligated linkage to enhance the ability of the peptide to induce CT1 activity. Although the CTL peptide can be directly ligated to the τ-assisted version, the CTL epitope/HTL epitope conjugate is typically ligated by a spacer molecule. This spacer is typically included in the physiology. a relatively small neutral molecule that is substantially uncharged under conditions, such as an amino acid or an amino acid mimetic. The spacer is typically selected, for example, from A1 a, Gly or a non-polar amino acid or a neutral polar amino acid. Other neutral spacers. It will be appreciated that spacers that are present as desired do not necessarily contain the same residues and may therefore be heterooligomers or homooligomers. When present, the spacers are typically at least 1 or 2 residues. , more usually 3 to 6 residues and sometimes 1 〇 or more than 1 residue. CTL peptide epitopes can be at (^[amino or terminal of the peptide, directly or via a spacer and T Auxiliary peptide epitope linkage. The immunogenic trait or T-helper amino terminus can be brewed. The HTL peptide epitope can also be modified to alter its biological properties. For example, it can be modified to include D- Amino acids enhance their resistance to proteases and thereby prolong their serum half-life, or they can bind to other molecules such as lipids 142769.doc-122-201021828, proteins, carbohydrates and their analogues to enhance their biology Activity. For example, a tau helper peptide can be linked to one or more palmitic acids at the amine or carboxy terminus. Combination of X.C.3 CTL Peptide and T Cell Sensitizer In some embodiments, it may be desirable to include at least one component that sensitizes B lymphocytes or T lymphocytes in the pharmaceutical compositions of the present invention. Lipids have been identified as agents capable of sensitizing CTL in vivo. For example, a cap acid residue can be attached to an epsilon-amino group and an a-amine group of an amine acid residue, and then, for example, via one or more linking residues (such as Gly, Gly-Gly_, Sei: , Sei^Sei· or a similar residue thereof) is linked to an immunogenic peptide. The lipidated peptide can then be administered directly as a microcell or granule incorporated into the liposome, or as an emulsion in an adjuvant (e.g., incomplete Freund's adjuvant). In a preferred embodiment, a particularly effective immunogenic composition comprises an ε-amino group attached to the ε-amino group of Lys and an α-amino group, which is linked to the immunogenic peptide via a linkage (Ser-Ser). The amine end. As another example of lipid sensitization of CTL reactions, E. coli lipoproteins such as tripalmitoyl-S-glyceryl cysteamine decyl syllidyl-serine (PsCSS) can be used in virus-specific CTL This CTL is sensitized when covalently linked to the appropriate peptide (see, eg, Deres et al, Nature 342:561, 1989). For example, a peptide of the present invention can be conjugated to P3CSS, and a lipopeptide can be administered to an individual to specifically sensitize an immune response against a target antigen. Furthermore, since the induction of neutralizing antibodies can also be sensitized with P3CSS-binding epitopes, the two compositions can be combined to more efficiently induce a humoral-mediated response and a cell-mediated response. 142769.doc -123- 201021828 XC4. Vaccine composition comprising DCs pulse-labeled with CTL and/or HTL peptides One example of a vaccine composition of the invention comprises administering a mixture of peptides having an epitope to the body in vitro PBMC from the patient's blood or DC isolated from it. A drug that is advantageous for harvesting DC can be used, such as ProgenipoietinTM (Pharmacia-Monsanto, St. Louis, MO) or GM-CSF/IL-4. DCs were washed to remove unbound peptides after pulsed DCs with peptides and before reinfusion into patients. In this embodiment, the vaccine comprises a peptide pulsed DC which presents a pulsed peptide epitope on its surface that is complexed with HLA molecules. DCs can be pulse-labeled ex vivo via peptide mixtures, some of which stimulate CTL responses to 58P1D12. A helper T cell (HTL) peptide that contributes to the CTL response, such as a natural or artificial loose restriction class II HLA peptide, may be included as needed. Thus, the vaccine of the present invention is useful for treating cancers that exhibit or overexpress 58P1D12. X.D.) Adoptive immunotherapy The antigenic 58P1D12-related peptide is also used to induce CTL and/or HTL responses ex vivo. The resulting CTL or HTL cells can be used to treat tumors in patients who do not respond to other conventional therapeutic modalities or who do not respond to the therapeutic vaccine peptides or nucleic acids of the invention. Induction of specific antigens by culturing a patient or a genetically compatible CTL or HTL precursor cell together with an antigen presenting cell (APC) (such as a dendritic cell) source and a suitable immunogenic peptide in tissue culture CTL or HTL reaction. After cultivating for an appropriate period of time (usually about 7-28 days) (in which the precursor cells are activated and propagated into effector cells), the cells are returned to the affected area 142769.doc -124-201021828, thereby destroying their specific markers. Cells (eg, tumor cells) (CTLs) or promote the destruction of their specific target cells (eg, tumor cells) (HTL). Transfected dendritic cells can also be used as antigen presenting cells. X · E.) Administration of Vaccines for therapeutic or prophylactic purposes The pharmaceutical and vaccine compositions of the present invention are generally used to treat and/or prevent cancers that exhibit or overexpress 5 8P1D12. In therapeutic applications, the peptide and/or nucleic acid composition is administered to a patient in an amount sufficient to elicit an effective B cell, CTL and/or HTL response against the antigen and sufficient to cure or at least partially arrest or reduce symptoms and/or complication. An amount sufficient to accomplish this is defined as a "therapeutically effective dose." The amount effective for this use will depend, for example, on the particular composition being administered, the mode of administration, the stage and severity of the condition being treated, the weight and general condition of the patient, and the judgment of the attending physician. For pharmaceutical compositions, the immunogenic peptides of the invention or DN A encoding the same are typically administered to an individual who already has a tumor that exhibits 5 8P1D12. The DNA in which the ORF or φ is encoded may be administered alone or in the form of a fusion of one or more peptide sequences. The patient may be treated with an immunogenic peptide, alone or in combination with other treatments, such as surgery, as appropriate. For therapeutic use, administration should usually begin on the first diagnosis of a 58 piD 相 2 related cancer. The dose is then increased until the symptoms are at least substantially relieved and maintained for a period of time. Examples of vaccine compositions delivered to a patient (i.e., including, but not limited to, examples of peptide mixtures, multi-antigenic polypeptides, minigenes or TAA-specific CTLs or pulse-labeled dendritic cells) Change according to the stage of the disease or the health status of the patient. For example, 142769.doc 125-201021828 A vaccine comprising a 58P1D12-specific CTL in a patient with a tumor exhibiting 58P1D12 can more effectively kill tumor cells in patients with advanced disease compared to alternative embodiments. . It is generally important to provide an amount of a peptide epitope that is delivered by a mode of administration sufficient to effectively stimulate a cytotoxic T cell response; a composition that stimulates a helper T cell response can also be obtained in accordance with this embodiment of the invention. The dose of initial therapeutic immunization typically occurs in a unit dosage range with a lower t limit of about i, 5, 50, 500 or 1000 and an upper limit of about 10,000, 2 〇' 〇〇〇, 30,000 or 50,000 ton. Human dose values typically range from about 500 pg to about 50,000 calls per 70 kg patient. As determined by measuring the specific activity of CTL and HTL obtained from the patient's blood, depending on the patient's response and condition, it can be administered from about 1.0 gg to about 50 in weeks to months according to intensive therapy. Call between the peptide fortification dose. Administration should continue until the clinical symptoms or laboratory tests indicate that neoplasia has been eliminated or reduced and this condition is maintained for a period of time. The dosage, route of administration, and duration of administration are adjusted according to methods known in the art. In certain embodiments, the peptides and compositions of the invention are used in a critical condition «i.e., a life-threatening or potentially life-threatening condition. In such cases 'because the amount of foreign material is extremely small and the peptides of the preferred compositions of the invention are relatively non-toxic', it is possible to administer the peptide compositions in such amounts as the substantial amount of such peptides administered and treated The physician may feel that this is necessary. The vaccine composition of the present invention may also be used only as a prophylactic dose. The dose of the immunization usually occurs in a unit dose range, and the #lower limit value is about 1, 5, 50, 500 or 1000 μ§ and the upper limit is about 1 〇, _, 2〇, _, 142769.doc -126- 201021828 30,000 or 50,000 pg. Human dose values typically range from about 500 pg to about 50,000 pg per 7 kg of patient. Thereafter, about 4 to 6 months after the initial administration of the vaccine, a fortified dose of peptide between about 1 〇 to about 5 〇, 〇〇〇 投 is administered at defined intervals. The immunogenicity of the vaccine can be assessed by measuring the specific activity of CTL and HTL obtained from the patient's blood sample. Pharmaceutical compositions for therapeutic treatment are intended to be administered parenterally, topically, orally, nasally, intrathecally or topically (e.g., in the form of a cream or topical ointment). The pharmaceutical composition is preferably administered parenterally (e.g., intravenous, subcutaneous, intradermal or intramuscular). Accordingly, the present invention provides a composition for parenteral administration comprising a solution in which an immunogenic peptide is dissolved or suspended in an acceptable carrier, preferably an aqueous carrier. A variety of aqueous carriers can be used, such as water, buffered water '〇 8% saline, 0.3% glycine, uronic acid, and the like. The compositions may be sterilized by conventional, well known sterilization techniques or may be sterile filtered. The resulting aqueous solution may be packaged for use as is or lyophilized, and the lyophilized preparation is combined with a sterile solution prior to administration.组合 The composition may contain pharmaceutically acceptable auxiliary substances required for physiological conditions, such as pH adjusting agents and buffers, tonicity adjusting agents, sizing agents, preservatives and the like, such as sodium acetate, sodium lactate, Gasified steel, potassium carbonate, calcium chloride, sorbitan monolaurate, oleic acid triester, and the like. The concentrations of the peptides of the present invention in pharmaceutical formulations can vary widely, i.e., are small; about 1 weight/twist, typically about 2% by weight or at least about 2% by weight up to 20% to 50% by weight. Set /. The second time is more than 5 ,, and mainly based on the fluid body 142769.doc ·] 27· 201021828 Product, viscosity, etc. are selected according to the specific drug delivery mode selected. Pharmaceutical compositions typically comprise a composition in a human unit dosage form comprising a human unit dose of an acceptable carrier (in one embodiment, an aqueous carrier) and known to those skilled in the art to The composition is again ', human volume / volume contribution (see for example (10), s harmaceutical Sciences '17th edition, edited by A. Gennaro,] VJack
Publishing Co.,Easton, Pennsylvania,1985)。舉例而言, 用於初始免疫的肽劑量對於7〇公斤患者可為約1至約 50,000叫’通常為1〇〇_5 〇〇〇㈣。舉例而言,對於核酸, 可使用在多個部位肌肉内(或皮下或皮内)投與之呈裸核酸 形式之表現載體以〇.5_5 mg之量執行初始免疫。亦可使用 基因搶投與核酸(〇.1至1000 pg) ^ 3_4週培育期之後,接著 投與強化劑量。強化劑可為以5><1〇7至5xl〇9 pfu之劑量投 與的重組禽痘病毒。 對於抗體’治療通常包括經由可接受之投藥途徑(諸如 靜脈内注射(IV))重複投與抗58P1D12抗體製劑,其劑量通 常在約0_1至約10 mg/kg體重之範圍内。一般而言,每週 10-500 mg MAb範圍内之劑量有效且耐受性較佳。此外, 抗58P1D12 MAb製劑之約4 mg/kg患者體重之靜脈内初始 負荷劑量、接著每週約2 mg/kg之靜脈内劑量代表一種可 接受的給藥方案。如熟習此項技術者所瞭解,在特定情況 下,多種因素會影響理想劑量。該等因素包括例如組合物 之半衰期、Ab之結合親和性、物質之免疫原性、患者中之 58P1D12表現程度、循環排出58P1D12抗原之程度、所要 142769.doc •128- 201021828 穩態濃度、治療頻率及化學治療劑或其他藥劑與本發明之 治療方法組合使用的影響,以及特定患者之健康狀態。非 限制性較佳人類單位劑量為例如5〇〇 pg-i mg、1 mg-50 mg、50 mg-100 mg、100 mg-200 mg、200 mg-300 mg、 400 mg-500 mg、500 mg-600 mg、600 mg-700 mg、700 mg-800 mg、800 mg-900 mg、900 mg-1 g或 1 mg-700 mg。 在某些實施例中,劑量在例如每公斤體重2-5 mg範圍内, 繼之以1-3 mg/kg之每週劑量;例如每公斤體重〇 5 mg、1 mg、2 mg、3 mg、4 mg、5 mg、6 mg、7 mg、8 mg、9 mg、10 mg,繼之以兩週、三週或四週之每週劑量;例如 每公斤體重0.5-10 mg,繼之以兩週、三或四週之每週劑 量;每週 225、250、275、300、325、350、375、400 mg m2之身體區域;每週1-600 mg m2之身體區域;每週225-400 mg m2之身體區域;該等劑量之後可為2、3、4、5、 6、7、8、9、19、11、12或12週以上之每週劑量。 在一實施例中,聚核普酸之人類單位劑量形式包含提供 任何治療效應的適當劑量範圍或有效量。如一般技術者所 瞭解,治療效應視多種因素而定,包括聚核苷酸之序列、 聚核苷酸之分子量及投藥途徑。劑量通常由醫師或其他健 康護理專業人員根據此項技術中已知的多種參數(諸如症 狀嚴重程度、患者病史及其類似參數)選定。一般而言, 對於具有約20個鹼基之聚核苷酸,劑量範圍例如可選自諸 如約 0.1、0_25、0.5、1、2、5、10、20、30、40、50、 60、70、80、90、100、200、300、400或 500 mg/kg之經 142769.doc -129- 201021828 獨立選擇之下限直至約60、80、100、200、300、400、 500、750、1000 ' 1500、2000、3000、4000、5000、 6000、7000 ' 8000、9000 或 10,000 mg/kg之經獨立選擇之 上限、大於此下限。舉例而言,劑量可約為以下任何劑 量:0.1 至 100 mg/kg、0.1 至 50 mg/kg、0.1 至 25 mg/kg、0.1 至 10 mg/kg、1至 500 mg/kg、100 至400 mg/kg、200 至 300 mg/kg、1 至 100 mg/kg、100 至 200 mg/kg、300 至 400 mg/kg、400 至 500 mg/kg、500 至 1〇〇〇 mg/kg、500 至 5000 mg/kg或500至1〇,〇〇〇 mg/kg。一般而言,與將核苷酸較直❹ 接地施用於患病组織相比,非經腸投藥途徑可能需要較高 劑量的聚核苷酸,如增加長度之聚核苷酸。 在一實施例中,T細胞之人類單位劑量形式包含提供任 何治療效應之適當劑量範圍或有效量。如一般技術者所瞭 解,治療效應視多種因素而定。劑量通常由醫師或其他健 康護理專業人員根據此項技術中已知的多種參數(諸如症 狀厫重程度、患者病史及其類似參數)選定。劑量可為約 1〇4個細胞至約1〇6個細胞、約1〇6個細胞至約1〇8個細胞、© 約1〇8至6約1011個細胞或約1〇8至約5χ1〇,0個細胞。劑量亦可 為約1〇6個細胞/平方公尺至約1〇10個細胞/平方公尺,或約 106個細胞/平方公尺至約1〇8個細胞/平方公尺。 本發明之蛋白質及/或編碼蛋白質之核酸亦可經由脂 體投與,該等脂質體亦可用於:υ將蛋白心向特Μ 織’心淋巴組織;2)選擇性㈣向疾病細胞;或3)延長 肽組合物之半衰期。脂質體包括乳液、發泡體、微胞、不 142769.doc •130- 201021828 溶性單層、液晶、磷脂分散液、片狀層及其類似物。在該 等製劑中,將待傳遞之肽單獨或連同結合淋巴樣細胞當中 普遍存在之受體的分子(諸如結合CD45抗原之單株抗體)— 起或與其他治療性或免疫原性組合物一起合併作為脂質體 之部分。因此,經本發明之所要肽填充或修飾的脂質體可 導向淋巴樣細胞所在部位,其中脂質體接著傳遞肽組合 物。根據本發明使用之脂質體係由標準微脂粒成形脂質形 成’該等脂質通常包括中性及帶負電荷的填脂及固醇,諸 ® 如膽固醇。通常藉由考量例如脂質體尺寸、脂質體在血流 中之酸不穩定性及穩定性來指導脂質之選擇。可使用製備 脂質體之多種方法,如以下文獻中所述:例如Sz〇ka等 人,Ann. Rev. Biophys. Bioeng. 9:467 (1980);及美國專利 第 4,235,871 號、第 4,501,728 號、第 4,837,028 號及第 5,〇19,369 號。 對於免疫系統之托向細胞,欲併入脂質體内的配體可包 ❿括例如對所要免疫糸統細胞之細胞表面決定子特異的抗體 或其片段。含有肽的脂質體懸浮液可以靜脈内、局部 (locally)、局部(topically)等方式投與,其劑量尤其因投藥 方式、所傳遞之肽及所治療之疾病之階段而異。 對於固體組合物,可使用習知的無毒性固體載劑,該等 固體載劑包括例如醫藥級之甘露糖醇 '乳糖、澱粉、硬脂 酸鎮、糖精鈉、滑石、纖維素、葡萄糖、嚴糖、碳酸鎮及 其類似物。對於經口投藥,可藉由將任何常用賦形劑(諸 如以上所列舉之彼等載劑)與通常! 〇_95%(且更佳25%_75% 142769.doc •131· 201021828 肽)合併來形 之濃度)之活性成分(亦即,一或多種本發明之 成醫藥學上可接受之無毒性組合物。 對於喷霧劑投藥,免疫原性肽較佳以細粉狀形式隨同界 面活性劑及推進劑-起提供。肽之典型百分比為約請重 量%·20重量%,較佳約1重㈣-10重量。/。。當然,界面活 性劑須無毒且較佳可溶於推進劑中。該等藥劑之代表為含 有約6至22個碳原子之脂肪酸(諸如己酸、辛酸、月桂酸、 棕搁酸、硬脂冑、亞麻油酸、次亞麻油酸、硬脂油酸 (olesteric acid)及油酸)與脂族多元醇或其環軒之醋或偏 酯。可使用混合酯,諸如混合甘油酯或天然甘油酯。界面 活性劑可構成組合物之約〇」重量%_2〇重量%、較佳約 0.25-5重量%。組合物之其餘部分通常為推進劑。視需要 亦可包括載劑,例如對於鼻内傳遞使用卵磷脂。 X.I.) 58P1D12之診斷及預後實施例 如本文中所揭示,58P1D12聚核苷酸、多肽、反應性細 胞毒性T細胞(CTL)、反應性輔助τ細胞(HTL)及抗多肽抗 體可用於檢查與細胞生長失調相關之病狀(諸如癌症,尤 其表I中所列之癌症)的熟知診斷性、預後性及治療性檢定 (參見例如某些癌症中之組織表現及其過度表現之特定模 式,如例如標題為「58P1D12在正常組織及患者樣本中之 表現分析」之實例中所述)。 58P1D12可類似於卵巢癌相關抗原CA125,此為醫療從 業者多年來用於鑑別及監測卵巢癌之存在的生物標誌(參 見例如 Gagnon及 Ye,Curr. Opin· Obstet. Gynecol. 2008; 142769.doc •132· 201021828 20:9-13)。在類似背景下亦可使用多種其他診斷標誌,包 括p53及 K-ras(參見例如 Tulchinsky等人,int j Mol Med 1999 年 7 月 4(1):99-102 及 Minimoto 等人,Cancer Detect Prev 2000; 24(1):1-12)。因此,58P1D12 聚核苷酸及多肽 (以及用於鑑別該等分子之存在的58P1D12聚核苷酸探針及 抗5 8P1D12抗體)及其特性之此揭示内容容許熟習此項技術 者以與在例如針對檢查與癌症相關之病狀之多種診斷檢定 中所用之彼等方法類似的方法使用該等分子。 使用5 8P1D12聚核苷酸、多肽、反應性τ細胞及抗體之 診斷方法之典型實施例類似於使用例如PSA聚核苷酸、多 肽、反應性T細胞及抗體之已充分建立之診斷性檢定的彼 等方法。舉例而言,正如PSA聚核苷酸可用作探針(例如在 北方分析法中,參見例如Sharief等人,Biochem. Mol. Biol· Int. 33(3):567-74(1994))及引子(例如在 PCR分析法 中,參見例如Okegawa等人,J. Urol. 163(4): 1 189-1190 (2000))以在監測前列腺癌中之PSA過度表現或轉移之方法 中觀測PSA mRNA之存在及/或含量,本文中所述的 58P1D12聚核苷酸可以相同方式用於偵測卵巢癌及表現此 基因之其他癌症中之58P1D12過度表現或轉移。或者,正 如PSA多肽可用於產生對PS A特異之抗體,該等抗體接著 可在監測PSA蛋白質過度表現(參見例如Stephan等人, Urology 55(4):560-3 (2000))或前列腺細胞之轉移(參見例 如 Alanen等人,Pathol. Res. Pract· 192(3):233-7 (1996))的 方法中用於觀測PSA蛋白質之存在及/或含量,本文中所述 142769.doc -133- 201021828 的5 8P 1D12多肽可用於產生供偵測卵巢細胞及表現此基因 之其他癌症之細胞中的58P1D12過度表現或轉移之用的抗 特定而言,由於轉移包括癌細胞自源器官(諸如肺或卵 巢#)移至身體之不同區域(諸如淋巴結),因此可使用檢查 生物樣本中是否存在表現58P1D12聚核苷酸及/或多肽之細 胞的檢定提供轉移之證據。舉例而言,當發現正常情況下 不含有58P1D12表現細胞之組織的生物樣本含有58piD12 表現細胞時,此發現指示轉移。 或者’ 58P1D12聚核苦酸及/或多肽可用於提供癌症證 據,例如’當發現在正常情況下不表現58P1Di2或以不同 程度表現58P1D12之生物樣本中的細胞表現58P1D12或具 有58P1D12之更強表現時(參見例如表I中所列之癌症中及 附圖中所示之患者樣本中之58P1D12表現)。在該等檢定 中,熟習此項技術者可能進一步希望藉由測試生物樣本甲 是否存在第二組織限制性標誌(除5 8 P1D12外)來產生轉移 之補充證據。 使用免疫組織化學法鑑別組織切片内是否存在58P1D12 多肽可表明彼組織内之某些細胞之狀態變化。此項技術中 已充分瞭解’抗體能夠定位於在癌細胞中表現的多肽為診 斷疾病、疾病階段、發展及/或腫瘤侵害性之存在的方 式。此抗體亦可偵測與對應的非惡性腫瘤組織相比癌細胞 内之多肽之分布變化。 5 8P1D12多肽及免疫原性組合物亦適用於觀察疾病狀態 142769.doc -134- 201021828 下亞細胞蛋白質定位變化之現象。細胞自正常狀態變化至 患病狀態促使細胞形態發生變化,且通常伴隨亞細胞蛋白 質定位/分布之變化。舉例而言,在正常細胞中以極化方 式受到表現的細胞膜蛋白質在疾病中可發生變化,導致蛋 白質以非極性方式分布於整個細胞表面上。 疾病狀態下亞細胞蛋白質定位變化之現象已藉由使用免 疫組織化學方法經由MUC 1及Her2蛋白質表現得到證明。 除醣蛋白之某種核上定位外,正常上皮細胞亦具有MUC 1 ® 之典型頂端分布,而惡性病變通常展現非極性的染色模式 (Diaz等人,The Breast Journal, 7; 40-45 (2001) ; Zhang等 人,Clinical Cancer Research, 4; 2669-2676 (1998) ; Cao 等 人,The Journal of Histochemistry and Cytochemistry, 45: 1547-1557 (1997))。此外,正常乳房上皮對於Her2蛋白質 呈陰性,或僅呈現基底外側分布,而惡性腫瘤細胞可在整 個細胞表面上表現此蛋白質(De Potter等人,International Journal of Cancer, 44; 969-974 (1989) ; McCormick等人, 117; 935-943 (2002))。或者,蛋白質之分布可自僅表面定 位發生變化,以包括患病狀態下的擴散細胞質表現。本實 例可見於 MUCl(Diaz等人,The Breast Journal, 7: 40-45 (2001))。 如藉由免疫組織化學方法所偵測,蛋白質在細胞中之定 位/分布之變化亦可提供有關某些治療形式之便利性的重 要資訊。最後此點藉由蛋白質可在正常組織中位於細胞 内、但在惡性腫瘤細胞中位於細胞表面之情形得到說明, 142769.doc -135- 201021828 細胞表面定位使得細胞有利於進行基於抗體之診斷及治療 療程。當蛋白質定位之此變化針對58P1D12發生時, 58P1D12蛋白質及其相關的免疫反應極其有用。使用 5 8P1D12組合物容許熟習此項技術者作出重要的診斷及治 療決定。 當多肽出現於在正常情況下不產生58P1D12的組織中 時,對58P1D12特異之免疫組織化學試劑亦可用於偵測表 現58P1D12之腫瘤之轉移。 因此,58P1D12多肽及其免疫反應所產生之抗體可在多 種重要背景下(諸如熟習此項技術者已知的診斷性、預後 性、預防性及/或治療性目的)使用。 此外’本發明之58P1D12相關蛋白質或聚核苷酸可用於 治療以58P1D12之過度表現為特徵的病理學病狀》舉例而 言,圖1之胺基酸序列或核酸序列或任一者之片段可用於 產生針對58P1D12抗原之免疫反應。與58P1D12反應的抗 體或其他分子可用於調節此分子之功能,且從而提供治療 益處。 XI.A.)抑制58P1D12蛋白質功能 本發明包括抑制58P1D12結合其結合搭配物或抑制 58P1D12與其他蛋白質結合的多種方法及組合物,以及抑 制58P1D12功能的方法。 XI.B.)經由細胞内抗體抑制58P1D12 在一方法中,經由基因轉移技術將編碼特異性結合 58P1D12之單鏈抗體的重組載體引入58P1D12表現細胞 142769.doc •136· 201021828 内。因此’所編碼之單鏈抗58P1D12抗體在細胞内受到表 現’結合5 8 P1D12蛋白質’且從而抑制其功能。工程改造 該等細胞内單鏈抗體之方法已熟知。使該等細胞内抗體 (亦稱為「胞内抗體」)特異性乾向細胞内之特定代謝區, 從而在抑制性治療活性集中處提供控制。此技術已成功應 用於此項技術中(欲回顧’ s青參見Richardson及]Marasco, 1995,TIBTECΗ第13卷)。胞内抗體經證明可實質上消除其 他充裕細胞表面受體之表現(參見例如Richards〇n等人, ® I"5, Pro。· Natl. Acad. Sci. USA 92: 3137-3 141 ; Beerli等 人,1994,J. Biol. Chem. 289: 23931-23936 ; Deshane 等 人 ’ 1994, Gene Ther. 1: 332-337)。 單鏈抗體包含藉由可撓性連接子多肽連接之重鏈及輕鏈 之可變域,且作為單一多肽受到表現。單鍵抗體視需要以 單鏈可變區片段與輕鏈恆定區接合之形式受到表現。熟知 的細胞内傳遞信號經工程改造入編碼該等單鏈抗體之重組 參聚核苷酸載體内,以便使胞内抗體準確地靶向所要細胞内 代謝區。舉例而言,靶向内質網(ER)之胞内抗體經工程改Publishing Co., Easton, Pennsylvania, 1985). For example, the peptide dose for initial immunization may range from about 1 to about 50,000 for a 7 〇 kg patient' typically 1 〇〇 5 〇〇〇 (d). For example, for nucleic acids, the initial immunization can be performed in an amount of _5_5 mg using a performance vector in a naked nucleic acid administered intramuscularly (or subcutaneously or intradermally) at a plurality of sites. It is also possible to use a gene-scraping and nucleic acid (〇1 to 1000 pg) ^ 3_4 weeks incubation period followed by a booster dose. The enhancer may be a recombinant fowlpox virus administered at a dose of 5 < 1 〇 7 to 5 x 1 〇 9 pfu. Treatment with antibodies typically involves repeated administration of an anti-58P1D12 antibody formulation via an acceptable route of administration (such as intravenous injection (IV)), typically at a dose ranging from about 0_1 to about 10 mg/kg body weight. In general, doses in the range of 10-500 mg MAb per week are effective and well tolerated. In addition, an intravenous initial loading of about 4 mg/kg of patient body weight of the anti-58P1D12 MAb formulation, followed by an intravenous dose of about 2 mg/kg per week, represents an acceptable dosage regimen. As will be appreciated by those skilled in the art, a variety of factors can affect the desired dosage in a particular situation. Such factors include, for example, the half-life of the composition, the binding affinity of the Ab, the immunogenicity of the substance, the degree of 58P1D12 expression in the patient, the extent of circulating the 58P1D12 antigen, the desired 142769.doc •128-201021828 steady state concentration, the frequency of treatment And the effects of a chemotherapeutic or other agent in combination with the method of treatment of the invention, as well as the health status of a particular patient. Non-limiting preferred human unit doses are, for example, 5 〇〇pg-i mg, 1 mg-50 mg, 50 mg-100 mg, 100 mg-200 mg, 200 mg-300 mg, 400 mg-500 mg, 500 mg -600 mg, 600 mg-700 mg, 700 mg-800 mg, 800 mg-900 mg, 900 mg-1 g or 1 mg-700 mg. In certain embodiments, the dosage is, for example, in the range of 2-5 mg per kilogram of body weight, followed by a weekly dose of 1-3 mg/kg; for example, 5 mg, 1 mg, 2 mg, 3 mg per kg body weight , 4 mg, 5 mg, 6 mg, 7 mg, 8 mg, 9 mg, 10 mg followed by a weekly dose of two weeks, three weeks or four weeks; for example 0.5-10 mg per kg body weight, followed by two Weekly, three or four weeks weekly dose; body area of 225, 250, 275, 300, 325, 350, 375, 400 mg m2 per week; body area of 1-600 mg m2 per week; 225-400 mg per week The body area of m2; the dose may be followed by a weekly dose of 2, 3, 4, 5, 6, 7, 8, 9, 19, 11, 12 or more weeks. In one embodiment, the human unit dosage form of the polynucleotide comprises an appropriate dosage range or effective amount to provide any therapeutic effect. As will be appreciated by those of ordinary skill, the therapeutic effect will depend on a number of factors, including the sequence of the polynucleotide, the molecular weight of the polynucleotide, and the route of administration. The dosage is typically selected by a physician or other health care professional based on a variety of parameters known in the art, such as severity of the condition, patient history, and the like. In general, for polynucleotides having about 20 bases, the dosage range can be selected, for example, from, for example, about 0.1, 0-25, 0.5, 1, 2, 5, 10, 20, 30, 40, 50, 60, 70. , 80, 90, 100, 200, 300, 400 or 500 mg/kg 142769.doc -129- 201021828 The lower limit of independent selection up to approximately 60, 80, 100, 200, 300, 400, 500, 750, 1000 ' The upper limit of the independent selection of 1500, 2000, 3000, 4000, 5000, 6000, 7000 '8000, 9000 or 10,000 mg/kg is greater than this lower limit. For example, the dose can be about any of the following: 0.1 to 100 mg/kg, 0.1 to 50 mg/kg, 0.1 to 25 mg/kg, 0.1 to 10 mg/kg, 1 to 500 mg/kg, 100 to 400 Mg/kg, 200 to 300 mg/kg, 1 to 100 mg/kg, 100 to 200 mg/kg, 300 to 400 mg/kg, 400 to 500 mg/kg, 500 to 1 mg/kg, 500 To 5000 mg/kg or 500 to 1 〇, 〇〇〇mg/kg. In general, a parenteral route of administration may require a higher dose of a polynucleotide, such as an increased length of polynucleotide, as compared to applying the nucleotide directly to the diseased tissue. In one embodiment, the human unit dosage form of the T cell comprises an appropriate dosage range or effective amount to provide any therapeutic effect. As the average person understands, the therapeutic effect depends on a number of factors. The dosage is typically selected by a physician or other health care professional based on a variety of parameters known in the art, such as the severity of the condition, the patient's medical history, and the like. The dose may be from about 1 to 4 cells to about 1 to 6 cells, from about 1 to 6 cells to about 1 to 8 cells, from about 1 to 8 to about 6 to about 11 cells or from about 1 to about 8 to about 5 Hey, 0 cells. The dose may also range from about 1 to 6 cells per square meter to about 1 to 10 cells per square meter, or from about 106 cells per square meter to about 1 to 8 cells per square meter. The protein of the present invention and/or the nucleic acid encoding the protein may also be administered via a liposome, and the liposome may also be used to: select the protein core to the special 'heart lymphatic tissue; 2) selectively (4) to the diseased cell; or 3) Extend the half-life of the peptide composition. Liposomes include emulsions, foams, micelles, 142769.doc • 130- 201021828 soluble monolayers, liquid crystals, phospholipid dispersions, flaky layers and the like. In such preparations, the peptide to be delivered alone or together with a molecule that binds to a receptor prevalent in lymphoid cells, such as a monoclonal antibody that binds to a CD45 antigen, or together with other therapeutic or immunogenic compositions Combined as part of the liposome. Thus, liposomes filled or modified by the desired peptide of the present invention can be directed to the site where the lymphoid cells are located, wherein the liposomes then deliver the peptide composition. Lipid systems for use in accordance with the present invention are formed from standard liposome-forming lipids. These lipids typically include neutral and negatively charged fats and sterols, such as cholesterol. Lipid selection is typically guided by consideration of, for example, liposome size, acid instability and stability of the liposome in the bloodstream. A variety of methods for preparing liposomes can be used, as described in, for example, Sz〇ka et al, Ann. Rev. Biophys. Bioeng. 9:467 (1980); and U.S. Patent Nos. 4,235,871, 4,501,728 , 4, 837, 028 and 5, 〇 19, 369. For the donor cell of the immune system, the ligand to be incorporated into the liposome may include, for example, an antibody or a fragment thereof specific for the cell surface determinant of the desired immune system cell. The liposome suspension containing the peptide can be administered intravenously, locally, topically, etc., depending on the mode of administration, the peptide delivered, and the stage of the disease being treated. For solid compositions, conventional non-toxic solid carriers can be employed, including, for example, pharmaceutical grades of mannitol 'lactose, starch, stearic acid, sodium saccharin, talc, cellulose, glucose, Yan. Sugar, carbonated towns and their analogues. For oral administration, any of the usual excipients (such as those listed above) can be used with the usual! 〇 95% (and more preferably 25% _75% 142769.doc • 131· 201021828 peptide) combined active ingredient (ie, one or more pharmaceutically acceptable non-toxic combinations of the invention) For aerosol administration, the immunogenic peptide is preferably provided in the form of a fine powder along with the surfactant and the propellant. A typical percentage of the peptide is about 8% by weight, preferably about one weight (four). -10% by weight. Of course, the surfactant must be non-toxic and preferably soluble in the propellant. These agents are represented by fatty acids containing from about 6 to 22 carbon atoms (such as caproic acid, octanoic acid, lauric acid, Brown acid, stearin, linoleic acid, linoleic acid, olesteric acid and oleic acid) and aliphatic polyols or vinegars or partial esters thereof. Mixed esters such as a glyceride or a natural glyceride. The surfactant may comprise from about 5% by weight to about 2% by weight of the composition, preferably from about 0.25 to 5% by weight. The remainder of the composition is typically a propellant. For example, for the intranasal delivery of lecithin. XI) 58P1D1 Diagnosis and Prognosis of 2 As disclosed herein, 58P1D12 polynucleotides, polypeptides, reactive cytotoxic T cells (CTL), reactive helper tau cells (HTL), and anti-polypeptide antibodies can be used to examine changes associated with cell growth disorders. Well-known diagnostic, prognostic, and therapeutic assays for conditions such as cancer, particularly those listed in Table I (see, for example, specific patterns of tissue performance and overexpression in certain cancers, such as for example the title " 58P1D12 is described in the example of performance analysis in normal tissues and patient samples). 58P1D12 can be similar to the ovarian cancer-associated antigen CA125, a biomarker used by medical practitioners to identify and monitor the presence of ovarian cancer for many years (see, eg, Gagnon and Ye, Curr. Opin· Obstet. Gynecol. 2008; 142769.doc • 132· 201021828 20:9-13). A variety of other diagnostic markers can be used in similar contexts, including p53 and K-ras (see, for example, Tulchinsky et al., int j Mol Med July 4 (1): 99-102 and Minimoto et al., Cancer Detect Prev 2000 ; 24(1): 1-12). Thus, the disclosure of 58P1D12 polynucleotides and polypeptides (and 58P1D12 polynucleotide probes and anti-58P1D12 antibodies for identifying the presence of such molecules) and their properties allows those skilled in the art to These molecules are used in a similar manner to the methods used in examining various diagnostic assays for cancer-related conditions. A typical example of a diagnostic method using 5 8P1D12 polynucleotides, polypeptides, reactive tau cells, and antibodies is similar to the use of well established diagnostic assays such as PSA polynucleotides, polypeptides, reactive T cells, and antibodies. These methods. For example, as PSA polynucleotides can be used as probes (for example in Northern analysis, see, for example, Sharief et al, Biochem. Mol. Biol. Int. 33(3): 567-74 (1994)) and Primers (for example, in PCR assays, see, for example, Okegawa et al, J. Urol. 163(4): 1 189-1190 (2000)) to observe PSA mRNA in a method for monitoring PSA overexpression or metastasis in prostate cancer. The presence and/or amount of the 58P1D12 polynucleotide described herein can be used in the same manner to detect 58P1D12 overexpression or metastasis in ovarian cancer and other cancers that exhibit this gene. Alternatively, just as PSA polypeptides can be used to generate antibodies specific for PS A, such antibodies can then be monitored for excessive expression of PSA proteins (see, eg, Stephan et al, Urology 55(4):560-3 (2000)) or prostate cells. For the transfer (see, for example, Alanen et al, Pathol. Res. Pract. 192(3): 233-7 (1996)) for the observation of the presence and/or amount of PSA protein, 142769.doc-133 described herein. - 201021828 The 5 8P 1D12 polypeptide can be used to produce anti-specific expression or metastasis of 58P1D12 in cells for detecting ovarian cells and other cancers exhibiting this gene, since metastasis includes cancer cells from the source organ (such as the lungs) Or ovaries #) move to different areas of the body (such as lymph nodes), so evidence of transfer can be provided using a test to check for the presence of cells expressing 58P1D12 polynucleotides and/or polypeptides in a biological sample. For example, when a biological sample that normally does not contain tissue of 58P1D12 expressing cells contains 58 piD12 expressing cells, this finding indicates metastasis. Or '58P1D12 poly-picuric acid and/or polypeptide can be used to provide evidence of cancer, for example, when a cell in a biological sample that does not exhibit 58P1Di2 under normal conditions or exhibits 58P1D12 to varying degrees exhibits 58P1D12 or has a stronger expression of 58P1D12 (See, for example, the 58P1D12 performance in the cancer samples listed in Table I and in the patient samples shown in the figures). In such assays, those skilled in the art may further desire to generate additional evidence of the transfer by testing whether the biological sample A has a second tissue restriction marker (other than 5 8 P1D12). The use of immunohistochemistry to identify the presence or absence of a 58P1D12 polypeptide in a tissue section can indicate a change in the state of certain cells within the tissue. It is well understood in the art that the ability of an antibody to localize to a polypeptide expressed in a cancer cell is a diagnostic disease, stage of disease, development, and/or tumor invasiveness. This antibody also detects changes in the distribution of polypeptides in cancer cells compared to corresponding non-malignant tumor tissues. 5 8P1D12 polypeptides and immunogenic compositions are also suitable for observing disease states. 142769.doc -134- 201021828 The phenomenon of subcellular protein localization changes. Changes in cells from normal to disease state result in changes in cell morphology and are usually accompanied by changes in subcellular protein localization/distribution. For example, cell membrane proteins that are expressed in a polarized manner in normal cells can change in disease, resulting in a protein that is distributed non-polarly throughout the cell surface. The phenomenon of subcellular protein localization changes under disease conditions has been demonstrated by the use of immunohistochemical methods via MUC 1 and Her2 protein expression. In addition to some nuclear localization of glycoproteins, normal epithelial cells also have a typical apical distribution of MUC 1 ® , while malignant lesions often exhibit a non-polar staining pattern (Diaz et al., The Breast Journal, 7; 40-45 (2001) Zhang et al, Clinical Cancer Research, 4; 2669-2676 (1998); Cao et al, The Journal of Histochemistry and Cytochemistry, 45: 1547-1557 (1997)). In addition, normal breast epithelium is negative for Her2 protein, or only shows basolateral distribution, while malignant cells can express this protein on the entire cell surface (De Potter et al, International Journal of Cancer, 44; 969-974 (1989) McCormick et al., 117; 935-943 (2002)). Alternatively, the distribution of the protein can vary from surface location only to include diffuse cytoplasmic manifestations under diseased conditions. This example can be found in MUCl (Diaz et al, The Breast Journal, 7: 40-45 (2001)). Changes in the location/distribution of proteins in cells, as detected by immunohistochemistry, can also provide important information about the convenience of certain therapeutic modalities. Finally, this point is illustrated by the fact that the protein can be located in the cells in normal tissues but on the cell surface in malignant cells. 142769.doc -135- 201021828 Cell surface localization makes the cells beneficial for antibody-based diagnosis and treatment. Treatment. The 58P1D12 protein and its associated immune response are extremely useful when this change in protein localization occurs for 58P1D12. The use of the 5 8P1D12 composition allows those skilled in the art to make important diagnostic and therapeutic decisions. When a polypeptide is present in a tissue that does not normally produce 58P1D12, the immunohistochemical reagent specific for 58P1D12 can also be used to detect metastasis of a tumor exhibiting 58P1D12. Thus, the 58P1D12 polypeptide and antibodies produced by its immune response can be used in a variety of important settings, such as diagnostic, prognostic, prophylactic, and/or therapeutic purposes known to those skilled in the art. Furthermore, the 58P1D12-related protein or polynucleotide of the present invention can be used to treat a pathological condition characterized by overexpression of 58P1D12. For example, the amino acid sequence or nucleic acid sequence of Figure 1 or a fragment of either can be used. To generate an immune response against the 58P1D12 antigen. An antibody or other molecule that reacts with 58P1D12 can be used to modulate the function of this molecule and thereby provide a therapeutic benefit. XI.A.) Inhibition of 58P1D12 Protein Function The present invention includes various methods and compositions for inhibiting the binding of 58P1D12 to its binding partner or inhibiting the binding of 58P1D12 to other proteins, as well as methods for inhibiting the function of 58P1D12. XI.B.) Inhibition of 58P1D12 via intracellular antibodies In one method, a recombinant vector encoding a single-chain antibody that specifically binds to 58P1D12 is introduced into 58P1D12 expressing cells via gene transfer technology 142769.doc • 136·201021828. Thus, the encoded single-stranded anti-58P1D12 antibody is expressed in the cell to bind to the 5 8 P1D12 protein and thereby inhibit its function. Methods for engineering such single-chain antibodies in cells are well known. These intracellular antibodies (also referred to as "intracellular antibodies") are specifically directed to specific metabolic regions within the cell to provide control at the concentration of inhibitory therapeutic activity. This technique has been successfully applied in this technology (for a review of 's Qing, see Richardson and Marasco, 1995, TIBTEC, Vol. 13). Intracellular antibodies have been shown to substantially eliminate the expression of other abundant cell surface receptors (see, for example, Richards〇n et al., ® I" 5, Pro. Natl. Acad. Sci. USA 92: 3137-3 141; Beerli et al. Human, 1994, J. Biol. Chem. 289: 23931-23936; Deshane et al. '1994, Gene Ther. 1: 332-337). Single-chain antibodies comprise the variable domains of the heavy and light chains joined by a flexible linker polypeptide and are expressed as a single polypeptide. The single bond antibody is expressed as needed in the form of a single-chain variable region fragment joined to the light chain constant region. Well-known intracellular signaling signals are engineered into recombinant parameric nucleotide vectors encoding such single chain antibodies to allow intracellular antibodies to be accurately targeted to the desired intracellular metabolic region. For example, intracellular antibodies targeting the endoplasmic reticulum (ER) have been engineered
造以合併前導肽及視需要C末端ER留置信號,諸wKDEL 胺基酸基元。旨在於核内發揮活性之胞内抗體經工程改造 以包括核定位信號。脂質部分與胞内抗體接合,以便將胞 内抗體系留至質膜之細胞溶質侧。胞内抗體亦可經靶向以 在細胞溶質中發揮功能。舉例而言,細胞溶質胞内抗體用 於將因子螯合於細胞溶質内,從而防止其轉運至其天然細 胞終點。 142769.doc 137- 201021828 在一貫施例中,胞内抗體用於俘獲核内之58P1D12,從 而阻止其在核内之活性。核靶向信號經工程改造入該等 5 8P1D12胞内抗體内’以便實現所要無向。該等58ρΐΓ)12 胞内抗體經設計以特異性結合特定58Ρ1Γ)12結構域。在另 一實施例令’特異性結合58P1D12蛋白質之細胞溶質胞内 抗體用於防止58P1D12到達核,從而防止其在核内發揮任 何生物活性(例如防止58P1D12與其他因子形成轉錄複合 物)。 XI.C.)經由重組蛋白質抑制58P1D12 在另一方法中,重組分子結合58P1Di2且從而抑制 5 8P1D12功能。舉例而言,該等重組分子防止或抑制 58P1D12接近/結合其結合搭配物或與其他蛋白質結合。該 等重組分子例如可含有58P1D12特異性抗體分子之反應性 部分。在一特定實施例中,58P1D12結合搭配物之 5 8P1D12結合域經工程改造入二聚體融合蛋白質内,其中 該融合蛋白質包含兩個與人類IgG(諸如人類IgG丨)之Fc部分 連接的58P1D12配體結合域。此IgG部分可含有例如CH2及 CH3結構域及鉸鏈區’而不含有C%結構域。此二聚體融 合蛋白質以可溶性形式投與罹患與表現58P1D12相關之癌 症的患者,其中該二聚體融合蛋白質特異性結合58P1D12 且阻斷5 8 P1D12與結合搭配物之相互作用。使用已知的抗 體連接技術將該等二聚體融合蛋白質進一步組合成多聚體 蛋白質。 XI.D.)抑制58P1D12轉錄或轉譯 142769.doc .138· 201021828 本發明亦包含用於抑制58P1D12基因轉錄之多種方法及 組合物。類似地’本發明亦提供用於抑制mRNA 轉譯成蛋白質之方法及組合物。 在一方法中,抑制58P1D12基因轉錄之方法包含將 58P1D12基因與58P1D12反義聚核苷酸接觸。在另一方法 中,抑制58P1D12 mRNA轉譯之方法包含將58P1D12 mRNA與反義聚核苷酸接觸。在另一方法中,使用 58P1D12特異性核酶分裂581>1012訊息物,從而抑制轉 ® 譯。該等基於反義及核酶之方法亦可針對58P1D12基因之 δ周控區’諸如58P1D12啟動子及/或強化子元件。類似地, 能夠抑制58P1D12基因轉錄因子之蛋白質用於抑制 58P1D12 mRNA轉錄。適用於上述方法的多種聚核苷酸及 組合物已描述如上。使用反義及核酶分子抑制轉錄及轉譯 已於此項技術中熟知。 藉由干擾58P1D12轉錄活化來抑制58P1D12轉錄的其他 _ 因子亦適用於治療表現58P1D12之癌症。類似地,干擾 58P1D12加工之因子適用於治療表現58piD12之癌症。使 用該等因子之癌症治療方法亦屬於本發明之範疇内。 ΧΙ·Ε.)對於治療策略之一般考量 可使用基因轉移及基因治療技術將治療性聚核苷酸分子 (亦即編碼胞内抗體及其他58P1D12抑制性分子之反義及核 酶聚核苷酸)傳遞至合成58P1D12之腫瘤細胞。多種基因治 療方法於此項技術中已知。使用該等基因治療方法可將編 碼能夠干擾58P1D12轉錄之58P1D12反義聚核苷酸、核 142769.doc -139- 201021828 酶、因子的重”料傳遞至標m細胞。 :將上述治療方法與多種手術化學療法或放射療法方 案中之任-種組合。本發m療方法容許制低劑量之 化學療法(或其他療法)及/或更少次數的投藥,此對於所有 患者且尤其對於不能很好耐受化學治賴毒性之患者為_ 優點。 特疋組口物(例如反義分子、核酶、胞内抗體)或該等址 合物之組合之抗腫瘤活性可使用多種活體外及活體内檢定 ^統評估。評估治療活性之活體外檢定包括細胞生長檢〇 定、軟瓊脂檢定及指巾腫瘤促進活性之其他檢定'能夠測 定治療性組合物抑制58P1D12與結合搭配物結合之程度的 結合檢定等。 58P1D12治療性組合物之活體内效應可用適當的動物模 型評估。舉例而言,可使用異種卵巢癌模型,其中將人類 即巢癌外植體或繼代異種移植組織引入免疫不全之動物 中,諸如裸小鼠或SCID小鼠(Klein等人,1997,Nature Medicine 3: 402-408)。舉例而言,PCT專利申請案w〇 〇 98/16628及美國專利6,107,540描述人類前列腺癌之多種異 種移植模型,該等模型能夠重演原發腫瘤之出現、微轉移 及晚期疾病之成骨細胞轉移特徵之形成。可使用對腫瘤形 成之抑制、腫瘤消退或轉移及其類似過程進行量測的檢定 預測功效。 評估細胞凋亡加快之活體内檢定適用於評估治療性組合 物。在一實施例中,可檢查經治療性組合物治療之具有腫 142769.doc -140- 201021828 瘤之小鼠的異種移植物甲是否存在細胞凋亡焦點且與未經 治療之具有異種移植物之對照小鼠比較。經治療之小鼠之 腫瘤中存在細胞凋亡焦點的程度表明組合物之治療功效。 用於實施上述方法之治療性組合物可調配成包含適用於 所要傳遞方法之載劑的醫藥組合物。適當載劑包括與治療 性組合物組合時保持該治療性組合物之抗腫瘤功能且與患 者免疫系統通常無反應性的任何物質。實例包括(但不限 於)多種標準醫藥載劑中之任一種,諸如無菌填酸鹽緩衝 罾鹽水溶液、抑菌水及其類似物(一般參見Remingt〇n,s Pharmaceutical Sciencea 16版,Α· 〇sal.編,i98〇)。 治療性調配物可溶解且可經由能夠將治療性組合物傳遞 至腫瘤部位之任何途徑投與。潛在有效的投藥途徑包括 (但不限於)靜脈内、非經腸、腹膜内、肌肉内、腫瘤内、 皮内'器官内、正位及其類似途徑。用於靜脈内注射之較 佳調配物包含溶於經防腐處理之抑菌水、未經防腐處理之 參無菌水及/或稀釋於含有〇.9%注射用無菌氯化鈉(usp)之聚 氯乙烯或聚乙烯袋中的治療性组合物。治療性蛋白質製劑 可凍乾,且可以無菌粉末之形式較佳在真空下儲存且接著 於抑菌水(含有例如苄醇防腐劑)或於無菌水中復水後再注 射。 使用上述方法治療癌症之劑量及投藥方案隨方法及標靶 癌症而變,且通常視此項技術中所瞭解的多種其他因:而 定。 ’、 XII.)鑑別、表徵及使用58P1D12調節劑 142769.doc • 141 - 201021828 鐘別及使用調節劑之方法 在一實施例中’執行篩檢以鑑別誘導或抑制特定表現分 布、抑制或誘導特異性途徑(較佳由此產生相關表現型)的 調節劑。在另一實施例中,經由鑑別在特定狀態下重要的 差異表現基因,執行篩檢以鑑別使個別基因之表現改變 (增加或減少)的調節劑。在另一實施例中,執行篩檢以鑑 別使差異表現基因之表現產物之生物功能改變的調節劑。 此外,經由鑑別在特定狀態下重要的基因,執行篩檢以鑑 別、纟α合及/或調基因產物之生物活性的藥劑。 此外’對回應於候選藥劑而經誘導之基因執行篩檢。鑑 別調節劑(抑制癌症表現模式從而產生正常表現模式之調 節劑,或使基因表現如同正常組織中一般之癌症基因調節 劑)之後’執行篩檢以鑑別回應於藥劑得到特異性調節的 基因。在正常組織與經藥劑治療之癌症組織之間進行表現 分布對比’揭露在正常組織或癌症組織中不受到表現、但 在經藥劑治療之組織中受到表現的基因,且反之亦然。藉 由本文中針對癌症基因或蛋白質所述之方法鑑別並使用該 等藥劑特異性序列。特定而言,使用該等序列及其所編碼 之蛋白質標諸或鐘別經藥劑治療之細胞。此外,針對藥劑 誘導蛋白質產生抗體,且該等抗體用於將新穎治療劑靶向 經治療之癌症組織樣本。 調節劑相關鑀別及篩檢檢定: 基因表現相關檢定 篩檢檢定中係使用本發明之蛋白質、核酸及抗體。篩檢 142769.doc -142- 201021828 檢定中係使用癌症相關蛋白質、抗體、核酸、經修飾之蛋 白質及含有該等序列之細胞,諸如評估候選藥物對「基因 表現分布」、多肽表現分布或生物功能變化的影響。在一 個實施例令,較佳聯合高通量篩檢技術使用表現分布,以 容許對經候選藥劑治療之後的表現分布基因進行監測(例 如 DaWs,GF等人,j Biol Screen 7:69 (2〇〇2) ; 21〇1^仙等 人,Science 279:84_8 (1998) ; Heid,Gen_ ^ 6:986 94, 1996)〇 , 篩檢檢定中係使用癌症蛋白質、抗體、核酸、經修飾之 蛋白質及含有天然或經修飾之癌症蛋白質或基因的細胞。 亦即,本發明包含對調節本發明之癌症蛋白質之癌症表現 型或生理功能的組合物進行篩檢的方法。此可針對基因本 身執行或藉由評估候選藥物對「基因表現分布」或生物功 能之影響來執行。在-個實施例中,較佳聯合高通㈣檢 技術係使用表現分布,以容許在經候選藥劑治療之後進行 Is測,參見Zlokamik,同上。 針對本發明之基因及蛋白質執行多種檢定。在個別核酸 W白質級別下進行檢定H經由則在癌症中上調 的特定基因,篩檢測試化合物調節基因表現之能力或與本 發明之癌症蛋白質的結合。本上下文中之「調節」包括基 因表現之增強或減弱。較佳調節量視正常組織對比經歷癌 症之組織中之基因表現的最初變化而定,其中變化為至少 10/。較佳50/〇、更佳10〇_3〇〇% ’且在有些實施例中為 3〇(M_%或大於1000%。因此,若與正常組織相比,基 142769.doc -143- 201021828 因在癌症組織中呈現4倍增幅,則通常需要約四倍之降 幅;類似地,若與正常組織相比,基因在癌症組織中減少 10倍’則藉由測試化合物之表現通常需要1G倍增幅之目標 值。見於癌症中可加重基因表現類型的調節劑亦可使用, 例如作為進一步分析中之經上調的標靶。 使用核酸探針及基因表現量之量化監縣因表現之量, 或者例如經由使用針對癌症蛋白質之抗體及標準免疫檢定 法監測基因產物本身。蛋白質組研究及分離技術亦容許對 表現進行量化。 鐘別調節基因表現之化合物的表現監測 在實施例中’ |5J時監測多個實體的基因表現監測,亦 即表現分布。該等分布通常包括圖〗之基时之一或多 者。在β玄實施例令,例如將癌症核酸探針附著於生物晶片 以福測並量化特定細胞中之癌症序列。或者可使用PCR。 因此’可使用例如微量滴定盤之m中將引子分 配於預定孔中。接著可執行PCR反應並分析各孔。 執仃表現監測以鑑別調節一或多種癌症相關序列(例如 圖:中所示之聚㈣酸序列)之表現的化合物。通常,將測 式調節在刀析之别添加至細胞中。此外’亦提供可對調 節癌症、調節本發明之癌症蛋白質、結合本發明之癌症蛋 白質或干擾本發明之癌症蛋白質與抗體或其他結合搭配物 結合的藥劑進行鑑別的篩檢法。 在一實施例中,高通量筛檢法包括提供含有大量潛在治 療哇化D物(候選化合物)之文庫。接著以一或多種檢定篩 142769.doc 201021828 檢該等「組合化學文庫」以鑑別呈現所要特徵活性之彼等 文庫成員(特定化學種類或亞類由此鑑別的化合物可用 作習知「主導化合物」、篩檢用化合物或治療劑。 在某些只施例中,篩檢潛在調節劑之組合文庫是否能夠 結合癌症多肽或調節活性。習知地,藉由鑑別具有某些所 要特性或活性(例如抑制活性)的化合物(稱為「主導化合 物」)、產生主導化合物之變異體並評估彼等變異體化合 物之特性及活性來產生具有有用特性的新穎化學體。此分 ^ 析通常使用高通量篩檢(HTS)方法。 如上所述,可方便地使用基因表現監測來測試候選調節 劑(例如蛋白f、核酸或小分子)。添加候選藥劑並將細胞 培育-段時間之後,將例如含有待分析之標乾序列的樣本 添加至生物晶片中。 需要時,使用已知技術製備標靶序列。舉例而言,使用 已知的溶胞緩衝液、電穿孔法等處理樣本以將細胞溶解, ❹其中視情況執行純化及/或擴增,諸如pCR。舉例而言,經 由與核苦酸共價連接之標記執行活體外轉錄。冑常用生物 素-FITC或PE或用Cy3或cy5標記核酸。 標乾序列可用例如螢光信號、化學發光信號、化學信號 或放射性信號標記,以提供價測標乾序列特異性結合探針 的方式。標纪亦可為酶,諸如鹼性磷酸酶或辣根過氧化 酶,其隨適當文質-起提供時產生可偵測的產物。或者, 標記為結合、但不被酶催化或改變的經標記之化合物或小 分子,諸如酶抑制劑。標記亦可為特異性結合抗生蛋白鏈 142769.doc •145· 201021828 菌素之部分或化合物,諸如抗原決定基標記或生物素。以 生物素為例,如上所述將抗生蛋白鏈菌素標記,從而提供 針對結合標無序列之可偵測信號。未結合之經標記抗生蛋 白鏈菌素通常在分析之前移除。The wKDEL amino acid motif is combined with a leader peptide and optionally a C-terminal ER indwelling signal. Intracellular antibodies designed to be active in the nucleus are engineered to include nuclear localization signals. The lipid moiety is conjugated to the intrabody to retain the intracellular resistance system to the cytosol side of the plasma membrane. Intracellular antibodies can also be targeted to function in cytosol. For example, cytosolic intracellular antibodies are used to sequester a factor into a cytosol to prevent its transport to its natural cell end point. 142769.doc 137- 201021828 In a consistent application, intracellular antibodies were used to capture 58P1D12 in the nucleus, thereby preventing its activity in the nucleus. Nuclear targeting signals are engineered into these 5<8>P1D12 intracellular antibodies' to achieve the desired orientation. These 58ρΐΓ)12 intrabodies are designed to specifically bind to a specific 58Ρ1Γ12 domain. In another embodiment, a cytosolic intracellular antibody that specifically binds to the 58P1D12 protein is used to prevent 58P1D12 from reaching the nucleus, thereby preventing it from exerting any biological activity in the nucleus (e.g., preventing 58P1D12 from forming a transcription complex with other factors). XI.C.) Inhibition of 58P1D12 via Recombinant Protein In another method, the recombinant molecule binds to 58P1Di2 and thereby inhibits 58 P1D12 function. For example, the recombinant molecules prevent or inhibit 58P1D12 from approaching/binding its binding partner or binding to other proteins. Such recombinant molecules may, for example, contain a reactive portion of a 58P1D12 specific antibody molecule. In a specific embodiment, the 58P1D12 binding partner's 58P1D12 binding domain is engineered into a dimeric fusion protein, wherein the fusion protein comprises two 58P1D12 ligands linked to the Fc portion of a human IgG (such as human IgG丨) Body binding domain. This IgG portion may contain, for example, the CH2 and CH3 domains and the hinge region' without the C% domain. This dimeric fusion protein is administered in a soluble form to a patient suffering from a cancer associated with 58P1D12, wherein the dimeric fusion protein specifically binds to 58P1D12 and blocks the interaction of 58 P1D12 with the binding partner. The dimeric fusion proteins are further combined into a multimeric protein using known antibody ligation techniques. XI.D.) Inhibition of 58P1D12 Transcription or Translation 142769.doc .138· 201021828 The present invention also encompasses various methods and compositions for inhibiting the transcription of the 58P1D12 gene. Similarly, the invention also provides methods and compositions for inhibiting the translation of mRNA into a protein. In one method, a method of inhibiting transcription of the 58P1D12 gene comprises contacting a 58P1D12 gene with a 58P1D12 antisense polynucleotide. In another method, a method of inhibiting translation of 58P1D12 mRNA comprises contacting 58P1D12 mRNA with an antisense polynucleotide. In another method, the 58P1D12 specific ribozyme split 581 > 1012 message is used to inhibit translation. Such antisense and ribozyme based methods can also be directed to the delta-circumscribed region of the 58P1D12 gene such as the 58P1D12 promoter and/or enhancer element. Similarly, a protein capable of inhibiting the 58P1D12 gene transcription factor was used to inhibit the transcription of 58P1D12 mRNA. A variety of polynucleotides and compositions suitable for use in the above methods have been described above. The use of antisense and ribozyme molecules to inhibit transcription and translation is well known in the art. Other factors that inhibit the transcription of 58P1D12 by interfering with 58P1D12 transcriptional activation are also suitable for the treatment of cancers that exhibit 58P1D12. Similarly, the factor that interferes with 58P1D12 processing is suitable for treating cancers that exhibit 58 piD12. Cancer treatment methods using these factors are also within the scope of the invention. ΧΙ·Ε.) For the general consideration of therapeutic strategies, gene transfer and gene therapy techniques can be used to treat therapeutic polynucleotide molecules (ie, antisense and ribozyme polynucleotides encoding intracellular antibodies and other 58P1D12 inhibitory molecules). Transfer to tumor cells that synthesize 58P1D12. A variety of gene therapy methods are known in the art. Using these gene therapy methods, a heavy material encoding a 58P1D12 antisense polynucleotide, a nuclear 142769.doc-139-201021828 enzyme, and a factor capable of interfering with 58P1D12 transcription can be delivered to the target m cells. Any combination of surgical chemotherapy or radiation therapy. The present m treatment allows for low dose chemotherapy (or other therapy) and/or fewer doses, which is not good for all patients and especially for Patients who are resistant to chemotherapeutic toxicity are _ advantages. The anti-tumor activity of the sputum group (such as antisense molecules, ribozymes, intracellular antibodies) or a combination of these sites can be used in a variety of in vitro and in vivo Verification of the assay. In vitro assays for assessing therapeutic activity include cell growth assays, soft agar assays, and other assays for the expression of the tumor-promoting activity. A binding assay that determines the extent to which a therapeutic composition inhibits the binding of 58P1D12 to a binding partner. Et al. The in vivo effects of the 58P1D12 therapeutic composition can be assessed using an appropriate animal model. For example, a heterogeneous ovarian cancer model can be used, in which a person That is, nested cancer explants or secondary xenograft tissues are introduced into immunocompromised animals, such as nude mice or SCID mice (Klein et al, 1997, Nature Medicine 3: 402-408). For example, PCT patent application W〇〇98/16628 and U.S. Patent 6,107,540 describe various xenograft models of human prostate cancer that can reproduce the appearance of primary tumors, micrometastasis, and the formation of osteoblastic features of advanced disease. A test for predicting tumor formation inhibition, tumor regression or metastasis, and the like, predicts efficacy. An in vivo assay to assess accelerated apoptosis is suitable for assessing therapeutic compositions. In one embodiment, therapeutic properties can be examined. Whether the xenograft A of the mice treated with the composition treated with the 142769.doc-140-201021828 tumor had a focal focus of apoptosis and compared with untreated control mice with xenografts. The extent to which the focus of apoptosis is present in the tumor indicates the therapeutic efficacy of the composition. The therapeutic composition used to practice the above methods can be formulated to include A pharmaceutical composition for delivering a carrier of a method. Suitable carriers include any material that, when combined with a therapeutic composition, retains the antitumor function of the therapeutic composition and is generally non-reactive with the patient's immune system. Examples include (but not Limited to any of a variety of standard pharmaceutical carriers, such as sterile saline buffer aqueous buffer solutions, bacteriostatic water and the like (see generally Remingt〇n, s Pharmaceutical Sciencea 16 edition, Α·〇sal. ed., i98 The therapeutic formulation is soluble and can be administered via any route that is capable of delivering the therapeutic composition to the tumor site. Potentially effective routes of administration include, but are not limited to, intravenous, parenteral, intraperitoneal, intramuscular, intratumoral, intradermal, intraorganic, orthotopic, and the like. Preferred formulations for intravenous injection include sterile water dissolved in antiseptic treatment, sterile water without preservative treatment, and/or diluted in a mixture containing 〇.9% sterile sodium chloride for injection (usp) A therapeutic composition in a vinyl chloride or polyethylene bag. The therapeutic protein preparation may be lyophilized and preferably stored under vacuum in the form of a sterile powder and then reconstituted in bacteriostatic water (containing, for example, a benzyl alcohol preservative) or reconstituted in sterile water. Dosages and dosing regimens for treating cancer using the above methods vary with the method and target cancer, and are generally dependent on a variety of other factors known in the art. ', XII.) Identification, Characterization and Use of 58P1D12 Modulators 142769.doc • 141 - 201021828 Method of Monitoring and Using Regulators In one example, 'screening is performed to identify induction or inhibition of specific expression distribution, inhibition or induction of specificity A modulator of a sexual route, preferably resulting in a related phenotype. In another embodiment, screening is performed to identify modulators that alter (increase or decrease) the performance of individual genes by identifying differentially important genes that are important in a particular state. In another embodiment, screening is performed to identify modulators that alter the biological function of the expression product of the differentially expressed gene. Furthermore, by identifying genes that are important in a particular state, screening is performed to identify agents that are biologically active, 纟α-and/or modulate the biological activity of the gene product. In addition, screening is performed on genes induced in response to the candidate agent. Screening is performed to identify genes that are specifically regulated in response to the agent, after identifying modulators (inhibiting the pattern of cancer expression to produce a normal expression pattern of the modulator, or causing the gene to behave like a general cancer gene modulator in normal tissues). Performance distribution comparison between normal tissue and drug-treated cancer tissue 'Discloses genes that are not exhibited in normal tissues or cancer tissues but are expressed in tissues treated with the drug, and vice versa. Such agent-specific sequences are identified and used by the methods described herein for cancer genes or proteins. In particular, the sequences and the proteins encoded thereby are used to label or clock the cells treated with the agent. In addition, antibodies are produced against the agent-inducing proteins, and such antibodies are used to target novel therapeutic agents to a treated cancer tissue sample. Regulator-related screening and screening assays: Gene performance-related assays Proteins, nucleic acids, and antibodies of the invention are used in screening assays. Screening 142769.doc -142- 201021828 The use of cancer-associated proteins, antibodies, nucleic acids, modified proteins, and cells containing such sequences, such as assessing the "gene expression distribution", polypeptide distribution, or biological function of a candidate drug The impact of change. In one embodiment, a preferred combination high throughput screening technique uses a performance profile to allow monitoring of performance profile genes after treatment with a candidate agent (eg, DaWs, GF et al, j Biol Screen 7:69 (2〇) 〇2) ; 21〇1^仙 et al, Science 279:84_8 (1998) ; Heid, Gen_ ^ 6:986 94, 1996) 〇, screening proteins used in cancer proteins, antibodies, nucleic acids, modified proteins And cells containing natural or modified cancer proteins or genes. That is, the present invention encompasses a method of screening a composition for modulating the cancer phenotype or physiological function of the cancer protein of the present invention. This can be performed against the gene itself or by assessing the effect of the candidate drug on the "gene expression profile" or biological function. In one embodiment, it is preferred to use a performance profile in conjunction with a high pass (four) test technique to allow Is measurements to be taken after treatment with a candidate agent, see Zlokamik, supra. A variety of assays are performed for the genes and proteins of the invention. The assay is carried out at the individual white matter of the white protein, via a specific gene that is up-regulated in cancer, and the test compound is tested for its ability to modulate gene expression or to bind to the cancer protein of the present invention. "Adjustment" in this context includes an increase or decrease in the performance of the gene. The preferred amount of adjustment depends on the initial change in the expression of the gene in the normal tissue versus the tissue undergoing the cancer, with a change of at least 10/. Preferably, 50/〇, more preferably 10〇_3〇〇% 'and in some embodiments 3〇 (M_% or greater than 1000%. Therefore, if compared to normal tissue, base 142769.doc -143- 201021828 Because it shows a 4-fold increase in cancer tissue, it usually takes about four times the reduction; similarly, if the gene is reduced by 10 times in cancer tissue compared to normal tissue, then the performance of the test compound usually requires 1G doubling. Target value. Regulators that can be used to aggravate gene expression types in cancer can also be used, for example, as targets for up-regulation in further analysis. Use of nucleic acid probes and quantified gene expression to quantify the amount of performance of the county, or for example The gene product itself is monitored by using antibodies against cancer proteins and standard immunoassays. Proteomic research and isolation techniques also allow for quantification of performance. Monitoring of the performance of compounds that regulate gene expression in the examples is monitored in the example of ' |5J The monitoring of the gene expression of an entity, that is, the distribution of performance. These distributions usually include one or more of the bases of the graph. The needle is attached to the biochip to measure and quantify the cancer sequence in a particular cell. Alternatively, PCR can be used. Thus, the primer can be dispensed into a predetermined well using, for example, a microtiter plate. The PCR reaction can then be performed and the wells can be analyzed. Performance monitoring is performed to identify compounds that modulate the expression of one or more cancer-related sequences (eg, the poly(tetra) acid sequence shown in Figure:). Typically, the assay is added to the cells during knifeing. Also provided are screening methods for identifying cancer, modulating a cancer protein of the invention, binding to a cancer protein of the invention, or interfering with a pharmaceutical protein of the invention in combination with an antibody or other binding partner. In one embodiment, The high-throughput screening method includes providing a library containing a large number of potential therapeutic wow compounds (candidate compounds). The "combined chemical libraries" are then examined by one or more assay screens 142769.doc 201021828 to identify the ones that exhibit the desired characteristic activity. Such library members (specific chemical species or subclasses identified by this compound can be used as a conventional "dominant compound", screening compound Or a therapeutic agent. In certain embodiments, screening a combinatorial library of potential modulators is capable of binding to a cancer polypeptide or modulating activity. Conventionally, by identifying a compound having certain desired properties or activities (eg, inhibitory activity) (referred to as "dominant compounds"), produce variants of dominant compounds and evaluate the properties and activities of their variant compounds to produce novel chemicals with useful properties. This analysis typically uses high-throughput screening (HTS) Method As described above, gene expression monitoring can be conveniently used to test for candidate modulators (eg, protein f, nucleic acid or small molecule). Adding a candidate agent and incubating the cells for a period of time will, for example, contain the stem sequence to be analyzed The sample is added to the biochip. The target sequence is prepared using known techniques as needed. For example, the sample is treated with a known lysis buffer, electroporation, or the like to lyse the cells, where purification and/or amplification, such as pCR, is performed as appropriate. For example, in vitro transcription is performed by a label covalently linked to nucleotide acid.胄 Commonly used biotin-FITC or PE or labeled with Cy3 or cy5. The stem sequence can be labeled, for example, with a fluorescent signal, a chemiluminescent signal, a chemical signal, or a radioactive signal to provide a means by which the valence-labeled stem sequence specifically binds to the probe. The standard can also be an enzyme, such as an alkaline phosphatase or horseradish peroxidase, which, when provided with the appropriate quality, produces a detectable product. Alternatively, labeled compounds or small molecules, such as enzyme inhibitors, that are labeled but not catalyzed or altered by an enzyme. The label may also be a moiety or compound that specifically binds to the anti-protein chain 142769.doc • 145· 201021828, such as an epitope tag or biotin. Taking biotin as an example, streptavidin is labeled as described above to provide a detectable signal for the binding sequence without sequence. Unbound labeled anti-streptavidin is usually removed prior to analysis.
如熟習此項技術者所瞭解,該等檢定可為直接雜交檢定 或可包含「夾心檢定」,該等夾心檢定包括使用如以下美 國專利中一般性概述之多個探針:第5,6817〇2號、第 5’597,909 號、帛 5,545,730 號、帛 5,594,ιΐ7 號、第 5,591,584 號、帛 5,571,67〇 號、帛 5 58〇,731 號、第 5,57^70 號、帛 5,591,584 號、帛 5,624,謝號、第 5,635,352 號、帛 5,594,118 號、帛 5 359 1〇〇 號第 5,124,246號及第5,681,697號。在該實施财,一般而言, 如上所述製備絲核酸,且接著在容許形成雜交複合物之 條件下添加至包含複數個核酸探針之生物晶片中。 本發明使用多種雜交條件,包括如上所述的高度中度 及低度嚴格性條件。檢定料在嚴格性條件下進行,該等As will be appreciated by those skilled in the art, such assays may be direct hybridization assays or may include "sandwich assays" which include the use of multiple probes as generally outlined in the following U.S. patents: 5, 6817 2, 5'597, 909, 帛5,545,730, 帛5,594, ιΐ7, 5,591,584, 帛5,571,67〇, 帛5 58〇, 731, 5,57^70, 帛5,591 , No. 584, 帛 5, 624, Xie, No. 5, 635, 352, 帛 5, 594, 118, 帛 5 359 1 第 No. 5, 124, 246 and No. 5, 681, 697. In this implementation, in general, silk nucleic acids are prepared as described above and then added to a biochip comprising a plurality of nucleic acid probes under conditions permitting formation of a hybridization complex. The invention employs a variety of hybridization conditions, including highly moderate and low stringency conditions as described above. The verification material is carried out under strict conditions, such
嚴格性條件容許僅在標靶存在下形成標記探針雜交複合 物。嚴格性可藉由改變作為熱力學變數之步驟參數來控 制’該步驟參數包括(但不限於)溫度、甲㈣濃度、鹽濃 度、離液鹽濃度pH值、有機溶劑濃度等。如美國專利第 ,1 ’697號中叙所述,該等參數亦可用於控制非特異性 結合。因此,需要在更高嚴格性條件下執行某些步驟以減 少非特異性結合。 本文中所述之反應可以多種方式實現。反應組分可同時 142769.doc -146. 201021828 添加或以不同次序依序添加,較佳實施例如下文所述。此 外,該反應可包括多種其他試劑。料試劑包括可用於促 進最佳雜交及侧及/或減少非特異性或背景相互作用的 鹽、緩衝液、中性蛋白質(例如白蛋白)、清潔劑等。視樣 本製備方法及標乾純度而定’適當時亦可使用以其他方式 改良檢定效率之試劑’諸如蛋白酶抑制劑、核酸酶抑制 劑、抗微生物劑等。分析檢測數據,以判定個別基因之表 ❹ 現量及各種狀態之間表現量的變化,從而形成基因表現分 布0 生物活性相關檢定 本發明提供對調節本發明之癌症相關基因或蛋白質之活 性的化合物進行鑑別或篩檢的方法。該等方法包含將如以 上所定義之測試化合物添加至包含本發明之癌症蛋白質的 細胞中。該等細胞含有編碼本發明之癌症蛋白質的重組核 酸。在另一實施例中,對複數個細胞測試候選藥劑之^ 庫。 在一態樣中,在生理信號(例如激素、抗體、肽、抗 原、細胞因子、生長因[作用電位、藥理學藥劑(包: 化學治療劑)、放射、致癌物或其他細胞(亦即細胞'細胞接 觸υ存在或不#在下或先前或隨後曝露下對檢定進行評 估。在另-實例中,在細胞週期過程之不同階段進行測 定。以此方式鑑別調節本發明之基因或蛋白質的化人物 具有藥理活性的化合物能夠增強或干擾本發明之癌1蛋白 質之活性…㈣別’便對類似結構進行評佑以鑑別化合 142769.doc -147- 201021828 物之關鍵性結構特徵。 、、在實施例中,提供調節(例如抑制)癌細胞分裂之方 法;該方法包含投與癌症㈣齊!。在另一f施例中,提供 調節(例如抑制)癌症之方法;該方法包含投與癌症調節 劑、。在另-實施例中,提供治療患有癌症之細胞或個體的 方法;該方法包含投與癌症調節劑。 ◎ 在一實施例令,提供對表現本發明之基闼之細胞的狀離 進行調節的方法。如本文中所使用,狀態包含此項技術中 所接^:之參數’諸如細胞之生長、增殖、4活、功能、細 胞洞亡、农老、定位、酶活性、信號轉導#。在一實施例 中’癌症抑制劑為如上所述之抗體。在另一實施例中癌 症抑制劑為反義分子。如本文中所述的多種細胞生長、增 殖及轉移檢定已為熟f此項技術者所知。 9 鐘別調節则之高通1篩檢 鑑別適當調節劑的檢定可進行高通量篩檢。較佳檢定因 此對癌症基因轉錄之增強或抑制、多肽表現之抑制或增強 及多肽活性之抑制或增強進行偵測。 曰 在-實施例中,以高通量篩檢法評估之調節劑為蛋白 質,通常為天然存在之蛋白質或天然存在之蛋白質之片 段。因此使用例如含有蛋白質之細胞萃取4勿,或蛋白質細 胞萃取物之隨機或導向消化物。以此方式形成蛋白質文庫 供在本發明之方法中篩檢。在該實施例中尤其較佳者為細 菌、真菌、病毒及哺乳動物蛋白質之文庫,纟中後者較 佳’且人類蛋白質尤其較佳。特別有用的測試化合物係針 142769.doc •148- 201021828 對標纪所屬之蛋白質類別(例如酶之受質)或配體及受體。 使用軟瓊脂生長及集落形成法鐘別並表徵調節劑 正常細胞需要固體基質以附者並生長。當將細胞轉型 時’其失去此表現型並生長脫離基質。舉例而言,經轉型 的細胞可生長於經攪拌的懸浮培養物中或懸浮於半固體培 養基(諸如半固體或軟瓊脂)中。經轉型之細胞當經腫瘤抑 制基因轉染時,可使正常表現型再生並再次需要固體基質 以附著並生長。在檢定中使用軟瓊脂生長或集落形成鏗別 v 癌症序列之調節劑,該等調節劑當在宿主細胞中表現時, 抑制異常細胞增殖及轉型。調節劑將懸浮於固體或半固體 培養基(諸如瓊脂)中之宿主細胞之生長能力降低或消除。 懸浮檢定中用於軟緩脂生長或集落形成之技術描述於 Freshney, Culture of Animal Cells a Manual of BasicStringent conditions allow for the formation of labeled probe hybridization complexes only in the presence of the target. Stringency can be controlled by varying the step parameters as thermodynamic variables. The parameters of the step include, but are not limited to, temperature, alpha (tetra) concentration, salt concentration, chaotropic salt concentration, pH, organic solvent concentration, and the like. These parameters can also be used to control non-specific binding as described in U.S. Patent No. 1, '697. Therefore, certain steps need to be performed under higher stringency conditions to reduce non-specific binding. The reactions described herein can be accomplished in a variety of ways. The reaction components can be added simultaneously or sequentially in a different order, preferably as described below. In addition, the reaction can include a variety of other reagents. Reagents include salts, buffers, neutral proteins (e.g., albumin), detergents, and the like, which can be used to promote optimal hybridization and lateral and/or reduce non-specific or background interactions. Depending on the preparation method and the purity of the stem, 'reagents which improve the efficiency of the assay in other ways, such as protease inhibitors, nuclease inhibitors, antimicrobial agents and the like, may also be used as appropriate. The test data is analyzed to determine changes in the amount of expression of individual genes and the amount of expression between the various states, thereby forming a gene expression distribution. 0 Biological Activity Correlation Assay The present invention provides a compound which modulates the activity of a cancer-associated gene or protein of the present invention. A method of identification or screening. The methods comprise adding a test compound as defined above to a cell comprising a cancer protein of the invention. These cells contain a recombinant nucleic acid encoding a cancer protein of the invention. In another embodiment, a library of candidate agents is tested against a plurality of cells. In one aspect, in physiological signals (eg hormones, antibodies, peptides, antigens, cytokines, growth factors [potential potentials, pharmacological agents (packages: chemotherapeutics), radiation, carcinogens or other cells (ie cells) 'Cell contact υ presence or absence. The assay is evaluated under or prior or subsequent exposure. In another example, the assay is performed at different stages of the cell cycle process. In this way, the person regulating the gene or protein of the present invention is identified. Pharmacologically active compounds are capable of enhancing or interfering with the activity of the cancer 1 protein of the present invention. (4) Other structures are evaluated to identify key structural features of the compound 142769.doc-147-201021828. Providing a method of modulating (e.g., inhibiting) cancer cell division; the method comprising administering cancer (IV). In another embodiment, providing a method of modulating (e.g., inhibiting) cancer; the method comprising administering a cancer modulator In another embodiment, a method of treating a cell or an individual having cancer; the method comprising administering a cancer modulator. ◎ In an embodiment Providing a method of modulating the detachment of cells expressing the basis of the invention. As used herein, the state encompasses parameters of the art such as cell growth, proliferation, 4 activity, function, Cell death, aging, localization, enzymatic activity, signal transduction. In one embodiment, the 'cancer inhibitor is an antibody as described above. In another embodiment the cancer inhibitor is an antisense molecule. The various cell growth, proliferation and metastasis assays are known to those skilled in the art. 9 Qualitative adjustment of the Qualcomm 1 screening to identify appropriate modulators for high-throughput screening. Detection of enhancement or inhibition of cancer gene transcription, inhibition or enhancement of polypeptide expression, and inhibition or enhancement of polypeptide activity. In the examples, the modulators evaluated by high-throughput screening are proteins, usually natural. a fragment of a protein or a naturally occurring protein. Thus, for example, a protein-containing cell extract 4 or a random or directed digest of a protein cell extract is used. The library is screened in the method of the invention. Particularly preferred in this embodiment are libraries of bacterial, fungal, viral and mammalian proteins, the latter of which are preferred and human proteins are particularly preferred. Test compound needle 142769.doc •148- 201021828 The protein class (such as the substrate of the enzyme) or ligand and receptor to which the standard belongs. Use soft agar growth and colony formation method to identify and characterize the regulator. The matrix is attached and grows. When the cell is transformed, it loses this phenotype and grows out of the matrix. For example, the transformed cells can be grown in stirred suspension culture or suspended in semi-solid medium (such as half In solid or soft agar). Transformed cells, when transfected with a tumor suppressor gene, can regenerate normal phenotypes and again require a solid matrix to attach and grow. Soft agar growth or colony formation in assays is used to identify modulators of cancer sequences that, when expressed in host cells, inhibit abnormal cell proliferation and transformation. The modulator reduces or eliminates the growth ability of host cells suspended in a solid or semi-solid medium such as agar. The techniques used for suspension growth or colony formation in suspension assays are described in Freshney, Culture of Animal Cells a Manual of Basic
Technique (第 3版,1994)。亦參見Garkavtsev 等人(1996), 同上之方法章節。 ^ 評估接觸抑制及生長密度極限以鐘別並表徵調節劑 正常細胞在細胞培養物中通常以扁平及組織化模式生長 直至其接觸其他細胞。當細胞彼此接觸時,其受接觸抑制 且停止生長。然而,經轉型之細胞不受接觸抑制且繼續以 雜亂焦點生長至高密度。因此,經轉型之細胞生長成的飽 和密度高於相應正常細胞。此藉由形成細胞或焦點細胞之 亂取向單層而在形態上得以偵測到。或者,使用利用餘和 也'度之(3Η)-胸苷的標記指數量測生長密度極限,類似地, ΜΤΤ或阿拉馬藍(Alamar blue)檢定揭露細胞增殖能力及調 142769.doc •149· 201021828 卽劑影響其的能力。參見Freshney (1994),同上。經轉型 之細胞當經腫瘤抑制基因轉染時,可使正常表現型再生且 受接觸抑制而生長至較低密度。 在此檢定中’使用飽和密度之(3H)_胸苷的標記指教為量 測生長岔度極限之較佳方法。經轉型之宿主細胞可經癌症 相關序列轉染且在非限制培養基條件下以飽和密度生長2 4 小時。經(3h)-胸苷標記之細胞之百分比藉由合併的cpm測 定。 接觸不依賴性生長用於鑑別已引起異常細胞增殖及轉型 之癌症序列之調節劑。調節劑將接觸不依賴性生長減少或 消除,且使細胞恢復正常表現型。 評估生長因子或血清依賴性以鐘別並表徵調節谢 經轉型之細胞具有低於其正常對應物的血清依槙性(參 見例如Temin, J. Natl. Cancer Inst. 37:167-175 (1966);Technique (3rd edition, 1994). See also Garkavtsev et al. (1996), ibid. ^ Assessing Contact Inhibition and Growth Density Limits to Remember and Characterize Regulators Normal cells are typically grown in cell culture in a flat and organized manner until they contact other cells. When the cells are in contact with each other, they are inhibited by contact and stop growing. However, the transformed cells are not inhibited by contact and continue to grow to a high density with a messy focus. Therefore, the transformed cells grow to a higher density than the corresponding normal cells. This is morphologically detected by forming a disordered monolayer of cells or focal cells. Alternatively, the growth density limit is quantified using a marker that utilizes the balance of '(3Η)-thymidine, and similarly, the Alamar blue assay reveals cell proliferation capacity and 142769.doc • 149· 201021828 The ability of tincture to affect it. See Freshney (1994), ibid. When transformed cells are transfected with a tumor suppressor gene, normal phenotypes can be regenerated and grown to a lower density by contact inhibition. In this assay, the use of a label of saturated density (3H)-thymidine is a preferred method for measuring the growth mobility limit. The transformed host cells can be transfected with cancer-associated sequences and grown at saturation density for 24 hours under non-limiting media conditions. The percentage of cells labeled with (3h)-thymidine was determined by pooled cpm. Contact-independent growth is used to identify modulators of cancer sequences that have caused abnormal cell proliferation and transformation. The modulator reduces or eliminates contact-independent growth and restores the cells to normal phenotype. Growth factors or serum dependence are assessed to distinguish and characterize cells that regulate the transformation of the thank-through to have a serum dependency that is lower than their normal counterpart (see, eg, Temin, J. Natl. Cancer Inst. 37: 167-175 (1966) ;
Eagle等人,j Εχρ Med 131:836 879 (197〇)); , 同上)。此部分地係由於經轉型之細胞釋放多種生長因 子 A轉型之伯主細胞之生長因子或血清依賴程度可與對 照物相比。舉例而言,在各方法中監測細胞之生長因子或 血清依賴性以鑑別並表徵可調節本發明之癌症相關存列之 化合物。 使用踵瘤特異性標访含量鐘別並表徵調節制 腫瘤細胞釋放的某些因子(下文中為「腫瘤特異性標 誌」)量比其正常對應物要多。舉例而言,與正常骝細胞 相比’人類神經膠質瘤釋放的纖維蛋白溶酶原活北因子 142769.doc -150- 201021828 (PA)含量較高(參見例如 Gullino, Angiogenesis, Tumor Vascularization, and Potential Interference with Tumor Growth,在 Biological Responses in Cancer,第 178-184 頁 (Mihich (編)1985)中)。類似地,腫瘤細胞以高於其正常 對應物之含量釋放腫瘤血管生成因子(TAF)。參見例如 Folkman, Angiogenesis and Cancer, Sem. Cancer Biol. (1992),而bFGF係自内皮腫瘤釋放(Ensoli,B等人)。 量測該等因子釋放之多種技術描述於Freshney (1994), ® 同上。亦參見Unkless等人,J. Biol. Chem. 249:4295-4305 (1974) ; Strickland & Beers, J. Biol. Chem. 251:5694-5702 (1976) ; Whur等人,Br. J. Cancer 42:305 312 (1980);Eagle et al., j Εχρ Med 131:836 879 (197〇)); , ibid.). This is in part due to the fact that the transformed cells release a variety of growth factors or the degree of serum dependence of the primary cells transformed with the growth factor A can be compared to the control. For example, growth factors or serum dependence of cells are monitored in each method to identify and characterize compounds that modulate the cancer-associated list of the invention. The amount of certain factors that regulate tumor cell release (hereinafter referred to as "tumor-specific markers") is more abundant than that of normal counterparts using the tumor-specific marker content. For example, human gliomas release a higher level of plasminogen activity factor 142769.doc -150- 201021828 (PA) compared to normal sputum cells (see eg Gullino, Angiogenesis, Tumor Vascularization, and Potential). Interference with Tumor Growth, in Biological Responses in Cancer, pp. 178-184 (Mihich (ed.) 1985). Similarly, tumor cells release tumor angiogenic factor (TAF) at levels higher than their normal counterparts. See, for example, Folkman, Angiogenesis and Cancer, Sem. Cancer Biol. (1992), while bFGF is released from endothelial tumors (Ensoli, B et al). A variety of techniques for measuring the release of these factors are described in Freshney (1994), ® Ibid. See also Unkless et al, J. Biol. Chem. 249: 4295-4305 (1974); Strickland & Beers, J. Biol. Chem. 251:5694-5702 (1976); Whur et al., Br. J. Cancer 42:305 312 (1980);
Gullino, Angiogenesis, Tumor Vascularization, and Potential Interference with Tumor Growth,在 Biological Responses in Cancer,第 178-184 頁(Mihich (編)1985)中; Freshney, Anticancer Res. 5:1 11-130 (1985)。舉例而言, 在各方法中監測腫瘤特異性標誌含量以鑑別並表徵調節本 發明之癌症相關序列之化合物。 用於鑑別並表徵調節劑之基質縢(Matrigel)内侵入性 侵入基質膠或細胞外基質組分内之程度可用作鑑別並表 徵調節癌症相關序列之化合物的檢定。腫瘤細胞在惡性疾 病與細胞對基質膠或某種其他細胞外基質組分之侵入性之 間呈現正相關性。在此檢定中,致瘤細胞通常用作宿主細 胞。腫瘤抑制基因在該等宿主細胞中之表現使宿主細胞之 侵入性降低。可使用以下文獻中所述的技術:Canper Res. 142769.doc -151 - 201021828 1999; 59:6010 ; Freshney (1994),同上。簡而言之,藉由 使用塗有基質膠或某些其他細胞外基質組分的過濾器量測 宿主細胞之侵入程度。滲入凝膠内或穿透至過濾器之遠側 被評為侵入性’且以組織學方式依據細胞數目及移動距離 δ平疋,或藉由用125丨將細胞預標記並計算過濾器遠側或碟 底。卩之放射性來g平定。參見例如Fr e shney (1984),同上。 評估活«内踵瘤生長以鑑別並表徵調節劑 於轉殖基因或免疫抑制有機體中測試癌症相關序列對細 胞生長之影響。轉殖基因有機體係以此項技術已接受的多 種方式製備。舉例而言’形成基因剔除轉殖基因有機體, 例如哺乳動物,諸如小鼠,其中將癌症基因分裂或將癌症 基因插入。基因剔除轉殖基因小鼠係藉由將標諸基因或其 他異源基因經由同源重組方式插入小鼠基因組之内源癌症 基因位點來形成。該等小鼠亦可藉由用癌症基因之突變型 式取代内源癌症基因或藉由曝露於致癌物質而使内源癌症 基因突變來形成。 為製備轉殖基因嵌合動物(例如小鼠),可將DNA構築體 引入胚胎幹細胞之核内。將含有經新近工程改造之遺傳病 變的細胞注入宿主小鼠胚内,該胚再植入雌性接受者内。 該等胚中有些胚發育成具有生殖細胞之嵌合小鼠,該等生 殖細胞中有些來源於突變體細胞株。因此,藉由繁殖嵌合 小鼠有可能獲得含有所引入之遺傳病變的新穎小鼠品系 (參見例如 Capecchi 等人,Science 244:1288 (1989))。嵌合 小鼠可根據以下文獻獲得:2002年4月2曰頒布的美國專利 142769.doc -152- 201021828 6,365,797 ; 2000年8月22日頒布的美國專利6,107,540 ; Hogan等人,Manipulating the Mouse Embryo: A laboratory Manual, Cold Spring Harbor Laboratory (1988);及 Teratocarcinomas and Embryonic Stem Cells: A Practical Approach,Robertson 編,IRL Press, Washington, D.C., (1987)。 或者,可使用多種免疫抑制或免疫缺乏宿主動物。舉例 而言,遺傳無胸腺「裸」小鼠(參見例如Giovanella等人, ® J. Natl· Cancer Inst. 52:921 (1974))、SCID小鼠、切除胸腺 小鼠或經照射小鼠(參見例如Bradley等人,Br. J. Cancer 38:263 (1978) ; Selby等人,Br. J. Cancer 41:52 (1980))可 用作宿主。注入同基因宿主内的可移植腫瘤細胞(通常約 106個細胞)在高比例之情況下產生侵入性腫瘤,而類似來 源的正常細胞則不會。將表現癌症相關序列之細胞皮下或 正位注射於形成侵入性腫瘤之宿主中。接著將小鼠分組, 包括對照組及治療實驗組(例如經調節劑治療)。適當持續 ❹ 時間(較佳4-8週)之後,(例如依據體積或依據其兩個最大 尺寸,或體重)量測腫瘤生長並與對照組比較。統計學上 明顯減小(使用例如學生T檢驗(Student's T test))的腫瘤可 認為生長已受抑制。 鑑別並表徵調節劑之活髖外檢定 鑑別具有調節活性之化合物的檢定可在活體外執行。舉 例而言,首先將癌症多肽與潛在調節劑接觸並培育適當時 間,例如0.5至48小時。在一實施例中,藉由量測蛋白質 142769.doc •153- 201021828 或mRNA之含量在活體外測定癌症多肽含量。經由選擇性 結合癌症多肽或其片段之抗體,使用免疫檢定(諸如西方 墨點法、ELISA及其類似檢定)量測蛋白質含量。對於 mRNA之量劂,使用例如PCR、LCR或雜交檢定法(例如北 方雜交法、核糖核酸酶保護法、點潰墨法)之擴增為較佳 的。如本文中所述,蛋白質或mRNA之含量係使用經直接 或間接標記之偵測劑偵測,該等偵測劑例如經螢光或放射 性標記之核醆、經放射性或酶標記之抗體及其類似物。 ❹ 或者,可使用與報導基因(諸如螢光素酶、綠螢光蛋白 質、CAT或P_gal)可操作性連接之癌症蛋白質啟動子設計 報=基因系巍。通常將報導構築體轉染入細胞内。經潛在 調節劑處理之後,根據熟習此項技術者已知的標準技術量 測報導基因轉錄、轉譯或活性之量⑴心Μ,同上;Gullino, Angiogenesis, Tumor Vascularization, and Potential Interference with Tumor Growth, in Biological Responses in Cancer, pp. 178-184 (Mihich (ed.) 1985); Freshney, Anticancer Res. 5:1 11-130 (1985). For example, tumor specific marker levels are monitored in each method to identify and characterize compounds that modulate the cancer associated sequences of the invention. The degree of invasive invasion into the matrigel or extracellular matrix component within the Matrigel used to identify and characterize the modulator can be used as an assay to identify and characterize compounds that modulate cancer-associated sequences. Tumor cells are positively correlated between malignant disease and the invasiveness of cells to matrigel or some other extracellular matrix component. In this assay, tumorigenic cells are commonly used as host cells. The expression of tumor suppressor genes in such host cells reduces the invasiveness of the host cells. The techniques described in the following documents can be used: Canper Res. 142769.doc -151 - 201021828 1999; 59:6010; Freshney (1994), supra. Briefly, the degree of invasion of host cells is measured by using a filter coated with Matrigel or some other extracellular matrix component. Infiltrating into the gel or penetrating to the far side of the filter is rated as invasive 'and histologically depending on the number of cells and the distance traveled by δ, or by pre-labeling the cells with 125 并 and calculating the filter distally Or the bottom of the dish. The radioactivity of sputum is flat. See, for example, Fr e shney (1984), supra. Evaluation of live tumor growth to identify and characterize modulators The effects of cancer-associated sequences on cell growth were tested in transgenic or immunosuppressive organisms. The genetically modified organic system is prepared in a variety of ways that have been accepted by this technology. For example, a gene knockout gene organism is formed, such as a mammal, such as a mouse, in which a cancer gene is split or a cancer gene is inserted. The gene knockout transgenic mouse is formed by inserting a gene or other heterologous gene into the endogenous cancer gene locus of the mouse genome via homologous recombination. The mice can also be formed by mutating the endogenous cancer gene with a mutant form of the cancer gene or by mutating the endogenous cancer gene by exposure to a carcinogen. To prepare a transgenic chimeric animal (e. g., a mouse), the DNA construct can be introduced into the nucleus of the embryonic stem cell. Cells containing newly engineered genetic lesions are injected into the host mouse embryo, which is then implanted into the female recipient. Some of these embryos develop into chimeric mice with germ cells, some of which are derived from mutant cell lines. Therefore, it is possible to obtain a novel mouse strain containing the introduced genetic lesion by breeding a chimeric mouse (see, for example, Capecchi et al., Science 244: 1288 (1989)). Chimeric mice can be obtained according to the following documents: U.S. Patent No. 142, 769. doc-152-201021828, 6, 365, 797, issued on Apr. 2, 2002; U.S. Patent No. 6,107,540 issued on August 22, 2000; Hogan et al., Manipulating the Mouse Embryo: A Laboratory Manual, Cold Spring Harbor Laboratory (1988); and Teratocarcinomas and Embryonic Stem Cells: A Practical Approach, edited by Robertson, IRL Press, Washington, DC, (1987). Alternatively, a variety of immunosuppressive or immunodeficient host animals can be used. For example, genetically athymic "naked" mice (see, eg, Giovanella et al, ® J. Natl. Cancer Inst. 52: 921 (1974)), SCID mice, resected thymic mice, or irradiated mice (see For example, Bradley et al, Br. J. Cancer 38: 263 (1978); Selby et al, Br. J. Cancer 41: 52 (1980)) can be used as a host. Transplantable tumor cells (usually about 106 cells) injected into an isogenic host produce invasive tumors at a high rate, whereas normal cells like the source do not. Cells expressing a cancer-associated sequence are injected subcutaneously or orthotopically into a host that forms an invasive tumor. The mice are then grouped, including the control group and the treatment experimental group (eg, treated with a modulator). After appropriate ❹ time (preferably 4-8 weeks), tumor growth was measured (e.g., by volume or according to its two largest sizes, or body weight) and compared to the control group. A statistically significant reduction (using a Student's T test, for example) can be considered to have been inhibited. Live Hip Identification to Identify and Characterize Regulators The assay to identify compounds with modulatory activity can be performed in vitro. For example, the cancer polypeptide is first contacted with a potential modulator and incubated for a suitable period of time, for example, from 0.5 to 48 hours. In one embodiment, the cancer polypeptide content is determined in vitro by measuring the amount of protein 142769.doc • 153-201021828 or mRNA. The protein content is measured using an immunoassay (such as Western blotting, ELISA, and the like) via an antibody that selectively binds to the cancer polypeptide or a fragment thereof. For the amount of mRNA, amplification using, for example, PCR, LCR or hybridization assays (e.g., Northern hybridization, ribonuclease protection, and dot blotting) is preferred. As described herein, the amount of protein or mRNA is detected using directly or indirectly labeled detection agents such as fluorescent or radiolabeled nuclear, radioactive or enzymatically labeled antibodies and analog. Alternatively, a cancer protein promoter design operably linked to a reporter gene (such as luciferase, green fluorescent protein, CAT or P_gal) can be used. The reporter construct is typically transfected into the cell. After treatment with a potential modulator, the amount of transcription, translation or activity of the gene is reported according to standard techniques known to those skilled in the art (1) palpitations, ibid;
Gonzalez, J. & Negulescu, P. Curr. 〇pin. Biotechnol. 1998· 9:624)。 ❹ 所$ #個別基因及基因產物執行活體外筛檢。亦 即’經由鐘冽在特定狀離 其田々* 要的特定差異表現基因,對 二土 1物本身之表現的調節劑進行筛檢。 檢在Si:例中’對特異性基因之表現的調節劑進行筛 节D、嘥僅一種基因或幾種基因之表現。在另一杂 例中,將篩凇設計成 貝 合物。接著評估^ “无發現、、,。合差異表現蛋白質之化 外,初始候遥化= 節差異表現活性之能力。* 以更好地㈣結構活性=別,便可對變異雜進一步筛檢 142769.doc -154- 201021828 鑑別並表徵調節劑之結合檢定 在本發明之結合檢定中,一般使用經純化或經分離之本 發明之基因產物。舉例而言,針對本發明之蛋白質產生抗 體,且進行免疫檢定以測定蛋白質之量及/或位置。或 者’檢定中使用包含癌症蛋白質之細胞。 因此,該等方法包含:將本發明之癌症蛋白質與候選化 合物(諸如配體)組合;及對該化合物與本發明之癌症蛋白 質之結合進行測定。較佳實施例使用人類癌症蛋白質;亦 可開發並使用人類疾病之動物模型。此外,如熟習此項技 術者所瞭解,亦可使用其他類似的哺乳動物蛋白質。此 外,在有些實施例中,使用癌症蛋白質之變異體或衍生 物。Gonzalez, J. & Negulescu, P. Curr. 〇pin. Biotechnol. 1998· 9:624). ❹ Examined in vitro screening of $# individual genes and gene products. That is, the regulators that express the performance of the two soils themselves are screened by the specific differential expression genes that are required to be separated from their fields by the bells. In the Si: Example, the modulator of the expression of a specific gene is screened for D, 嘥 only one gene or several genes. In another example, the sieve is designed as a bead. Then evaluate ^ "No discovery, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , .doc -154- 201021828 Binding assay for identifying and characterizing modulators In the binding assays of the invention, purified or isolated gene products of the invention are generally used. For example, antibodies are produced against the proteins of the invention, and Immunoassay to determine the amount and/or position of the protein. Or 'in the assay, a cell comprising a cancer protein is used. Thus, the methods comprise: combining a cancer protein of the invention with a candidate compound (such as a ligand); and the compound The determination is carried out in combination with the cancer protein of the present invention. Preferred embodiments use human cancer proteins; animal models of human diseases can also be developed and used. Furthermore, other similar mammals can be used as known to those skilled in the art. Proteins. Further, in some embodiments, variants or derivatives of cancer proteins are used.
-般而言’本發明之癌症蛋白質或配體非擴散地與不溶 性支撲物結合。支撐物可為例如具有經隔離之樣本接收區 的支撐物(微量滴定盤、陣列等)^不溶性支撐物可由可結 合該等組合物的任何組合物製成,易與可溶物質分離,且 另外與總體篩檢方法相容。料㈣物之表面可為固體或 呈多孔狀且可呈任何便利形狀。 適當不溶性支㈣之實例包括微量滴定盤、陣列、膜及 珠粒。該等支擇物通常由玻璃、塑料(例如聚苯乙婦)、多 醣、耐綸(nyl〇n)、石肖化纖維或TeflonTM等製成。微量滴定 盤及陣列由於可❹少量試劑及樣本同時執行多個檢定而 特別方便。組合物與支撐物結合之特定方式並不關鍵,只 要其與本發明之試劑及總體方法相容、维持組合物之活性 142769.doc -155- 201021828 且不擴散'較佳結合友法包括使用當蛋白質附著於支撐物 時不將配體結合位點或活化序列空間阻斷的抗體;直接結 合「黏性」或離子支撑物;化學交聯;在表面上合成蛋白 質或藥劑等。蛋白質或配體/結合劑結合支撐物之後藉 由洗滌移除過量的未结合物質。接著可經由用牛血清白蛋 白(BSA)、酪蛋白或其他無害蛋白質或其他部分培育來阻 斷樣本接收區。 一旦本發明之癌症蛋白質結合支撐物,則向檢定中添加 測試化合物。或者,使候選結合劑結合支撐物並接著添加 本發明之癌症蛋白質。結合劑包括特異性抗體、經筛檢化 學文庫所鏗別之非天燃結合劑、肽類似物等。 尤其關注鑑別對於人類細胞具有低毒性之藥劑的檢定。 多種檢定可用於此目酌,包括增殖檢定、cAMp檢定、經 標記之活體外蛋白質_蛋白結合檢定、電泳遷移率變動檢 疋、蛋白質結合免疫檢定、功能性檢定(磷酸化檢定等)及 其類似檢定。 可以多種方式測定測試化合物(配體、結合劑、調節劑 等)與本發明之癌症蛋白質之結合。測試化合物可經標 記,且如下直接測定結合:例如,使本發明之癌症蛋白質 之全部或—部分附著泠固體支撐物;添加經標記之候選化 合物(例如螢光標記);洗去過量試劑;及測定標記是否存 在於固體支撐物上。視情況可使用多個阻斷及洗滌步驟。 在某些貫施例令,泫等組分僅一者經標記,例如本發明 之蛋白質或配體經標記。或者,將一種以上的組分用不同 142769.doc -156- 201021828 標記(例如針對蛋白質 m 記。亦可使用賴物之營光團)加以標 n親近成劑’例如泮減 鐘别並表微調節渐之競爭性結合以此置轉移试劑。 定'::::中,精由競爭性結合檢定經由「競爭劑」測 :發物」之;结合。競爭劑為結合標乾分子(例如 體X肽:症蛋白質)之結合部分。競爭劑包括諸如抗 μ人:&搭配物、配體等化合物。在某些情況下,測 β Γ:物與競爭劑之間的競爭性結合使測試化合物置換出 來:在-實施例中’測試化合物經標記。將測試化合物、 :爭劑或兩者添加至蛋白質中,維持足夠時間以容許結 。。在有利於最佳活性之溫度(通常在代與贼之間)下進 行培育。通常將培育期優化以例如有利於快速高通量筛 檢,通常在時之間便足夠。過量試劑一般加以移除 或洗去。接著添加第二組分,且跟蹤經標記之組分之存在 或不存在以指示結合。 〇 在一實施例中,首先添加競爭劑,接著添加測試化合 物。競爭劑置換表明測試化合物與癌症蛋白質結合且從而 能夠結合並潛在地調節癌症蛋白質之活性。在此實施例 中’任-組分皆可經標記。因此,例如,若競爭劑經標 記’則測試化合物洗滌後溶液中存在標記表明被測試化合 物置換。或者,若測試化合物經標記,則支樓物上存在標 §己表明發生置換。 在一替代實施例中,在培育及洗滌的同時首先添加測試 化合物,接著添加競爭劑。不存在競爭劑結合表明測試化 142769.doc •157- 201021828 合物以高於競爭劑的親和性結合癌症蛋白質。因此,若測 試化合物經標記,則支撐物上存在標記與缺少競爭劑^ 共同表明測試化合物結合並從而潛在地調節本發明之癌症 蛋白質。 因此’競爭性結合方法包含鐘別能夠調節本發明之癌症 蛋白質之活性的藥劑的差異篩檢法。在此實施例中,該等 方法包含在第-樣本中將癌症蛋白質與競爭劑組合。第二 m合物、癌症蛋白質及競爭劑。針對兩樣: 敎競甲劑之結合,且兩樣本之間存在結合之變化或差里 表明存在能夠結合癌症蛋白質且潛在調節其活了 樣本中之競爭劑之結合相對於第一複太X 同,則該藥劑能夠結合癌症蛋白質。 , 或者’使用差異篩檢法鑑別可結合 =經:一蛋白質的候選藥物。舉例而言癌: 位點相互合理藥物設計中以合成與彼 互作用的藥劑,該等藥劑—般不結合 蛋白質。此外,影響天然癌症蛋 L飾之 物亦藉由筛檢㈣M 性的該等候選藥 加以鐘別。增強或降低該4蛋白質之活性之能力來 檢定中可使用陽性對照及陰性對照。 本較佳至少一式三份進行以獲得統計學顯著任果 樣 本培育均在足以容許藥劑結合蛋白質結果。所有樣 之後’將樣本中的非特異性結合物間内進:。培育 之一般標記藥劑之量。舉例而言 ^測疋所結合 右使用放射性標記,則 142769.doc -158- 201021828 可器對樣本計數以測定所結合之化合物之量。 最& 了包括多種其他試劑。該等試劑包括用於促 = 蛋白質結合及/或減少非特異性或背景相互 ::试劑,如鹽、中性蛋白質(例如白蛋白)、清潔劑 可使用以其他方式改良衫效率的試劑,諸如蛋白 轉抑:劑、核酸酶抑制劑、抗微生物劑等。以提供所要結 合的次序添加各組分之混合物。In general, the cancer protein or ligand of the present invention binds non-proliferatively to insoluble proppants. The support can be, for example, a support having a quarantined sample receiving area (microtiter plate, array, etc.). The insoluble support can be made of any composition that can be combined with the compositions, easily separated from the soluble material, and additionally Compatible with the overall screening method. The surface of the material (4) may be solid or porous and may be in any convenient shape. Examples of suitable insoluble branches (4) include microtiter plates, arrays, membranes and beads. These alternatives are typically made of glass, plastic (e.g., polystyrene), polysaccharide, nylon (nyl〇n), stone sinusoidal fiber, or TeflonTM. Microtiter plates and arrays are particularly convenient due to the ability to perform multiple assays simultaneously with a small amount of reagents and samples. The particular manner in which the composition is combined with the support is not critical as long as it is compatible with the reagents and overall methods of the invention, maintains the activity of the composition 142769.doc -155-201021828 and does not diffuse 'better combination method includes use when An antibody that does not block the ligand binding site or the activation sequence when the protein is attached to the support; directly binds to "viscous" or ionic support; chemically crosslinks; synthesizes proteins or agents on the surface. The protein or ligand/binding agent is bound to the support and then the excess unbound material is removed by washing. The sample receiving area can then be blocked by incubation with bovine serum albumin (BSA), casein or other harmless proteins or other parts. Once the cancer protein of the invention binds to the support, the test compound is added to the assay. Alternatively, the candidate binding agent is bound to the support and then the cancer protein of the invention is added. The binding agent includes a specific antibody, a non-naturally-burning binding agent screened by a screening chemical library, a peptide analog, and the like. Particular attention is paid to the identification of agents that have low toxicity to human cells. A variety of assays can be used for this purpose, including proliferation assays, cAMp assays, labeled in vitro protein-protein binding assays, electrophoretic mobility shift assays, protein binding immunoassays, functional assays (phosphorylation assays, etc.) and the like. Verification. The binding of the test compound (ligand, binding agent, modulator, etc.) to the cancer protein of the present invention can be determined in a variety of ways. The test compound can be labeled and the binding assayed directly as follows: for example, attaching all or part of the cancer protein of the invention to a solid support; adding a labeled candidate compound (eg, a fluorescent label); washing away excess reagent; Determine if the label is present on the solid support. Multiple blocking and washing steps can be used as appropriate. In some embodiments, only one of the components is labeled, for example, the protein or ligand of the invention is labeled. Alternatively, more than one component may be labeled with a different 142769.doc -156-201021828 (for example, for the protein m. It may also be used as a camping light group). The progressively competitive binding is adjusted to set the transfer reagent. In the '::::, the fine is determined by the competitive combination test through the "competitive agent": the hair"; A competitor is a binding moiety that binds to a stem molecule (e.g., a body X peptide: a disease protein). Competing agents include compounds such as anti-[human]: & ligates, ligands and the like. In some cases, competitive binding between the beta and the competitor allows the test compound to be displaced: in the -example the test compound is labeled. Test compound, competing agent, or both are added to the protein for a sufficient time to allow for the knot. . Incubate at temperatures that favor optimal activity (usually between generations and thieves). The incubation period is typically optimized to facilitate, for example, rapid high throughput screening, usually between time and time. Excess reagents are generally removed or washed away. The second component is then added and the presence or absence of the labeled component is followed to indicate binding.一 In one embodiment, a competitor is first added followed by a test compound. Competitor replacement indicates that the test compound binds to the cancer protein and is thereby capable of binding and potentially modulating the activity of the cancer protein. In this embodiment, any of the components can be labeled. Thus, for example, if the competitor is labeled' then the presence of a label in the solution after washing of the test compound indicates replacement of the compound being tested. Alternatively, if the test compound is labeled, the presence of a standard on the support indicates that the substitution has occurred. In an alternate embodiment, the test compound is first added while culturing and washing, followed by the addition of a competitor. The absence of a competitor binding indicates that the test compound 142769.doc • 157-201021828 binds to the cancer protein with a higher affinity than the competitor. Thus, if the test compound is labeled, the presence of a label on the support together with the absence of a competitor indicates that the test compound binds and thereby potentially modulates the cancer protein of the present invention. Therefore, the 'competitive binding method' includes a differential screening method for an agent capable of regulating the activity of the cancer protein of the present invention. In this embodiment, the methods comprise combining a cancer protein with a competitor in a first sample. The second m compound, cancer protein and competitor. For the two types: the combination of 敎 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲 甲The agent then binds to the cancer protein. , or 'Use differential screening to identify candidate drugs that can bind = by: a protein. For example, cancer: A drug that is designed to interact with each other in a rational drug design that does not normally bind to the protein. In addition, the products affecting the natural cancer egg L are also memorized by screening the candidate for the (4) M sex. The ability to enhance or reduce the activity of the 4 protein can be used in assays with positive and negative controls. Preferably, the present invention is performed in at least triplicate to obtain a statistically significant result sample culture sufficient to allow the agent to bind to the protein result. After all the samples, the non-specific binders in the sample were interposed: The amount of the general marker agent that is cultivated. For example, the combination of the test and the right use of the radioactive label, 142769.doc -158- 201021828 can be used to count the sample to determine the amount of compound bound. Most & includes a variety of other reagents. Such agents include agents for promoting protein binding and/or reducing non-specific or background interactions: reagents such as salts, neutral proteins (eg, albumin), detergents, and other agents that modify the efficiency of the shirt. Such as protein transduction: agents, nuclease inhibitors, antimicrobial agents, and the like. A mixture of the components is added in the order in which they are to be combined.
使用聚核料下調或抑制本發明之蛋白質 可如WO 91/G4753中所述,藉由與配體結合分子形成接 合物將癌症之_酸調節劑弓丨入含有標乾核苦酸序列之 細胞内。適當的配體結合分子包括(但不限於)細胞表面受 體生長口子其他細胞因子或結合細胞表面受體之其他 配體。配體結合分子之接合較佳實質上不干擾配體結合分 子結合其相應分子或受體的能力,或不阻斷有義或反義募 核苷酸或其接合型式進入細胞内。或者,可如w〇 90/10448中所述’例如藉由形成聚核苷酸-脂質複合物將癌 症之聚核苷酸調節劑引入含有標靶核酸序列的細胞内。應 瞭解’除用於治療方法外’反義分子或基關除及敲入模 型之用途亦可用於如上所述之篩檢檢定中。 抑制性及反義核苷酸 在某些實施例中,藉由使用反義聚核苷酸或抑制性小核 RNA(snRNA)(亦即與編碼mRNA核酸序列(例如本發明之癌 症蛋白質、mRNA或其子序列)互補且較佳可與其特異性雜 交的核酸)將癌症相關蛋白質之活性下調或完全抑制。反 142769.doc •159· 201021828 義聚核苷酸與mRNA之結人蚀^ , 〇使mRNA之轉譯及/或穩定性降 低。 在本發明之上下文中,反義聚核苷酸可包含天然存在之 核發酸或由天然存在之亞單元或其親近同源物形成的合成 物質。反義聚核#酸亦可具有經改變之糖部分或交互糖 鍵其中例不性糖部分或交互糖鍵為硫代鱗酸醋及已知用 於此項技術中之其他含硫物質。本發明包含類似物,只要 其有效地起作用以與本發明之核普酸雜交。參見例如WsDownregulating or inhibiting the protein of the present invention using a polynuclear material, as described in WO 91/G4753, can be inserted into a cell containing a standard dry lipo acid sequence by forming a conjugate with a ligand binding molecule. Inside. Suitable ligand binding molecules include, but are not limited to, cell surface receptor growth cytokines or other ligands that bind to cell surface receptors. The ligation of the ligand binding molecule preferably does not substantially interfere with the ability of the ligand binding molecule to bind its corresponding molecule or receptor, or to block access to the sense or antisense nucleotide or its binding pattern into the cell. Alternatively, a cancer modulator of a cancer can be introduced into a cell containing a target nucleic acid sequence, for example, by forming a polynucleotide-lipid complex as described in WO 90/10448. It should be understood that the use of antisense molecules or base-off and knock-in models other than for therapeutic methods can also be used in screening assays as described above. Inhibitory and antisense nucleotides In certain embodiments, by using an antisense polynucleotide or an inhibitory small nuclear RNA (snRNA) (ie, with an encoding nucleic acid sequence (eg, a cancer protein, mRNA of the invention) A nucleic acid which is complementary and preferably hybridizable to it, or a subsequence thereof, downregulates or completely inhibits the activity of a cancer associated protein. Anti-142769.doc •159· 201021828 The agglutination of nucleotides and mRNA is reduced by ,, and the translation and/or stability of mRNA is reduced. In the context of the present invention, an antisense polynucleotide may comprise a naturally occurring nucleating acid or a synthetic material formed from a naturally occurring subunit or an ortholog thereof. The antisense polynuclear acid may also have an altered sugar moiety or an interactive sugar linkage wherein the saccharide moiety or the interactive sugar linkage is thiophyllin and other sulfur-containing materials known in the art. The present invention encompasses an analog as long as it functions effectively to hybridize to the nucleotide acid of the present invention. See for example Ws
Pharmaceuticals, Carlsbad, CA; Sequitor, Inc., Natick, MA 0 該等反義聚核苷酸可容易地使用重組方式合成或可在 活體外合成。用於此合成之設備由數家供應商出售,包括 Applied Bi〇Systems。其他寡核苷酸(諸如硫代磷酸酯及烷 化衍生物)之製備亦為熟習此項技術者所熟知。 如本文中所使用之反義分子包括反義或有義募核苷酸。 有義寡核苷酸例如藉由結合反義股可用於阻斷轉錄。反義 及有義寡核苷酸包含能夠結合癌症分子之標把mRNA(有 義)或DNA(反義)序列的單股核酸序列(rna或DNA)。本發 明之反義或有義寡核苷酸包含一般具有至少約12個核苦 酸、較佳約12個至30個核苷酸之片段。基於編碼給定蛋白 質之cDNA序列獲得反義或有義寡核普酸之能力描述於例 如 Stein & Cohen (Cancer Res. 48:2659 (1988))及 van derPharmaceuticals, Carlsbad, CA; Sequitor, Inc., Natick, MA 0 These antisense polynucleotides can be readily synthesized recombinantly or can be synthesized in vitro. Equipment for this synthesis is sold by several suppliers, including Applied Bi〇Systems. The preparation of other oligonucleotides, such as phosphorothioates and alkylated derivatives, is also well known to those skilled in the art. Antisense molecules as used herein include antisense or sense nucleotides. A sense oligonucleotide can be used to block transcription, for example by binding an antisense strand. Antisense and sense oligonucleotides comprise a single-stranded nucleic acid sequence (rna or DNA) capable of binding to an mRNA (sense) or DNA (antisense) sequence of a cancer molecule. Antisense or sense oligonucleotides of the invention comprise fragments which generally have at least about 12 nucleotides, preferably from about 12 to 30 nucleotides. The ability to obtain antisense or sense oligonucleotides based on cDNA sequences encoding a given protein is described, for example, in Stein & Cohen (Cancer Res. 48:2659 (1988)) and van der
Krol 等人(BioTechniques 6:958 (1988))。 核酶 142769.doc -160 - 201021828 除反義聚核苷酸外,核酶亦可用於靶向並抑制癌症相關 核苷酸序列之轉錄。核酶為催化分裂其他RNA分子之RNA 分子。已描述不同種類的核酶,包括I類核酶、錘頭核 酶、髮夾核酶、核糖核酸酶P及斧頭核酶(欲一般性回顧不 同核酶之特性,參見例如Castanotto等人,Adv. in Pharmacology 25: 289-317 (1994)) ° 髮失核酶之一般特徵描述於例如Hampel等人,Nucl. Acids Res. 18:299-304 (1990);歐洲專利公開案第 0360257 ® 號;美國專利第5,254,678號。製備方法已為熟習此項技術 者所熟知(參見例如WO 94/26877 ; Ojwang等人,Proc. Natl. Acad. Sci. USA 90:6340-6344 (1993) ; Yamada等人, Human Gene Therapy 1:39-45 (1994) ; Leavitt等人,Proc. Natl. Acad Sci. USA 92:699-703 (1995) ; Leavitt等人, Human Gene Therapy 5: 11 5 1 -120 (1994);及 Yamada 等 人,Virology 205: 121-126 (1994))。 調節劑在表現型篩檢中之用途 在一實施例中,將測試化合物投與具有相關癌症表現分 布之癌細胞群體。本文中之「投與」或/接觸」意謂,將 調節劑以容許調節劑對細胞起作用(不論藉由攝取及細胞 内作用,還是藉由在細胞表面起作用)之方式添加至細胞 中。在有些實施例中,將編碼蛋白質藥劑(亦即肽)之核酸 置入病毒構築體内,諸如腺病毒或逆轉錄病毒構築體,且 添加至細胞中,以便實現肽藥劑之表現,例如PCT US 97/01019。亦可使用可調基因治療系統。將調節劑投與細 142769.doc -161 - 201021828Krol et al. (BioTechniques 6:958 (1988)). Ribozymes 142769.doc -160 - 201021828 In addition to antisense polynucleotides, ribozymes can also be used to target and inhibit the transcription of cancer-associated nucleotide sequences. Ribozymes are RNA molecules that catalyze the division of other RNA molecules. Different types of ribozymes have been described, including class I ribozymes, hammerhead ribozymes, hairpin ribozymes, ribonuclease P, and axe ribozymes. (To review the characteristics of different ribozymes in general, see, for example, Castanotto et al., Adv In Pharmacology 25: 289-317 (1994)) ° The general characteristics of the nuclease are described, for example, in Hampel et al, Nucl. Acids Res. 18:299-304 (1990); European Patent Publication No. 0360257®; U.S. Patent No. 5,254,678. Methods of preparation are well known to those skilled in the art (see, for example, WO 94/26877; Ojwang et al, Proc. Natl. Acad. Sci. USA 90: 6340-6344 (1993); Yamada et al, Human Gene Therapy 1: 39-45 (1994); Leavitt et al., Proc. Natl. Acad Sci. USA 92: 699-703 (1995); Leavitt et al., Human Gene Therapy 5: 11 5 1 -120 (1994); and Yamada et al. , Virology 205: 121-126 (1994)). Use of Modulators in Phenotypic Screening In one embodiment, test compounds are administered to a population of cancer cells having associated cancer performance profiles. As used herein, "administering" or "contacting" means that the modulator is added to the cell in a manner that allows the modulator to act on the cell, whether by ingestion and intracellular action, or by acting on the cell surface. . In some embodiments, a nucleic acid encoding a proteinaceous agent (ie, a peptide) is placed into a viral construct, such as an adenovirus or retroviral construct, and added to the cell to effect expression of the peptide agent, eg, PCT US 97/01019. A tunable gene therapy system can also be used. Applying the regulator to the fine 142769.doc -161 - 201021828
台中表示,標靶蛋白質之轉錄量亦不必改變。 琴表現筛檢平 。調節劑抑制 功能將用作替代標誌。 如上所述,執行篩檢以評估基因或基因產物。亦即,經 由鑑別在特定狀態下重要的特定差異表現基因,對基因或 基因產物本身之表現的調節劑進行篩檢。 使用調節劑影響本發明之肽 使用多種檢定對癌症多肽活性或癌症表現型進行量測。 舉例而言,調節劑對癌症多肽之功能的作用藉由檢查上述 參數來量測。使用影響活性之生理變化評估測試化合物對 本發明之多肽的影響。當使用完整細胞或動物測定功能性 結果時,可在諸如以下情況下評估多種影響:與實體腫瘤 相關之癌症、腫瘤生長、腫瘤轉移、新血管形成、激素釋 放、已知遺傳標誌與未表徵遺傳標誌之轉錄變化(例如藉 由北方墨點法)、細胞代謝變化(諸如細胞生長或pH改變) 及細胞内第二信使(諸如cGNIP)變化。 鐘別、表徵癌症相關序列之方法 142769.doc -162- 201021828Taichung said that the transcription of the target protein does not have to change. The performance of the piano is flat. The regulator inhibition function will be used as a surrogate marker. As described above, screening is performed to assess genes or gene products. That is, the modulator of the expression of the gene or the gene product itself is screened by identifying a specific differential expression gene that is important in a particular state. Use of Modulators to Affect Peptides of the Invention A variety of assays are used to measure cancer polypeptide activity or cancer phenotype. For example, the effect of a modulator on the function of a cancer polypeptide is measured by examining the above parameters. The effect of the test compound on the polypeptide of the invention is assessed using physiological changes affecting the activity. When using intact cells or animals to determine functional outcomes, multiple effects can be assessed, such as cancer associated with solid tumors, tumor growth, tumor metastasis, neovascularization, hormone release, known genetic markers, and uncharacterized inheritance. Transcriptional changes in markers (eg, by northern blotting), changes in cellular metabolism (such as cell growth or pH changes), and changes in intracellular second messengers (such as cGNIP). A method for characterizing cancer-related sequences 142769.doc -162- 201021828
多種基因序列之表現與癌症相關。因此,可基於突變體 或變異體癌症基因判定病症。在一實施例中,本發明提供 f別含有變異體癌症基因之細胞的方法,例如測定細胞中 是否存在至少-種内源癌症基因之序列之全部或部分。此 舉可使用多種定序技術實現^本發明包含鑑別個體之癌症 基因型的方法,例如測定個體中的本發明之至少一種基因 之序列之全部或部分。在匕舉一般在個體之至少一個組織 (例如表π所列之組織)中執行,且可包括評估多種組織或 相同組織之不同樣本。該方法可包括將所定序基因之序列 與已知癌症基因(亦即野生型基因)之序列對比以判定是否 存在家族成員、同源體、突變體或變異體。接著可將該基 因之全部或部分序列與已知癌症基因之序列對比以判定是 否存在任何差異。此舉可使用多種已知同源性程式(諸如 BLAST、Bestfit等)執行。如本文中所述,患者之癌症基因 與已知癌症基因《間存在的序列差異與疾病狀態或疾病狀 態之傾向相關。 在一較佳實施例中,癌症基因係用作測定基因組中之癌 症基因複本數的探針。癌症基因可用作測定癌症基因之染 色體定位的探針。當在癌症基因座中鑑別到染色體異常 (諸如移位及其類似異常)時,諸如染色體定位之資訊可用 於提供診斷或預後。 XIII.) RNAi及小型干擾RNA(siRNA)之治療性用途 本發明亦關於siRNA寡核苷酸、尤其涵蓋58P1D12編碼 區或5" UTR區之至少一片段或補體或對581>1]〇12序列特異 142769.doc -163- 201021828 之任何反義寡核苷酸的雙股Rna。在一實施例中,該等寡 核苷酸用於闞明58P1D12之功能’或用於篩檢或評估 58P1D12功能或表現之調節劑。在另一實施例中, 5 8?1012之基因表現可藉由使用3丨1^八轉染來降低且導致 内源性表現抗原之經轉型癌細胞之增殖能力明顯減弱;如 依據例如細胞存活力之代謝性示值讀數所量測,經特異性 58P1D12 siRNA處理的細胞顯示存活降低,此與增殖能力 降低相關。因此’ 58P1D12 siRNA組合物包含對鹿於 58P1D12蛋白質之核酸ORF序列或其子序列的siRNA(雙股 RNA);該等子序列一般具有5、6、7、8、9、1〇、n、 12、13、14、15、16、17、18 ' 19、20、21、22、23、 24、25、26、27、28、29、30、31、32、33、34、35或 35 個以上之毗連RNA核苷酸長度且含有與mRNA編碼序列之 至少一部分互補及不互補的序列。在一較佳實施例中,子 序列具有19 - 2 5個核4酸長度,最佳2 1 - 2 3個核苦酸長度。 RNA干擾為活體外及活體内使基因沉默的新穎方法,因 此小雙股RNA(siRNA)為重要的治療劑。siRNA使特異性基 因活動沉默的能力現已用於動物疾病模型且亦用於人類。 舉例而言’將含有針對特定標把之siRNA之siRNA溶液以 流體動力方式輸注入小鼠體内經證明在治療上有效。The performance of multiple gene sequences is associated with cancer. Thus, a condition can be determined based on a mutant or variant cancer gene. In one embodiment, the invention provides a method of fusing a cell comprising a variant cancer gene, e.g., determining whether all or a portion of the sequence of at least one endogenous cancer gene is present in the cell. This can be accomplished using a variety of sequencing techniques. The invention encompasses methods for identifying a cancer genotype in an individual, e.g., determining all or part of a sequence of at least one gene of the invention in an individual. The squatting is generally performed in at least one organization of the individual (e.g., the organization listed in Table π), and may include evaluating different tissues or different samples of the same tissue. The method can include comparing the sequence of the sequenced gene to the sequence of a known cancer gene (i.e., a wild type gene) to determine the presence or absence of a family member, homologue, mutant or variant. All or part of the sequence of the gene can then be compared to the sequence of a known cancer gene to determine if there is any difference. This can be performed using a variety of known homology programs, such as BLAST, Bestfit, and the like. As described herein, the sequence difference between a patient's cancer gene and a known cancer gene is associated with a predisposition to a disease state or disease state. In a preferred embodiment, the cancer gene line is used as a probe for determining the number of cancer gene copies in the genome. The cancer gene can be used as a probe for determining the localization of the chromosome of a cancer gene. When chromosomal abnormalities (such as shifts and similar abnormalities) are identified in cancer loci, information such as chromosomal localization can be used to provide a diagnosis or prognosis. XIII.) Therapeutic Use of RNAi and Small Interfering RNA (siRNA) The present invention also relates to siRNA oligonucleotides, particularly comprising at least a fragment of the 58P1D12 coding region or the 5" UTR region or complement or pair 581> A double stranded Rna of any antisense oligonucleotide of 142769.doc -163- 201021828. In one embodiment, the oligonucleotides are used to clarify the function of 58P1D12 or to modulate or evaluate modulators of 58P1D12 function or performance. In another embodiment, the gene expression of 5 8 to 1012 can be reduced by using 3丨1^8 transfection and the proliferative ability of the transformed cancer cells causing the endogenous antigen is significantly reduced; Measurements of viability metabolic readings showed that cells treated with specific 58P1D12 siRNA showed reduced survival, which was associated with decreased proliferative capacity. Thus the '58P1D12 siRNA composition comprises siRNA (double stranded RNA) to the nucleic acid ORF sequence of the deer 58P1D12 protein or a subsequence thereof; the subsequences generally have 5, 6, 7, 8, 9, 1 , n, 12 , 13, 14, 15, 16, 17, 18 '19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 or more than 35 The contiguous RNA nucleotide is of a length and contains a sequence that is complementary and non-complementary to at least a portion of the mRNA coding sequence. In a preferred embodiment, the subsequence has 19 - 25 core 4 acid lengths, preferably 2 1 - 2 3 nucleotide acid lengths. RNA interference is a novel method for silencing genes in vitro and in vivo, so small double-stranded RNA (siRNA) is an important therapeutic agent. The ability of siRNA to silence specific gene activity has now been used in animal disease models and is also used in humans. For example, the hydrodynamic injection of a siRNA solution containing siRNA against a specific target into a mouse has proven to be therapeutically effective.
Song專人之先期著作指明,一類完全天然核酸小型干擾 RNA (siRNA)用作治療劑,即便無進一步之化學修飾 (Song, E.等人「RNA interference targeting Fas protects mice from fulminant hepatitis」Nat· Med. 9(3): 347-51 142769.doc -164- 201021828 (2003))。此著作提供將siRNA輸注入動物内可減輕疾病之 第一個活體内證據。在彼情況下,著者將設計成可使Fas 蛋白質(一種細胞死亡受體,其在炎性反應期間受到過度 活化時可誘導肝細胞及其他細胞死亡)沉默的siRNA注入小 鼠。次日,將對Fas特異之抗體給與動物。對照小鼠數日 内死於急性肝功能衰竭,而經siRNA治療之小鼠中逾8〇% 未染重病且存活。其肝細胞約8〇%至9〇%合併裸 核苷酸。此外,3週後,RNA分子發揮作用,10天後失 ®效。 用於人類治療時,用誘導持久RNAi活性之有效系統傳 遞siRNA。臨床用途之主要限制為將siRNA傳遞至適當細 胞。肝細胞似乎特別易接收外源RNA。現今,由於肝為易 受核酸分子及病毒載體靶向之器官,因此誘人之標靶位於 肝中。然而’其他組織及器官標靶亦較佳。 使用siRNA與促進穿越細胞膜之化合物的調配物以在治 •療中改善siRNA之投與。經化學修飾之合成siRNA為另一 貫她例其對核酸酶具有抗性且具有使RNAi作用之持續 時間伴隨性延長的血清穩定性。 因此’ siRNA技術係藉由將針對58P1D12之siRNA分子傳 遞至患有癌症(諸如表1中所列之彼等癌症)的個體來治療人 類惡性疾病。此siRNA投與導致表現58piD12之癌細胞之 生長減緩’並提供抗腫瘤療法’從而降低與惡性疾病相關 之罹病率及/或死亡率。 當活體外或活體内量測時,基因產物之此分解形式明顯 142769.doc -165- 201021828 有效。當使用活體外方法偵測58P1D12蛋白質之表現降低 時,活體外有效性易經由將加於培養物之細胞中 (如上所述)得到證明,或施加至癌症患者活組織檢查之等 分試樣中得到證明。 XIV·)套組/製品Song's prior work indicates that a class of fully natural nucleic acid small interfering RNA (siRNA) is used as a therapeutic agent, even without further chemical modification (Song, E. et al. "RNA interference targeting Fas protects mice from fulminant hepatitis" Nat· Med. 9(3): 347-51 142769.doc -164- 201021828 (2003)). This work provides the first in vivo evidence that the infusion of siRNA into an animal can alleviate the disease. In this case, the authors will be designed to inject mice into silencing siRNAs that silence the Fas protein, a cell death receptor that induces hepatocytes and other cell death when overactivated during an inflammatory response. The next day, antibodies specific for Fas were administered to the animals. Control mice died of acute liver failure within a few days, while more than 8% of siRNA-treated mice were not seriously ill and survived. The liver cells are about 8〇% to 9%% combined with naked nucleotides. In addition, after 3 weeks, the RNA molecule worked and lost its effect after 10 days. For human therapy, siRNA is delivered using an efficient system that induces long-lasting RNAi activity. A major limitation for clinical use is the delivery of siRNA to appropriate cells. Hepatocytes appear to be particularly susceptible to receiving foreign RNA. Today, because the liver is an organ that is susceptible to nucleic acid molecules and viral vectors, the attractive target is in the liver. However, other tissue and organ targets are also preferred. The use of siRNAs and formulations that promote compounds that cross cell membranes to improve the administration of siRNA during treatment. The chemically modified synthetic siRNA is another serum which is resistant to nucleases and which has a concomitant extension of the duration of action of RNAi. Thus ' siRNA technology treats human malignant diseases by delivering siRNA molecules directed against 58P1D12 to individuals with cancer, such as those listed in Table 1. This siRNA administration slows the growth of cancer cells expressing 58 piD12 and provides anti-tumor therapy to reduce the morbidity and/or mortality associated with malignant diseases. When decomposed in vitro or in vivo, the breakdown of the gene product is clearly 142769.doc -165- 201021828 effective. When an in vitro method is used to detect a decrease in the performance of the 58P1D12 protein, the in vitro efficacy is readily demonstrated by the cells added to the culture (as described above) or applied to an aliquot of a cancer patient biopsy. Get proof. XIV·) sets/products
用於本文中所述之實驗室、預後、預防、診斷及治療應 用的套組屬於本發明之範疇内。該等套組可包含:載器,· 封裝;或經分區以接收一或多個容器(諸如小瓶、試管及 其類似物)的容器,各容器包含欲用於方法中之單獨元件GKits for use in the laboratory, prognostic, prophylactic, diagnostic, and therapeutic applications described herein are within the scope of the present invention. The kits may comprise: a carrier, a package, or a container partitioned to receive one or more containers (such as vials, test tubes, and the like), each container containing a separate component G to be used in the method.
之一以及包含使用(諸如本文中所述之用途)說明之標藏或 插頁。舉例而t,容器可包含以可偵測方式或可以可制 方式標記的探針。此探針可為分別對本發明之蛋白質或基 因或訊息特異的抗體或聚核若該方法使用核酸雜交 法谓測縣核酸,則該套組亦可具有含有供擴增標乾核酸 序列之用之核苷酸的容器。套組可包含含有與報導分子 (諸如酶標记、螢光標記或放射性同位素標記)結合之報導 因子(諸如生物素結合蛋白,諸如抗生物素蛋白或抗生蛋 白鏈菌幻的容器;此報導因子可聯合例如核酸或抗體使 用。套組可包括圖!、圖2或圖3中之胺基酸序列或其類似 物之全部或部分’或編碼該等胺基酸序列的核酸分子。 本發明之套組通常包含上述容器及—或多個與此相關的 其他容器’該等容器包含依據商業及使用者立場所需的物 質’包括緩衝劑、稀釋劑、過滤器、針、注射器;列有含 量及/或使用說明之載器、封寰、容器、小瓶及/或試管標 I42769.doc -166 - 201021828 籤;及具有使用說明之封裝插頁。 標籤可存在於容器上或隨同容器存在,以表明組合物用 於=定療法或非治療性應用,諸如預後、預防、珍斷或實 驗室應肖’且亦可表明活體内或活體外使用說明,諸如本 文中所述的彼等使用說明。隨同套組存在或包括於套組上 之插頁或標籤亦可包括說明及/或其他資訊。標鐵可位於 容器上或附隨容器。當形成標籤之字母、數字或其他字符 成形或蝕刻於容器自身内時,標籤可位於容器上;當標籤 存在於亦容納容器的貯器或載器内時,其可附隨該容^, 此標籤例如為包裝插頁。標籤可表明組合物用於診斷、治 療、預防或預後病狀,諸如表〗中所列之組織之瘤形成。 術語「套組」與「製品」可同義使用。 在本發明之另一實施财,提供含有組合物之製品,該 等組合物諸如胺基酸序列、小分子、核酸序列及/或= 體,例如適用於診斷、預後、預防及/或治療諸如表 Φ列之彼等組織之瘤形成的物質。該製品通常包含至少一個 容器及至少一個標籤。適當容器包括例如瓶、小瓶、注射 器及試管。該等容器可由多種材料(諸如玻璃、金屬或塑 料)形成。該容器可容納胺基酸序列、小分子、核酸序 列、細胞群體及/或抗體。在一實施例中,該容器容納用 於檢查細胞之mRNA表現分布的聚核苷酸以及用於此目的 之试劑。在另一實施例中,容器包含用於評估細胞及組織 中之5 8P1D12之蛋白質表現或用於相關實驗室、預後、診 斷、預防及治療目的的抗體、其結合片段或特異性結合蛋 142769.doc •167· 201021828 白;關於該等用途之指示及/或說明可包括於該容器上或 隨同該容器存在,用於該等目的之試劑及其他組合物或工 具亦可包括於5亥谷益上或隨同該容器存在。在另一實施例 中’容器包含用於誘發細胞或體液免疫反應之物質以及相 關才曰示及/或說明。在另一實施例中,容器包含用於過繼 性免疫療法之物質,諸如細胞毒性T細胞(CTL)或輔助T細 胞(HTL),以及相關指示及/或說明;亦可包括用於此目的 之試劑及其他組合物或工具。 容器可替代性地容納有效治療、診斷、預後或預防病狀 之組合物且可具有無菌接取孔(例如容器可為靜脈内溶液 袋或具有可由皮下注射針刺穿之塞子的小瓶)。組合物中 之活性劑可為能夠特異性結合58P1D12且調節58P1D12功 能的抗體。 該製品可進一步包含第二容器,該第二容器包含醫藥學 上可接受之緩衝劑,諸如磷酸鹽缓衝鹽水、林格氏溶液 (Ringer’s solution)及/或右旋糖溶液。其可進一步包括依據 商業及使用者立場所需的其他物質,包括其他緩衝劑、稀 釋劑、過濾器、攪拌器、針、注射器及/或具有使用指示 及/或說明之包裝插頁。 實例 藉由以下若干實例進一步描述並說明本發明之多種態 樣,但不希望該等實例限制本發明之範疇。 實例1 58P1D12 抗原 142769.doc -168- 201021828 使用此項技術中已知的抑制性扣減雜交(SSH)方法發現 新穎的58P1D12基因序列。使用標準方法自LAPC異種移植 SSH實驗鑑別 427 bp 之 58P1D12 SSH序列。自 LAPC-9 AD 文庫分離58P1D12之全長cDNA純系。cDNA(純系2)長度為 25 50 bp且編碼273胺基酸〇rf(參見圖以)。58piDi2 v.l呈 現與人類軟骨凝集蛋白100%之同源性。參見以下文獻供 進步參考.美國專利第7,087,718號(八吕6118}^,111〇.,831^ Monica,CA)及美國專利公開案us 2〇〇5/〇l36435 (Agensys, Inc., Santa Monica, CA) 〇 58P1D12之剪接變異馥 剪接變異體為藉由替代性轉錄或替代性剪接、由相同基 因產生之成熟❿财變異體。替代性轉錄物為來自相同基 因、但在不同點起始轉錄的轉錄物。剪接變異體為相同轉 錄物經不同剪接的mRNA變異體。户古>3 a丄 文共體。在真核細胞中,當由基 因組DNA轉錄多外顧子其吐 、 φ 千基因時,初始RNA經剪接以產生功 能性mRNA,其僅呈右休骷工。m m卜顯子且用於轉譯成胺基酸序列。 因此,給定基因可具有裳5炙接社, 以多種替代性轉錄物JL各轉錄物 可具有令至多種剪接變異體。相 對於最初轉錄物,各轉錄 物變異體具有獨特的外顯子構 、 /V „ ... .. 丘了具有不同的編碼部 分及/或非編碼(5,或3,端)部分。轅 77轉錄物變異體可編碼且古 相同或相似功能之相似或不4馬具有 皮曰質’或可編碼且 功能之蛋白質,且可在相同 U不问 同組織中同時受到表現,或 次在不 成在相同組織中在不同時間受到 142769.doc 201021828 表現,或在不同組織中在不同時間受到表現。由轉錄物變 異體編碼之蛋白質可具有相似或不同的細胞定位或細胞外 定位,例如分泌式定位相對於細胞内定位。 藉由此項技術中已接受的多種方法鑑別轉錄物變異體。 舉例而言,藉由全長選殖實驗或藉由使用全長轉錄物及 EST序列鑑別替代性轉錄物及剪接變異體。首先,將全部 人類EST分類為彼此間呈現直接或間接一致性的群集。其 次,將同一群集中的EST進一步分類為亞群且組合成一致 序列。將最初基因序列與一致序列或其他全長序列比較。 各一致序列為彼基因之潛在剪接變異體(參見例如URL www.doubletwist.com/products/c 1 l_agentsOverview.jhtml) 。即使當鑑別不為全長純系之變異體時,變異體之彼部分 仍非常適用於使用此項技術中已知的技術產生抗原及進一 步選殖全長剪接變異體。 此外,可利用此項技術中基於基因組序列鑑別轉錄物變 異體之電腦程式。基於基因組之轉錄物變異體鑑別程式包 括 FgenesH(A. Salamov 及 V. Solovyev,「Ab initio gene finding in Drosophila genomic DNA,」Genome Research. 2000 年 4 月;10(4):516-22) ; Grail(URL compbio.ornl.gov/ Grail-bin/EmptyGrailForm)及 GenScan(URL genes.mit.edu/ GENSCAN.html)。有關剪接變異體鑑別方案之一般論述, 言青參見例如 Southan,C.,A genomic perspective on human proteases, FEBS Lett. 2001 年 6月 8 日;498(2-3): 214-8 ; de Souza, S.J.等人,Identification of human chromosome 22 142769.doc -170- 201021828 transcribed sequences with ORF expressed sequence tags, Proc. Natl Acad Sci U S A. 2000年 11月 7 日;97(23):12690- 為進一步證明轉錄物變異體之參數,可利用此項技術中 的多種技術,諸如全長選殖、蛋白質組學驗證、基於PCR 之驗證及5' RACE驗證等(參見例如Proteomic Validation: Brennan, S.O.等人,Albumin banks peninsula: a new termination variant characterized by electrospray mass spectrometry, Biochem Biophys Acta. 1999 年 8 月 17 日; 1433(1-2): 321-6 ; Ferranti P等人,Differential splicing ofOne and a label or insert containing instructions for use, such as those described herein. By way of example, the container can include probes that are detectable or can be labeled. The probe may be an antibody or a polynucleus specific for the protein or gene or message of the present invention. If the method uses a nucleic acid hybridization method to measure the nucleic acid, the kit may also have a nucleic acid sequence for amplification. A container for nucleotides. The kit may comprise a reporter comprising a reporter (such as a biotin-binding protein, such as avidin or avidin phantom) in combination with a reporter molecule such as an enzymatic label, a fluorescent label or a radioisotope label; this reporter may Combinations such as nucleic acids or antibodies can be used. The kit can include all or part of the amino acid sequence of Figure 2, Figure 2 or Figure 3 or an analog thereof or a nucleic acid molecule encoding such amino acid sequences. The group typically comprises the above-described containers and - or a plurality of other containers associated therewith - which contain the materials required by the commercial and user's stand - including buffers, diluents, filters, needles, syringes; / or instructions for use of carriers, seals, containers, vials and / or test tubes labeled I42769.doc -166 - 201021828; and package inserts with instructions for use. Labels may be present on or along with the container to indicate The composition is used for = therapy or non-therapeutic applications, such as prognosis, prevention, prance or laboratory response, and may also indicate in vivo or in vitro instructions, Their instructions for use as described herein. Inserts or labels that are present on or included with the kit may also include instructions and/or other information. The iron may be located on or attached to the container. When a letter, number or other character is formed or etched into the container itself, the label can be located on the container; when the label is present in a receptacle or carrier that also houses the container, it can be attached to the container, such as a package An inset. The label may indicate that the composition is used to diagnose, treat, prevent, or prognose a condition, such as neoplasia of a tissue listed in the table. The terms "set" and "article" are used synonymously. In an embodiment, an article comprising a composition, such as an amino acid sequence, a small molecule, a nucleic acid sequence, and/or a body, for example, for diagnosis, prognosis, prevention, and/or treatment, such as Table Φ, is provided. A substance formed by a tumor of a tissue, etc. The article typically comprises at least one container and at least one label. Suitable containers include, for example, bottles, vials, syringes, and test tubes. The containers can be made from a variety of materials. Formed with glass, metal or plastic. The container can hold an amino acid sequence, a small molecule, a nucleic acid sequence, a cell population and/or an antibody. In one embodiment, the container contains a polynucleus for examining the distribution of mRNA expression of the cells. Glycosylates and reagents for this purpose. In another embodiment, the container comprises antibodies for assessing protein expression of 5 8P1D12 in cells and tissues or for related laboratory, prognostic, diagnostic, prophylactic and therapeutic purposes a binding fragment or specific binding egg 142769.doc • 167. 201021828 white; instructions and/or instructions for such use may be included on or in conjunction with the container, reagents and other combinations for such purposes The article or tool may also be included on or in conjunction with the container. In another embodiment, the container contains materials and associated indications and/or instructions for inducing a cellular or humoral immune response. In another embodiment, the container comprises a substance for adoptive immunotherapy, such as cytotoxic T cells (CTL) or helper T cells (HTL), and related instructions and/or instructions; may also include for this purpose Reagents and other compositions or tools. The container may alternatively contain a composition effective to treat, diagnose, prognose or prevent the condition and may have a sterile access port (e.g., the container may be an intravenous solution bag or a vial having a stopper pierceable by a hypodermic needle). The active agent in the composition may be an antibody capable of specifically binding to 58P1D12 and modulating the function of 58P1D12. The article of manufacture may further comprise a second container comprising a pharmaceutically acceptable buffer such as phosphate buffered saline, Ringer's solution, and/or dextrose solution. It may further include other materials required by commercial and user standpoints, including other buffers, diluents, filters, blenders, needles, syringes, and/or package inserts with instructions and/or instructions for use. EXAMPLES Various aspects of the invention are further described and illustrated by the following examples, which are not intended to limit the scope of the invention. Example 1 58P1D12 antigen 142769.doc -168- 201021828 The novel 58P1D12 gene sequence was discovered using the suppression subtractive hybridization (SSH) method known in the art. The 427 bp 58P1D12 SSH sequence was identified from the LAPC xenograft SSH experiment using standard methods. The full-length cDNA pure line of 58P1D12 was isolated from the LAPC-9 AD library. The cDNA (pure line 2) is 25 50 bp in length and encodes 273 amino acid 〇rf (see figure). 58 piDi2 v.l exhibits 100% homology to human cartilage agglutinin. See the following documents for further reference. U.S. Patent No. 7,087,718 (Blu Lu 6118}, 111 〇., 831 ^ Monica, CA) and U.S. Patent Publications us 2〇〇5/〇l36435 (Agensys, Inc., Santa Monica) , CA) 剪58P1D12 splicing variant 馥 splicing variant is a mature ❿ variant produced by the same gene by alternative transcription or alternative splicing. Alternative transcripts are transcripts that originate from the same gene but initiate transcription at different points. Splice variants are mRNA variants of the same transcript that are spliced differently. Hugu > 3 a 丄 共 共. In eukaryotic cells, when genomic DNA is transcribed from the genomic DNA, the initial RNA is spliced to produce a functional mRNA, which is only a right resting. m m is used and is used to translate into amino acid sequences. Thus, a given gene can have a variety of alternative transcripts. Each transcript of JL can have a variety of splice variants. Each transcript variant has a unique exon structure relative to the original transcript, /V 。 . . . has different coding moieties and/or non-coding (5, or 3, end) moieties. A transcript variant of 77 may encode a protein that is similar or similar in function to a similar or similar function, or a protein that encodes and functions, and may be simultaneously expressed in the same U regardless of the same tissue, or may not be Behaved at the same time in the same tissue at 142769.doc 201021828, or at different times in different tissues. Proteins encoded by transcript variants may have similar or different cellular or extracellular localization, such as secretory localization Relative to intracellular localization. Transcript variants are identified by a variety of methods accepted in the art. For example, alternative transcripts and splicing are identified by full-length colonization experiments or by using full-length transcripts and EST sequences. Variants. First, all human ESTs are classified into clusters that are directly or indirectly consistent with each other. Second, ESTs in the same cluster are further classified into subgroups. Synthesize consensus sequences. Compare the original gene sequence to a consensus sequence or other full-length sequence. Each consensus sequence is a potential splice variant of the gene (see, for example, the URL www.doubletwist.com/products/c 1 l_agentsOverview.jhtml). When identifying variants that are not full-length pure lines, the other part of the variant is still well suited for the production of antigens and further selection of full-length splice variants using techniques known in the art. Furthermore, genome-based sequences based on this technique can be utilized. Computer program for identifying transcript variants. Genome-based transcript variant identification programs include FgenesH (A. Salamov and V. Solovyev, "Ab initio gene finding in Drosophila genomic DNA," Genome Research. April 2000; 10 ( 4): 516-22); Grail (URL compbio.ornl.gov/ Grail-bin/EmptyGrailForm) and GenScan (URL genes.mit.edu/ GENSCAN.html). For a general discussion of the identification of splice variants, see, for example, Southan, C., A genomic perspective on human proteases, FEBS Lett. June 8, 2001; 498(2-3): 214-8; de Souza, SJ et al., Identification of human chromosome 22 142769.doc -170- 201021828 transcribed sequences with ORF expressed sequence tags, Proc. Natl Acad Sci US A. November 7, 2000; 97(23): 12690- to further demonstrate transcription Parameters of the variants can utilize a variety of techniques in the art, such as full-length colonization, proteomic validation, PCR-based validation, and 5' RACE validation (see, for example, Proteomic Validation: Brennan, SO et al, Albumin banks Peninsula: a new termination variant characterized by electrospray mass spectrometry, Biochem Biophys Acta. August 17, 1999; 1433(1-2): 321-6; Ferranti P et al., Differential splicing of
pre-messenger RNA produces multiple forms of mature caprine alpha(sl)-casein,Eur J Biochem. 1997年 10月 1 曰; 249(1): 1-7。對於基於PCR之驗證:Wellmann S等人, Specific reverse transcription-PCR quantification of vascular endothelial growth factor (VEGF) splice variants by LightCycler technology,Clin Chem. 2001 年 4 月;47(4): 654-60 ; Jia, Η·Ρ. 等人,Discoveryofnewhumanbeta-defensins using a genomics-based approach, Gene. 2001 年 1 月24日;263(1-2)·. 211-8。對於基於PCR之驗證及5' RACE 驗證:Brigle, K.E.等人,Organization of the murine reduced folate carrier gene and identification of variant splice forms, Biochem Biophys Acta. 1997 年 8 月 7 日; 1353(2): 191-8)。 此項技術中已知基因組區域在癌症中受到調節。當基因 142769.doc -171 - 201021828 定位之基因組區域在特定癌症中受到調節時基因之替代 性轉錄物或剪接變異體亦受到調節。本文中揭示58piDi2 具有與癌症有關之特定表現分布。58P1D12之替代性轉錄 物及男接變異體亦與相同或不同組織之癌症相關,因此用 作腫瘤相關標誌/抗原。 使用全長基因及EST序列鑑別四種轉錄物變異體,命名 為 58P1D12 ν.2、ν.3、ν·4及 ν·5(圖 1B-圖 1E)。 實例3 58P1D12之單一核苷酸多態型 單一核芽酸多態型(SNP)為核普酸序列中特定位置處之 單一鹼基對變異形式。在基因組之任何給定點處,存在四 種可能的核苷酸鹼基對:A/T、C/G、G/C及Τ/Α。基因型 係指個體基因組中一或多個位置處之特定鹼基對序列。單 純型係指相同DNA分子(或高等有機體之相同染色體)上一 個以上位置處之驗基對序列,通常用於一種基因之背景下 或若干種緊密連鎖基因之背景下。存在於cDNA上之Snp 稱為cSNP。此cSNP可使由該基因編碼之蛋白質之胺基酸 改變且從而改變蛋白質功能。在個體當中,有些SNp引起 遣傳疾病;有些SNP促使表現型數量變異及對環境因素(包 括膳食及藥物)發生反應。因此,SNP及/或等位基因之組 合(稱為單純型)具有多種應用,包括診斷遺傳疾病、測定 藥物反應及劑量、鑑別對疾病負責之基因及分析個體之間 的遺傳關係(P. Nowotny,J. M. Kwon及 A. M. Goate,「SNP analysis to dissect human traits, j Curr. Opin. Neurobiol. 142769.doc -172- 201021828 2001 年 10月;11(5):637-641 ; M. Pirmohamed及B. K. Park, 「Genetic susceptibility to adverse drug reactions,」Trends Pharmacol. Sci. 2001 年 6 月;22(6): 298-305 ; J. H. Riley, C. J. Allan, E. Lai 及 A. Roses,「The use of single nucleotide polymorphisms in the isolation of common disease genes,」Pharmacogenomics. 2000年 2月;1(1): 39-47 ; R. Judson,J. C. Stephens 及 A. Windemuth,「The predictive power of haplotypes in clinical response,」 _ Pharmacogenomics. 2000年 2 月;1(1): 1 5-26)。 藉由此項技術已接受之多種方法鑑別SNP(P. Bean,「The promising voyage of SNP target discovery,」Am. Clin. Lab. 2001 年 10月-11 月;20(9): 18-20 ; K. M. Weiss,「In search of human variation,」Genome Res. 1998年 7 月;8(7): 691-697 ; Μ. M. She,「Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies,」Clin. Chem. 2001 年 2月;47(2): 164-1 72)。舉例而言,可藉由用基於凝膠之方法(諸如限制 性片段長度多態性(RFLP)及變性梯度凝膠電泳(DGGE))對 呈現多態性之DNA片段定序來鑑別SNP。亦可藉由對自不 同個體組合之DNA樣本直接定序或藉由比較來自不同DNA 樣本之序列來發現SNP。隨著公用及專用資料庫中之序列 資料之快速積累,可藉由使用電腦程式比較序列發現SNP (Z. Gu,L. Hillier 及 P. Y. Kwok,「Single nucleotide polymorphism hunting in cyberspace,」Hum. Mutat. 1998; 142769.doc -173- 201021828 12(4):221-225)。SNP可加以檢驗且個體之基因型或單純型 可藉由多種方法(包括直接定序法及高通量微陣列法)測定 (P. Y. Kwok,「Methods for genotyping single nucleotide polymorphisms,」Annu· Rev. Genomics Hum. Genet. 2001; 2:235-258 ; M. Kokoris, K. Dix, K. Moynihan, J. Mathis, B. Erwin, P. Grass, B· Hines 及 A. Duesterhoeft,「High-throughput SNP genotyping with the Masscode system,」 Mol· Diagn· 2000年 12月;5(4): 329-340) ° 使用上述方法在以下位置處鑑別出最初轉錄物58PID 12 v.l(圖 1A)之十種 SNP: 1764 (A/C)、1987 (G/A)、2045 (A/G)、2066 (T/C)、2134 (T/A)、2350 (G/T)、2435 (G/T)、3 02 (G/T)、3 04 (G/T)及 153 3 (C/T)。具有替代性等 位基因之轉錄物或蛋白質分別命名為變異體58P1D12 v.6 至 ν.15(圖 1F)。 實例4 在原核系统中製儀重组58P1D12 為在原核細胞中表現重組58P1D12及58P1D12變異體, 將全長或部分長度58P1D12及58P1D12變異體CDNA序列選 殖入此項技術中已知之多種表現載體之任一者中。使 58P1D12變異體之以下一或多個區域受到表覌:圖1中所示 之全長序列,或58P1D12、58P1D12變異體或其類似物之 任何8、9、10、11、12、13、14、15、16、17、18、19、 20、21、22、23、24、25、26、27、28、29、30或 30個以 上的毗連胺基酸。 142769.doc •174· 201021828 A.活體外轉錄及轉譯構築體:Pre-messenger RNA produces multiple forms of mature caprine alpha(sl)-casein, Eur J Biochem. October 1997 1 曰; 249(1): 1-7. For PCR-based validation: Wellmann S et al, Specific reverse transcription-PCR quantification of vascular endothelial growth factor (VEGF) splice variants by LightCycler technology, Clin Chem. 2001 April; 47(4): 654-60; Jia, Η·Ρ. et al., Discoveryofnewhumanbeta-defensins using a genomics-based approach, Gene. January 24, 2001; 263(1-2)·. 211-8. For PCR-based validation and 5' RACE validation: Brigle, KE et al, Organization of the murine reduced folate carrier gene and identification of variant splice forms, Biochem Biophys Acta. August 7, 1997; 1353(2): 191- 8). Genomic regions are known in the art to be regulated in cancer. Alternative transcripts or splice variants of the gene are also regulated when the genomic region of gene 142769.doc -171 - 201021828 is regulated in a particular cancer. It is disclosed herein that 58piDi2 has a specific distribution of expression associated with cancer. The alternative transcripts of 58P1D12 and male variants are also associated with cancers of the same or different tissues and are therefore used as tumor-associated markers/antigens. Four full-length genes and EST sequences were used to identify four transcript variants, designated 58P1D12 ν.2, ν.3, ν·4, and ν·5 (Fig. 1B-Fig. 1E). Example 3 Single Nucleotide Polymorphism of 58P1D12 The single nucleotide polymorphism (SNP) is a single base pair variant at a particular position in the nucleotide sequence. At any given point in the genome, there are four possible base pairs of nucleotides: A/T, C/G, G/C, and Τ/Α. A genotype refers to a particular base pair sequence at one or more positions in an individual's genome. A pure type refers to a sequence of base pairs at more than one position on the same DNA molecule (or the same chromosome of a higher organism), usually in the context of a gene or in the context of several closely linked genes. The Snp present on the cDNA is called cSNP. This cSNP can alter the amino acid of the protein encoded by the gene and thereby alter the protein function. Among individuals, some SNp cause disease transmission; some SNPs contribute to phenotypic variability and response to environmental factors, including diet and drugs. Thus, a combination of SNPs and/or alleles (called phenotypes) has a variety of applications, including diagnosing genetic diseases, determining drug response and dosage, identifying genes responsible for disease, and analyzing genetic relationships between individuals (P. Nowotny , JM Kwon and AM Goate, "SNP analysis to dissect human traits, j Curr. Opin. Neurobiol. 142769.doc -172- 201021828 October 2001; 11(5): 637-641; M. Pirmohamed and BK Park, "Genetic susceptibility to adverse drug reactions," Trends Pharmacol. Sci. June 2001; 22(6): 298-305; JH Riley, CJ Allan, E. Lai and A. Roses, "The use of single nucleotide polymorphisms in The isolation of common disease genes," Pharmacogenomics. February 2000; 1(1): 39-47; R. Judson, JC Stephens and A. Windemuth, "The predictive power of haplotypes in clinical response," _ Pharmacogenomics. 2000 February; 1(1): 1 5-26). SNPs are identified by a variety of methods accepted by this technique (P. Bean, "The promising voyage of SNP target discovery," Am. Clin. Lab. 2001-November 2001; 20(9): 18-20; KM Weiss, "In search of human variation," Genome Res. July 1998; 8(7): 691-697; Μ. M. She, "Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies ," Clin. Chem. February 2001; 47(2): 164-1 72). For example, SNPs can be identified by sequencing a DNA fragment that exhibits polymorphism using gel-based methods such as Restriction Fragment Length Polymorphism (RFLP) and Denaturing Gradient Gel Electrophoresis (DGGE). SNPs can also be discovered by direct sequencing of DNA samples from different individual combinations or by comparing sequences from different DNA samples. With the rapid accumulation of sequence data in public and private databases, SNPs can be found by comparing sequences using a computer program (Z. Gu, L. Hillier and PY Kwok, "Single nucleotide polymorphism hunting in cyberspace," Hum. Mutat. 1998; 142769.doc -173- 201021828 12(4):221-225). SNPs can be tested and individual genotypes or simplex can be determined by a variety of methods including direct sequencing and high-throughput microarray (PY Kwok, "Methods for genotyping single nucleotide polymorphisms," Annu· Rev. Genomics Hum. Genet. 2001; 2:235-258; M. Kokoris, K. Dix, K. Moynihan, J. Mathis, B. Erwin, P. Grass, B. Hines and A. Duesterhoeft, "High-throughput SNP genotyping With the Masscode system," Mol· Diagn·December 2000; 5(4): 329-340) ° Ten SNPs of the initial transcript 58PID 12 vl (Fig. 1A) were identified at the following positions using the above method: 1764 (A/C), 1987 (G/A), 2045 (A/G), 2066 (T/C), 2134 (T/A), 2350 (G/T), 2435 (G/T), 3 02 (G/T), 3 04 (G/T) and 153 3 (C/T). The transcripts or proteins with alternative alleles were designated as variants 58P1D12 v.6 to ν.15 (Fig. 1F). Example 4 Recombination of 58P1D12 in Prokaryotic Systems In order to express recombinant 58P1D12 and 58P1D12 variants in prokaryotic cells, the full-length or partial length 58P1D12 and 58P1D12 variant CDNA sequences were cloned into any of various expression vectors known in the art. Among them. The following one or more regions of the 58P1D12 variant are subjected to the expression: the full length sequence shown in Figure 1, or any of the 8, P, D, 58 P1D12 variants or analogs thereof, 8, 9, 10, 11, 12, 13, 14 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more than contiguous amino acids. 142769.doc •174· 201021828 A. In vitro transcription and translation architecture:
pCRII:為產生供RNA原位研究用的58P1D12有義及反義 RNA探針’產生編碼58P1D12 cDNA之全部或片段的pCRII 構築體(Invitrogen,Carlsbad CA)°pCRII載體具有側接於 插入序列的Sp6及T7啟動子,以驅動在RNA原位雜交實驗 中用作探針之5 8P1D12 RNA之轉錄。該等探針用於在RNA 級別下分析58P1D12之細胞及組織表現。代表58P1D12基 因之cDNA胺基酸編碼區的所轉錄58P1D12 RNA用於活體 ® 外轉譯系統(諸如TnTTM偶聯網狀紅血球溶解物系統(TnTTMpCRII: a pCRII construct that encodes all or a fragment of the 58P1D12 cDNA for the production of a 58P1D12 sense and antisense RNA probe for RNA in situ studies (Invitrogen, Carlsbad CA). The pCRII vector has a Sp6 flanked by the inserted sequence. And the T7 promoter to drive transcription of the 58P1D12 RNA used as a probe in RNA in situ hybridization experiments. These probes were used to analyze the cell and tissue performance of 58P1D12 at the RNA level. The transcribed 58P1D12 RNA representing the cDNA amino acid coding region of the 58P1D12 gene is used in the Living ® external translation system (such as the TnTTM coupled reticulocyte lysate system (TnTTM)
Coupled Reticulolysate System)(Promega, Corp., Madison, WI))中以合成58P1D12蛋白質。 Β·細菌構築體: ρΘΕΧ構築體:為在細菌中產生與麵胱甘肽S_轉移酶 (GST)蛋白質融合之重組5 8P1D12蛋白質,將58P1D12 cDNA蛋白質編碼序列之全部或部分選殖入pGEX家族之 GST 融合載體(Amersham Pharmacia Biotech, Piscataway, ❹ NJ)内。該等構築體容許在胺基末端與GST融合且在羧基 末端與六個組胺酸抗原決定基(6X His)融合的重組 58P1D12蛋白質序列受到可控之表現。GST及6X His標記 容許經由適當親和性基質自所誘導之細菌純化重組融合蛋 白質且容許經由抗GST及抗His抗體識別融合蛋白質。藉由 將6個組胺酸密碼子添加至位於例如開放閱讀框架(ORF)之 3'端之選殖引子中來產生6X His標記。可使用蛋白水解分 裂位點(諸如PGEX-6P-1中之PreScissionTM識別位點)以便 142769.doc -175- 201021828 其容許GST標記與58PID 12相關蛋白質分裂。胺苄西林抗 性基因及pBR322起點容許於大腸桿菌中選擇並維持pGEX 質體。 pMAL構築體:為在細菌中產生與麥芽糖結合蛋白 (MBP)融合之重組58P1D12蛋白質,將58P1D12 cDNA蛋白 質編碼序列之全部或部分藉由選殖入pMAL-c2X及pMAL-p2X載體(New England B’iolabs,Beverly, ΜΑ)内來與 MBP基 因融合。該等構築體容許在胺基末端與MBP融合且在羧基 末端與6X His抗原決定基標記融合的重組58P1D12蛋白質 © 序列受到可控之表現。MBP及6X His標記容許經由適當親 和性基質自所誘導之細菌純化重組蛋白質且容許經由抗 MBP及抗His抗體識別融合蛋白質。藉由將6個組胺酸密碼 子添加至3'選殖引子中來產生6X His抗原決定基標記。因 子Xa識別位點容許pMAL標記與58P1D12分裂。pMAL-c2X 及pMAL-p2X載體經優化以分別在細胞質或周質中表現重 組蛋白質。周質表現使具有二硫鍵之蛋白質之摺疊增強。 〇 pET構築體:為在細菌細胞中表現58P1D12,將58P1D12 w cDNA蛋白質編碼序列之全部或部分選殖入pET家族之載體 (Novagen,Madison, WI)内。該等載體容許重組58P1D12蛋 白質在與增強溶解性之蛋白質(諸如NusA及硫氧還蛋白 (thioredoxin ; Trx))及有助於純化及偵測重組蛋白質之抗 原決定基標記(諸如6X His及S-Tag™)融合及不融合的情況 下在細菌中受到緊密控制之表現。舉例而言,使用pET NusA融合系統43.1製備構築體,以使得58P1D12蛋白質之 142769.doc -176- 201021828 區域可作為與NusA之胺基末端融合體受到表現。將編碼 58PlD12之胺基酸22-213的cDNA選殖入pET-21b載體内, 表現並自細菌純化。重組蛋白質用於產生兔多株抗體。 C.酵母構築體: pESC構築體:為在酵母種釀酒酵母 cereWhae)中表現58P1D12以產生重組蛋白質及進行功能 研究,將58P1D12 cDNA蛋白質編碼序列之全部或部分選 殖入pESC家族之載體内,各載體含有4種可選標誌HIS3、 ® TRP1、LEU2 及 URA3 中之一種(Stratagene,La Jolla, CA)。 該等載體容許具有至多2種不同基因或選殖序列、含有 FlagTM或Myc抗原決定基標記的相同質體在相同酵母細胞 中受到可控表現。此系統適用於證明58P1D12之蛋白質-蛋 白質相互作用。此外,在酵母中之表現產生類似的轉譯後 修飾,諸如在真核細胞中受到表現時所存在的糖基化及填 酸化。 pESP構築體:為在酵母種粟酒裂瘦酵母(iSace/mrow少 心)中表現58P1D12,將58P1D12 cDNA蛋白質編碼序列 之全部或部分選殖入pESP家族之載體内。該等載體容許在 胺基末端或在羧基末端與有助於純化重組蛋白質之GST融 合的58P1D12蛋白質序列受到可控之高度表現。FlagTK^^ 原決定基標記容許經由抗FlagTN^^體偵測重組蛋白質。 實例5 在高等真核系統中製備重組58P1D12 A.哺乳動物構築體: 142769.doc -177- 201021828 為在真核細胞中表現重組58 P1D12,將全長或部分長度 58P1D12 cDNA序列選殖入此項技術中已知之多種表現載 體之任一者中。使58P1D12之以下一或多個區域在該等構 築體中受到表現:58P1D12 v.l之胺基酸1至273或任何8、 9、10、11、12、13、14、15、16、17、18、19、20、 21、22、23、24、25、26、27、28、29、30 或 30個以上的 毗連胺基酸;v.2之胺基酸1至232 ; v.4之胺基酸1至236 ; 或58P1D12變異體或其類似物之任何8、9、10、u、12、 13 、 14 、 15 、 16 、 17 、 18 、 19 、 20 、 21 、 22 、 23 、 24 、 25、26、27、28、29、30或30個以上的®比連胺基酸。 可將構築體轉染入多種哺乳勤物細胞之任一者中,諸如 293T細胞。可用本文中所述的抗58P1D12多株血清探測經 轉染之293T細胞溶胞物。 pcDNA4/HisMax構築體: 為在哺乳動物細胞中表現58P1D12,將58P1D12之 58P1D12 ORF或其部分選殖入A型pcDNA4/HisMax (Invitrogen,Carlsbad,CA)中。經由細胞巨大病毒(CMV)啟 動子及SP16轉譯強化子驅動蛋白質表現。重組蛋白質具有 與胺基末端融合之XpressTM及6個組胺酸(6X His)。 pcDNA4/HisMax載體亦含有牛生長激素(BGH)聚腺苷酸化 信號及轉錄終止序列以增強mRNA穩定性,以及含有在表 現大型T抗原之細胞株中用於游離型複製及簡單載體挽救 的S V40起點。Zeocin抗性基因衮許選擇表現該蛋白質之嗔 乳動物細胞且胺苄西林抗性基因及ColEl起點容許於大腸 142769.doc -178- 201021828 桿菌中選擇並維持質體。 pcDNA3.1/MycHis構築體: 為在哺乳動物細胞中表現58P1D12,將具有一致性 Kozak轉譯起始位點之58P1D12之58P1D12 ORF或其部分選 殖入 A 型 pcDNA3.1/MycHis(Invitrogen,Carlsbad,CA)中。 經由細胞巨大病毒(CMV)啟動子驅動蛋白質表現。重組蛋 白質具有與羧基末端融合之myc抗原決定基及6X His抗原 決定基。pcDNA3.1/MycHis載體亦含有牛生長激素(BGH) ® 聚腺苷酸化信號及轉錄終止序列以增強mRNA穩定性,以 及含有在表現大型T抗原之細胞株中用於游離型複製及簡 單載體挽救的SV40起點。可使用新黴素抗性基因,因為其 容許選擇表現該蛋白質之哺乳動物細胞,且胺苄西林抗性 基因及ColEl起點容許於大腸桿菌中選擇並維持質體。 將 58P1D12 ν·1之完整 ORF選殖入pcDNA3.1/MycHis構築 體中以產生 58PlD12.pcDNA3.1/MycHis。 pcDNA3.1/CT-GFP_TOPO構築體: e 為在哺乳動物細胞中表現58P1D12並容許使用螢光偵測 重組蛋白質,將具有一致性Kozak轉譯起始位點之 58P1D12 ORF 或其部分選殖入 pcDNA3.1/CT-GFP-TOPO (Invitrogen, CA)中。經由細胞巨大病毒(CMV)啟動子驅動 蛋白質表現。重組蛋白質具有與羧基末端融合的綠螢光蛋 白質(GFP),其有利於非侵入性活體内偵測及細胞生物學 研究。pcDNA3.1CT-GFP-TOPO載體亦含有牛生長激素 (BGH)聚腺苷酸化信號及轉錄終止序列以增強mRNA穩定 I42769.doc -179- 201021828 性,以及含有在表現大型τ抗原之細胞株_用於游離型複 製及簡單載體挽救的SV40起點。新黴素抗性基因容許選擇 表現該蛋白質之哺乳動物細胞且胺苄西林抗性基因及 ColEl起點容許於大腸桿菌中選擇並維持質體。在 pcDNA3.1/NT-GFP-TOPO中形成跨越58P1D12蛋白質之整 個長度的在胺基末端與GFP融合的其他構築體。 PAPtag : 將 58P1D12 ORF 或其部分選殖入 pAPt ag-5(GenHunter Corp. Nashville, TN)中。此構築體在58P1D12蛋白質之羧© 基末端產生鹼性磷酸酶融合,同時使IgGK信號序列與胺基 末端融合。亦產生具有胺基末端IgGK信號序列之鹼性磷酸 酶與5 8P1D12蛋白質之胺基末端融合的構籍體。所得重組 58P1D12蛋白質經優化以分泌進入經轉染之哺乳動物細胞 之培養基中,且可用於鑑別與58P1D12蛋白質相互作用的 蛋白質,諸如配體或受體。經由CMV啟動子驅動蛋白質表 現且重組蛋白質亦含有在叛基末端融合的rnyc及6X His抗 原決定基,其有利於偵測及純化。存在於載體中之Zeocin ® 抗性基因容許選擇表現重組蛋白質之哺乳動物細胞且胺苄 西林抗性基因容許於大腸桿菌中選擇質體。 pTag5 : 將58P1D12 ORF或其部分選殖入pTag-5中。此載體類似 於pAPtag,但無鹼性磷酸酶融合。此構築盤產生58P1D12 蛋白質,其在胺基末端具有IgGK信號序列且在羧基末端具 有有利於彳貞測及親和性純化之myc及6X His抗原決定基標 142769.doc -180· 201021828 記。所得重組58P1D12蛋白質經優化以分泌進入經轉染之 哺乳動物細胞之培養基中,且用作免疫原或配體以鑑別與 58P1D12蛋白質相互作用之蛋白質(諸如配體或受體)。經 由CMV啟動子驅動蛋白質表現。存在於載體中之Ze〇cin抗 性基因容許選擇表現該蛋白質之哺乳動物細胞且胺苄西林 抗性基因容許於大腸桿菌中選擇質體。Coupled Reticulolysate System) (Promega, Corp., Madison, WI)) to synthesize 58P1D12 protein. Β·Bacterial construct: ρΘΕΧ construct: a recombinant 5 8P1D12 protein that is fused to a glutathione S_transferase (GST) protein in bacteria, and all or part of the 58P1D12 cDNA protein coding sequence is cloned into the pGEX family. The GST fusion vector (Amersham Pharmacia Biotech, Piscataway, ❹ NJ). These constructs allow for a controlled expression of the recombinant 58P1D12 protein sequence fused to GST at the amino terminus and fused to the six histidine epitopes (6X His) at the carboxy terminus. The GST and 6X His markers allow for the purification of recombinant fusion proteins from the induced bacteria via a suitable affinity matrix and permit recognition of the fusion protein via anti-GST and anti-His antibodies. The 6X His tag is generated by adding six histidine codons to a selection primer located, for example, at the 3' end of the open reading frame (ORF). A proteolytic cleavage site (such as the PreScissionTM recognition site in PGEX-6P-1) can be used to 142769.doc -175-201021828 which allows GST tagging and 58PID 12 associated protein cleavage. The ampicillin resistance gene and the pBR322 origin allow selection and maintenance of pGEX plastids in E. coli. pMAL construct: a recombinant 58P1D12 protein that is fused to maltose binding protein (MBP) in bacteria, and all or part of the 58P1D12 cDNA protein coding sequence is cloned into pMAL-c2X and pMAL-p2X vectors (New England B' Iolabs, Beverly, ΜΑ) is inherently fused to the MBP gene. These constructs allow for the controllable expression of the recombinant 58P1D12 protein © sequence fused at the amino terminus to MBP and fused at the carboxy terminus to the 6X His epitope tag. The MBP and 6X His markers allow purification of the recombinant protein from the induced bacteria via a suitable affinity matrix and allow recognition of the fusion protein via anti-MBP and anti-His antibodies. The 6X His epitope tag was generated by adding six histidine codons to the 3' selection primer. The factor Xa recognition site allows the pMAL marker to split with 58P1D12. The pMAL-c2X and pMAL-p2X vectors were optimized to express recombinant proteins in the cytoplasm or periplasm, respectively. Periplasmic performance enhances the folding of proteins with disulfide bonds. 〇 pET construct: In order to express 58P1D12 in bacterial cells, all or part of the 58P1D12 w cDNA protein coding sequence was cloned into the vector of the pET family (Novagen, Madison, WI). These vectors allow for the recombination of 58P1D12 proteins with proteins that enhance solubility (such as NusA and thioredoxin; Trx) and epitope markers that facilitate purification and detection of recombinant proteins (such as 6X His and S-). TagTM) is tightly controlled in bacteria with and without fusion. For example, the construct is prepared using the pET NusA fusion system 43.1 such that the 142769.doc -176-201021828 region of the 58P1D12 protein is expressed as an amine-based end fusion with NusA. The cDNA encoding the amino acid 22-213 of 58PlD12 was cloned into the pET-21b vector, expressed and purified from bacteria. Recombinant proteins are used to produce rabbit polyclonal antibodies. C. Yeast construct: pESC construct: in order to express 58P1D12 in the yeast species S. cerevisiae cereWhae) to produce recombinant protein and perform functional studies, all or part of the 58P1D12 cDNA protein coding sequence is selected into the vector of pESC family, each The vector contains one of four selectable markers HIS3, ® TRP1, LEU2 and URA3 (Stratagene, La Jolla, CA). Such vectors allow for the controllable expression of identical plastids with up to two different genes or sequences, containing FlagTM or Myc epitope markers, in the same yeast cell. This system is suitable for demonstrating the protein-protein interaction of 58P1D12. In addition, expression in yeast produces similar post-translational modifications, such as glycosylation and acidification that are present when expressed in eukaryotic cells. pESP construct: In order to express 58P1D12 in the yeast species S. cerevisiae (iSace/mrow), all or part of the 58P1D12 cDNA protein coding sequence was cloned into the vector of the pESP family. These vectors allow for a controlled, high degree of expression of the 58P1D12 protein sequence at the amine terminus or at the carboxy terminus that is fused to the GST that facilitates purification of the recombinant protein. The FlagTK^^ original determinant marker allows for the detection of recombinant proteins via the anti-FlagTN^ body. Example 5 Preparation of Recombinant 58P1D12 in Higher Eukaryotic Systems A. Mammalian Constructs: 142769.doc -177- 201021828 To characterize recombinant 58 P1D12 in eukaryotic cells, the full-length or partial-length 58P1D12 cDNA sequence was cloned into this technology. Any of a variety of performance vectors known in the art. One or more of the following regions of 58P1D12 are rendered in the constructs: amino acids 1 to 273 of 58P1D12 vl or any 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 , 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more contiguous amino acids; v. 2 amino acids 1 to 232; amines v.4 Any of 8, 9, 10, u, 12, 13, 14, 15, 16, 17, 18, 19, 19, 20, 21, 22, 23, 24 of the base acid 1 to 236; or 58P1D12 variant or analogue thereof 25, 26, 27, 28, 29, 30 or more ® bis-amino acids. The construct can be transfected into any of a variety of mammalian cells, such as 293T cells. Transfected 293T cell lysates can be probed with anti-58P1D12 multiple strains of serum as described herein. pcDNA4/HisMax construct: To express 58P1D12 in mammalian cells, the 58P1D12 ORF of 58P1D12 or a portion thereof was cloned into type A pcDNA4/HisMax (Invitrogen, Carlsbad, CA). Protein expression is driven by the cellular giant virus (CMV) promoter and the SP16 translational enhancer. The recombinant protein has XpressTM fused to the amine end and six histidine acids (6X His). The pcDNA4/HisMax vector also contains bovine growth hormone (BGH) polyadenylation signal and transcription termination sequences to enhance mRNA stability, as well as S V40 for free replication and simple vector rescue in cell lines expressing large T antigens. starting point. The Zeocin resistance gene allows selection of the protein in the milk animal cell and the ampicillin resistance gene and the ColEl origin allow for selection and maintenance of the plastid in the large intestine 142769.doc-178-201021828. pcDNA3.1/MycHis construct: To express 58P1D12 in mammalian cells, the 58P1D12 ORF or its portion of 58P1D12 with a consensus Kozak translation initiation site was cloned into type A pcDNA3.1/MycHis (Invitrogen, Carlsbad, In CA). Protein expression is driven by the cellular giant virus (CMV) promoter. The recombinant protein has a myc epitope fused to the carboxy terminus and a 6X His epitope. The pcDNA3.1/MycHis vector also contains bovine growth hormone (BGH) ® polyadenylation signal and transcription termination sequences to enhance mRNA stability, as well as for free replication and simple vector rescue in cell lines expressing large T antigens The starting point of the SV40. The neomycin resistance gene can be used because it allows selection of mammalian cells expressing the protein, and the ampicillin resistance gene and the ColEl origin allow selection and maintenance of the plastid in E. coli. The complete ORF of 58P1D12 ν·1 was cloned into the pcDNA3.1/MycHis construct to generate 58P1D12.pcDNA3.1/MycHis. pcDNA3.1/CT-GFP_TOPO construct: e is 58P1D12 in mammalian cells and allows the detection of recombinant proteins using fluorescence. The 58P1D12 ORF or part thereof with a consensus Kozak translation initiation site is cloned into pcDNA3. 1/CT-GFP-TOPO (Invitrogen, CA). Protein expression is driven by the cellular giant virus (CMV) promoter. The recombinant protein has a green fluorescent protein (GFP) fused to the carboxy terminus, which facilitates non-invasive in vivo detection and cell biology studies. The pcDNA3.1CT-GFP-TOPO vector also contains bovine growth hormone (BGH) polyadenylation signal and transcription termination sequence to enhance mRNA stability I42769.doc -179- 201021828, and cell lines containing large tau antigens The SV40 starting point for free replication and simple vector rescue. The neomycin resistance gene allows selection of mammalian cells expressing the protein and the ampicillin resistance gene and ColEl origin allow selection and maintenance of plastids in E. coli. Other constructs fused to GFP at the amine terminus spanning the entire length of the 58P1D12 protein were formed in pcDNA3.1/NT-GFP-TOPO. PAPtag: The 58P1D12 ORF or a portion thereof was cloned into pAPt ag-5 (GenHunter Corp. Nashville, TN). This construct produces an alkaline phosphatase fusion at the carboxyl terminus of the 58P1D12 protein while fused the IgGK signal sequence to the amine terminus. A constitutage body in which an alkaline phosphatase having an amino terminal IgGK signal sequence is fused to an amine terminal of the 58P1D12 protein is also produced. The resulting recombinant 58P1D12 protein is optimized for secretion into the culture medium of the transfected mammalian cells and can be used to identify proteins, such as ligands or receptors, that interact with the 58P1D12 protein. The protein expression is driven by the CMV promoter and the recombinant protein also contains rnyc and 6X His antigen determinants fused at the ruthenium end, which facilitates detection and purification. The Zeocin® resistance gene present in the vector allows selection of mammalian cells expressing the recombinant protein and the ampicillin resistance gene allows selection of plastids in E. coli. pTag5: The 58P1D12 ORF or a portion thereof was cloned into pTag-5. This vector is similar to pAPtag but without alkaline phosphatase fusion. This construct disk produces a 58P1D12 protein with an IgGK signal sequence at the amino terminus and a myc and 6X His epitope at the carboxy terminus for efficacious and affinity purification 142769.doc -180· 201021828. The resulting recombinant 58P1D12 protein is optimized for secretion into the culture medium of the transfected mammalian cells and used as an immunogen or ligand to identify proteins (such as ligands or receptors) that interact with the 58P1D12 protein. Protein expression is driven by the CMV promoter. The Ze〇cin resistance gene present in the vector allows selection of mammalian cells expressing the protein and the ampicillin resistance gene allows selection of plastids in E. coli.
PsecFc :PsecFc :
將58P1D12 ORF或其部分選殖入pSecpc*。藉由將人類 免疫球蛋白Gl(IgG)Fc(鉸鏈、CH2、CH3區)選殖入 pSecTag! (Invitrogen,California)内來組裝 psecFc 載體。此 構築體在58P1D12蛋白質之羧基末端產生IgG1 Fc融合,同 時使IgGK信號序列與^^末端融合。使用鼠科動物IgG1 Fc區 的58P1D12融合體亦可使用。所得重組58piD12蛋白質經 優化以分泌進入經轉染之哺乳動物細胞之培養基中,且可 用作免疫原或用於鑑別與58P1D12蛋白質相互作用之蛋白 質(諸如配體或受體)。經由CMV啟動子驅動蛋白質表現。 存在於載體中之潮黴素(hygromyCin)抗性基因容許選擇表 現重組蛋白質之哺乳動物細胞且胺苄西林抗性基因容許於 大腸桿菌中選擇質體。 pSRa構築體: 為產生組成性表現58P1D12之哺乳動物細胞株,將 58P1D12 ORF或其部分選殖入築體内。藉由分別將 pSRa構築體轉染入293T_10A1封裝細胞株内或將pSRa與輔 助質體(含有缺失型封裝序列)共轉染入293細胞内來產生雙 142769.doc -181 - 201021828 嗜性(Amphotropic)及親嗜性(ecotropic)逆轉錄病毒。使用 逆轉錄病毒感染多種哺乳動物細胞株,導致所選殖之基因 58P1D12整合於宿主細胞株内。經由長末端重複序列〔LTR) 驅動蛋白質表現。存在於載體中之新黴素抗性基因容許選 擇表現該蛋白質之哺乳動物細胞且胺苄西林抗性基因及 ColEl起點容許於大腸桿菌中選擇並維持質體。爾後可使 用逆轉錄病毒載體感染並產生多種細胞株,例如P C3、 NIH 3T3、TsuPrl、293 或 rat-Ι 細胞。 形成使抗原決定基標記(諸如FLAGTM標記)與58?1012序 列之羧基末端融合以容許使用抗Flag抗體偵測的其他pSRa 構築體。舉例而言,將FLAGTM序列5’ gat tac aag gat gac gac gat aag 3'(SEQ ID NO: 20)在 ORF 之 3'端添加至還殖引 子中。形成其他pSRa構築體以產生胺基末端GFP及絶基末 端GFP與全長58P1D12蛋白質之myc/6X His融合蛋白賢·。 其他病毒載體: 形成用於病毒介導型傳遞及表現58P1D12的其他構築 體。於病毒傳遞系統(諸如腺病毒載體及疱疹擴增子截體) 中達成引起58P1D12高度表現之高病毒效價。藉由PCR擴 增58P1D12編碼序列或其片段且次選殖入AdEasy穿t載體 (Stratagene)中。根據製造商說明書執行重組及病毒封裝以 產生腺病毒載體。或者,將58P1D12編碼序列或其片段選 殖入HS V-1載體(Imgenex)中以產生疮療病毒載體。爾後使 用病毒載體感染多種細胞株,諸如PC3、NIH 3T3、293或 rat-1細胞。 142769.doc -182- 201021828 調控表現系統: 為控制58P1D12在哺乳動物細胞中之表現,將58P1D12 之編碼序列或其部分選殖入調控哺乳動物表現系統中,諸 如 T-Rex 系統(Invitrogen)、GeneSwitch 系統(invitr〇gen)及 緊密調控规皮激素糸統(Sratagene)。該等系統容許對重組 58P1D12之暫時性及濃度依賴性作用進行研究。爾後使用 該等載體控制58P1D12在多種細胞株(諸如pc]、NIH 3T3、293或rat-Ι細胞)中之表現。 B.桿狀病毒表現系統 為在桿狀病毒表現系統中產生重組58P1D12蛋白質,將 58P1D12 ORF或其部分選殖入桿狀病毒轉移載體pBlueBac 4.5(InVitr〇gen)中,此轉移載體在1^末端提供ms_標記。具 體而言,將 PBlUeBaC-58PlD12 與輔助質體 pBac_N_Blue (Invitrogen)共轉染入SF9(草地黏蟲 /r叹扣r心))昆蟲細胞内以產生重組桿狀病毒(詳見 mvitrogen說明書)。接著自細胞上清液收集桿狀病毒並藉 由空斑檢定法純化。 接著藉由用經純化之桿狀病毒感染HighFive昆蟲細胞 (Invhrogen)來產生重組58ρ1Ε)12蛋白質。可使用抗 58P1D12或抗His-標記抗體偵測重組58piD12蛋白質。 58P1D12蛋白質可經純化且用於多種基於細胞之檢定中或 用作免疫原以產生對·D12特異之多株抗體及單株抗 體。 實例6 142769.doc 183- 201021828 抗原性分布及一級結構 胺基酸分布,諸如親水性(ΗοΡΡ τ·ρ.,woods K.R·, 1981. P roc. Natl. Acad. Sci. U.S.A. 78:3824-3828);疏水性(Kyte J-,Doolittle R.F.,1982. J. Mol. Biol. 157:105-132);可達 殘基百分比(Janin J·,1979 Nature 277:491-492);平均可撓 性(Bhaskaran R.,&P〇nnuswamyP.K.,1988.Int.J.Pept. Protein Res. 32:242-255) ; β轉角(Deleage,G.,R〇ux B. 1 987 Protein Engineering 1:289-294);及視需要於此項技 銜中可用之其他性質,諸如ProtScale網站上之可用者,用 泠鑑別各58P1D12及58P1D12變異體蛋白質之抗原性區 。58P1D12變異體之以上各胺基酸分布係使用以下 ProtScale分析參數產生:1)視窗尺寸為9 ; 2)與視窗中心相 tb ’視窗邊緣權重1 00°/。;及3)胺基酸分布值經標準化介於 〇與1之間。 親水性、疏水性及可達殘基百分比分布用於判定親水性 駿基酸片段(亦即親水性及可達殘基百分比分布值大於〇5 旦疏水性分布值小於〇.5h該等區域可能曝露於水性環境 ’可存在於蛋白質表面上,且因此可用於免疫識別諸 士《由抗體免疫識別。 平均可撓性及β轉角分布判定在二級結構中不受束縛的 铵基酸片段(亦即β轉角分布值及平均可撓性分布值大於 〇.5),諸如β摺疊及α螺旋。該等區域在蛋白質上亦更有可 阳曝露且因此可用於免疫識別,諸如由抗體免疫識別。 撕DU變異體蛋白質之抗原性序列表明使用例如上 1427S9.doc -184- 201021828 分布可產生免疫原。免疫原可為圖1中所列之58P1D12蛋白 質變異體之任何5、6、7、8、9、1〇、11、12、13、14、 15、16、17、18、19、20、21、22、23、24、25、30、 35、40、45、50或50個以上毗連胺基酸或編碼其的對應核 酸。特定而言,本發明之肽免疫原可包含:包括親水性分 布值大於0.5之胺基酸位置、具有圖〗中之至少5個胺基 酸、胺基酸增量為任何整數的肽區域;包括疏水性分布值 小於0.5之胺基酸位置、具有圖丨_之至少5個胺基酸、胺 ®基酸增量為任何整數的肽區域;包括可達殘基百分比分布 值大於0.5之胺基酸位置、具有圖丨中之至少個5胺基酸、 胺基酸增量為任何整數的肽區域;包括平均可撓性分布值 大於0·5之胺基酸位置、具有圖丨令之至少5個胺基酸、胺 基酸增量為任何整數的肽區域;及包括β轉角分布值大於 0.5之胺基酸位置、具有圖丨中之至少5個胺基酸、胺基酸 增量為任何整數的肽區域。本發明之肽免疫原亦可包含編 碼上述任何肽區域的核酸。 本發明之所有免疫原(肽或核酸)均可以人類單位劑量形 式體現’或由包括與人體生理學相容之醫藥賦形劑的組合 物組成。 58P1D12蛋白質及58P1D12變異體之二級結構(亦即α螺 旋延長知及無規捲曲之預測存在及位置)係使用ΗΝΝ-階 層式神經網路方法(NPS@: Network Protein Sequence Analysis TIBS 2000 年 3 月第 25 卷,第 3 期[291]:147-15〇 Combei C.,Blanchet C.,Geourjon C.及 Deldage G·,https:// I42769.doc -185- 201021828 pbil.ibcp.fr/cgi-bin/npsa_automat.pi?page=npsa_nn.html) » 自 ExPasy 分子生物學伺服器(https://www expasy ch/t〇〇Is/) 存取)由其一級胺基酸序列預測。分析表明,5 8p J D12變異 體1由24.18% α螺旋、18.68%延長股及57.140/。無規捲曲組 成。58P1D12變異體2由19.83% α螺旋、18.97%延長股及 01.21%無規捲曲組成。581>1亡12變異體3由322〇%〇1螺旋、 15.25%延長殿及52.54%無規捲曲組成。 使用自位於全球資訊網上之ExPasy分子生物學祠服器存 取之多種跨旗預測算法對58P1D12及58P1D12變異體蛋白 質中跨膜域之可能存在進行分析。 實例7 產生58P1D12多株抗髏 可於哺乳動物中產生多株抗體,例如藉由一或多次注射 免疫劑及視需要佐劑。通常藉由多次皮下或腹膜内注射將 免疫劑及/或佐劑注射於哺乳動物中。除用全長58p1Dl2蛋 白質或58P1D12變異體免疫外,亦可使用電腦算法設計免 疫原,基於膝基酸序列分析該等免疫原含有具有抗原性且 可供經免疫宿主之免疫系統識別之特徵(參見標題為「抗 原性分布及二級結構」的實例)^預測該等區域具有親水 性、可撓性、β轉角構形,且在蛋白質之表面上曝露。 舉例而言,含有581>1012蛋白質變異體之親水性、可撓 性、β轉角區的重組細菌融合蛋白質或肽可作為抗原以在 新西蘭白兔(New Zea丨and White rabbhs)中產生多株抗體。 舉例而言,名58P1D12變異體】中,該等區域包括(但不限 142769.doc • 186 - 201021828 於)胺基酸19-30、胺基酸49-66、胺基酸70-82、胺基酸88-115、胺基酸131-145、胺基酸165-203、胺基酸243-255及 胺基酸262-273。將免疫劑與已知在經免疫之哺乳動物中 具有免疫原性的蛋白質接合為適用的。該等免疫原性蛋白 質之實例包括(但不限於)匙孔螺血氰蛋白(KLH)、血清白 蛋白、牛甲狀腺球蛋白及大豆胰蛋白酶抑制劑。在一實施 例中’將編碼58P1D12變異體1之胺基酸102-11 5的肽與 KLH接合且用於使兔免疫。或者,免疫劑可包括58piD12 ® 變異體蛋白質、其類似物或融合蛋白質之全部或部分。舉 例而言,可使用重組DNA技術將58P1D12變異體1胺基酸 序列與此項技術中熟知之多種融合蛋白質搭配物(諸如麵 胱甘肽-S-轉移酶(GST)及HIS標記融合蛋白質)中之任一者 融合。在另一實施例中,使用重組技術及pET21b表現載體 將58P1D12變異體!之胺基酸22_213與His融合。接著將蛋 白質表現,純化且用於使2隻兔免疫。使用適當的親和性 ^ 基質自所誘導之細菌純化該等融合蛋白質。 可使用的其他重組細菌融合蛋白質包括麥芽糖結合蛋 白、LacZ、硫氧還蛋白、NusA或免疫球蛋白恆定區(參見 標題為「在原核系統中製備58P1D12」的章節,及CurrentThe 58P1D12 ORF or a portion thereof was cloned into pSecpc*. The psecFc vector was assembled by cloning human immunoglobulin Gl (IgG) Fc (hinge, CH2, CH3 region) into pSecTag! (Invitrogen, California). This construct produced an IgG1 Fc fusion at the carboxy terminus of the 58P1D12 protein, and at the same time fused the IgGK signal sequence to the end. A 58P1D12 fusion using the murine IgG1 Fc region can also be used. The resulting recombinant 58 piD12 protein is optimized for secretion into the culture medium of the transfected mammalian cells and can be used as an immunogen or for identifying proteins (such as ligands or receptors) that interact with the 58P1D12 protein. Protein expression is driven via the CMV promoter. The hygromyCin resistance gene present in the vector allows selection of mammalian cells expressing the recombinant protein and the ampicillin resistance gene allows selection of plastids in E. coli. pSRa construct: To produce a mammalian cell line that is constitutively expressing 58P1D12, the 58P1D12 ORF or a part thereof is selected into a construct. Double 142769.doc -181 - 201021828 tropism by transfecting the pSRa construct into the 293T_10A1 encapsulated cell line or co-transfecting pSRa with the helper plastid (containing the deletional encapsulation sequence) into 293 cells And an ecotropic retrovirus. Infection of a variety of mammalian cell lines with retroviruses results in the integration of the selected gene, 58P1D12, into the host cell line. Protein expression is driven by long terminal repeats (LTR). The neomycin resistance gene present in the vector allows selection of mammalian cells expressing the protein and the ampicillin resistance gene and the ColEl origin allow selection and maintenance of the plastid in E. coli. The retroviral vector can then be used to infect and produce a variety of cell lines, such as P C3, NIH 3T3, TsuPrl, 293 or rat-Ι cells. Additional pSRa constructs are formed that fuse the epitope tag (such as the FLAGTM tag) to the carboxy terminus of the 58?1012 sequence to allow for detection using anti-Flag antibodies. For example, the FLAGTM sequence 5' gat tac aag gat gac gac gat aag 3' (SEQ ID NO: 20) is added to the re-priming primer at the 3' end of the ORF. Other pSRa constructs were formed to generate the myc/6X His fusion protein of the amine-terminal GFP and the terminal GFP and the full-length 58P1D12 protein. Other viral vectors: Form other constructs for viral-mediated delivery and expression of 58P1D12. High viral titers that cause high expression of 58P1D12 are achieved in viral delivery systems, such as adenoviral vectors and herpes amplicon variants. The 58P1D12 coding sequence or a fragment thereof was amplified by PCR and subcultured into the AdEasy trans-t vector (Stratagene). Recombination and viral encapsulation were performed according to the manufacturer's instructions to generate an adenoviral vector. Alternatively, the 58P1D12 coding sequence or a fragment thereof is cloned into an HS V-1 vector (Imgenex) to produce a sore viral vector. The viral vector is then used to infect a variety of cell lines, such as PC3, NIH 3T3, 293 or rat-1 cells. 142769.doc -182- 201021828 Regulatory Expression System: To control the expression of 58P1D12 in mammalian cells, the coding sequence of 58P1D12 or a portion thereof is selected for regulation in mammalian expression systems, such as the T-Rex system (Invitrogen), GeneSwitch System (invitr〇gen) and tightly regulated serotonin (Sratagene). These systems allow for the study of the transient and concentration dependent effects of recombinant 58P1D12. These vectors are then used to control the performance of 58P1D12 in a variety of cell lines (such as pc), NIH 3T3, 293 or rat-sputum cells. B. Baculovirus expression system is the production of recombinant 58P1D12 protein in the baculovirus expression system, and the 58P1D12 ORF or a part thereof is selected into the baculovirus transfer vector pBlueBac 4.5 (InVitr〇gen), and the transfer vector is at the end of 1 Provide the ms_ tag. Specifically, PBlUeBaC-58PlD12 was co-transfected with the helper plastid pBac_N_Blue (Invitrogen) into SF9 (Grassland worm/r sinus) insect cells to produce recombinant baculovirus (see mvitrogen instructions for details). The baculovirus is then collected from the cell supernatant and purified by plaque assay. The recombinant 58ρ1Ε12 protein was then produced by infecting HighFive insect cells (Invhrogen) with purified baculovirus. The recombinant 58piD12 protein can be detected using an anti-58P1D12 or anti-His-labeled antibody. The 58P1D12 protein can be purified and used in a variety of cell-based assays or as an immunogen to produce polyclonal antibodies and monoclonal antibodies specific for D12. Example 6 142769.doc 183- 201021828 Antigenic distribution and distribution of primary structure amino acids, such as hydrophilicity (ΗοΡΡ τ·ρ., woods KR·, 1981. P roc. Natl. Acad. Sci. USA 78:3824-3828 Hydrophobicity (Kyte J-, Doolittle RF, 1982. J. Mol. Biol. 157: 105-132); percentage of reachable residues (Janin J., 1979 Nature 277: 491-492); average flexibility (Bhaskaran R., & P〇nnuswamy P.K., 1988. Int. J. Pept. Protein Res. 32:242-255); β-angle (Deleage, G., R〇ux B. 1 987 Protein Engineering 1 : 289-294); and other properties that may be used in this skill, such as those available on the ProtScale website, to identify the antigenic regions of each of the 58P1D12 and 58P1D12 variant proteins. The above amino acid distributions of the 58P1D12 variant were generated using the following ProtScale analysis parameters: 1) the window size was 9; 2) the center of the window tb 'the window edge weight was 100 °/. And 3) the amino acid distribution values are normalized between 〇 and 1. Hydrophilicity, hydrophobicity, and percentage distribution of reachable residues are used to determine hydrophilic fatty acid fragments (ie, hydrophilicity and percent residue distribution values greater than 〇5 denier hydrophobic distribution values less than 〇.5h. Exposure to an aqueous environment can be present on the surface of proteins, and thus can be used for immunological recognition of antibodies. Immunological recognition by antibodies. Mean flexibility and β-turn distribution determine the ammonium acid fragments that are not bound in the secondary structure (also That is, the β-turn distribution value and the average flexibility distribution value are larger than 〇.5), such as β-sheet and α-helix. These regions are also more positively exposed on the protein and thus can be used for immune recognition, such as immunological recognition by antibodies. The antigenic sequence of the torn DU variant protein indicates that an immunogen can be produced using, for example, the above 1427S9.doc-184-201021828 distribution. The immunogen can be any 5, 6, 7, 8 of the 58P1D12 protein variant listed in Figure 1. 9, 1〇, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50 or more than 50 contiguous amines Acid or a corresponding nucleic acid encoding the same. The peptide immunogen of the present invention may comprise: a peptide region comprising an amino acid position having a hydrophilic distribution value of more than 0.5, at least 5 amino acids in the figure, and an amino acid increment of any integer; including hydrophobicity a region of the amino acid having a distribution value of less than 0.5, a peptide region having at least 5 amino acids of the formula, and an amine acid group increment of any integer; including an amino acid position having a percent residue distribution greater than 0.5 a peptide region having at least one of 5 amino acids in the figure and an amino acid increment of any integer; including an amino acid position having an average flexibility distribution value greater than 0.5, and at least 5 having a pattern Amino acid, amino acid increment is any integer peptide region; and amino acid position including β-turn distribution value greater than 0.5, at least 5 amino acids in the figure, amino acid increments are any integer Peptide immunogens of the invention may also comprise a nucleic acid encoding any of the peptide regions described above. All immunogens (peptides or nucleic acids) of the invention may be embodied in human unit dosage form or may be compatible with human physiology. Pharmaceutical excipient composition The secondary structure of the 58P1D12 protein and the 58P1D12 variant (ie, the alpha helix extension and the predicted presence and location of the random coil) is based on the ΗΝΝ-hierarchical neural network method (NPS@: Network Protein Sequence Analysis TIBS 2000). Volume 25, Issue 3, March [291]: 147-15〇Combei C., Blanche C., Geourjon C. and Deldage G., https:// I42769.doc -185- 201021828 pbil.ibcp.fr/ Cgi-bin/npsa_automat.pi?page=npsa_nn.html) » The ExPasy Molecular Biology Server (https://www.expasy ch/t〇〇Is/) access is predicted by its primary amino acid sequence. Analysis showed that the 5 8p J D12 variant 1 consisted of 24.18% alpha helix, 18.68% extended strand and 57.140/. Random curl composition. 58P1D12 variant 2 consisted of 19.83% alpha helix, 18.97% extended strand and 01.21% random coil. 581>1 dying 12 variant 3 consists of 322〇%〇1 helix, 15.25% extended temple and 52.54% random coil. The possible presence of the transmembrane domain in the 58P1D12 and 58P1D12 variant proteins was analyzed using a variety of cross-flag prediction algorithms from the ExPasy Molecular Biology Server on the World Wide Web. Example 7 Production of 58P1D12 Multiple Muscles of Resistance Multiple antibodies can be produced in a mammal, for example by one or more injections of an immunizing agent and an adjuvant as needed. The immunizing agent and/or adjuvant is usually injected into the mammal by multiple subcutaneous or intraperitoneal injections. In addition to immunization with full-length 58p1Dl2 protein or 58P1D12 variant, computer algorithms can also be used to design immunogens based on kine acid sequence analysis that contain immunogenic features that are recognized by the immune system of the immunized host (see heading Examples of "antigenic distribution and secondary structure" are predicted to have hydrophilic, flexible, beta corner configurations and to be exposed on the surface of the protein. For example, a recombinant bacterial fusion protein or peptide containing a hydrophilic, flexible, beta-corner region of a 581>1012 protein variant can be used as an antigen to produce multiple antibodies in New Zealand white rabbits (New Zea丨 and White rabbhs). . For example, in the name 58P1D12 variant, the regions include (but are not limited to 142769.doc • 186 - 201021828) amino acid 19-30, amino acid 49-66, amino acid 70-82, amine The base acid 88-115, the amino acid 131-145, the amino acid 165-203, the amino acid 243-255 and the amino acid 262-273. It is suitable to combine an immunizing agent with a protein known to be immunogenic in an immunized mammal. Examples of such immunogenic proteins include, but are not limited to, keyhole spirulina (KLH), serum albumin, bovine thyroglobulin, and soybean trypsin inhibitor. In one embodiment, a peptide encoding the amino acid 102-11 5 of 58P1D12 variant 1 was conjugated to KLH and used to immunize rabbits. Alternatively, the immunizing agent may comprise all or part of a 58 piD12 ® variant protein, an analog thereof or a fusion protein. For example, the 58P1D12 variant 1 amino acid sequence can be used in recombinant DNA techniques with a variety of fusion protein partners well known in the art (such as GSH-S-transferase (GST) and HIS-labeled fusion proteins). Any one of them merges. In another embodiment, the recombinant technology and the pET21b expression vector are used to transform the 58P1D12 variant! The amino acid 22_213 is fused with His. The protein was then visualized, purified and used to immunize 2 rabbits. The fusion proteins are purified from the induced bacteria using the appropriate affinity. Other recombinant bacterial fusion proteins that may be used include maltose binding protein, LacZ, thioredoxin, NusA or immunoglobulin constant regions (see the section entitled "Preparation of 58P1D12 in prokaryotic systems", and Current)
Protocols In Molecular Biology,第 2 卷,第 16 單元, Frederick M· Ausubul等人編,1995 ; Unsley,P.S.,Brady, W., Urnes, M., Grosmaire, L., Damle, N., A Ledbetter, J.(1991) J.Exp. Med. 174, 561-566)。 除細菌來源之融合蛋白質外,亦可使用經哺乳動物表現 142769.doc -187· 201021828 之蛋白質抗原。該等坑原由哺乳動物表現載體(諸如Tag5 及Fc融合載體)表現(參見標題為「在真核系統中製備重組 58P1D12」的章節),保留轉譯後修飾,諸如存在於天然 蛋白質中之糖基化。在一實施例中,將58P1D12變異體1之 胺基酸22-213選殖入Tag5哺乳動物分泌載體内,且在293T 細胞中受到表現。藉#金屬螯合層析法自穩定表現重組載 體之293T細胞之組織塔養上清液中純化重組蛋白質。接著 將經純化之丁&§5 58卩1012蛋白質用作免疫原。 在免疫方案期間,將1抗原混合或乳化於使宿主動物之免 疫反應增強的佐劑中為適用的。佐劑之實例包括(但不限 於)完全弗氏佐劑(complete Freund's adjuvant ; CFA)及 MPL-TDM佐劑(單磷醯基脂質A-合成海藻糖二黴菌酸酯 (dicorynomycolate)) ° 在典型方案中,最切使用至多200 pg(通常100-200 gg) 與KLH接合、混於完全弗氏佐劑(CFA)中之融合蛋白質或 肽以皮下方式將兔免歿。接著,將至多200 pg(通常100-200 pg)於不完全弗氏喉劑(IFA)中之免疫原每隔兩週皮下 注入兔中。每次免疫之後大約第7- 1 0日採集測試血液,且 用於藉由ELISA監測抗血清之效價。 為測試免疫血清(諸如經58P1D12變異體1蛋白質之His融 合體免疫所得的兔血清)之反應性及特異性,將全長 58P1D12變異體1 cDNA選殖入pCDNA 3.1 myc-his表現載 體(Invitrogen,參見標題為「在真核系統中製備重組 5 8P1D12」的實例)。騍構築體轉染入293T細胞中之後,使 142769.doc •188- 201021828 用西方墨點技術經由抗58P1D12血清及抗His抗體(Santa Cruz Biotechnologies,Santa Cruz,CA)探測細胞溶胞物以 測定對變性58P1D12蛋白質之特異反應性。此外,藉由榮 光顯微術、流式細胞術及免疫沈澱法,針對293T及其他重 組58P1D12表現細胞測試免疫血清以測定天然蛋白質之特 異性a戠別。亦可使用内源性表現5 8 P1D12之細胞執行西方 墨點法、免疫沈澱法、螢光顯微術及流式細胞術以測試反 應性及特異性。 ^ 藉由在含有單獨融合搭配物或在無關融合蛋白質之背景 下之含有融合搭配物的親和管柱上通過來耗盡與融合搭配 物序列具有反應性之抗體’藉此純化來自經5 8p 1 〇 12變異 體融合蛋白質(諸如GST及MBP融合蛋白質)免疫之兔的抗 血清。舉例而言,首先藉由通過GST蛋白質與八出^“基質 (BioRad,Hercules,Calif·)共價偶聯之管柱來純化自GST_ 58P1D12變異體1融合蛋白質獲得之抗血清。接著藉由通過 φ由共價偶聯之MBP_58P1D12融合蛋白質與Affigel基質組成 的管柱來親和性純化抗也清。接著藉由蛋白質G親和層析 法將血清進一步純化以分離IgG溶離份。藉由通過由最初 蛋白質免疫原或游離肽組成之管柱基質來親和性純化來自 經His標記抗原及肽免疫之其他兔的血清以及融合搭配物 排除血清。 實例8 產生58P1D12單株抗e(MAb) 在一實施例中,針對58P1D12&58P1D12變異體之治療 142769.doc -189- 201021828 度單株抗體(「MAb」)包含與對各蛋白質特異之抗原決定 ,或對變異體之間共同序列特異之抗原歧基反應的彼等 單株抗體,其結合、内化、中斷或調節58piD12或 58P1D12變異體之生物功能,例如中斷與配體、受質及結 合搭配物之相互作用。用於產生該等MAb之免疫原包括設 計成可編碼或含有以下各者之彼等免疫原:胞外域或完整 5 8P1D12蛋白質序列、預測含有功能性基元之區域及經由 胺基酸序列之電腦分析預測具有抗原性的58piD12蛋白質 變異體之區域。免疫原包括肽及重組蛋白質,諸如tag5_ 58P1D12(—種經哺乳動物表現之純化ms標記蛋白質)或 PET-58P1D12 (—種經大腸桿菌表現之重組蛋白質)。此 外’使用經由逆轉錄病毒轉導工程改造以表現高含量 58P1D12變異體1的細胞(諸如RAT158piDi2)將小鼠免 疫。 為產生針對58P1D12之MAb,首先通常使用5-50 pg蛋白 質免疫原或混合於適當佐劑中之1〇6個與1〇7個之間的 58P1D12表現細胞在腳墊(Fp)處將小鼠免疫。用於叩免疫 之適當佐劑之實例為用於初次叩注射的TiterMax(Sigma)及 用於隨後免疫的明礬凝膠。初次注射之後,每週兩次將小 鼠免疫,直至觀測到適當的特定效價。處死後,移除淋巴 結且收穫其B細胞以供電致細胞融合用。 在免疫過程中,採集測試血液以監測免疫反應之效價及 特異性。在大多數情況下,一旦如藉由ELISA、西方墨點 法、免疫沈澱法、螢光顯微術或流式細胞術分析所測定獲 142769.doc -190- 201021828 得適當反應性及特異性,則使用電致細胞融合(ΒΤΧ, ECM2000)執行融合及融合瘤產生。 在一實施例中,本發明提供命名為Ha8-4c4.1的單株抗 體(其包含 Ha8-4c4.1 VH 及 Ha8-4c4_l VL 純系 1-B3),在本 文中稱為Ha8-4c4.1。 以上所列舉之抗體經證明可與細胞表面58P1D12反應並 結合(藉由流式細胞術證明)或與固定58P1D12反應並結合 (藉由ELISA證明)。 使用 XenoMouse techno logy® (Amgen Fremont, Fremont, CA)產生針對58P1D12之MAb,其中鼠科動物重鏈及K輕鏈 基因座已失活且人類重鏈及κ輕鏈免疫球蛋白基因座之大 部分已插入。用58PlD12-pET重組蛋白質使產生人類γΐ之 XenoMice免疫之後,產生命名為Ha8-4c4.1之MAb。 58P1D12 MAb(Ha8_4c4.1)特異性結合至表現重組 58P1D12之細胞及受表現於癌症異種移植物細胞中之内源 細胞表面58P1D12。 產生命名為Ha8-4c4.1之抗體的融合瘤已於2008年8月5 曰(經由聯邦快遞(Federal Express))送達美國菌種保存中心 (ATCC),郵箱 1549,Manassas,VA 20108,且指定寄存編 號PTA-9404。 使用 Trizol試劑(Life Technologies,Gibco BRL)自相應融 合瘤細胞中分離出mRNA之後,測定58P1D12 MAb Ha8-4c4.1之DNA編碼序列。 將總RNA純化並量化。使用Gibco BRL Superscript 142769.doc -191- 201021828Protocols In Molecular Biology, Volume 2, Module 16, Frederick M. Ausubul et al., 1995; Unsley, PS, Brady, W., Urnes, M., Grosmaire, L., Damle, N., A Ledbetter, J. (1991) J. Exp. Med. 174, 561-566). Protein antigens expressed by mammals 142769.doc -187· 201021828 can also be used in addition to fusion proteins of bacterial origin. Such pits are expressed by mammalian expression vectors (such as Tag5 and Fc fusion vectors) (see the section entitled "Preparation of recombinant 58P1D12 in eukaryotic systems"), retaining post-translational modifications such as glycosylation present in natural proteins. . In one embodiment, the amino acid 22-213 of 58P1D12 variant 1 is cloned into a Tag5 mammalian secretory vector and is expressed in 293T cells. The recombinant protein was purified from the tissue culture supernatant of 293T cells stably expressing the recombinant vector by #metal chelate chromatography. The purified D & § 5 58 卩 1012 protein was then used as an immunogen. It is suitable to mix or emulsify the 1 antigen in an adjuvant which enhances the immune response of the host animal during the immunization schedule. Examples of adjuvants include, but are not limited to, complete Freund's adjuvant (CFA) and MPL-TDM adjuvant (monophosphonyl lipid A-synthesis dicorynomycolate) ° in typical In the protocol, up to 200 pg (usually 100-200 gg) of the fusion protein or peptide mixed with KLH and mixed in complete Freund's adjuvant (CFA) is used to remove the rabbit in a subcutaneous manner. Next, up to 200 pg (usually 100-200 pg) of immunogen in incomplete Freund's laryngeal (IFA) is injected subcutaneously into the rabbit every two weeks. Test blood was collected approximately 7-10 days after each immunization and used to monitor the titer of antiserum by ELISA. To test the reactivity and specificity of immune sera (such as rabbit serum immunized with the His fusion of 58P1D12 variant 1 protein), the full-length 58P1D12 variant 1 cDNA was cloned into the pCDNA 3.1 myc-his expression vector (Invitrogen, see The title is "An example of preparing recombinant 5 8P1D12 in a eukaryotic system". After transfecting the 骒 construct into 293T cells, 142769.doc •188- 201021828 was used to detect cell lysates by anti-58P1D12 serum and anti-His antibody (Santa Cruz Biotechnologies, Santa Cruz, CA) using Western blot technique to determine the pair. Specific reactivity of denatured 58P1D12 protein. In addition, immune sera were tested against 293T and other recombinant 58P1D12 expressing cells by glory microscopy, flow cytometry, and immunoprecipitation to determine the specificity of native proteins. Western blotting, immunoprecipitation, fluorescence microscopy, and flow cytometry can also be performed using endogenous cells expressing 5 8 P1D12 to test for reactivity and specificity. Purifying the antibody reactive with the fusion partner sequence by passing it through an affinity column containing the fusion partner or in the context of an unrelated fusion protein', thereby purifying from the 5 8p 1 Antisera from rabbits immunized with 〇12 variant fusion proteins such as GST and MBP fusion proteins. For example, an antiserum obtained from a GST_58P1D12 variant 1 fusion protein is first purified by a column covalently coupled to a GST protein and a substrate (BioRad, Hercules, Calif.). φ is affinity-purified by a column consisting of a covalently coupled MBP_58P1D12 fusion protein and an Affigel matrix. The serum is then further purified by protein G affinity chromatography to isolate the IgG lysate. A column matrix composed of immunogen or free peptide to affinity purify serum from other rabbits immunized with His-tagged antigen and peptide, and fusion partners to exclude serum. Example 8 Production of 58P1D12 monoclonal anti-e (MAb) In one embodiment For the treatment of 58P1D12 & 58P1D12 variant 142769.doc -189- 201021828 degree monoclonal antibody ("MAb") contains an antigenic epitope specific for each protein, or an antigenic epitope specific for the common sequence between variants. Individual antibodies that bind, internalize, disrupt or modulate the biological functions of 58piD12 or 58P1D12 variants, such as disruption and ligand, substrate and binding The ligand interactor. The immunogens used to produce the MAbs include immunogens designed to encode or contain: an extracellular domain or an intact 5 8P1D12 protein sequence, a region predicted to contain a functional motif, and a computer via an amino acid sequence The region of the 58 piD12 protein variant with antigenicity was predicted to be analyzed. The immunogen includes peptides and recombinant proteins such as tag5_58P1D12 (a purified ms-marked protein expressed by a mammal) or PET-58P1D12 (a recombinant protein expressed by Escherichia coli). Further, mice were immunized with cells engineered by retroviral transduction to express high levels of 58P1D12 variant 1 (such as RAT158piDi2). To generate a MAb against 58P1D12, firstly, 5-50 pg of protein immunogen or a mixture of 1〇6 and 1〇7 of 58P1D12 expression cells mixed in a suitable adjuvant is used to place the mouse at the foot pad (Fp). Immunity. Examples of suitable adjuvants for sputum immunization are TiterMax (Sigma) for primary sputum injection and alum gel for subsequent immunization. After the initial injection, the mice were immunized twice a week until the appropriate specific potency was observed. After sacrifice, the lymph nodes were removed and their B cells were harvested for power to induce cell fusion. During the immunization process, test blood is collected to monitor the titer and specificity of the immune response. In most cases, once 142769.doc -190-201021828 is properly reacted and specific as determined by ELISA, Western blot, immunoprecipitation, fluorescence microscopy or flow cytometry analysis, Fusion and fusion tumor production were performed using electro-cell fusion (ΒΤΧ, ECM2000). In one embodiment, the invention provides a monoclonal antibody designated Ha8-4c4.1 (which comprises Ha8-4c4.1 VH and Ha8-4c4_l VL pure line 1-B3), referred to herein as Ha8-4c4.1 . The antibodies listed above were shown to react with and bind to cell surface 58P1D12 (as evidenced by flow cytometry) or to bind to fixed 58P1D12 (as evidenced by ELISA). MAbs against 58P1D12 were generated using XenoMouse technology® (Amgen Fremont, Fremont, CA), where the murine heavy and K light chain loci have been inactivated and most of the human heavy and kappa light chain immunoglobulin loci Inserted. After immunizing XenoMice, which produces human gamma, with 58P1D12-pET recombinant protein, a MAb designated Ha8-4c4.1 was produced. 58P1D12 MAb (Ha8_4c4.1) specifically binds to cells expressing recombinant 58P1D12 and is endogenous cell surface 58P1D12 expressed in cancer xenograft cells. The fusion tumor producing the antibody named Ha8-4c4.1 was delivered to the American Type Culture Collection (ATCC) on August 5, 2008 (via Federal Express), mailbox 1549, Manassas, VA 20108, and designated Deposit number PTA-9404. After isolation of mRNA from the corresponding fused tumor cells using Trizol reagent (Life Technologies, Gibco BRL), the DNA coding sequence of 58P1D12 MAb Ha8-4c4.1 was determined. Total RNA was purified and quantified. Use Gibco BRL Superscript 142769.doc -191- 201021828
Preamplification 系統經由 oligo (dT) 12-18 致敏自總 RNA 產 生第一股cDNA。使用人類免疫球蛋白可變重鏈引子及人 類免疫球蛋白可變輕鏈引子擴增第一股cDNA。將PCR產 物選殖入pCRScript載體(Stratagene)内。對純系定序且測 定重鏈可變區及輕鏈可變區。 重鏈可變區及輕鏈區之核酸及胺基酸序列列於圖2及圖3 中。58P1D12抗體與人類Ig生殖系之比對列於圖4A-圖4C 中〇 實例9 篩檢、鑑別及表徵58P1D12 MAb 使用此項技術中已知之檢定之組合來篩檢、鑑別及表徵 利用標題為「產生58P1D12單株抗體(MAb)」之實例中所 列之程序所產生的抗體,該等檢定包括ELISA、FACS、藉 由表面電漿共振(BIAcore)(「SPR」)之親和性分級、抗原 決定基分類、與重組58P1D12之親和性及細胞表面上表現 之58P1D12。 A.藉由FACS進行58P1D12人類MAb篩檢 藉由FACS分析對針對58P1D12之MAb執行初次融合瘤篩 檢。篩檢方案如下:將50微升/孔之融合瘤上清液(純淨物) 或純化抗體(連續稀釋物)添加至96孔FACS盤中且與 58P1D12表現細胞(内源或重組細胞,50,000個細胞/孔)混 合。將混合物在4°C下培育兩小時。在培育結束時,用 FACS緩衝液洗滌細胞且在4。。下與1 〇〇 μΐ偵測抗體(抗hlgG-PE) —起培育45分鐘。培育結束時,將細胞用FACS緩衝液 142769.doc -192- 201021828 洗蘇,用甲搭固定且使用FACScan分析。使用CellQuest Pro軟體分析資料。 將自初次篩檢所鑑別之陽性融合瘤轉移至24孔盤中且收 集上清液用於驗證性篩檢。使用FACS分析及此項技術中 已知的其他方法完成驗證性篩檢。 B. 藉由ELISA進行58P1D12人類MAb篩檢 藉由ELISA篩檢58P1D12 MAb以測定抗體同種型。所用 篩檢方案如下:用Tag5-58P1D12-ECD或抗hlgG抗體塗覆 ❹ ELISA盤。將數組測試抗體添加在盤上且培育1小時。將 盤洗滌以洗去未結合之抗體之後,用以下HRP接合偵測抗 體偵測所結合之抗體:抗hlgGl、抗hIgG2、抗hlgK及抗 hlgL。 C. 藉由SPR進行58P1D12人類MAb篩檢 SPR容許對蛋白質-蛋白質相互作用之動力學及親和性進 行鑑別及即時表徵且因此為選擇及表徵針對所需之標靶抗 原之MAb的有用技術。SPR分析用於對融合瘤上清液及針 對58P1D12之純化MAb進行篩檢及表徵。如下藉由SPR生 物感測器(31八〇〇^ 3 000)對針對58卩1012之]^八13進行融合瘤 篩檢:將經試驗緩衝液(HBS-P,10 pg/ml BSA)稀釋至1.5-2 pg/ml之50微升/孔融合瘤上清液(純淨物)添加至96孔盤 (BIAcore)中,且經由共價固定於CM5感測器晶片之表面上 的山羊抗人類FcY pAb捕獲MAb(20 μΐ)。每次試驗(循環)經 由流槽之通道2、3及4測試三(3)種含MAb融合瘤上清液, 其中通道1留作非特異性結合之參考。在各單獨通道中量 142769.doc -193- 201021828 測抗原與所捕獲之MAb之結合之前,將60 μΐ試驗緩衝液以 20 μΐ/min之流率注射在晶片表面上以用作所捕獲之MAb基 線偏移之參考。接著將60微升(60 μΐ)之150 nM經純化之重 組58P1D12以20 μΐ/min之相同流率注射在晶片表面上以量 測抗原結合。每一輪抗原結合至MAb之後,經由注射100 mM磷酸(歷時1分鐘)使表面再生,以使所捕獲之任何MAb 自表面剝離。 使用 BiaEvaluation 4.1 及 CLAMP軟體(Myszka及 Morton, 1 998)執行資料分析。扣減參考並將反應標準化為所捕獲 Θ MAb之含量之後,使用1:ι結合模型將資料全面擬合。 經由結合速率常數及解離速率常數計算親和性。如一般 技術者顯而易見,慢解離速率一般表明對MAb之總親和性 較高。初步親和性資料及解離速率用作針對58P1D12之治 療性MAb之選擇標準的基礎。 D.藉由FACS進行親和性測定 測試Ha8-4c4.1與3T3細胞上所表現之5 8PID 12(亦即3T3- 〇 58P1D12)的結合親和性。簡而言之,在4°C下將十五(15)種胃 連續1:2稀釋之純化Ha8-4c4.1 MAb以80 nM至0·0049 nM之 最終濃度與3T3-58P1 d 12細胞(每孔50,000個細胞)一起培育 隔夜。培育結束時,將細胞洗滌且在4°C下與抗hlgG-PE偵 測抗體一起培育45分鐘。將未結合的偵測抗體洗去之後, 藉由FACS分析細胞。獲得如表vi(A)中所列之平均螢光強 度(MFI)值。將MFI值輸入Graphpad Prisim軟體且利用 Y=Bmax*X/(Kd+X)之一點結合(雙曲線)方程式進行分析以 142769.doc -194- 201021828 產生表VI(B)中所示之Ha8-4c4 1 4c4.1與58P1D12啬女姑厶b#沾 兔和曲線。Bmax為Ha8-The Preamplification system sensitizes the first strand of cDNA from total RNA via oligo (dT) 12-18. The first strand of cDNA was amplified using a human immunoglobulin variable heavy chain primer and a human immunoglobulin variable light chain primer. The PCR product was cloned into the pCRScript vector (Stratagene). The pure line is sequenced and the heavy chain variable region and the light chain variable region are determined. Nucleic acid and amino acid sequences of the heavy chain variable region and the light chain region are shown in Figures 2 and 3. The ratio of the 58P1D12 antibody to the human Ig germline is shown in Figures 4A-4C. Example 9 Screening, Identification, and Characterization 58P1D12 MAb Screening, identification, and characterization using a combination of assays known in the art Antibodies produced by the procedures set forth in the 58P1D12 monoclonal antibody (MAb) examples, including ELISA, FACS, affinity characterization by surface plasmon resonance (BIAcore) ("SPR"), antigen determination Base classification, affinity with recombinant 58P1D12 and 58P1D12 on the cell surface. A. 58P1D12 Human MAb Screening by FACS A primary fusion tumor screening was performed on MAb against 58P1D12 by FACS analysis. The screening protocol was as follows: 50 μl/well of the fusion supernatant (purified) or purified antibody (continuous dilution) was added to a 96-well FACS plate and expressed with 58P1D12 (endogenous or recombinant cells, 50,000) Cell/well) mixed. The mixture was incubated at 4 ° C for two hours. At the end of the incubation, the cells were washed with FACS buffer and at 4. . The cells were incubated with 1 〇〇 μΐ detection antibody (anti-hlgG-PE) for 45 minutes. At the end of the incubation, the cells were washed with FACS buffer 142769.doc -192-201021828, fixed with a nail and analyzed using FACScan. Analyze data using the CellQuest Pro software. Positive fusion tumors identified from the initial screening were transferred to 24-well plates and supernatants were collected for confirmatory screening. Confirmatory screening is performed using FACS analysis and other methods known in the art. B. 58P1D12 Human MAb Screening by ELISA The 58P1D12 MAb was screened by ELISA to determine antibody isotypes. The screening protocol used was as follows: ❹ ELISA plate was coated with Tag5-58P1D12-ECD or anti-hlgG antibody. Array test antibodies were added to the plates and incubated for 1 hour. After washing the disc to wash away unbound antibody, the antibody bound to the antibody was detected by the following HRP ligation: anti-hlgGl, anti-hIgG2, anti-hlgK and anti-hlgL. C. 58P1D12 Human MAb Screening by SPR SPR allows for the identification and immediate characterization of the kinetics and affinity of protein-protein interactions and is therefore a useful technique for selecting and characterizing MAbs for the desired target antigen. SPR analysis was used to screen and characterize the fusion tumor supernatant and purified MAb against 58P1D12. The fusion tumor screening for 58卩1012]^8 13 was performed by SPR biosensor (31 〇〇^ 3 000) as follows: diluted with test buffer (HBS-P, 10 pg/ml BSA) 50 μl/well of fusion tumor supernatant (purified) to 1.5-2 pg/ml was added to a 96-well plate (BIAcore) and via a goat anti-human covalently immobilized on the surface of a CM5 sensor wafer FcY pAb captures MAb (20 μΐ). Three (3) MAb-containing fusion tumor supernatants were tested for each test (cycle) via channels 2, 3 and 4 of the flow cell, with channel 1 remaining as a reference for non-specific binding. In each individual channel, 142769.doc -193- 201021828 before the binding of the antigen to the captured MAb, 60 μL of assay buffer was injected onto the surface of the wafer at a flow rate of 20 μΐ/min for use as the captured MAb. Reference to baseline offset. Sixty microliters (60 μM) of 150 nM purified recombinant 58P1D12 was then injected onto the surface of the wafer at the same flow rate of 20 μΐ/min to measure antigen binding. After each round of antigen binding to the MAb, the surface was regenerated by injection of 100 mM phosphoric acid (for 1 minute) to allow any MAb captured to detach from the surface. Data analysis was performed using BiaEvaluation 4.1 and CLAMP software (Myszka and Morton, 1 998). After deducting the reference and normalizing the reaction to the amount of captured Θ MAb, the data was fully fitted using a 1:ι binding model. Affinity is calculated via the binding rate constant and the dissociation rate constant. As is apparent to those skilled in the art, the slow off rate generally indicates a higher total affinity for MAb. Preliminary affinity data and dissociation rates were used as the basis for selection criteria for the therapeutic MAb of 58P1D12. D. Affinity determination by FACS The binding affinity of Ha8-4c4.1 to 5 8 PID 12 (i.e., 3T3-〇 58P1D12) expressed on 3T3 cells was tested. Briefly, fifteen (15) samples of the purified Ha8-4c4.1 MAb diluted 1:2 at 4 ° C at a final concentration of 80 nM to 0·0049 nM with 3T3-58P1 d 12 cells ( Cultivate overnight with 50,000 cells per well. At the end of the incubation, the cells were washed and incubated with anti-hlgG-PE detection antibody for 45 minutes at 4 °C. After washing the unbound detection antibody, the cells were analyzed by FACS. The average fluorescence intensity (MFI) values as listed in Table vi (A) were obtained. Enter the MFI value into Graphpad Prisim software and analyze it with one point combination (hyperbolic) equation of Y=Bmax*X/(Kd+X) to produce Ha8- shown in Table VI(B) with 142769.doc -194- 201021828 4c4 1 4c4.1 and 58P1D12 啬 female aunt b# dip rabbit and curve. Bmax is Ha8-
Ε·藉由SPR進行親和性測定 藉由 SPR(Biac〇re 3000)測試 組58P1D12的結合親和性。簡而言之,將 ® 獲於CM5感測器晶片表面上。平均而言 12 MAb與經純化之重 將 58P1D12 MAb捕 每輪捕獲約150 RU之58P1D12 MAb。將一系列在1 nM至200 nM範圍内的 5-6種重組58P1D12稀釋液注射在此表面上以產生結合曲線 (真耳測試(sensogram)),使用 BiaEvaluation(Biacore,Inc·) 或CLAMP軟體(Myszka及Morton,1998)將結合曲線與1:1相 互作用模型全面擬合。利用方程式KD=kdiss/kassoc確定 58P1D12 MAb之親和性,其係以藉由解離速率常數及結合 速率常數所定義之KD表示。親和性資料及解離速率以及藉 由FACS進行之親和性分析(參見上述D部分)為針對 58P1D12之MAb之選擇標準的部分。 實例10 抗Λ免疫介導型細胞毒性 ADCC(抗體依賴性細胞之細胞毒性)為對與靶向特異性 細胞表面抗原之抗體所結合之細胞的免疫介導型溶胞侵 妨。免疫細胞經由結合至白細胞、單核細胞及NK細胞之 表面上之Fey受體來識別抗體之Fc部分,從而引發導致細 142769.doc -195· 201021828 胞死亡之溶胞侵蝕。簡而言之,將經工程改造以表現標靶 抗原58P1D12之細胞在活體外與鉻一起培育}小時。用新 鮮培養基洗滌之後,將經標記之細胞與2·5 mg/mI針對 58P1D12之人類MAb及新近分離之周圍血液單核細胞在不 同的效應細胞與標靶細胞比率(E:T比)下一起培育。在37。〇 下歷時4小時之後,將細胞輕緩地離心且於p計數器中對含 有自死細胞釋放之51Cr的上清液進行計數。 結果證明,當增大效應細胞與標靶細胞比率(Ε:τ)時, 依賴抗體之殺死細胞作用增強。 實例11 產生F(ab’)2片段Ε·Affinity determination by SPR The binding affinity of the group 58P1D12 was tested by SPR (Biac〇re 3000). In short, ® is obtained on the surface of the CM5 sensor wafer. On average, 12 MAb and purified weight 58P1D12 MAb captures about 150 RU of 58P1D12 MAb per round. A series of 5-6 recombinant 58P1D12 dilutions ranging from 1 nM to 200 nM were injected onto this surface to generate binding curves (sensogram) using BiaEvaluation (Biacore, Inc.) or CLAMP software ( Myszka and Morton, 1998) fully fit the binding curve to the 1:1 interaction model. The affinity of the 58P1D12 MAb was determined using the equation KD = kdiss / kassoc, expressed as KD as defined by the dissociation rate constant and the binding rate constant. Affinity data and dissociation rates and affinity analysis by FACS (see Section D above) are part of the selection criteria for the MAb of 58P1D12. Example 10 Anti-Infectious Immune-Mediated Cytotoxicity ADCC (antibody-dependent cellular cytotoxicity) is an immune-mediated lytic cytotoxicity against cells that bind to antibodies that target specific cell surface antigens. The immune cells recognize the Fc portion of the antibody via binding to the Fey receptor on the surface of leukocytes, monocytes, and NK cells, thereby causing lytic erosion leading to cell death of 142769.doc -195·201021828. Briefly, cells engineered to express the target antigen 58P1D12 were incubated with chromium for 1 hour in vitro. After washing with fresh medium, the labeled cells were combined with 2.5 mg/mI of human MAb against 58P1D12 and newly isolated peripheral blood mononuclear cells at different effector-target cell ratios (E:T ratio). Cultivate. At 37. After 4 hours, the cells were gently centrifuged and the supernatant containing 51Cr released from dead cells was counted in a p-counter. The results demonstrate that when the ratio of effector cells to target cells is increased (Ε:τ), antibody-dependent killing of cells is enhanced. Example 11 Generation of F(ab')2 Fragment
產生MAb之F(ab’)2片段可用於研究保留其二價抗原結合 位點、但缺少免疫效應Fc結構域2MAb分子在活體外及活 體内治療模型中的作用。方案如下:在存在及不存在固定 胃蛋白酶(Pierce. R〇ckford 111〇 的情況下將 2〇 mgK2〇 mM 乙酸鈉緩衝液(pH 4.5)中之MAb HI-1.10培育指定時間。藉 由蛋白質A層析法移除完整MAb及經消化之Fc片段。觀測 到未消化之完整MAb不減少、在指定時間所採集之已消化 物質之等分試樣不減少及最後消化之F(ab,)2產物之樣本減 少的SDS-PAGE庫馬斯染色凝膠(coomasie stained gel)。此 試劑可用於治療具有表現58P1D12之腫瘤的動物。經由此 抗體片段所觀測之抗腫瘤活性可將固有生物活性與藉由免 疫依賴性機制所介導之活性區別開來。 此試劑亦可在免疫組織化學法、ELISA及其他診斷免疫 J42769.doc •196- 201021828 檢定中用於偵測58P1D12蛋白質。 實例12 利用重组DNA方法表現人類MAb 為在經轉染之細胞中重組表現58P1D12 MAb,將 5 8P1D12 MAb可變重鏈及輕鏈序列分別選殖於人類重鏈 IgGl及輕鏈IgK恆定區之上游處。經由選殖載體將完整的 58P1D12 MAb人類重鏈及輕鏈序列盒選殖於CMV啟動子/ 強化子之下游處。MAb編碼序列之下游包括聚腺苷酸化位 ® 點。將表現重組58P1D12 MAb之構築體轉染入293T、Cos 及CHO細胞中。對重組細胞所分泌之58P1D12 MAb與細胞 表面58P1D12之結合進行評估。 實例13 活醴外58P1D12 MAb抑制研究 增強之遷移及侵入為癌細胞表現型之標誌。因此,活體 外評估58P1D12 MAb以判定對細胞遷移及細胞侵入之影 響。 — MAb Ha8-4c4.1抑制艙瘤細胞遷移及侵入 使用MDCK/58P1D12細胞以Boyden Transwell腔室遷移 檢定評估58P1D12 MAb Ha8-4c4.1對細胞遷移之影響。藉 由將 4xl04 個於 0.1% FBS 加 25 pg/mL 對照 MAb 或 MAb Ha8-4。4.1中之1^10(1;1(758?1012細胞塗於8〇7(16111^3118评611設備 之上腔室内且容許細胞向下腔室中之10% FBS遷移16個小 時來評估遷移。用鈣黃綠素AM染料(Calcein AM dye)將俘 獲於底部過濾器上的細胞標記30分鐘且攝影。經由 142769.doc -197- 201021828The F(ab')2 fragment that produces the MAb can be used to study the role of the 2MAb molecule retaining its bivalent antigen binding site but lacking the immune effect Fc domain in an in vitro and in vivo therapeutic model. The protocol was as follows: MAb HI-1.10 in 2 mg of mg2 mM sodium acetate buffer (pH 4.5) was incubated for a specified time in the presence and absence of immobilized pepsin (Pierce. R〇ckford 111〇.) by Protein A Chromatography removes intact MAb and digested Fc fragments. Observed that undigested intact MAb is not reduced, aliquots of digested material collected at the specified time are not reduced and finally digested F(ab,)2 SDS-PAGE Coomasie stained gel with reduced sample of the product. This reagent can be used to treat animals with tumors exhibiting 58P1D12. The anti-tumor activity observed by this antibody fragment can be used to intrude biological activity. The activity mediated by the immune-dependent mechanism is distinguished. This reagent can also be used to detect 58P1D12 protein in immunohistochemistry, ELISA, and other diagnostic immunizations J42769.doc • 196-201021828. Example 12 Recombinant DNA Methods The human MAb was recombined to express 58P1D12 MAb in transfected cells, and the 5 8P1D12 MAb variable heavy and light chain sequences were separately selected from human heavy chain IgG1 and light chain IgK constant. Upstream of the region, the entire 58P1D12 MAb human heavy and light chain cassette was cloned downstream of the CMV promoter/enhancer via the selection vector. The downstream of the MAb coding sequence includes the polyadenylation site® point. The constructs expressing recombinant 58P1D12 MAb were transfected into 293T, Cos and CHO cells. The binding of 58P1D12 MAb secreted by recombinant cells to cell surface 58P1D12 was evaluated. Example 13 Activity outside 58P1D12 MAb inhibition studies Enhanced migration and invasion It is a hallmark of cancer cell phenotype. Therefore, the 58P1D12 MAb was evaluated in vitro to determine the effects on cell migration and cell invasion. — MAb Ha8-4c4.1 inhibits the migration and invasion of chamber cells using MDCK/58P1D12 cells in the Boyden Transwell chamber. The migration assay evaluates the effect of 58P1D12 MAb Ha8-4c4.1 on cell migration by adding 4xl04 to 0.1% FBS plus 25 pg/mL of control MAb or MAb Ha8-4. 1 of 10 in 4.1 (1; 1 (758 1012 cells were applied to the chamber of 8〇7 (16111^3118, 611 equipment and allowed to migrate 10% of the FBS in the lower chamber for 16 hours to assess migration. Calcein AM dye will be used Capture Cells were labeled for 30 min and photography on the bottom of the filter via the 142769.doc -197- 201021828
MetaMorph成像軟體量化細胞螢光(遷移)之量。如圖5中所 示,MAb Ha8-4c4.1抑制細胞遷移達約45%,而陰性對照 MAb不抑制細胞遷移(*ρ<〇.〇〇〇ι)。 此外’評估58P1D12 MAb Ha8-4c4.1對腫瘤細胞侵入之 影響。在此檢定中,用一層供細胞侵入用之Matrigel®塗佈 Boyden Transwell腔室。將MAb Ha8-4c4.1或同種型匹配對 照MAb (25 pg/mL)添加至塗有Matrigel®之設備上腔室内的 0.1% FBS 中之 4xl04 個OVCAR-5/58P1D12細胞中。容許該 等細胞向裝載於下腔室内之10% FBS侵入24小時。用鈣黃 綠素AM染料將結合至底部過濾器的細胞標記30分鐘且攝 影。如圖6中所示,與對照MAb相比,MAb Ha8-4c4.1顯著 抑制細胞侵入達75°/。(*p<〇.〇〇01)。 比較58P1D12 MAb之活髏外功能活性 以腫瘤細胞遷移及腫瘤細胞侵入檢定測試完全人類 58P1D12 MAb Ha8-4c4.1(YlK) 、Ηα8-6·1(γ2κ)及 Ha8- 7·1(γ1κ)。 使用MDCK/58P1D12細胞以Boyden Transwell腔室遷移 檢定評估艘瘤細胞遷移。藉由將4x1 〇4個於〇_1 % FBS加25 pg/mL 對照 MAb 或 5 8P1D12 MAb 中之 MDCK/5 8P1D12 細胞 塗於Boyden Transwell設備之上腔室内且容許該等細胞向 下腔室中之1 〇% FBS遷移16小時來評估遷移。用鈣黃綠素 AM染料將俘獲於底部過濾器上的細胞標記30分鐘且攝 影。經由MetaMorph成像軟體量化細胞榮光(遷移)之量。 結果表明,Ha8-4c4.1及Ha8-7.1 MAb抑制細胞遷移’而 142769.doc -198- 201021828The MetaMorph imaging software quantifies the amount of cellular fluorescence (migration). As shown in Figure 5, MAb Ha8-4c4.1 inhibited cell migration by about 45%, while the negative control MAb did not inhibit cell migration (*ρ<〇.〇〇〇ι). In addition, the effect of 58P1D12 MAb Ha8-4c4.1 on tumor cell invasion was evaluated. In this assay, a Boyden Transwell chamber was coated with a layer of Matrigel® for cell invasion. MAb Ha8-4c4.1 or isotype matched MAb (25 pg/mL) was added to 4xl04 OVCAR-5/58P1D12 cells in 0.1% FBS in the upper chamber of the Matrigel®-coated device. These cells were allowed to invade for 10 hours at 10% FBS loaded in the lower chamber. Cells bound to the bottom filter were labeled with calcein AM dye for 30 minutes and photographed. As shown in Figure 6, MAb Ha8-4c4.1 significantly inhibited cell invasion by up to 75°/ compared to control MAb. (*p<〇.〇〇01). Comparison of the active functional activity of 58P1D12 MAb The complete human 58P1D12 MAb Ha8-4c4.1 (YlK), Ηα8-6·1 (γ2κ) and Ha8-7·1 (γ1κ) were tested by tumor cell migration and tumor cell invasion assay. Migration of tumor cells was assessed using the MDCK/58P1D12 cells in a Boyden Transwell chamber migration assay. Apply 4x1 〇4 of CK_1% FBS plus 25 pg/mL of control MAb or MDP/5 8P1D12 cells in 5 8P1D12 MAb to the chamber above the Boyden Transwell device and allow the cells to be in the lower chamber 1%% FBS migrated for 16 hours to assess migration. The cells captured on the bottom filter were labeled with calcein AM dye for 30 minutes and photographed. The amount of cell glory (migration) was quantified via the MetaMorph imaging software. The results indicate that Ha8-4c4.1 and Ha8-7.1 MAb inhibit cell migration' 142769.doc -198- 201021828
Ha8-6.1 MAb不抑制遷移。 使用塗有一層供細胞侵入用之Makigel®的B〇yden Trans well腔室評估腫瘤細胞侵入。簡而言之’將5 8P1D12 MAb或同種型匹配對照MAb(25 pg/mL)添加至塗有 Matrigel®之設備上腔室内的0.1% FBS中之4χ104個OVCAR-5/58P1D12細胞中。容許該等細胞向裝載於下腔室内之 10% FBS侵入24小時。用鈣黃綠素AM染料將結合至底部 過濾器的細胞標記30分鐘且攝影。 ® 結果表明,Ha8-4c4.1及Ha8-6.1 MAb抑制腫瘤細胞侵 入,而Ha8-7.1 MAb不抑制侵入。(圖7)。 MAb Ha8-4c4.1抑制58P1D12誘導之HUVEC管形成 測試 MAb Ha8-4c4.1 對 58P1D12 ECD 誘導之 HUVEC 管形 成的影響。將重組58P1D12 ECD(3 gg/mL)與30 pg/mL之同 種型匹配對照MAb或MAb Ha8-4c4.1—起添加至0.1% FBS 中之HUVEC(5xl04個/孔)中。接著將該等細胞塗於 Matrigel®上且容許形成管達16小時。如圖8中所示,對照 MAb不影響58P1D12 ECD誘導之HUVEC管形成,而MAb Ha8-4c4.1抑制管形成達50%(*p=0.005)。 總而言之,該等資料證明,MAb Ha8-4c4.1在活體外對 58P1D12功能呈現強抑制活性。藉由表現58P1D12所誘導 之彼等功能(遷移及侵入)及藉由添加ECD蛋白質所產生之 彼等功能(管形成)被MAb有力地抑制。該等結論支持以靶 向表現58P1D12之癌症的治療形式使用MAb Ha8-4c4.1。 針對活想外HUVEC管形成對58P1D12 MAb進行比較 142769.doc -199· 201021828 以HUVEC管形成檢定測試完全人類58卩1012]^八13 1^8-4ο4.1(γ1κ)、Ηα8-6.1(γ2κ)及 Ha8-7.1(YlK)。簡而言之,將 重組 58P1D12 ECD(3 pg/mL)與 30 pg/mL之 58P1D12 MAb Ha8-4c4.1、Ha8-6.1 或 Ha8-6.1— 起添加至 0.1% FBS 中之 HUVEC(5xl04個/孔)中。接著將該等細胞塗於Matrigel®上 且容許形成管達16小時。計算管數。結果表明,所有三種 5 8P1D12 MAb皆抑制管形成,表示為(+)。(圖9)。 實例14 抗艟介導之二次殺死作用 58P1D12 MAb介導3T3-58P1D12細胞中之沙泊寧 (saporin)依賴性殺死作用。第1日將3T3-58P1D12細胞 (1000個細胞/孔)接種於96孔盤中。次曰,將含有1倍濃度 之指定一級抗體連同2倍過量之與沙泊寧毒素(AdvancedThe Ha8-6.1 MAb does not inhibit migration. Tumor cell invasion was assessed using a B〇yden Transwell chamber coated with a layer of Makigel® for cell invasion. Briefly, 5 8P1D12 MAb or isotype matched control MAb (25 pg/mL) was added to 4 χ 104 OVCAR-5/58P1D12 cells in 0.1% FBS in a chamber coated with Matrigel®. These cells were allowed to invade for 10 hours at 10% FBS loaded in the lower chamber. Cells bound to the bottom filter were labeled with calcein AM dye for 30 minutes and photographed. ® results indicate that Ha8-4c4.1 and Ha8-6.1 MAb inhibit tumor cell invasion, while Ha8-7.1 MAb does not inhibit invasion. (Figure 7). MAb Ha8-4c4.1 inhibits 58P1D12-induced HUVEC tube formation. The effect of MAb Ha8-4c4.1 on 58P1D12 ECD-induced HUVEC tube formation. Recombinant 58P1D12 ECD (3 gg/mL) was added to HUVEC (5 x 104/well) in 0.1% FBS with 30 pg/mL of the isotype matched control MAb or MAb Ha8-4c4.1. The cells were then applied to Matrigel® and allowed to form tubes for 16 hours. As shown in Figure 8, control MAb did not affect 58P1D12 ECD-induced HUVEC tube formation, while MAb Ha8-4c4.1 inhibited tube formation by 50% (*p=0.005). Taken together, these data demonstrate that MAb Ha8-4c4.1 exhibits potent inhibitory activity against 58P1D12 function in vitro. Their functions (migration and invasion) induced by the expression of 58P1D12 and their function (tube formation) by the addition of ECD proteins are strongly inhibited by MAb. These conclusions support the use of MAb Ha8-4c4.1 in the form of treatment targeting cancers that exhibit 58P1D12. Comparison of 58P1D12 MAb for HUVEC tube formation 142769.doc -199· 201021828 for HUVEC tube formation assay. Complete human 58卩1012]^8 13 1^8-4ο4.1(γ1κ), Ηα8-6.1(γ2κ ) and Ha8-7.1 (YlK). Briefly, recombinant 58P1D12 ECD (3 pg/mL) was added to 30 Pg/mL of 58P1D12 MAb Ha8-4c4.1, Ha8-6.1 or Ha8-6.1 to HUVEC in 0.1% FBS (5xl04/ In the hole). The cells were then applied to Matrigel® and allowed to form tubes for 16 hours. Calculate the number of tubes. The results showed that all three 5 8P1D12 MAbs inhibited tube formation, expressed as (+). (Figure 9). Example 14 Anti-caries-mediated secondary killing 58P1D12 MAb mediates saporin-dependent killing in 3T3-58P1D12 cells. On day 1, 3T3-58P1D12 cells (1000 cells/well) were seeded in 96-well plates. Secondary sputum, will contain 1x concentration of the designated primary antibody together with a 2-fold excess of Sabinin toxin (Advanced
Targeting Systems,San Diego,CA)接合之抗人類(Hum-Targeting Systems, San Diego, CA) Jointed against humans (Hum-
Zap)或抗山羊(Gt Ig Sap)多株抗體的等體積培養基添加至 各孔中。將該等細胞在攝氏37度下培育4天。培育期結束 時,將阿拉馬藍(Biosource)添加至各孔中且繼續培育額外 4小時。在530 nm下激發之後,測定三份重複樣本在590 nm下之螢光發射。 圖10之結果表明,58P1D12抗體Ha8-4c4.1介導3丁3-5 8P1D12細胞中之沙泊寧依賴性細胞毒性,而對照非特異 性人類IgGl(H3-1.4.1.2)則無影響。該等結果表明,可使用 適當的抗58P1D12 MAb(例如Ha8_4c4.1)將藥物或細胞毒性 蛋白質選擇性地傳遞至表現3T3-58P1D12及其他58P1D12 142769.doc -200- 201021828 的細胞中。An equal volume of medium of Zap) or anti-goat (Gt Ig Sap) polyclonal antibody was added to each well. The cells were incubated for 4 days at 37 degrees Celsius. At the end of the incubation period, Biosource was added to each well and incubation continued for an additional 4 hours. After excitation at 530 nm, the fluorescence emission of three replicate samples at 590 nm was determined. The results in Figure 10 indicate that the 58P1D12 antibody Ha8-4c4.1 mediates saporin-dependent cytotoxicity in 3 3-5 8P1D12 cells, whereas the control non-specific human IgG1 (H3-1.4.1.2) has no effect. These results indicate that a drug or cytotoxic protein can be selectively delivered to cells expressing 3T3-58P1D12 and other 58P1D12 142769.doc-200-201021828 using an appropriate anti-58P1D12 MAb (e.g., Ha8_4c4.1).
實例15 58P1D12腫瘤生長促進之活β内檢定 藉由評估腫瘤形成及表現58P1D12或缺乏58P1D12之細 胞之生長來活體内評估58P1D12蛋白質對腫瘤細胞生長之 影響。舉例而言’將含有tkNeo空載體或58P1D12之3Τ3或 卵巢癌細胞株皮下注入SCID小鼠各側腹。可使用至少兩種 策略:(1)在啟動子調控下組成性表現58P1D12,啟動子諸 如為自病毒(諸如多瘤病毒、禽痘病毒(1989年7月5曰公開 的UK 2,211,504)、腺病毒(諸如腺病毒2)、牛乳頭狀瘤病 毋、禽肉瘤病毒、細胞巨大病毒、逆轉錄病毒、B型肝炎 病毒及猴病毒4〇(SV40))基因組獲得之組成性啟動子,或 異源哺乳動物啟動子’例如肌動蛋白啟動子或免疫球蛋白 啟動子,限制條件為該等啟動子與宿主細胞系統相容;及 (2)在可誘導性載體系統控制下調控表現,諸如蛻皮激素 (ecdysone)、四環素(tetracycline)等,限制條件為該等啟動 子與宿主細胞系統相容。 接著在可觸知之腫瘤出現時藉由測徑規量測法監測腫瘤 體積’且隨時間跟蹤以測定58P1D12表現細胞是否以更快 速率生長及58P1D12表現細胞所產生之腫瘤是否顯示侵害 性變化之特徵(例如轉移增加、血管形成、對化學治療藥 物之反應性減,j、)。 此外,可將相同細胞正位植入小鼠中以測定58p丨D〖2是 否對腹膜内之局部生長有影響及58P1D12是否影響細胞轉 142769.doc -201· 201021828 移之能力(Miki T等人,Oncol Res. 2001; 12:209 ; Fu X等 人,Int J Cancer. 1991, 49:938)。藉由脛骨内注射卵巢或 前列腺腫瘤細胞來評估58P1D12對腫瘤形成及生長之影 響。 此檢定亦可用於測定候選治療性組合物(諸如58P1D12胞 内抗體、58P1D12反義分子及核酶)之58P1D12抑制作用。 實例16 58P1D12單株抗艘抑制活髏内腫瘤生長 58P1D12在腫瘤組織之細胞表面上的顯著表現以及其在 正常組織中之限制性表現使得58P1D12成為抗體療法之優 良標靶。類似地,58P1D12為基於T細胞之免疫療法之標 靶。因此,評估58P1D12 MAb在人類卵巢癌異種移植小鼠 模型及人類前列腺癌異種移植小鼠模型中的治療功效。 以小鼠癌症異種移植模型(例如皮下、脛骨内及腹膜内) 研究抗體對腫瘤生長及轉移形成之功效。抗體可如本實例 中所述未接合,或如此項技術中所瞭解可與治療性形式接 合。 藉由將以 1:1 稀釋度與 Matrigel(Collaborative Research) 混合的5χ l〇4-1〇6個癌細胞注入雄性SCID小鼠右側腹來產 生皮下(s.c·)腫瘤。為測試抗體對腫瘤形成之功效,亦即, 在腫瘤細胞注射當日開始注射抗體。作為對照,將經純化 之小鼠IgG(ICN)或PBS注入小鼠,或將識別不表現於人類 細胞中之無關抗原的純化MAb注入小鼠。在初步研究中, 對於腫瘤生長,未發現小鼠IgG或PBS之間的差異。腫瘤 142769.doc -202- 201021828 尺寸藉由測徑規量測法測定,且腫瘤體積以長度x寬度x高 度计算。將皮下Μ瘤直徑大於1.5 cm之小鼠處死β 為進行脛骨内注射,用適量之氣胺酮/甲苯噻嗪/乙醢丙 °秦混合物(Ketamine/Xylazine/Acepromazine cocktail)麻醉 小鼠°在所預備之左膝區域中切開5 mm切口以曝露脛骨 腱。穿過骨之近端且沿著尾部方向將271/2型針插入脛骨 内。使用漢密爾頓注射器(Hamilton syringe)將10 μΐ預製細 胞懸浮液注入271/2型針所形成之空間内。使用6_〇號絲質 縫合線縫合切口。使用測徑規監測腫瘤生長。實驗結束 時,處死動物且經由電子天平對左脛骨及右脛骨稱重。藉 由將具有腫瘤之右脛骨之重量減去無腫瘤之對側脛骨之重 量來測定腫瘤重量。 卵巢腫瘤通常發生轉移並生長於腹膜腔内。因此,藉由 將兩百萬細胞直接注入雌性小鼠之腹膜内來執行小鼠腹膜 内卵巢腫瘤之生長。監測小鼠之一般健康狀況、身體活動 Φ 及外觀,直至其變成垂死狀態.。處死時,可檢查腹膜腔以 測定腫瘤負荷且收穫肺以評估是否轉移至遠側部位。或 者,可使用死亡作為終點。接著將小鼠隔離分組以用於適 當治療’其中58P1D12或對照MAb以腹膜内(i.p.)方式注 射。 異種移植癌症模型之優點在於能夠研究新血管形成及血 管生成。腔瘤生長部分地依賴於新血管形成。雖然毛細血 管糸統及所出現之jk液網路源於宿主,.但新脈管系統之開 始及構造由異種移植腫瘤調控(David〇ff等人,Clin Cancer I42769.doc -203- 201021828Example 15 58P1D12 tumor growth-promoting live beta internal assay The effect of 58P1D12 protein on tumor cell growth was assessed in vivo by assessing tumor formation and growth of 58P1D12 or 58P1D12-deficient cells. For example, a 3Τ3 or ovarian cancer cell line containing tkNeo empty vector or 58P1D12 was subcutaneously injected into each flank of SCID mice. At least two strategies can be used: (1) constitutively expressing 58P1D12 under promoter regulation, such as a self-virus (such as polyomavirus, fowlpox virus (UK 2, 211, 504 published July 5, 1989), a constitutive promoter obtained from the genome of adenovirus (such as adenovirus 2), bovine papilloma, avian sarcoma virus, giant cell virus, retrovirus, hepatitis B virus and monkey virus 4 (SV40), Or a heterologous mammalian promoter such as an actin promoter or an immunoglobulin promoter, the restriction being that the promoter is compatible with the host cell system; and (2) regulating expression under the control of an inducible vector system, Such as ecdysone, tetracycline and the like, the restriction is that the promoters are compatible with the host cell system. The tumor volume is then monitored by caliper measurement when the palpable tumor is present and tracked over time to determine whether the 58P1D12 expressing cells grow at a faster rate and whether the tumor produced by the 58P1D12 expressing cells exhibits invasive changes. (eg increased metastasis, angiogenesis, reduced reactivity to chemotherapeutic drugs, j,). In addition, the same cells can be orthotopically implanted into mice to determine whether 58p丨D 〖2 has an effect on local growth in the peritoneum and whether 58P1D12 affects cell turnover. 142769.doc -201· 201021828 The ability to move (Miki T et al. , Oncol Res. 2001; 12:209; Fu X et al, Int J Cancer. 1991, 49: 938). The effect of 58P1D12 on tumor formation and growth was assessed by intra-articular injection of ovarian or prostate tumor cells. This assay can also be used to determine 58P1D12 inhibition of candidate therapeutic compositions such as 58P1D12 intrabody, 58P1D12 antisense and ribozyme. Example 16 58P1D12 Single Plant Against Inhibition of Intratumoral Tumor Growth The remarkable expression of 58P1D12 on the cell surface of tumor tissues and its restricted expression in normal tissues made 58P1D12 an excellent target for antibody therapy. Similarly, 58P1D12 is a target for T cell-based immunotherapy. Therefore, the therapeutic efficacy of 58P1D12 MAb in a human ovarian cancer xenograft mouse model and a human prostate cancer xenograft mouse model was evaluated. The effects of antibodies on tumor growth and metastasis formation were studied in a mouse cancer xenograft model (eg, subcutaneous, intra-tibial, and intraperitoneal). The antibody can be unconjugated as described in this example, or can be combined with a therapeutic form as understood in the art. Subcutaneous (s.c.) tumors were generated by injecting 5 χ l〇 4-1 〇 6 cancer cells mixed with Matrigel (Collaborative Research) at a 1:1 dilution into the right abdomen of male SCID mice. To test the effect of antibodies on tumor formation, that is, to start injecting antibodies on the day of tumor cell injection. As a control, purified mouse IgG (ICN) or PBS was injected into the mouse, or purified MAb recognizing an unrelated antigen not expressed in human cells was injected into the mouse. In the preliminary study, no difference was found between mouse IgG or PBS for tumor growth. Tumors 142769.doc -202- 201021828 Dimensions were determined by caliper gauge and tumor volume was calculated as length x width x height. Mice with subcutaneous tumors larger than 1.5 cm in diameter were sacrificed for intra-articular injection, and mice were anesthetized with an appropriate amount of ketamine/xylazine/Acepromazine cocktail. A 5 mm incision was made in the prepared left knee area to expose the humerus. The 271/2-type needle is inserted into the tibia through the proximal end of the bone and along the tail. A 10 μΐ pre-formed cell suspension was injected into the space formed by the 271/2-type needle using a Hamilton syringe. The incision was sutured using a 6_ 丝 silk suture. Tumor growth was monitored using a caliper gauge. At the end of the experiment, the animals were sacrificed and the left tibia and right tibia were weighed via an electronic balance. Tumor weight was determined by subtracting the weight of the right tibia with the tumor from the weight of the contralateral tibia without the tumor. Ovarian tumors usually metastasize and grow in the peritoneal cavity. Therefore, the growth of mouse intraperitoneal ovarian tumors was performed by directly injecting two million cells into the peritoneum of female mice. Monitor the general health, physical activity Φ and appearance of the mouse until it becomes dying. At the time of sacrifice, the peritoneal cavity can be examined to determine tumor burden and the lungs harvested to assess whether to metastasize to the distal site. Alternatively, death can be used as the end point. The mice were then isolated for grouping for proper treatment' wherein 58P1D12 or control MAb was injected intraperitoneally (i.p.). The advantage of the xenograft cancer model is the ability to study new blood vessel formation and angiogenesis. Tumor growth depends in part on neovascularization. Although capillary vasculature and the resulting jk fluid network originate from the host, the initiation and construction of the new vasculature is regulated by xenograft tumors (David〇ff et al., Clin Cancer I42769.doc -203- 201021828).
Res. (2001) 7:2870 ; Solesvik 等人,Eur J Cancer Clin Oncol. (1984) 20:1295)。根據此項技術中已知的程序(諸如 腫瘤組織及其周圍微環境之IHC分析)研究抗體及小分子對 新血管形成之影響。 58P1D12 MAb抑制卵巢癌與前列腺癌異種移植物之形 成。58P1D12 MAb亦使已建立之正位腫瘤之生長延缓並延 長具有腫瘤之小鼠之存活期。該等結果表明58P1D12 MAb 可用於治療局部及晚期的卵巢癌及前列腺癌及表I中所列 之彼等癌症。 58P1D12單株抗踵: 如標題為「產生58P1D12單株抗體(MAb)」之實例中所 述,產生針對58P1D12之單株抗體。藉由ELISA、西方墨 點法、FACS及免疫沈澱法,針對MAb結合58P1D12的能力 對MAb進行表徵。如藉由ELIS A及西方分析法所測定的針 對58P1D12 MAb之抗原決定基定位資料識別58P1D12蛋白 質上之抗原決定基。 藉由蛋白質-G或蛋白質-A瓊脂糖層析法自腹水或融合瘤 組織培養物上清液純化MAb,相對於PBS透析,過濾滅菌 且在-20°(:下儲存。藉由£1^18八或00 28〇11^1執行蛋白質測 定。製備治療性MAb或包含個別MAb之混合物的混合液且 用於治療接受 3T3-58P1D12、OVCAR5-58P1D12 或LAPC9-AI腫瘤異種移植物之皮下、腹膜内或脛骨内注射的小鼠。 細胞株及異種移植物: 將3T3-58P1D12及OVCAR5-5 8P1D12細胞分別維持於補 142769.doc -204- 201021828 充有L-麩胺醯胺及10%FBS之DMEM及RPMI中。 用皮下套針植入物使LAPC9-AI及LAPC9-AD腫瘤異種移 植物於6週至8週齡雄性ICR嚴重複合型免疫缺乏(SCID)小 鼠(Taconic Farms)中繼代(Craft, N.等人,Nat Med. 1999, 5:280)。如 Craft 等人中所述,製備 LAPC9-AI 或 LAPC9-AD 腫瘤細胞之單一細胞懸浮液。亦使用其他細胞株。 58P1D12 MAb抑制表現58P1D12之異種移植腫瘤之生長 使用 3T3-5 8P1D12、OVCAR5-58P1D12及 LAPC9-AI 腫瘤 ® 模型測試58P1D12 MAb對腫瘤形成之影響。與皮下腫瘤模 型相比,腹膜内及脛骨内模型引起局部腫瘤生長、遠侧部 位出現轉移、小鼠健康狀況惡化及隨後死亡。該等特徵使 得腹膜内及脛骨内模型更能代表人類疾病發展且容許吾人 跟蹤58P1D12 MAb對臨床相關終點的治療作用。 經4週時期將58P1D12 MAb或對照抗體注射物投與具有 已建立之腹膜内及脛骨内模型腫瘤的小鼠。容許此兩組小 鼠建立高腫瘤負荷,以確保轉移形成於小鼠肺中的高發生 ❹ 率。接著殺死小鼠且藉由IHC分析法分析其肝、骨及肺中 是否存在腫瘤細胞。58P1D12抗體抑制腫瘤之腫瘤形成且 延緩已建立之腫瘤之生長且延長所治療之小鼠之存活期。 因此,就主要臨床相關終點(腫瘤生長)、存活期延長及健 康狀況而言,5 8P1D12 MAb為有效的。 58P1D12 MAb Ha8-4c4.1 對 SCID小鼠中之 3T3-58P1D12 膣瘤異種移植物之生長的影響 在本實驗中,將3T3-58P1D12細胞(5.〇xl〇6個細胞)嵌埋 142769.doc -205 - 201021828 於Matngel中且在第〇日植入雄性SCID小鼠之右侧腹中。 同一曰將小鼠隨機分組(每組n=10隻)且使用500 Ha8_ 4c4.1或同種型對照MAb(每週兩次,總共8劑)以腹骐内方 式開始治療。每隔3至4天使用測徑規量測法監測腫瘤生 長。 結果證明,第27日,與對照抗體單獨治療相比,Ha8_ 4c4.1將SCID小鼠中生長之3T3_58p1D12腫瘤異種移植物的 生長抑制約78%。使用Mann-Whitney U檢驗分析時,對照 腫瘤與經Ha8-4c4.1治療之腫瘤之間腫瘤體積的所得差異 具有統計顯著性(ρ<〇·〇〇〇1)。(圖11)。 在另一實驗中,將3T3-5SP1D12細胞(5.0χ104個細月包)嵌 埋於Matrigel中且在第〇日手術植入雄性SCID小鼠之右脛 骨中。使腫瘤建立7天,此時將小鼠隨機分組(每組n=10 隻)。使用I.5 mg負荷劑量之HA8-4c4.1或同種型對照 MAb、接著使用750 pg之各相應Mab(每週投與兩次,總共 6劑)以腹膜内方式開始治療。每隔3至4天使用測徑見量測 法監測腫瘤生長。 結果證明,第24日,與使用對照抗體治療之治療相比, Ha8-4c4.1將小鼠脛骨中生長之已建立3T3-58P1D12肢瘤異 種移植物之生長抑制約63%(<0.01,使用Mann-Whitn_ey U 檢驗)。(圖12)。 58P1D12 MAb Ha8-4c4.1對 SCID小鼠中之LAPC9-AD腫 瘤異種移植物之生長的影響 在本實驗中,將LAPC9-AD腫瘤之儲備液酶促消也,計 142769.doc -206- 201021828 數且在第〇日將一百五十萬個活細胞皮下植入雄性SCID小 鼠之右脛骨中。同一曰將小鼠隨機分組(每組^⑺隻)且使 用500叹Ha8-4c4.1或同種型對照人類IgG1以腹膜内方式 開始治療。每週兩次治療動物,總共1〇劑,直至第32曰。 研究結束時,處死動物且經由電子天平對左脛骨及右脛骨 稱重。藉由將具有腫瘤之右脛骨之重量減去無腫瘤之對側 脛骨之重量來測定腫瘤重量,將此腫瘤重量繪成曲線圖。 結果證明,第32日,與對照抗體治療相比,Ha8-4c4.1 將小鼠脛骨t生長之LAPC9-AD前列腺癌異種移植物之生 長抑制60%。使用學生t檢驗分析時,對照腫瘤重量與Η&8_ 4c4.1腫瘤重量之間的所得差異具有統計顯著性 (p=0.0057)。(圖 13)。 58P1D12 MAb Ha8_4c4.l對小鼠中已建立之印巢腫瘸之 生長的影響 在本實驗中,將表現〇vcar5-58PlD12之腫瘤細胞 φ (2.〇xl〇6個細胞)植入雌性SCID小鼠之右脛骨内。次日,將 小鼠隨機分組(每組n=10隻)且使用500 HaSjM]或同種 型對,¾人類IgGl以腹膜内(i.p.)方式開始治療。每週兩次治 療動物,總共12劑,直至第42曰。研究結束時(第42曰), 處死動物且經由電子天平對右脛骨及左脛骨稱重。腫瘤重 量為減去無腫瘤之對側脛骨之重量之後所獲得的量測值, 將腫瘤重量繪成曲線圖。 結果證明’與對照抗體治療相比,Ha8-4c4.1可以單一 藥劑形式對Ovcar5-58PlD12腫瘤有效,使得生長被抑制 I42769.doc • 207- 201021828 56% (p=0.0002,使用 Mann-Whitney U檢驗)。(圖 14)。 在另一實驗中,在第0日將〇vcar5-58PlD12腫瘤細胞 (2·〇χ1 06個細胞)注入雌性SCID小鼠之腹膜内。當腫瘤充分 建立後第7曰,將小鼠隨機分組(每組n=i5隻)且使用500 Ha8-4c4.1或同種型對照人類igGl以腹膜内方式開始治 療。每週兩次用抗體治療動物,只要其存活。研究期間在 數曰内監測並記錄小鼠之健康及存活狀況。 結果證明’經HA8-4c4.1治療的具有充分建立之卵巢腫 瘤之小鼠存活69天之中位值,且經對照MAb治療值小鼠存 活37天之中位值。經HA8-4c4.1治療之小鼠之存活天數中 位值增加32天具有統s十顯者性(p=〇.〇〇66,使用Logrank檢 驗)。(圖 15)。 5SP1D12 MAb Ha8-4c4.l與卡鉑之组合治療對小鼠中之 人類前列腺癌異種移植物之生長的影響 在本實驗中’評估作為單一療法及與化學治療劑卡鉑組 合形式之Ha8-4c4.1在已建立之不依賴雄激素之前列腺腫 瘤異種移植物(LAPC9-AI)中的能力。將LAPC9-AI腫瘤之 儲備液酶促消化,計數且在第〇日將1·5xl06個細胞手術植 入雄性SCID小鼠之右脛骨中。容許腫瘤建立7天,此時將 動物隨機分成四個不同組(每組n==l 〇隻)。第7曰開始,腹 膜内投與負荷劑量(2 mg)之Ha8-4c4.1 MAb或同種型對照 人類IgGl,接著投與維持劑量(ι·〇 mg)之相應MAb,一週 兩次,總共7劑。在第7、11、15、19、22及26日將卡銘 (40 mg/kg)靜脈内(i.v.)投與小鼠。第33曰,將全部小鼠處 142769.doc -208- 201021828 死,且將腫瘤切除且用電子天平稱重。 結果證明,Ha8-4c4_ 1在單一藥劑形式下非常有效,且 與對照抗體治療相比,抑制腫瘤生長達76% (p=〇 〇〇77)。 卡鉑單一療法亦抑制腫瘤生長,導致腫瘤生長被抑制87% (p=0.0001)。Ha8-4c4.1與卡鉑組合治療可增強抑制作用且 與單獨對照抗體相比導致腫瘤生長被抑制97% (p<0.0001)。當將Ha8-4c4.1加卡鉑治療組之腫瘤重量與對 照MAb加卡鉑治療組之腫瘤重量比較時,亦證明統計顯著 ® 性差異(P=0.0243)。初始使用Kruskal-Wallis檢驗執行統計 分析以測定各組當中的顯著性。接著,對各對比較應用學 生t檢驗或Mann-Whitney U檢驗。(圖16)。 該等實驗之結果證明,58P1D12 MAb可用於治療及診斷 目的以治療並控制表I中所列之癌症。 實例16 58P1D12抗醴在人類中之治療性及診斷性用途 ⑩ 58P1D12 MAb可安全且有效地用於人類之診斷、預防、 預後及/或治療目的,較佳用於治療表I中所列之癌症。具 有58P1D12 MAb之癌症組織及癌症異種移植物的西方墨點 法及免疫組織化學分析證明,在癌瘤中染色濃、範圍廣, 但在正常組織中的染色量明顯較低或無法偵測到。在癌瘤 及轉移性疾病中偵測到58P1D12證明MAb可用作诊斷性及/ 或預後性指標。5 8P1D12抗體因此用於診斷性應用,諸如 對卵巢活檢樣本進行免疫組織化學分析以偵測疑似患者之 癌症。 142769.doc -209- 201021828 如藉由流式細胞術所測定,58P1D12 MAb择異性結合癌 瘤細胞。因此,58P1D12 MAb用於診斷性全身成像應用, 諸如放射免疫閃爍攝影術及放射免疫療务(參見例如Res. (2001) 7:2870; Solesvik et al., Eur J Cancer Clin Oncol. (1984) 20:1295). The effects of antibodies and small molecules on neovascularization are studied according to procedures known in the art, such as IHC analysis of tumor tissue and its surrounding microenvironment. 58P1D12 MAb inhibits the formation of ovarian and prostate cancer xenografts. The 58P1D12 MAb also delays the growth of established orthotopic tumors and prolongs the survival of tumor-bearing mice. These results indicate that 58P1D12 MAb can be used to treat local and advanced ovarian and prostate cancers and their cancers listed in Table I. 58P1D12 monoclonal antibody: A monoclonal antibody against 58P1D12 was generated as described in the example entitled "Production of 58P1D12 monoclonal antibody (MAb)". MAbs were characterized by the ability of MAb to bind 58P1D12 by ELISA, Western blot, FACS and immunoprecipitation. The epitope on the 58P1D12 protein is recognized by epitope mapping data for 58P1D12 MAb as determined by ELIS A and Western analysis. MAb was purified from ascites or fusion tumor tissue culture supernatant by protein-G or protein-A agarose chromatography, dialyzed against PBS, filter sterilized and stored at -20° (by: £1^) Perform protein assays on 18 or 00 28〇11^1. Prepare a mixture of therapeutic MAbs or mixtures containing individual MAbs and treat subcutaneous and peritoneal membranes that receive 3T3-58P1D12, OVCAR5-58P1D12 or LAPC9-AI tumor xenografts. Intra- or intra-tibia injections of cells. Cell lines and xenografts: 3T3-58P1D12 and OVCAR5-5 8P1D12 cells were maintained at 142769.doc -204- 201021828, supplemented with L-glutamine and 10% FBS In DMEM and RPMI, LAPC9-AI and LAPC9-AD tumor xenografts were relayed to male ICR severe complex immunodeficiency (SCID) mice (Taconic Farms) from 6 weeks to 8 weeks with a subcutaneous needle implant ( Craft, N. et al., Nat Med. 1999, 5: 280). Preparation of a single cell suspension of LAPC9-AI or LAPC9-AD tumor cells as described in Craft et al. Other cell lines were also used. 58P1D12 MAb inhibition Growth of xenograft tumors showing 58P1D12 using 3T3-5 8P1D12, OV The CAR5-58P1D12 and LAPC9-AI Tumor® models tested the effect of 58P1D12 MAb on tumor formation. Compared with the subcutaneous tumor model, the intraperitoneal and intra-tibial models caused local tumor growth, metastasis in the distal site, deterioration of the patient's health and subsequent Death. These features make the intraperitoneal and intra-humeral models more representative of human disease progression and allow us to track the therapeutic effects of 58P1D12 MAb on clinically relevant endpoints. The 58P1D12 MAb or control antibody injections were administered over a 4-week period with established Mice bearing tumors in the intraperitoneal and tibia. The mice in the two groups were allowed to establish a high tumor burden to ensure a high rate of metastasis in the lungs of the mice. The mice were then sacrificed and analyzed by IHC analysis. Whether there are tumor cells in the liver, bone and lung. 58P1D12 antibody inhibits tumor formation and delays the growth of established tumors and prolongs the survival of the treated mice. Therefore, the main clinically relevant endpoint (tumor growth), survival The 5 8P1D12 MAb is effective in terms of prolongation and health. 58P1D12 MAb Ha8-4c4.1 3T3 in SCID mice -58P1D12 Effect of growth of tumor xenografts In this experiment, 3T3-58P1D12 cells (5.〇xl〇6 cells) were embedded in 142769.doc -205 - 201021828 in Matngel and implanted on the third day In the right abdomen of male SCID mice. Mice were randomized into the same sputum (n=10 per group) and treatment was started intraperitoneally using 500 Ha8_4c4.1 or isotype control MAb (twice a week for a total of 8 doses). Tumor growth was monitored using a caliper gauge every 3 to 4 days. As a result, on the 27th day, Ha8_cc4.1 inhibited the growth of the 3T3_58p1D12 tumor xenograft grown in SCID mice by about 78% as compared with the control antibody alone. The difference in tumor volume between control tumors and Ha8-4c4.1 treated tumors was statistically significant (ρ<〇·〇〇〇1) when analyzed using the Mann-Whitney U test. (Figure 11). In another experiment, 3T3-5SP1D12 cells (5.0χ104 fine moon packs) were embedded in Matrigel and surgically implanted into the right tibia of male SCID mice on the third day. Tumors were established for 7 days at which time mice were randomized (n=10 per group). Treatment was initiated intraperitoneally using an I.5 mg loading dose of HA8-4c4.1 or an isotype control MAb followed by 750 pg of each corresponding Mab (twice per week for a total of 6 doses). Tumor growth was monitored using a caliper measurement every 3 to 4 days. The results demonstrated that on day 24, Ha8-4c4.1 inhibited the growth of established 3T3-58P1D12 limb tumor xenografts grown in mouse tibia by approximately 63% (<0.01, compared to treatment with control antibody treatment). Use the Mann-Whitn_ey U test). (Figure 12). Effect of 58P1D12 MAb Ha8-4c4.1 on the growth of LAPC9-AD tumor xenografts in SCID mice In this experiment, the stock solution of LAPC9-AD tumors was enzymatically eliminated, 142769.doc -206- 201021828 On the third day, 1.5 million live cells were subcutaneously implanted into the right tibia of male SCID mice. Mice were randomized into groups at the same time (^ (7) per group) and treatment was initiated intraperitoneally with 500 sighs of Ha8-4c4.1 or isotype control human IgG1. Animals were treated twice a week for a total of 1 dose until the 32nd. At the end of the study, the animals were sacrificed and the left tibia and right tibia were weighed via an electronic balance. Tumor weight was determined by subtracting the weight of the tumor-free right tibia from the weight of the contralateral tibia without tumor. As a result, on the 32nd day, Ha8-4c4.1 inhibited the growth of the mouse tibia t-grown LAPC9-AD prostate cancer xenograft by 60% as compared with the control antibody treatment. The difference between the control tumor weight and the tumor weight of Η&8_4c4.1 was statistically significant (p=0.0057) when using Student's t-test analysis. (Figure 13). Effect of 58P1D12 MAb Ha8_4c4.l on the growth of established nested tumors in mice In this experiment, tumor cells φ (2.〇xl〇6 cells) expressing 〇vcar5-58PlD12 were implanted into female SCIDs. Inside the right tibia of the mouse. On the next day, mice were randomized (n=10 per group) and 500 HaSjM] or isotype pairs were used, and 3⁄4 human IgGl was started intraperitoneally (i.p.). Animals were treated twice a week for a total of 12 doses until 42nd. At the end of the study (p. 42), the animals were sacrificed and the right tibia and left tibia were weighed via an electronic balance. The tumor weight is the measurement obtained after subtracting the weight of the contralateral tibia without tumor, and the tumor weight is plotted as a graph. The results demonstrate that Ha8-4c4.1 can be effective against Ovcar5-58PlD12 tumors in a single agent form compared to control antibody treatment, allowing growth to be inhibited by I42769.doc • 207- 201021828 56% (p=0.0002, using Mann-Whitney U test) ). (Figure 14). In another experiment, 〇vcar5-58PlD12 tumor cells (2·〇χ1 06 cells) were injected into the peritoneum of female SCID mice on day 0. When the tumor was fully established, the mice were randomized (n=i5 per group) and treated with the intraperitoneal approach using 500 Ha8-4c4.1 or the isotype control human igGl. Animals are treated with antibodies twice a week as long as they survive. The health and survival of the mice were monitored and recorded in the number of weeks during the study. The results demonstrated that mice with well established ovarian tumors treated with HA8-4c4.1 survived a median of 69 days and that the control MAb treated mice survived a median of 37 days. The median survival days of mice treated with HA8-4c4.1 increased by 32 days with a sigmoid (p=〇.〇〇66, using the Logrank test). (Figure 15). Effect of combination of 5SP1D12 MAb Ha8-4c4.l and carboplatin on the growth of human prostate cancer xenografts in mice In this experiment, 'Assessed as a monotherapy and a combination with the chemotherapeutic carboplatin Ha8-4c4 .1 The ability to establish an androgen-independent prostate tumor xenograft (LAPC9-AI). The LAPC9-AI tumor stock solution was enzymatically digested, counted, and 1. 5 x 106 cells were surgically implanted into the right tibia of male SCID mice on the following day. The tumor was allowed to establish for 7 days, at which time the animals were randomly divided into four different groups (n==l each). Beginning with stage 7, intraperitoneal administration of a loading dose (2 mg) of Ha8-4c4.1 MAb or an isotype control human IgGl followed by a maintenance dose (ι·〇mg) of the corresponding MAb twice a week for a total of 7 Agent. Carmine (40 mg/kg) was administered intravenously (i.v.) to mice on days 7, 11, 15, 19, 22 and 26. On page 33, all mice were sacrificed at 142769.doc -208-201021828 and the tumor was excised and weighed with an electronic balance. The results demonstrate that Ha8-4c4_1 is very effective in a single agent form and inhibits tumor growth by 76% compared to control antibody treatment (p=〇77). Carboplatin monotherapy also inhibited tumor growth, resulting in a 87% inhibition of tumor growth (p=0.0001). Combination therapy with Ha8-4c4.1 and carboplatin enhanced inhibition and resulted in 97% inhibition of tumor growth compared to control antibody alone (p<0.0001). Statistically significant ® differences were also demonstrated when comparing the tumor weight of the Ha8-4c4.1 plus carboplatin treatment group to the tumor weight of the control MAb plus carboplatin treatment group (P = 0.0243). Statistical analysis was performed initially using the Kruskal-Wallis test to determine significance in each group. Next, a student t test or a Mann-Whitney U test was applied to each pair. (Figure 16). The results of these experiments demonstrate that 58P1D12 MAb can be used for therapeutic and diagnostic purposes to treat and control the cancers listed in Table I. Example 16 Therapeutic and diagnostic use of 58P1D12 anti-caries in humans 10 58P1D12 MAb can be safely and effectively used for diagnostic, prophylactic, prognostic and/or therapeutic purposes in humans, preferably for the treatment of the cancers listed in Table I . Western blotting and immunohistochemical analysis of cancer tissues and cancer xenografts with 58P1D12 MAb demonstrated that the staining was extensive and broad in cancer, but the amount of staining in normal tissues was significantly lower or undetectable. Detection of 58P1D12 in cancer and metastatic disease demonstrates that MAb can be used as a diagnostic and/or prognostic indicator. 5 8P1D12 antibodies are therefore used in diagnostic applications, such as immunohistochemical analysis of ovarian biopsy samples to detect cancer in suspected patients. 142769.doc -209- 201021828 58P1D12 MAb is heterozygously bound to cancerous cells as determined by flow cytometry. Therefore, 58P1D12 MAb is used in diagnostic whole body imaging applications such as radioimmuno scintigraphy and radioimmunotherapy (see for example
Potamianos S.等人,Anticancer Res 2〇 (2乂): 925-948 (2000)),以便偵測呈現58P1D12表現之局部及轉移性癌 症。58P1D12之胞外域排入或釋入胞外環境内(諸如對於鹼 性麟酸二酯酶B10 所見(Meerson, N. R·,Hepatology 27: 563-568 (1998)))容許用58P1D12 MAb診斷性後測疑似患者 之血清及/或尿樣本中之58P1D12。 特異性結合58P1D12的58P1D12 MAb用於治療性應用中 以便治療表現58P1D12之癌症。58P1D12 MAb以未接合形 式且以接合形式(其甲抗體與此項技術中熟知之多種治療 或成像形式(諸如前藥、細胞毒性劑、酶或放谢性同位素) 中之一種連接)使用。在臨床前研究中,測試未接合 58P1D12 MAb及接合58P1D12 MAb在SCID+鼠癌症異種 移植模型中預防腫瘤及抑制生長的功效。(參見例如標題 為「5 8P1D12單株抗體抑制活體内腔瘤生長」的實例)。將 接合58P1D12 MAb及未接合58P1D12 MAb作烏一種治療形 式單獨或與如以下實例中所述之其他治療組令用於人類臨 床試驗中。 實例17 經由使用S8P1D12 MAb來治療及診斷人類癌瘤的人類路 床試驗 根據本發明使用之58P1D12 MAb可用於治療某些疆瘤, 142769.doc -210- 201021828 諸如表i中所列之彼等腫瘤。基於諸多因素(包括58piDi2 表現量),腫瘤(諸如表I中所列之彼等腫瘤)為目前較佳之 適應症。就該等適應症中之每一種而言,已成功採用三種 臨床方法。 I.)組合療法:在組合療法中,用58P1D12 MAb與化學 治療劑或抗贅生藥劑及/或放射療法組合治療患者。藉由 向軚準一線及二線療法中添加58P1D12 MAb依據標準方案 治療原發性癌症標靶,諸如表I中所列之彼等癌症,如依 據腫瘤質量減小及能夠減少標準化學療法之常用劑量所評 估,方案设計專注於有效性。該等劑量減小因為使化學治 療劑之劑量相關毒性減小而容許其他及/或延長療法。在 若干輔助臨床試驗中,將58P1D12 MAb與化學治療劑及此 項技術中已知之其他療法組合使用。 在一實施例中,當用58P1D12抗體聯合化學治療劑或放 射或其組合一起治療腫瘤(包括人類腫瘤)時,存在協同作 ❹ 用。換而言之,當與化學治療劑或放射或其組合組合時, 58P1D12抗體對腫瘤生長之抑制增強超過預期。協同作用 可呈現為’例如,與僅5 8P1D12抗體之治療預期相比或與 用58P1D12抗體及化學治療劑或放射治療之疊加效應相 比’組合治療對腫瘤生長的抑制更大。協同作用較佳由癌 症緩解證明,其中預期用裸58P1D12抗體治療或使用 58P1D12抗體與化學治療劑或放射之疊加組合治療不會緩 解。 H·)單一療法:關於在腫瘤之單一療法中使用58P1D12 142769.doc -211 - 201021828 MAb ’可在不存在化學治療劑或抗贅生藥劑的情況下將抗 體投與患者。在一實施例中’臨床上對疾病廣泛轉移的末 期癌症患者執行單一療法。患者展示稍許疾病穩定化。試 驗證明對患有癌變腫瘤之難治性患者的作用。 HI·)接合58P1D12 MAb:為治療諸如卵巢癌之癌症, 可將本發明之58P1D12 MAb與毒素接合,諸如與刺孢黴素 接合(例如 Myl〇targTM, Wyeth-Ayerst, Madison, NJ,一種與 抗腫瘤抗生素刺孢黴素接合的重組人源化IgG4 κ抗體)或與 美登酵接合(例如基於紫杉烷之腫瘤活化前藥ΤΑρ平台,瘳 ImmunoGen,Cambridge,ΜΑ,亦參見例如美國專利 5,4丨6,〇64)或與奥利斯塔汀E接合(Nat Bi〇techn〇l. 2003年7 月 ’ 21(7):778-84. (Seattle Genetics))。 IV·)成像劑:經由將放射性核素(例如碘或釔(Im、 Y9 ))與58P1D12 MAb結合’可將經放射性標記的抗體作為 診斷劑及/或成像劑使用。在此作用中,經標記之抗體定 位於實體腫瘤與表現58P1D12之細胞之轉移性病變處。關 於58P1D12 MAb用作成像劑,該等抗體係用作實體腫瘤手® 術治療之佐劑’用於手術前篩檢與手術後跟蹤以判定何種 腫瘤殘留及/或復發。在一實施例中,(111111)_58?11)12抗體 在患有表現58P1D12之癌瘤之患者的1期人類臨床試驗中用 作成像劑(同樣參見例如Divgi等人乂 #加/. /«W. 83 _·97_ 104 (1991)) ^使用標準前部及後部γ相機跟拍患者。 結果表明鑑別到原發性病變及轉移性病變。 投藥倒量及途径 142769.doc -212· 201021828 如一般技術者所瞭解,給藥考量可經由與臨床令之類似 產品比較來判定。因此,抗58P1D12抗體可在安全性研究 =面以5至400 mg/m4圍内之劑量投與,例如使用較低劑 里抗58P1D12抗體對其標靶之親和性相對於已知抗體對 其“把之親和性為熟習此項技術者用於判定類似劑量方案 的個參數外,與嵌合抗體相比,作為完全人類抗體 的抗58P1D12抗體具有較慢之清除;因此,該等完全人類 抗58P1D12抗體對患者之給藥量較低,也許在5〇至3〇〇 mg/m2範圍内,且仍然有效。與單位為瓜^仏之習知劑量量 度相比’依mg/m2給藥為基於表面積之量度且為經設計以 包括嬰兒至成人之所有體型患者的方便給藥量度。然而, 如熟習此項技術者所瞭解,叫心可為適當的給藥單位。 可使用二種不同的傳遞方法傳遞抗58piDi2抗體。習知 的靜脈内傳遞為-種用於多種腫瘤之標準傳遞技術。然 而,關於腹膜腔内之通瘤,諸如印巢、膽管、其他輸送管 及其類似物之腫瘤,腹膜内投藥經驗證有利於在腫瘤處獲 得高劑量之抗體且亦將抗體清除率降至最小。以類似方 式’某些實體腫瘤具有適於局部灌注的維管結構。局部灌 注容許腫瘤部位處存在高劑量之抗體且將抗體之短期清除 率降至最小。 醢床開發計劃(CDP) 、綜述:CDP結合輔助療法、單一療法且作為成像劑跟縱 並開發抗58P1D12抗體之治療。試驗最初證明安全性且爾 後證明重複劑量之功效。試驗為比較標準化學療法與標準 142769.doc •213· 201021828 療法加抗58P1D12抗體之開放標記。正如所瞭解,可在患 者招募方面使用的一個標準為如藉由活組織檢查所測定之 患者腫瘤中之58P1D12表現量。 如同基於蛋白質或抗體輸注之任何療法一般,安全性考 量主要係關於:⑴細胞因子釋放症候群,亦即低血壓、發 燒、發抖、寒戰;(〗1)對該物質產生免疫原性反應(亦即, 患者針對抗體療法產生人類抗體,或HAHA反應及(出) 使表現58P1D12之正常細胞中毒。使用標準測試及跟訪監 測該等安全性考量中之每_種。發現抗581>1〇12抗體在投 與人類後為安全的。 在本申δ青案整篇中’引用多個網站資料内容、公開案、 專利申凊案及專利。(網站係依據全·球資訊網上定址的其 一致資源定位器(Uniform Resource Locator)或URL 參考)。 該等參考文獻各自之揭示内容以引用方式全部併入本文 中。 本發明之範不欲受本文中所揭示之實施例限制,該等 實施例旨在單獨說明本發明之個別態樣,且任何功能等同 者皆屬於本發明之範疇内。除本文所述外,對本發明之模 型及方法的各種修改根據上述說明及教示將對熟習此項技 術者顯而易見,且同樣意欲屬於本發明之範_内。該等修 改或其他實施例可在不背離本發明之真實範疇及精神的情 況下實施。 實例18 指定寄存編號PTA-9404之融合痼之肽定位及完整分子 142769.doc -214· 201021828 量分析 利用肽定位及胺基末端定序技術及完整分子量分析法對 指定寄存編號PTA-9404之融合瘤所產生的Ha8_4c4.l單株 抗體進行分析。由於觀測到所寄存之融合瘤中存在對應於 Ha8-4c4· 1 VL純系1-B3及純系2-A7的兩個輕鏈序列,因此 此等研究旨在證明寄存物所分泌之該或該等抗體之身分。 由此等實驗所產生之胺基酸序列資料說明,融合瘤僅分 泌單一的對應於Ha8-4c4.1 VL純系1-B3之單株抗體。此 ® 外’分子量分析與純系1-B3之預計分子量之分析一致。 由此等研究所產生之資料得出以下結論:所寄存之融合 瘤僅分泌含有Ha8-4c4.1 VH重鏈及Ha8-4c4.1 VL純系1-B3 輕鏈的抗體。 實例19 重组表現於中國倉鼠卵巢細胞(CHO)中之Ha8-4c4.1 VL 純系1-B3單株抗«的功能分析 將編碼獲自Ha8-4c4.1 VL純系1-B3 (SEQ. ID NO· 19中之 胺基酸殘基1至134)及純系2-A7 (SEQ. ID NO: 18中之胺基 酸殘基1至133)之輕鏈的聚核苷酸與編碼輕鏈κ恆定區之聚 核ASt融合且選殖於表現載體内。將包含兩個輕鏈的表現 載體轉染於中國倉鼠卵巢(CHO)細胞中。兩個鏈均在細胞 内表現輕鍵蛋白質。1 - B 3純系表現具有預計分子量之蛋白 質。相比之下,2-A7純系在細胞内所表現之蛋白質的分子 1展示大於預計分子量。此結果與前導序列之蛋白質滞留 一致0 142769.doc -215- 201021828 用1-B3及2-A7表現載體與恆定及重鏈序列共轉染以容許 組裝重組單株抗體。當與編碼重鏈Ha8-4c4_l VH(包含 SEQ. ID NO: 17中之胺基酸殘基1至146所示之序列)之聚核 苷酸共轉染時,只有含有包含1-B3序列之表現載體的CHO 細胞才分泌完全組裝之單株抗體。2-A7序列不能支持重組 表現單株抗體以及上述分子量資料暗示,2-A7輕鏈未經處 理以移除前導序列。若此假設正確,則保留前导導列的2-A7輕鏈可解釋無法分泌經適當組裝之單株抗體。 測試經純系1-B3及Ha8-4c4.1 VH之序列轉染之CHO細胞 所分泌的重組單株抗體結合至58P1D12蛋白質的能力。重 組抗體展示以與所分泌之單株抗體相同的親和力結合至 5 8P1D12蛋白質。此等結果支持實例18中所述之結果,說 明指定寄存編號PTA-9404之融合瘤所分泌的單株抗體含有 純系1-B3之可變輕鏈。 表格 表I:在惡性時表現58P1D12的組織Potamianos S. et al., Anticancer Res 2〇 (2乂): 925-948 (2000)), in order to detect local and metastatic cancer presenting 58P1D12. The extracellular domain of 58P1D12 is released or released into the extracellular environment (as seen for the basic linonic acid diesterase B10 (Meerson, N. R., Hepatology 27: 563-568 (1998))), allowing diagnosis with 58P1D12 MAb Post-test 58P1D12 in serum and/or urine samples of suspected patients. The 58P1D12 MAb that specifically binds 58P1D12 is used in therapeutic applications to treat cancers that exhibit 58P1D12. The 58P1D12 MAb is used in an unbound form and in a conjugated form (the which is linked to one of a variety of therapeutic or imaging modalities well known in the art, such as prodrugs, cytotoxic agents, enzymes or immunoisotopes). In preclinical studies, the efficacy of unconjugated 58P1D12 MAb and conjugated 58P1D12 MAb in preventing tumors and inhibiting growth in the SCID+ murine cancer xenograft model was tested. (See, for example, the example entitled "5 8P1D12 monoclonal antibody inhibits growth of viable tumors in vivo"). The 58P1D12 MAb and the uncoupled 58P1D12 MAb were treated as a treatment alone or in combination with other treatment groups as described in the Examples below for use in human clinical trials. Example 17 Human Roadbed Test for Treatment and Diagnosis of Human Carcinoma via S8P1D12 MAb 58P1D12 MAb for use in the treatment of certain tumors according to the present invention, 142769.doc-210-201021828 such as those listed in Table i . Tumors (such as those listed in Table I) are currently preferred indications based on a number of factors, including 58 piDi2 performance. Three clinical approaches have been successfully employed for each of these indications. I.) Combination therapy: In combination therapy, a patient is treated with a 58P1D12 MAb in combination with a chemotherapeutic or anti-neoplastic agent and/or radiation therapy. Treatment of primary cancer targets by adding 58P1D12 MAb to first-line and second-line therapy, such as those listed in Table I, such as reduction in tumor mass and reduction in standard chemotherapy The dose is evaluated and the program design focuses on effectiveness. Such dose reductions allow for other and/or prolonged therapies because of the reduced dose-related toxicity of the chemotherapeutic agent. In several assisted clinical trials, 58P1D12 MAb is used in combination with chemotherapeutic agents and other therapies known in the art. In one embodiment, there is a synergistic effect when treating a tumor (including a human tumor) with a 58P1D12 antibody in combination with a chemotherapeutic agent or radiation or a combination thereof. In other words, the inhibition of tumor growth by the 58P1D12 antibody increased more than expected when combined with a chemotherapeutic agent or radiation or a combination thereof. Synergism can be presented as 'e"''''''''''''''''''''' Synergism is preferably evidenced by cancer remission, where treatment with either the naked 58P1D12 antibody or the combination of the 58P1D12 antibody and the chemotherapeutic agent or radiation is not expected to be resolved. H.) Monotherapy: For the use of 58P1D12 in a monotherapy of tumors 142769.doc -211 - 201021828 MAb ' can be administered to a patient in the absence of a chemotherapeutic or anti-neoplastic agent. In one embodiment, a monotherapy is performed clinically on a terminal cancer patient with extensive disease metastasis. The patient showed a slight stabilization of the disease. Test the effect of refractory patients with cancerous tumors. HI·) Engagement 58P1D12 MAb: For the treatment of cancers such as ovarian cancer, the 58P1D12 MAb of the present invention can be conjugated to a toxin, such as with a calicheamicin (eg, Myl〇targTM, Wyeth-Ayerst, Madison, NJ, a antagonist Tumor antibiotic echinomycin-conjugated recombinant humanized IgG4 κ antibody) or conjugated with melamine (eg, a taxane-based tumor-activated prodrug 平台ρ platform, 瘳ImmunoGen, Cambridge, ΜΑ, see also, for example, US Patent 5, 4丨6,〇64) or with Ollistatin E (Nat Bi〇techn〇l. July 2003 '21(7): 778-84. (Seattle Genetics)). IV·) Imaging agent: A radiolabeled antibody can be used as a diagnostic and/or imaging agent by binding a radionuclide (e.g., iodine or hydrazine (Im, Y9)) to a 58P1D12 MAb. In this effect, the labeled antibody is localized to a metastatic lesion of a solid tumor and a cell exhibiting 58P1D12. For the 58P1D12 MAb used as an imaging agent, these anti-systems are used as adjuvants for solid tumor hand treatments' for pre-operative screening and post-operative tracking to determine which tumor residuals and/or recurrences. In one embodiment, the (111111)_58?11)12 antibody is used as an imaging agent in a phase 1 human clinical trial in a patient with a cancer of 58P1D12 (see also, for example, Divgi et al. #加/. /« W. 83 _·97_ 104 (1991)) ^Fat patients with standard anterior and posterior gamma cameras. The results showed that primary lesions and metastatic lesions were identified. Dosing and Routes of Administration 142769.doc -212· 201021828 As will be appreciated by those of ordinary skill, dosing considerations can be determined by comparison with similar products of clinical orders. Therefore, an anti-58P1D12 antibody can be administered at a dose ranging from 5 to 400 mg/m4 in a safety study, for example, using an anti-58P1D12 antibody in a lower agent for its target affinity relative to a known antibody. In addition to the parameters used by the skilled artisan to determine similar dosage regimens, anti-58P1D12 antibodies as fully human antibodies have a slower clearance compared to chimeric antibodies; therefore, such fully human anti-58P1D12 The amount of antibody administered to the patient is low, perhaps in the range of 5 〇 to 3 〇〇 mg/m 2 , and is still effective. Compared with the conventional dose measurement in units of 瓜 仏 ' The measure of surface area is a convenient measure of administration for all body types of patients designed to include infants to adults. However, as will be appreciated by those skilled in the art, the desired dosage unit can be used. Two different routes can be used. The method delivers anti-58piDi2 antibody. Conventional intravenous delivery is a standard delivery technique for a variety of tumors. However, for peritoneal tumors, tumors such as nests, bile ducts, other ducts, and the like Intraperitoneal administration has been shown to be beneficial in obtaining high doses of antibodies at the tumor and also minimizing antibody clearance. In a similar manner 'some solid tumors have vascular structures suitable for local perfusion. Local perfusion allows for high presence at tumor sites Dosage of antibodies and minimize short-term clearance of antibodies. Trampoline Development Program (CDP), review: CDP combined with adjuvant therapy, monotherapy, and imaging as an imaging agent to develop anti-58P1D12 antibodies. The trial initially demonstrated safety. And then demonstrate the efficacy of repeated doses. The trial is to compare the standard chemotherapy with the standard 142769.doc • 213· 201021828 Therapy plus the open label of the anti-58P1D12 antibody. As you know, one standard that can be used in patient recruitment is by living Tissue examination of the amount of 58P1D12 expression in the patient's tumor as determined. As with any therapy based on protein or antibody infusion, safety considerations are primarily concerned with: (1) cytokine release syndrome, ie hypotension, fever, trembling, chills; 1) an immunogenic response to the substance (ie, the patient is resistant to Body therapy produces human antibodies, or HAHA reactions and (out) poisoning of normal cells that exhibit 58P1D12. Standard tests and follow-ups are used to monitor each of these safety considerations. Anti-581 >1〇12 antibodies were found to be administered It is safe for human beings. In the whole article of this application, it cites multiple website materials, publications, patent applications and patents. (The website is based on the consistent resource locator of the website. (Uniform Resource Locator) or the URL reference. The disclosure of each of the references is hereby incorporated by reference in its entirety in its entirety herein in The individual aspects of the invention are described, and any functional equivalents are within the scope of the invention. Various modifications of the present invention will be apparent to those skilled in the art in the <RTIgt; Such modifications or other embodiments may be practiced without departing from the true scope and spirit of the invention. Example 18 Designation of Peptide Mapping and Intacting Molecules of the Conjugates of Hosting Number PTA-9404 142769.doc -214· 201021828 Quantitative Analysis Using Peptide Mapping and Amine End Sequencing Techniques and Complete Molecular Weight Analysis for Fusion of Designated Accession Number PTA-9404 The Ha8_4c4.1 monoclonal antibody produced by the tumor was analyzed. Since it is observed that there are two light chain sequences corresponding to Ha8-4c4·1 VL pure line 1-B3 and pure line 2-A7 in the deposited fusion tumor, these studies are intended to prove that the deposit is secreted by the deposit or the like. The identity of the antibody. The amino acid sequence data generated by the experiments indicated that the fusion tumor only secreted a single monoclonal antibody corresponding to Ha8-4c4.1 VL pure line 1-B3. This ® outer molecular weight analysis is consistent with the analysis of the predicted molecular weight of the pure 1-B3. The data generated by these studies led to the conclusion that the deposited fusion tumor only secreted antibodies containing the Ha8-4c4.1 VH heavy chain and the Ha8-4c4.1 VL pure line 1-B3 light chain. Example 19 Recombinant functional analysis of Ha8-4c4.1 VL pure line 1-B3 monoclonal strain expressed in Chinese hamster ovary cells (CHO) was obtained from Ha8-4c4.1 VL pure line 1-B3 (SEQ. ID NO · The amino acid of the light chain of amino acid residues 1 to 134) and the pure line of 2-A7 (amino acid residues 1 to 133 of SEQ. ID NO: 18) and the light chain κ constant The polynuclear ATS of the region is fused and colonized in the expression vector. The expression vector containing the two light chains was transfected into Chinese hamster ovary (CHO) cells. Both chains express light bond proteins in the cell. The 1 - B 3 pure line exhibits a protein with a predicted molecular weight. In contrast, the molecule 1 of the protein expressed by the 2-A7 pure line in the cell exhibited greater than the predicted molecular weight. This result is consistent with the protein retention of the leader sequence. 0 142769.doc -215- 201021828 The 1-B3 and 2-A7 expression vectors were co-transfected with constant and heavy chain sequences to allow assembly of recombinant monoclonal antibodies. When co-transfected with a polynucleotide encoding the heavy chain Ha8-4c4_l VH (containing the sequence shown by amino acid residues 1 to 146 of SEQ. ID NO: 17), only the sequence containing 1-B3 is contained. CHO cells expressing the vector secrete fully assembled monoclonal antibodies. The 2-A7 sequence does not support recombination. The expression of monoclonal antibodies and the above molecular weight data suggest that the 2-A7 light chain has not been treated to remove the leader sequence. If this hypothesis is correct, retaining the 2-A7 light chain of the leader leader may explain the inability to secrete appropriately assembled monoclonal antibodies. The ability of recombinant monoclonal antibodies secreted by CHO cells transfected with the sequences of pure 1-B3 and Ha8-4c4.1 VH to bind to the 58P1D12 protein was tested. The recombinant antibody display binds to the 58P1D12 protein with the same affinity as the secreted monoclonal antibody. These results support the results described in Example 18, indicating that the monoclonal antibodies secreted by the fusionoma of the assigned accession number PTA-9404 contain the pure light chain of the pure line 1-B3. Table Table I: Organizations showing 58P1D12 in malignancy
表II :胺基酸缩寫 單字母 三字母 全名 F Phe 苯丙胺酸 L Leu 白胺酸 S Ser 絲胺酸 142769.doc -216- 201021828 Y Tyr 酪胺酸 c Cys 半胱胺酸 w Trp 色胺酸 P Pro 脯胺酸 H His 組胺酸 Q Gin 麩胺醯胺 R Arg 精胺酸 I lie 異白胺酸 M Met 甲硫胺酸 T Thr 蘇胺酸 N Asn 天門冬醯胺 K Lys 離胺酸 V Val 纈胺酸 A Ala 丙胺酸 D Asp 天冬胺酸 E Glu 麩胺酸 G Gly 甘胺酸 表III :胺基酸取代矩陣 由GCG軟體9.0 BLOSUM62胺基酸取代矩陣(方塊取代矩 陣)修改而成。值愈高,則相關天然蛋白質中存在取代的 可能性愈高。 Q-1 p-1 N-2 MV L-1 K-1 ii T1 - H-2 Go F-2 E-1 D-2 Co A 4 -3 I -3 -3 -2 -4 -3 -3 2 -3 -3-3 -3 -4 -2 -3 R-1-3-2 -3 -3 -3 -3 • A Y-2 W-3 V ο To D -3 -4 -3 F G 3-3 1-2 -1-3 -2-2 2o ·3·2 -3-2 -4-2 3o o-3 o-4 -3-2 o-4 -1-2 -36 -2 1A -2 -3 11 I -3 -3 -2 -2 -3 -3 -3 -3 -2-11 -2-10 -20 o -3-2-2 -3-26 -2 iklmnpqrstv w y 12112312221 >-I I I I I I I I I I I 2 7 33214423323 _. _. 11111111.11 11 1 3-2!-3-2-2-3-204 •217- 142769.doc 201021828 表IV : HLA I/II類基元/超基元 表IV (A) : HLA I類超基元/基元Table II: Amino acid abbreviation single letter three letter full name F Phe phenylalanine L Leu leucine S Ser serine 142769.doc -216- 201021828 Y Tyr tyrosine c Cys cysteine w Trp tryptamine Acid P Pro Proline H His Histamine Q Gin Glutamine Amine R Arg Ginsic Acid I lie Isoleucine M Met Methionine T Thr Sulfate N Asn Aspartame K Lys Amino Acid V Val proline A Ala alanine D Asp aspartate E Glu glutamic acid G Gly glycine Table III: Amino acid substitution matrix modified by GCG software 9.0 BLOSUM62 amino acid substitution matrix (block substitution matrix) to make. The higher the value, the higher the likelihood of substitution in the relevant natural protein. Q-1 p-1 N-2 MV L-1 K-1 ii T1 - H-2 Go F-2 E-1 D-2 Co A 4 -3 I -3 -3 -2 -4 -3 -3 2 -3 -3-3 -3 -4 -2 -3 R-1-3-2 -3 -3 -3 -3 • A Y-2 W-3 V ο To D -3 -4 -3 FG 3 -3 1-2 -1-3 -2-2 2o ·3·2 -3-2 -4-2 3o o-3 o-4 -3-2 o-4 -1-2 -36 -2 1A - 2 -3 11 I -3 -3 -2 -2 -3 -3 -3 -3 -2-11 -2-10 -20 o -3-2-2 -3-26 -2 iklmnpqrstv wy 12112312221 >- IIIIIIIIIII 2 7 33214423323 _. _. 11111111.11 11 1 3-2!-3-2-2-3-204 •217- 142769.doc 201021828 Table IV: HLA I/II Class Primitives/Super Primitive Table IV (A ) : HLA class I super primitives / primitives
超基元 位置 位置 位置 2 (—級錨點) 3 (—級錨點) C末端(一級錨點) A1 TILVMS FWY A2 lAVMATQ YVMATL A3 VSMA7X7 RK A24 YFWIVLMT FIYWLM B7 P VILFMWYA B27 RHK FYLWMIVA B44 ED FWYLIMVA B58 ATS FWYLIVMA B62 QLIVMP YWYMIVLA 基元 A1 TSM Y A1 DIL45 Y A2.1 imVQIAT \LIMAT A3 LMVISATFCGD KYRWE4 All VTMLISAGNCDF KRYH A24 YFWM FLIW A*310 1 MVT^Z/5 RK A*330 1 MVALF/ST RK A*680 1 PNTMSL1 RK B*0702 P IMFWYAIV B*350 1 P LMFWY/以 B51 P IA\¥WYAM B*530 1 P IMFWY^IF B*540 1 P ATWLMFWY 粗體殘基較佳,斜體殘基次佳:若肽在各一級錨位處具 有如上表中所指定之基元或超基元的一級錨點,則認為該 肽具有基元。 表IV (B) : HLA II類超基元Super element position position 2 (-level anchor point) 3 (-level anchor point) C end (first stage anchor point) A1 TILVMS FWY A2 lAVMATQ YVMATL A3 VSMA7X7 RK A24 YFWIVLMT FIYWLM B7 P VILFMWYA B27 RHK FYLWMIVA B44 ED FWYLIMVA B58 ATS FWYLIVMA B62 QLIVMP YWYMIVLA Primitive A1 TSM Y A1 DIL45 Y A2.1 imVQIAT \LIMAT A3 LMVISATFCGD KYRWE4 All VTMLISAGNCDF KRYH A24 YFWM FLIW A*310 1 MVT^Z/5 RK A*330 1 MVALF/ST RK A*680 1 PNTMSL1 RK B*0702 P IMFWYAIV B*350 1 P LMFWY/B51 P IA\¥WYAM B*530 1 P IMFWY^IF B*540 1 P ATWLMFWY Bold residue is preferred, italic residue is suboptimal: if peptide A peptide having a motif or a super-primary as defined in the above table at each level of anchorage is considered to have a motif. Table IV (B): HLA class II supermotifs
1 6 9 W,F,V,V,.I,L Α,Υ,Ι, L,P,C, S,T A, V, I, L, C, S, T, Μ, Y 142769.doc -218- 201021828 表IV (C) : HLA II類基元1 6 9 W, F, V, V, .I, L Α, Υ, Ι, L, P, C, S, TA, V, I, L, C, S, T, Μ, Y 142769.doc - 218- 201021828 Table IV (C): HLA Class II Primitives
基元 一級錨點1 2 3 4 5 一級錨點6 7 8 9 DR4 較佳 VUYLIVW Μ T I VSTCPALIM MH MH 有害 W R WDE DR1 較佳 MYLIVWY PAMQ VUATSPLIC M AVM 有害 C CH FD CWD GDE D DR7 較佳 MYLIVWY Μ W A WMSACTPL M IV 有害 C G GRD N G DR3 基元 一級錨點1 2 3 一級錨點4 5 一級錨點6 較佳 基元a LIVMFY D 較佳 基元b LIVMFAY DNQEST KRH DR超 基元 MYLIVWY VMSTACPLIElementary level anchor point 1 2 3 4 5 Level 1 anchor point 6 7 8 9 DR4 Better VUYLIVW Μ TI VSTCPALIM MH MH Harmful WR WDE DR1 Better MYLIVWY PAMQ VUATSPLIC M AVM Harmful C CH FD CWD GDE D DR7 Better MYLIVWY Μ WA WMSACTPL M IV Harmful CG GRD NG DR3 Elementary level anchor point 1 2 3 Level 1 anchor point 4 5 Level 1 anchor point 6 Preferred element a LIVMFY D Preferred element b LIVMFAY DNQEST KRH DR super element MYLIVWY VMSTACPLI
斜體殘基表示次佳或「财受」殘基 表IV (D) : HLA I類超基元 位置: 1 2 3 4 5 6 7 8 C末端 超基 元 A1 一級錯點 一級销點 TILVMS FWY A2 一級錯點 一級麵點 LIVlVL4rC? LIVMAT A3 較佳 一級錯點 VSMA7Z/ YFW (4/5) YFW (3/5) YFW (4/5) P (4/5) 一級錯》 RK 有害 DE DE (3/5); P(5/5) (4/5) A24 一級鑛點 一級金m YFWIVLMT FIYWLM B7 較佳 FWY 一級供點 FWY FWY 一級供點 (5/5) LIVM P (4/5) (3/5) VILFMWYA 有害 (3/5) DE DE G QN DE (3/5); P(5/5); G(4/5); A(3/5); QN(3/5) (3/5) (4/5) (4/5) (4/5) ❹ 142769.doc •219- 201021828Italicized residues indicate suboptimal or "acceptance" residues Table IV (D): HLA Class I supermotif positions: 1 2 3 4 5 6 7 8 C-terminal super-primary A1 First-order error-point one-stage pin point TILVMS FWY A2 First-order error point First-level point LIVlVL4rC? LIVMAT A3 Preferred first-order point VSMA7Z/YFW (4/5) YFW (3/5) YFW (4/5) P (4/5) First-order error RK Harmful DE DE (3 /5); P(5/5) (4/5) A24 Level 1 point level gold m YFWIVLMT FIYWLM B7 Better FWY Level 1 point FWY FWY Level 1 point (5/5) LIVM P (4/5) (3 /5) VILFMWYA Harmful (3/5) DE DE G QN DE (3/5); P(5/5); G(4/5); A(3/5); QN(3/5) (3 /5) (4/5) (4/5) (4/5) ❹ 142769.doc •219- 201021828
B27 一級錯點 一級销點 RHK ¥YLWMIVA B44 一級錨點 一級销點 ED FWYLIMVA B58 —級錨點 一級錯點 ATS VW^LIVMA B62 一級銘點 一級销點 QLIVMP FWIMIVLA 斜體殘基表示次佳或「耐受」殘基 表IV (E) : HLA I類基元B27 First-level wrong point first-level sales point RHK ¥YLWMIVA B44 First-level anchor point-level pin point ED FWYLIMVA B58 - level anchor point level one point error ATS VW^LIVMA B62 First-level point point level pin point QLIVMP FWIMIVLA Italic residue indicates sub-optimal or "resistant Residue Table IV (E): HLA Class I Primitives
位置 1 2 3 4 5 6 7 8 9 C末端 或C末端 A1 較佳 GFYW 一級 DEA YFW P DEQN YFW -級 9-mer 鏘ft «ft 有害 DE STM RHKLIVMP A G A Y 春 A1 較佳 GRHK ASTCLIVM GSTC ASTC LIVM DE 一級 9-mer DEAS 鏘ft Y 有害 A RHKDEPYFW DE PQN RHK PG GP A1 較佳 YFW 一級 DEAQN A YFWQN PASTC GDE P 一級 10-mer 鏘ft STM Y 有害 GP RHKGLIVM DE RHK QNA RHKYFW RHK A A1 較佳 YFW STCL1VM —級 A YFW PG G YFW 一級 10-mer DEAS Y 有害 RHK RHKDEPYFW P G PRHK QN A2.1 較佳 YFW 一級 YFW STC YFW A P —級 9-mer 鏘ft 鏘點 有害 DEP UAIVQAT DERKH RKH DERKH \LJMAT A2.1 較佳 AYFW 一級 LVIM G G FYWLVIML —級 10-mer 鏘ft 鏘ft 有害 DEP IMIVQAT DE RKHA P RKH DERKH RKH WLIMAT A3 較佳 RHK —級 YFW PRHKYFW A YFW P 一級 鶬ft LMVISATFCGD 鏘贴 KYKHFA ❿ 有害 DEP DE All 較佳 A 一級 YFW YFW A YFW YFW P —級 鎬贴 «Α VTLMISAGNCZ)F KRYH 有害 DEP A G A24 較佳 YFWRHK 一級 STC YFW YFW —级 9-mer «ft 鏘ft YFWA/· FLIW 有害 DEG DE G QNP DHRHK G AQN A24 較佳 一級 P YFWP P -級 10-mer 鏘典 Υ¥ΨΜ FLIW 有害 GDE QN RHK DE A QN DEA A3101 較佳 RHK 一級 YFW P YFW YFW AP 一級 鎬 鏘黏 UVTALJS RA: 有害 DEP DE ADE DE DE DE A3301 較佳 -級 YFW AYFW -級 錯ft MVALVIST RK 有害 GP DE -220- 142769.doc 201021828Position 1 2 3 4 5 6 7 8 9 C-end or C-end A1 Better GFYW Level 1 DEA YFW P DEQN YFW - Grade 9-mer 锵ft «ft Harmful DE STM RHKLIVMP AGAY Spring A1 Better GRHK ASTCLIVM GSTC ASTC LIVM DE Level 1 9-mer DEAS 锵ft Y Harmful A RHKDEPYFW DE PQN RHK PG GP A1 Better YFW Level 1 DEAQN A YFWQN PASTC GDE P Level 10 -mer 锵ft STM Y Harmful GP RHKGLIVM DE RHK QNA RHKYFW RHK A A1 Preferred YFW STCL1VM - Grade A YFW PG G YFW First-class 10-mer DEAS Y Harmful RHK RHKDEPYFW PG PRHK QN A2.1 Better YFW First-class YFW STC YFW AP - Grade 9-mer 锵 ft 有害 Defective DEP UAIVQAT DERKH RKH DERKH \LJMAT A2.1 AYFW Level 1 LVIM GG FYWLVIML - Grade 10 - mer 锵 ft 锵 ft Harmful DEP IMIVQAT DE RKHA P RKH DERKH RKH WLIMAT A3 Preferred RHK - Grade YFW PRHKYFW A YFW P Level 1 鶬 ft LMVISATFCGD 锵 Post KYKHFA 有害 Harmful DEP DE All Better A First grade YFW YFW A YFW YFW P - grade Α贴«Α VTLMISAGNCZ)F KRYH Harmful DEP AG A24 Preferred YFWRHK First Class STC YFW YFW - Grade 9-mer «ft 锵ft YFWA/· FLIW Harmful DEG DE G QNP DHRHK G AQN A24 Preferred Level P YFWP P - Level 10 -mer Υ典Υ¥ΨΜ FLIW Harmful GDE QN RHK DE A QN DEA A3101 Preferred RHK First Class YFW P YFW YFW AP First Class Sticky UVTALJS RA: Harmful DEP DE ADE DE DE DE A3301 Better - Grade YFW AYFW - Level Error Ft MVALVIST RK Harmful GP DE -220- 142769.doc 201021828
位置 1 2 3 4 5 6 7 8 9 C末端 或C末鳩 A6801 較佳 YFWSTC 一级 YFWLIVM YFW P 一 UL 有害 GP «ft AVT皿/ DEG RHK A 鋤點 RK B0702 較佳 RHKFWY -級 RHK RHK RHK RHK PA —級 有害 DEQNP 錯ft P DEP DE DE GDE QN DE At典 IMYWYAIV B3501 較佳 FWYLIVM 一級 FWY FWY -级 有害 AGP P G G 供A LMFWY似 B51 較佳 LIVMFWY —級 FWY STC FWY G FWY _級 有害 AGPDER HKSTC 錯點 P DE G DEQN GDE UMVWYAM B5301 較佳 LIVMFWY —級 FWY STC FWY LIVMFWY FWY —級 有害 AGPQN 麯贴 P G RHKQN DE 钃A IMFWY^IK ^5401 較佳 有害 FWY GPQNDE —級 鏘It P FWYLIVM GDESTC LIVM RHKDE DE ALIVM QNDGE FWYAP DE -級 鏘ft AnVLMFfVY 表 IV (F) __ HLA超型之總結 不同種群之HLA超型之總體表現型頻率 特異性 表現型頻率 超型 位置2 C末端 高加索人北美黑人曰本 (Caucasian) (N.A.Black)人 中國人 西班牙人平均 (Hispanic) B7 P AILMVFWY 43.2 55.1 57.1 43.0 49.3 49.5 A3 AILMVST RK 37.5 42.1 45.8 52.7 43.1 44.2 A2 AILMVT AILMVT 45.8 39.0 42.4 45.9 43.0 42.2 A24 YF (WIVLMT) FI (YWLM) 23.9 38.9 58.6 40.1 38.3 40.0 Q B44 E(D) FWYLIMVA 43.0 21.2 42.9 39.1 39.0 37.0 A1 TI(LVMS) FWY 47.1 16.1 21.8 14.7 26.3 25.2 B27 RHK FYL (WMI) 28.4 26.1 13.3 13.9 35.3 23.4 B62 QL(IVMP) FWY(MIV) 12.6 4.8 36.5 25.4 11.1 18.1 B58 ATS FWY(LIV) 10.0 25.1 1.6 9.0 5.9 10.3 221- 142769.doc 201021828 表 IV (G): I藉由不同HLA超型組合得到的群體覆蓋率計篡傕 HLA超型 A2,A3&B7 A2,A3,B7, A24, B44及A1 A2,A3,B7, A24, B44,A1, 着ίγ i r『r B27, B62及B58 表V :頻繁出現之基<Location 1 2 3 4 5 6 7 8 9 C-end or C-end A6801 Better YFWSTC First-class YFWLIVM YFW P One UL Harmful GP «ft AVT dish / DEG RHK A RK point RK B0702 Better RHKFWY - Grade RHK RHK RHK RHK PA - level harmful DEQNP error ft P DEP DE DE GDE QN DE At code IMYWYAIV B3501 preferred FWYLIVM first level FWY FWY - level harmful AGP PGG for A LMFWY like B51 better LIVMFWY - level FWY STC FWY G FWY _ level harmful AGPDER HKSTC wrong Point P DE G DEQN GDE UMVWYAM B5301 Preferred LIVMFWY - Grade FWY STC FWY LIVMFWY FWY - Grade harmful AGPQN Curved PG RHKQN DE 钃A IMFWY^IK ^5401 Better harmful FWY GPQNDE - Class 锵 It P FWYLIVM GDESTC LIVM RHKDE DE ALIVM QNDGE FWYAP DE - Grade 锵 ft AnVLMFfVY Table IV (F) __ Summary of HLA supertypes Overall phenotype of HLA supertypes of different populations Frequency-specific phenotype Frequency supertype location 2 C-terminal Caucasian North American black 曰 (Caucasian) (NABlack) Chinese Chinese Hispanic Average (Hispanic) B7 P AILMVFWY 43.2 55.1 57.1 43.0 49.3 49.5 A3 AILMVST RK 37.5 42.1 45.8 52.7 43.1 44.2 A2 AILMVT AILMVT 45.8 39.0 42.4 45.9 43.0 42.2 A24 YF (WIVLMT) FI (YWLM) 23.9 38.9 58.6 40.1 38.3 40.0 Q B44 E(D) FWYLIMVA 43.0 21.2 42.9 39.1 39.0 37.0 A1 TI(LVMS) FWY 47.1 16.1 21.8 14.7 26.3 25.2 B27 RHK FYL (WMI) 28.4 26.1 13.3 13.9 35.3 23.4 B62 QL(IVMP) FWY(MIV) 12.6 4.8 36.5 25.4 11.1 18.1 B58 ATS FWY(LIV) 10.0 25.1 1.6 9.0 5.9 10.3 221- 142769.doc 201021828 Table IV (G): I. Population coverage by different HLA supertype combinations HLA supertype A2, A3 & B7 A2, A3, B7, A24, B44 and A1 A2, A3, B7, A24, B44, A1, ίγ ir 『r B27, B62 and B58 Table V: Frequently occurring bases<
16% PH結構域 架之成分閉普列克受質蛋白 (pleckstrin)同源性16% PH domain, the composition of the closed pleckstrin homology
EGF 34% EGF樣結構域EGF 34% EGF-like domain
Rvt 49% 逆轉錄酶(RNA 依賴性DNA聚 合酶) 30-40個胺基酸長’存在於膜妗人苍 白質之胞外钱中或分泌^ 氧4匕還原_ql (Oxidoredql) 25% Ank重複序列 NADH·泛輥/質 32% 艘醒(複合物I), 不同鏈 ^胞質蛋白,使整體 骨架結合_____ 結合膜。涉殳跨越膜之質子移位 142769.doc -222- 201021828 EF 手形(Efhand)Rvp 24% 79% EF手形 i轉錄病 胺醯基蛋白醢' ¥原蛋白— 殘基環組成之約結合域,該12 殘基環兩側與12殘基α-螺旋結構域 側接_____ 天冬胺酿基或天冬胺酸蛋白酶,以 催化性天冬胺醯某殘某為中心 膠原蛋白 42% 股螺 旋重複序列(2〇 個複本) 涉及結締組織形成的胞外結構蛋白 質。該序列由G-X-Y組成且多肽鏈 形成三股螺旋。Rvt 49% reverse transcriptase (RNA-dependent DNA polymerase) 30-40 amino acid lengths are present in the extracellular money of the membrane pallidus or secreted by oxygen 4 匕 reduction _ql (Oxidoredql) 25% Ank The repeat sequence NADH·Pan Roll/Quality 32% Awakening (Complex I), different chain cytoplasmic proteins, binds the overall skeleton to the _____ binding membrane. Proton shift across the membrane 142769.doc -222- 201021828 EF Hand (Efhand) Rvp 24% 79% EF hand i transcriptional amine thiol protein 醢 ' ¥ original protein - the binding domain composed of the residue loop, 12 residue loops are flanked by 12-residue α-helical domains _____ aspartame or aspartic acid protease, with catalytic aspartame 醯 a residue as the center of collagen 42% strand repeat Sequence (2 copies) An extracellular structural protein involved in the formation of connective tissue. This sequence consists of G-X-Y and the polypeptide chain forms a triple helix.
Fn3 20% III型纖維結合蛋 白結構域 位於受體之胞外配體結合區中且長 度為約200個胺基酸殘基,其中兩對 半胱胺酸以二琉鍵牵連 7tm 19% 7跨膜受體(視紫 質家族) 七個疏水性跨膜區,其中N末端位於 細胞外,而C末端位於細胞質內。信 號經由G蛋白質 _ ❹表 VI :基於細應之Ha8-4c4.1親和性測定The Fn3 20% type III fibronectin domain is located in the extracellular ligand binding region of the receptor and is about 200 amino acid residues in length, of which two pairs of cysteine are implicated by a diterpene bond of 7tm 19% 7 span. Membrane receptor (rhodopsin family) Seven hydrophobic transmembrane regions, where the N-terminus is located extracellularly and the C-terminus is located within the cytoplasm. Signal via G protein _ ❹ Table VI: Determination of affinity based on Ha8-4c4.1
表 VI(A) : Ha8-4c4.1 對 3T3-58P1D12細胞之FACS MFITable VI(A): Ha8-4c4.1 FACS MFI for 3T3-58P1D12 cells
Ha8-4c4.1 MAb 濃度(nM) 58P1D12-3T3(MFI) 80 1198 40 1167 20 _ 1185 10 1052 5.0 828 2.5 558 1.3 340 0.625 201 0.313 110 0.156 58 0.0781 30 0.0391 18 0.0195 8 0.0098 3 0.0049 0Ha8-4c4.1 MAb Concentration (nM) 58P1D12-3T3 (MFI) 80 1198 40 1167 20 _ 1185 10 1052 5.0 828 2.5 558 1.3 340 0.625 201 0.313 110 0.156 58 0.0781 30 0.0391 18 0.0195 8 0.0098 3 0.0049 0
表VI(B):藉由Graphpad Prisim軟體算得的親和性值 Ha8-4c4.1飽和曲線Table VI(B): Affinity value calculated by Graphpad Prisim software Ha8-4c4.1 saturation curve
-223 - 142769.doc 201021828 BMAX (MFI、 1296 KD(nM) 3.0 【圖式簡單說明】 圈1A圖1A中展示58P1D12變異體1(亦稱為「58P1D12 v. 1」)之cDNA及胺基酸序列。起始甲硫胺酸加有下劃線。 開放閱讀框架自核酸380延續至核酸1201,包括終止密碼 子; 圈1B圖1B中展:^58P1D12變異體2(亦稱為「58P1D12 ν·2」)之cDNA及胺基酸序列。起始曱硫胺酸之密碼子加有 下劃線。開放閱讀框架自核酸388延續至核酸1086,包括 終止密碼子; 圈1C圖1C中展示58P1D12變異體3(亦稱為「58P1D12 v.3」)之cDNA及胺基酸序列。起始甲硫胺酸之密碼子加有 下劃線。開放閱讀框架自核酸206延續至核酸904,包括終 止密碼子; 圖1D圖1D中展示58P1D12變異體4(亦稱為「58P1D12 ν·4」)之cDNA及胺基酸序列。起始曱硫胺酸之密碼子加有 下劃線。開放閱讀框架自核酸206延續至核酸916,包括終 止密碼子。 圖1E圖1E中展示58P1D12變異體5(亦稱為r58pmi2 ν·5」)之cDNA及胺基酸序列。起始曱硫胺酸之密碼子加有 下劃線。開放閱讀框架自核酸106延續至核酸816,包括終 止密碼子。 圈 IF 58P1D12 v_6 至 v.15 (58P1D12 v.l 之 SNP 變異體)。 142769.doc -224- 201021828 變異體58P1D12 ν·6至v.15為與58P1D12 v.l具有單一核芽 酸差異之變異體。雖然該等SNP變異體單獨展示,但其亦 可以任何組合及以上列於圖1 A-1E中之任何轉錄物變異體 之形式存在。 圈2 58P1D12抗體之核酸及胺基酸序列。 圈2A Ha8_4c4· 1 VH之cDNA及胺基酸序列。前導序列加 有雙下劃線,且重鏈恆定區之一部分加有下劃線。 圈2B Ha8-4c4.1 VL純系2-A7之cDNA及胺基酸序列。俞 導序列加有雙下劃線,且輕鏈恆定區加有下劃線。 圈2C Ha8-4c4.1 VL純系1-B3之cDNA及胺基酸序列。前 導序列加有雙下劃線,且輕鏈恆定區加有下劃線。 圈3 58P1D12抗體(「MAb」)之胺基酸序列。 圈3A Ha8-4c4.1 VH之胺基酸序列。前導序列加有雙下 劃線,且重鏈恆定區之一部分加有下劃線。 圈3B Ha8-4c4.1 VL純系2-A7之胺基酸序列。前導序列 加有雙下劃線,且輕鏈恆定區加有下劃線。 ❹ 圖3C Ha8-4c4.1 VL純系1-B3之胺基酸序列。前導序列 加有雙下劃線,且輕鏈恆定區加有下劃線。 圈4 58P1D12抗體重鏈可變區與人類Ig生殖系之比對。 圔 4A Ha8-4c4.1 VH(SEQ ID NO·· 17)與人類 Ig生殖系之 比對。 圈 4B Ha8-4c4.1 VL純系 2-A7(SEQ ID NO: 18)與人類 Ig 生殖系之比對。 圈 4C Ha8-4c4.1 VL純系 1-B3(SEQ ID NO: 19)與人類 Ig 142769.doc -225· 201021828 生瘦系之比對。 圈5 MAb Ha8-4c4.1抑制表現58P1D12之MDCK細胞之 遷移。用逆轉錄病毒(空載體[Neo]或58P1D12)轉導犬科 MDCK細胞。藉由將4xl04個於0.1% FBS加25 pg/mL對照 MAb 或 MAb Ha8-4c4.1 中之 MDCK/58P1D12 細胞塗於 Boyden Transwell設備之上腔室内且容許該等細胞向下腔 室中之10% FBS遷移16小時來評估遷移率。用鈣黃綠素 AM染料(Calcein AM dye)將俘獲於底部過濾器上的細胞標 記30分鐘且攝影。包括空載體表現細胞以用作陰性對照。® 經由MetaMorph成像軟體量化細胞螢光(遷移)之量。MAb Ha8-4c4.1抑制細胞遷移達約45%,而陰性對照MAb並不抑 制細胞遷移(*ρ<〇.〇〇〇1)。 圈 6 MAb Ha8-4c4.1抑制表現 58P1D12之 OVCAR-5鉍胞 之侵入。用逆轉錄病毒(空載體[Neo]或58P1D12)轉導人類 卵巢癌細胞株OVCAR-5。將Boyden Transwell腔室塗上一 層Matrigel®以便細胞侵入。將MAb Ha8-4c4.1或同種型匹 配對照MAb(25 pg/mL)添加至塗有Matrigel®之設備上腔室胃 内的 0.1% FBS 中之 4χ104 個 OVCAR-5/58P1D12 細胞中。容 許該等細胞向裝載於下腔室内之10% FBS侵入24小時。用 鈣黃綠素AM染料將結合至底部過濾器的細胞標記30分鐘 且攝影。與對照MAb相比,MAb Ha8-4c4.1顯著抑制細胞 侵入達75% (*ρ<0·0001)。 圈7比較58P1D12 MAb之活髏外功能活性。以腫瘤細 胞遷移及腫瘤細胞侵入檢定測試完全人類58P1D12 MAb 142769.doc -226- 201021828-223 - 142769.doc 201021828 BMAX (MFI, 1296 KD(nM) 3.0 [Simplified Schematic] Circle 1A Figure 1A shows the cDNA and amino acid of 58P1D12 variant 1 (also known as "58P1D12 v. 1") Sequence. The initial methionine is underlined. The open reading frame extends from nucleic acid 380 to nucleic acid 1201, including the stop codon; circle 1B is shown in Figure 1B: ^58P1D12 variant 2 (also known as "58P1D12 ν·2" cDNA and amino acid sequence. The codon of the starting thiol amide is underlined. The open reading frame extends from nucleic acid 388 to nucleic acid 1086, including the stop codon; circle 1C Figure 1C shows 58P1D12 variant 3 (also The cDNA and amino acid sequence referred to as "58P1D12 v.3"). The codon for the initiating methionine is underlined. The open reading frame extends from nucleic acid 206 to nucleic acid 904, including the stop codon; Figure 1D Figure 1D The cDNA and amino acid sequence of 58P1D12 variant 4 (also known as "58P1D12 ν·4") is shown. The codon of the starting thiol amide is underlined. The open reading frame extends from nucleic acid 206 to nucleic acid 916, including Stop codon. Figure 1E shows the 58P1D12 variant 5 in Figure 1E (also The cDNA and amino acid sequence of r58pmi2 ν·5"). The codon of the starting thiol amide is underlined. The open reading frame extends from nucleic acid 106 to nucleic acid 816, including the stop codon. Circle IF 58P1D12 v_6 to v .15 (SNP variant of 58P1D12 vl). 142769.doc -224- 201021828 Variant 58P1D12 ν·6 to v.15 are variants with a single nuclear phytic acid difference from 58P1D12 vl. Although these SNP variants are displayed separately However, it may also be present in any combination and in the form of any of the transcript variants listed above in Figure 1 A-1E. Circle 2 The nucleic acid and amino acid sequence of the 58P1D12 antibody. Circle 2A Ha8_4c4· 1 VH cDNA and amine group Acid sequence. The leader sequence is double underlined, and one part of the heavy chain constant region is underlined. Circle 2B Ha8-4c4.1 VL pure 2-A7 cDNA and amino acid sequence. The Yu guide sequence is double underlined, and The light chain constant region is underlined. Circle 2C Ha8-4c4.1 VL pure 1-B3 cDNA and amino acid sequence. The leader sequence is double underlined and the light chain constant region is underlined. Circle 3 58P1D12 antibody (" Amino acid sequence of MAb") Circle 3A Ha8-4 C4.1 Amino acid sequence of VH. The leader sequence is double underlined and one of the heavy chain constant regions is underlined. Loop 3B Ha8-4c4.1 VL pure 2-A7 amino acid sequence. The leader sequence is double underlined and the light chain constant region is underlined. ❹ Figure 3C Ha8-4c4.1 VL pure 1-B3 amino acid sequence. The leader sequence is double underlined and the light chain constant region is underlined. Alignment of the heavy chain variable region of the loop 4 58P1D12 antibody to the human Ig germline.圔 4A Ha8-4c4.1 VH (SEQ ID NO..17) is aligned with the human Ig germline. Circle 4B Ha8-4c4.1 VL pure line 2-A7 (SEQ ID NO: 18) is aligned with the human Ig germ line. Circumference of 4C Ha8-4c4.1 VL pure line 1-B3 (SEQ ID NO: 19) and human Ig 142769.doc -225· 201021828. Loop 5 MAb Ha8-4c4.1 inhibits migration of MDCK cells expressing 58P1D12. Canine MDCK cells were transduced with retrovirus (empty vector [Neo] or 58P1D12). 4x10 of MDCK/58P1D12 cells in 0.1% FBS plus 25 pg/mL control MAb or MAb Ha8-4c4.1 were applied to the chamber above the Boyden Transwell device and allowed to pass into the lower chamber of the cells. % FBS migrated for 16 hours to assess mobility. The cells captured on the bottom filter were labeled with calcein AM dye for 30 minutes and photographed. An empty vector was used to express the cells for use as a negative control. ® quantify the amount of cellular fluorescence (migration) via the MetaMorph imaging software. MAb Ha8-4c4.1 inhibited cell migration by approximately 45%, while the negative control MAb did not inhibit cell migration (*ρ<〇.〇〇〇1). Loop 6 MAb Ha8-4c4.1 inhibits the invasiveness of the OVCAR-5 cells of 58P1D12. Human ovarian cancer cell line OVCAR-5 was transduced with retrovirus (empty vector [Neo] or 58P1D12). The Boyden Transwell chamber was coated with a layer of Matrigel® for cell invasion. MAb Ha8-4c4.1 or an isotype matched control MAb (25 pg/mL) was added to 4 χ 104 OVCAR-5/58P1D12 cells in 0.1% FBS in the stomach of the upper chamber of the Matrigel®-coated device. These cells were allowed to invade for 10 hours with 10% FBS loaded in the lower chamber. Cells bound to the bottom filter were labeled with calcein AM dye for 30 minutes and photographed. Compared to the control MAb, MAb Ha8-4c4.1 significantly inhibited cell invasion by 75% (*ρ<0·0001). Circle 7 compares the active functional activity of 58P1D12 MAb. Testing human cancer with tumor cell migration and tumor cell invasion assay 58P1D12 MAb 142769.doc -226- 201021828
Ha8-4c4.1 (γΐκ)、Ha8-6.1 (γ2κ)及 Ha8-7.1 (γΐκ)。使用 MDCK/58P1D12細胞以Boyden Trangwell腔室遷移檢定評 估腫瘤細胞遷移。藉由將4χ104個於0.1% FBS加25 pg/mL 對照MAb或58P1D12 MAb中之MDCK/58P1D12細胞塗於 Boyden Transwell設備之上腔室内且容許該等細胞向下腔 室中之10% FBS遷移16小時來評估遷移。用鈣黃綠素AM 染料將俘獲於底部過濾器上的細胞標記30分鐘且攝影。經 由MetaMorph成像軟體量化細胞螢光(遷移)之量。結果表 ® 明,Ha8-4c4.1 及 Ha8-7.1 MAb抑制細胞遷移,而 Ha8-6.1 MAb不抑制遷移。 使用塗有一層Matrigel®以便細胞侵入之Boyden Transwell腔室評估腫瘤細胞侵入。簡而言之,將58P1D12 MAb或同種型匹配對照MAb(25 pg/mL)添加至塗有 Matrigel®之設備上腔室内的〇·1% FBS中之4x104個OVCAR-5/58P1D12細胞中。容許該等細胞向裝載於下腔室内之 10% FBS侵入24小時。用鈣黃綠素AM染料將結合至底部 過濾器的細胞標記30分鐘且攝影。 結果表明’ Ha8-4c4.1及Ha8-6.1 MAb抑制腫瘤細胞侵 入,而Ha8-7_1 MAb不抑制侵入。 圈 8 MAb Ha8-4c4.1抑制 58P1D12 誘發之 HUVEC 管形 成。將重組58P1D12 ECD (3 pg/mL)與30 pg/mL之同種型 匹配對照MAb或MAb Ha8-4c4.1—起添加至0.1% FBS中之 HUVEC (5xl〇4個/孔)中。接著將該等細胞塗於Matrigel®上 且容許形成管16小時。計算管數。對照MAb不影響 142769.doc • 227- 201021828 58P1D12 ECD 誘發之 HUVEC 管形成,而 MAb Ha8-4c4.1 抑 制管形成達50% (*ρ = 0·005)。 圖9 58P1D12 MAb :活髏外HUVEC管形成之比較。將 重組 58P1D12 ECD (3 pg/mL)與 30 gg/mL之 58P1D12 MAb Ha8-4c4.1、Ha8_6.1 或Ha8-7.1— 起添加至 0.1% FBS 中之 1111¥£(:(5><104個/孔)中。接著將該等細胞塗於]^&11^61@上 且容許形成管16小時。計算管數。結果表明,所有三種 58PlD12MAb皆抑制管形成,表示為(+)。 圈10針對58P1D12之抗髏介導3T3-58P1D12細胞中之沙 © 泊寧(83卩01*丨11)依賴性殺死作用》第1日將3丁3-58?1〇12細胞 (1000個細胞/孔)接種於96孔盤中。次日,將含有2倍濃度 之指定一級抗體連同2倍過量之與沙泊寧毒素(Advanced Targeting Systems, San Diego, CA)接合之抗人類(Hum_Ha8-4c4.1 (γΐκ), Ha8-6.1 (γ2κ) and Ha8-7.1 (γΐκ). Tumor cell migration was assessed by the Boyden Trangwell chamber migration assay using MDCK/58P1D12 cells. 4 χ 104 of MDCK/58P1D12 cells in 0.1% FBS plus 25 pg/mL control MAb or 58P1D12 MAb were applied to the chamber above the Boyden Transwell device and allowed to migrate 10% of the FBS in the lower chamber. Hours to evaluate the migration. Cells captured on the bottom filter were labeled with calcein AM dye for 30 minutes and photographed. The amount of cellular fluorescence (migration) was quantified by MetaMorph imaging software. Results Table ® shows that Ha8-4c4.1 and Ha8-7.1 MAb inhibit cell migration, while Ha8-6.1 MAb does not inhibit migration. Tumor cell invasion was assessed using a Boyden Transwell chamber coated with a layer of Matrigel® for cell invasion. Briefly, 58P1D12 MAb or isotype matched control MAb (25 pg/mL) was added to 4x104 OVCAR-5/58P1D12 cells in 1·1% FBS in a chamber coated with Matrigel®. These cells were allowed to invade for 10 hours at 10% FBS loaded in the lower chamber. Cells bound to the bottom filter were labeled with calcein AM dye for 30 minutes and photographed. The results showed that 'Ha8-4c4.1 and Ha8-6.1 MAb inhibited tumor cell invasion, while Ha8-7_1 MAb did not inhibit invasion. Circle 8 MAb Ha8-4c4.1 inhibits the formation of the 58P1D12 induced HUVEC tube. Recombinant 58P1D12 ECD (3 pg/mL) was added to HUVEC (5xl〇4/well) in 0.1% FBS with 30 pg/mL isotype matched control MAb or MAb Ha8-4c4.1. The cells were then applied to Matrigel® and allowed to form tubes for 16 hours. Calculate the number of tubes. Control MAb did not affect 142769.doc • 227- 201021828 58P1D12 ECD induced HUVEC tube formation, while MAb Ha8-4c4.1 inhibited tube formation by 50% (*ρ = 0·005). Figure 9 58P1D12 MAb: Comparison of the formation of live HUVEC tubes. Add recombinant 58P1D12 ECD (3 pg/mL) to 30 gg/mL of 58P1D12 MAb Ha8-4c4.1, Ha8_6.1 or Ha8-7.1 to 1111¥£ in 0.1% FBS (:(5>< 104 cells/well. Then the cells were applied to ^^&11^61@ and allowed to form tubes for 16 hours. The number of tubes was calculated. The results showed that all three 58PlD12MAb inhibited tube formation, expressed as (+) Loop 10 for the anti-sputum of 58P1D12 mediates the sand in the 3T3-58P1D12 cells © Bo Ning (83卩01*丨11)-dependent killing effect on the 1st day will be 3-butyl 3-58?1〇12 cells (1000 Cells/wells were seeded in 96-well plates. The next day, a 2-fold concentration of the designated primary antibody was combined with a 2-fold excess of anti-human (Hum_) conjugated to Sabinin toxin (Advanced Targeting Systems, San Diego, CA).
Zap)或抗山羊(Gt Ig Sap)多株抗體的等體積培養基添加至 各孔中。將該等細胞在攝氏37度下培育4天。培育期結束 時,將阿拉馬藍(Alamar Blue)(Biosource)添加至各孔中且 繼續培育額外4小時。在530 rnn下激發之後,測定三份重 G 複樣本在590 nm下之螢光發射。結果表明,Ha8-4c4.1介 導3T3-58P1D12細胞中之沙泊寧依賴性細胞毒性,而對照 物非特異性人類IgGl (H3-1.4.1.2)不起作用。該等結果表 明,使用適當的抗58P1D12 MAb可將藥物或細胞毒性蛋白 質選擇性地傳遞至表現3T3-58P1D12及其他58P1D12表現 細胞。 圈11 Ha8-4c4.1在3T3-58P1D12逋痏中之功效研究。將 142769.doc -228- 201021828 3丁3-5 8卩1〇12細胞(5,0><106個細胞)嵌埋於]^出§61中且在第 0曰植入雄性S CID小鼠之右側腹中。同一日,將小鼠隨機 分組(每組n=10隻)且使用500 mg Ha8_4c4.l或同種型對照 MAb(每週兩次’總共8劑)以腹膜内方式開始治療。每隔3 至4天使用測徑規量測法監測腫瘤生長。 結果證明’第27日’與對照抗體單獨治療相比,Hag_ 4c4.1將SCID小鼠中生長之3T3-58P1D12腫瘤異種移植物之 生長抑制約78%。使用Mann-Whitney U檢驗分析時,對照 ® 腫瘤與Ha8_4c4.i腫瘤之間腫瘤體積的所得差異具有統計 顯著性(p<0.0001)。 圖12 Ha8-4e4.1對生長於小鼠脛骨中之已建立3T3_ 58P1D12贐瘤的功效》將3T3-58P1D12細胞(5.〇xl〇4個細 胞)嵌埋於Matrigel中且在第〇日手術植入雄性SCID小鼠之 右脛骨中。谷許腫瘤建立7天,此時將小鼠隨機分組(每組 n=10隻)。使用I.5 mg負荷劑量之Ha8-4c4.1或同種型對照 眷 MAb、接著使用750 mg之各相應MAb(每週投與兩次,總 共ό劑)以腹膜内方式開始治療。每隔3至4天使用測徑規量 測法監測腫瘤生長。 結果證明’第24日’與使用對照抗體治療之治療相比, Ha8-4c4.1將生長於小鼠脛骨中之已建立3T3_58P1di2腫瘤 異種移植物之生長抑制約63%(<〇.01,使用;Mann-Whitney U檢驗)。 圈13 Ha8-4c4.1對LAPC-AD前列腺邋痏之功效•將 LAPC9-AD腫瘤之儲備液酶促消化,計數且在第〇日將一百 142769.doc •229- 201021828 五十萬個活細胞皮下植入雄性SCID*鼠之右脛骨中。同一 日,將小鼠隨機分組(每組η=1〇隻)且使用5〇〇吨Ha84c4」 或同種型對照人類IgGi以腹膜内方式開始治療。每週兩次 治療動物,總共10劑,直至第32日❶在研究結束時’處死 動物且經由電子天平對右脛骨及左脛骨稱重。藉由將具有 腫瘤之右脛骨之重量減去無腫瘤之對側脛骨之重量來測定 腫瘤重量,將此腫瘤重量繪成曲線圖。 結果證明’第32日’與對照抗體治療相比,Ha8_4c4.丄 將生長於小鼠脛骨中之LAPC9-AD前列腺癌異種移植物之 生長抑制60%。使用學生t檢驗分析時,對照腫瘤重量與 Ha8-4c4.1腫瘤重量之間的所得差異具有統計顯著性 (p=0.0057)。 圈14 Ha8-4c4.1對生長於小鼠脛骨中之卵巢贐瘤之功 效。將表現Ovcar5-58PlD12之腫瘤細胞(2·〇χ106個細胞)植 入雌性SCID小鼠之右脛骨中。次曰,將小鼠隨機分組(每 組η=1〇隻)且使用5〇〇呢Ha8-4c4.l或同種型對照人類IgGl 以腹膜内(i.P.)方式開始治療。每週兩次治療動物,總共12 劑’直至第42曰。研究結束時(第42曰),處死動物且經由 電子天平對右脛骨及左脛骨稱重。腫瘤重量為減去無腫瘤 之對側脛骨之重量之後所獲得的量測值,將腫瘤重量繪成 曲線圖。 結果證明,與對照抗體治療相比,Ha8-4c4.1可以單一 藥劑形式對0vcar5-58PlD12腫瘤有效,使得生長被抑制 56% (p=〇.〇〇〇2,使用 Mann-Whitney U檢驗)。 142769.doc -230- 201021828 圈15 Ha8-4c4.1對具有腹膜内建立之〇vCAR-5-58P1D12 通瘤之SCID小鼠的存活的影響。第〇曰將〇vcar5_58piD12 腫瘤細胞(2·〇χ106個細胞)注入雌性sciD小鼠之腹膜内。當 腫瘤充分建立後第7曰’將小鼠隨機分組(每組η= 15隻)且 使用500 Ha8-4c4.1或同種型對照人類IgG1以腹膜内方 式開始治療。每週兩次用抗體治療動物,只要其存活。每 隔數日監測並記錄小鼠之健康及存活狀況。 結果證明,經Ha8-4c4.1治療的具有充分建立之卵巢腫 瘤之小鼠存活69天之中位值,且經對照MAb治療之小鼠存 活37天之中位值。經Ha8_4c41治療之小鼠之存活天數中 位值增加32天具有統計顯著性(p=0 〇〇66,使用L〇gran]<^ 驗)。 圈16 1138-4〇4.1舆卡始([31*1)〇口丨3^11)组合之功效。在已 建立之不依賴雄激素之前列腺腫瘤異種移植物(lapc:9_ai) 中評估作為單一療法及與化學治療劑卡鉑組合形式之Ha8_ φ 4c4.1之能力。WLAPC9-AI腫瘤之儲備液酶促消化,計數 且在第0日將1.5xlO6個細胞手術植入雄性SCID小鼠之右脛 骨中。容許腫瘤建立7天,此時將動物隨機分成四個不同 組(每組n=l〇隻),如曲線圖中所示。第7日開始,腹膜内 投與負荷劑量(2 mg)之Ha8-4c4.1或同種型對照人類IgG1, 接著投與維持劑量(1.0 mg)之相應MAb , —週兩次,總共7 劑。在第7、U、15、19、22及26日將卡翻(4〇 mg/kg)靜脈 内(i.v·)投與小鼠。第33曰,將全部小鼠處死,且將腫瘤切 除且用電子天平稱重。 142769.doc -231 - 201021828 結果證明,Ha8-4c4.1在單一藥劑形式下非常有效,且 與對照抗體治療相比,抑制腫瘤生長達76% (p=0.0077)。 卡翻單一療法亦抑制腫瘤生長,導致腫瘤生長被抑制87% (p=0.0001 )〇 Ha8_4c4.1與卡鉑組合治療可增,強抑制作用且 與單獨對照抗體相比導致腫瘤生長被抑制97% (p<0.0001)。當將Ha8-4c4.1加卡鉑治療組之腫瘤重量與對 照MAb加卡鉑治療組之腫瘤重量比較時,亦證明統計顯著 性差異(p=〇.〇243)。初始使用Kruskal-Wallis檢驗執行統計 分析以測定各組當中的顯著性。隨後,對各對比較應用學 生t檢驗或Mann-Whitney U檢驗。 142769.doc -232- 201021828 序列表 <110〉美商艾澤西公司 <120〉結合至58P1D12蛋白質之抗體及相關分子 <130> 511582002082 <140〉 098128076 <141> 2009-08-20 <150> 61/207,862 <151〉 2008-08-20 <150> 61/153,225 <151〉 2009-02-17 <160〉 19 <170> FastSEQ for Windows Version 4. 0An equal volume of medium of Zap) or anti-goat (Gt Ig Sap) polyclonal antibody was added to each well. The cells were incubated for 4 days at 37 degrees Celsius. At the end of the incubation period, Alamar Blue (Biosource) was added to each well and incubation continued for an additional 4 hours. After excitation at 530 rnn, the fluorescence emission of three heavy G complex samples at 590 nm was determined. The results showed that Ha8-4c4.1 mediates saporin-dependent cytotoxicity in 3T3-58P1D12 cells, whereas the control non-specific human IgGl (H3-1.4.1.2) did not work. These results indicate that drugs or cytotoxic proteins can be selectively delivered to cells expressing 3T3-58P1D12 and other 58P1D12 expressing cells using an appropriate anti-58P1D12 MAb. Study on the efficacy of circle 11 Ha8-4c4.1 in 3T3-58P1D12逋痏. 142769.doc -228- 201021828 3 3-5 8卩1〇12 cells (5,0><106 cells) were embedded in §61 and the male S CID was implanted at the 0th 小In the right abdomen of the mouse. On the same day, mice were randomized (n=10 per group) and treatment was started intraperitoneally using 500 mg Ha8_4c4.1 or isotype control MAb (twice a week for a total of 8 doses). Tumor growth was monitored using a caliper gauge every 3 to 4 days. As a result, it was confirmed that Hag_4c4.1 inhibited the growth of 3T3-58P1D12 tumor xenografts grown in SCID mice by about 78% as compared with the control antibody alone. The difference in tumor volume between control ® tumors and Ha8_4c4.i tumors was statistically significant (p<0.0001) when analyzed using the Mann-Whitney U test. Figure 12: Effect of Ha8-4e4.1 on established 3T3_58P1D12 tumors grown in mouse tibia. 3T3-58P1D12 cells (5.〇xl〇4 cells) were embedded in Matrigel and operated on the third day. Implanted into the right tibia of male SCID mice. The tumor was established for 7 days, at which time the mice were randomly divided into groups (n=10 per group). Treatment was initiated intraperitoneally using an I.5 mg loading dose of Ha8-4c4.1 or an isotype control 眷 MAb followed by 750 mg of each corresponding MAb (twice per week, total sputum). Tumor growth was monitored using a caliper gauge every 3 to 4 days. The results demonstrated that '24th day' Ha8-4c4.1 inhibited the growth inhibition of established 3T3_58P1di2 tumor xenografts grown in mouse tibia compared to treatment with control antibody (<01.01, Use; Mann-Whitney U test). Circle 13 Ha8-4c4.1 on the efficacy of LAPC-AD prostate • • Enzymatic digestion of LAPC9-AD tumor stock, counting and on the third day will be one hundred 142769.doc • 229- 201021828 500,000 live The cells were implanted subcutaneously into the right tibia of male SCID* mice. On the same day, mice were randomized (n=1 each) and treated with 5 ton of Ha84c4” or isotype control human IgGi in an intraperitoneal manner. Animals were treated twice a week for a total of 10 doses until the end of the study on the 32nd day. The animals were sacrificed and the right tibia and left tibia were weighed via an electronic balance. Tumor weight was determined by subtracting the weight of the tumor-free right tibia from the weight of the contralateral tibia without tumor, and plotting the tumor weight. As a result, it was confirmed that Ha8_4c4.丄 inhibited the growth of LAPC9-AD prostate cancer xenografts grown in the mouse tibia by 60% compared with the control antibody treatment. The difference between the control tumor weight and the Ha8-4c4.1 tumor weight was statistically significant (p=0.0057) when using Student's t-test analysis. Circle 14 Ha8-4c4.1 is effective for ovarian tumors growing in the tibia of mice. Tumor cells (2·〇χ106 cells) expressing Ovcar5-58PlD12 were implanted into the right tibia of female SCID mice. After the sputum, the mice were randomized (n = 1 每 each) and the treatment was initiated intraperitoneally (i.P.) using 5 〇〇 Ha8-4c4.l or isotype control human IgGl. Animals were treated twice a week for a total of 12 doses 'up to 42nd. At the end of the study (p. 42), the animals were sacrificed and the right tibia and left tibia were weighed via an electronic balance. The tumor weight is the measured value obtained after subtracting the weight of the contralateral tibia without the tumor, and the tumor weight is plotted as a graph. The results demonstrated that Ha8-4c4.1 was effective against the 0vcar5-58PlD12 tumor in a single agent form compared to the control antibody treatment, resulting in a 56% inhibition of growth (p=〇.〇〇〇2, using the Mann-Whitney U test). 142769.doc -230- 201021828 The effect of circle 15 Ha8-4c4.1 on the survival of SCID mice with intraperitoneal established vCAR-5-58P1D12 tumors. In the third place, 〇vcar5_58piD12 tumor cells (2·〇χ106 cells) were injected into the peritoneum of female sciD mice. When the tumor was fully established, the mice were randomized into groups (n=15 per group) and treatment was started intraperitoneally using 500 Ha8-4c4.1 or isotype control human IgG1. Animals are treated with antibodies twice a week as long as they survive. The health and survival of the mice were monitored and recorded every few days. The results demonstrated that mice with well established ovarian tumors treated with Ha8-4c4.1 survived a median of 69 days and mice treated with control MAb survived a median of 37 days. The median increase in the number of days of survival in mice treated with Ha8_4c41 was statistically significant (p=0 〇〇66, using L〇gran]<^ test). The effect of the combination of circle 16 1138-4〇4.1舆 card ([31*1)〇口丨3^11). The ability of Ha8_φ 4c4.1 as a monotherapy and in combination with the chemotherapeutic carboplatin was evaluated in an established androgen-independent prostate tumor xenograft (lapc: 9_ai). The stock solution of WLAPC9-AI tumor was enzymatically digested, and 1.5 x 106 cells were surgically implanted into the right tibia of male SCID mice on day 0. The tumors were allowed to establish for 7 days, at which time the animals were randomly divided into four different groups (n=l each for each group) as shown in the graph. Starting on day 7, a loading dose (2 mg) of Ha8-4c4.1 or an isotype control human IgG1 was administered intraperitoneally, followed by a maintenance dose (1.0 mg) of the corresponding MAb, twice weekly for a total of 7 doses. On the 7th, Uth, 15th, 19th, 22nd and 26th, the card (4. mg/kg) was administered intravenously (i.v.) to the mice. On page 33, all mice were sacrificed and the tumors were excised and weighed using an electronic balance. 142769.doc -231 - 201021828 The results demonstrate that Ha8-4c4.1 is very effective in a single agent form and inhibits tumor growth by 76% compared to control antibody treatment (p=0.0077). Cardatic monotherapy also inhibited tumor growth, resulting in inhibition of tumor growth by 87% (p=0.0001). Combination of Ha8_4c4.1 and carboplatin increased, strong inhibition and tumor growth was inhibited by 97% compared with control antibody alone. (p<0.0001). Statistically significant differences were also demonstrated when comparing the tumor weight of the Ha8-4c4.1 plus carboplatin treatment group to the tumor weight of the control MAb plus carboplatin treatment group (p = 〇. 〇 243). Statistical analysis was performed initially using the Kruskal-Wallis test to determine significance in each group. Subsequently, a student t test or a Mann-Whitney U test was applied to each pair. 142769.doc -232- 201021828 Sequence Listing <110>American Azei Company <120> antibody and related molecule that binds to 58P1D12 protein <130> 511582002082 <140> 098128076 <141> 2009-08- 20 <150> 61/207,862 <151> 2008-08-20 <150> 61/153,225 <151> 2009-02-17 <160> 19 <170> FastSEQ for Windows Version 4. 0
<210> 1 <211> 2550 <212〉 DNA <2i3>智人 <220〉<210> 1 <211> 2550 <212> DNA <2i3> Homo sapiens <220>
<221> CDS <222〉 (380)... (1201) <400〉 1 atccaggacc agggcgcacc ggctcagcct ctcacttgtc agaggccggg gaagagaagc 60 aaagcgcaac ggtgtggtcc aagccggggc ttctgcttcg cctctaggac atacacggga 120 ccccctaact tcagtccccc aaacgcgcac cctcgaagtc ttgaactcca gccccgcaca 180 tccacgcgcg gcacaggcgc ggcaggcggc aggtcccggc cgaaggcgat gcgcgcaggg 240 ggtc-gggcag ctgggctcgg gcggcgggag tagggcccgg cagggaggca gggaggctgc 300 agagtcagag tcgcgggctg cgccctgggc agaggccgcc ct-cgctccac gcaacacctg 360 ctgctgccac cgcgccgcg atg age ege gtg gtc teg ctg ctg ctg ggc gee 412 Met Ser Arg Val Val Ser Leu Leu Leu Gly Ala 1 5 10 geg ctg etc tgc ggc cac gga gee ttc tgc ege ege gtg gtc age ggc 460≪ 221 > CDS < 222> (380) ... (1201) < 400> 1 atccaggacc agggcgcacc ggctcagcct ctcacttgtc agaggccggg gaagagaagc 60 aaagcgcaac ggtgtggtcc aagccggggc ttctgcttcg cctctaggac atacacggga 120 ccccctaact tcagtccccc aaacgcgcac cctcgaagtc ttgaactcca gccccgcaca 180 tccacgcgcg gcacaggcgc ggcaggcggc aggtcccggc cgaaggcgat gcgcgcaggg 240 ggtc-gggcag ctgggctcgg gcggcgggag tagggcccgg cagggaggca gggaggctgc 300 agagtcagag tcgcgggctg cgccctgggc agaggccgcc ct-cgctccac gcaacacctg 360 ctgctgccac cgcgccgcg atg age ege gtg gtc teg ctg ctg ctg ggc gee 412 Met Ser Arg Val Val Ser Leu Leu Leu Gly Ala 1 5 10 geg ctg etc Tgc ggc cac gga gee ttc tgc ege ege gtg gtc age ggc 460
Ala Leu Leu Cys Gly His Gly Ala Phe Cvs Arg Arg Val Val Ser Gly 15 20 25 c-aa aa.g gtg tgt ttt get gac ttc aag cat ccc tgc tac aaa atg gee 508Ala Leu Leu Cys Gly His Gly Ala Phe Cvs Arg Arg Val Val Ser Gly 15 20 25 c-aa aa.g gtg tgt ttt get gac ttc aag cat ccc tgc tac aaa atg gee 508
Gin Lys Val Cys Phe Ala Asp Phe Lys His Pro Cys Tvr Lys Met Ala 30 35 40Gin Lys Val Cys Phe Ala Asp Phe Lys His Pro Cys Tvr Lys Met Ala 30 35 40
tac ttc cat gaa ctg tee age ega gtg age ttt cag gag gca ege ctg 556Tac ttc cat gaa ctg tee age ega gtg age ttt cag gag gca ege ctg 556
Tyr Phe His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala Arg Leu 45 50 55 get tgt gag agt gag gga gga gtc etc etc age ett gag aat. gaa gca 604Tyr Phe His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala Arg Leu 45 50 55 get tgt gag agt gag gga gga gtc etc etc age ett gag aat. gaa gca 604
Ala Cvs Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn Glu Ala 60 65 70 75 gaa cag aag tta ata gag age atg ttg caa aac ctg aca aaa ccc ggg 652Ala Cvs Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn Glu Ala 60 65 70 75 gaa cag aag tta ata gag age atg ttg caa aac ctg aca aaa ccc ggg 652
Glu Gin Lys Leu lie Glu Ser Met Leu Gin Asu Leu Tlir Lys Pro Gly 80 85 90 aca ggg att tet gat ggt gat ttc tgg ata ggg ett tgg agg aat gga 700Glu Gin Lys Leu lie Glu Ser Met Leu Gin Asu Leu Tlir Lys Pro Gly 80 85 90 aca ggg att tet gat ggt gat ttc tgg ata ggg ett tgg agg aat gga 700
Thr Gly lie Ser Asp Gly Asp Phe Trp He Glv Leu Trp Arg Asn Gly 95 100 ^ 105 gat ggg caa aca tet ggt gee tgc cca gat etc tac cag tgg tet gat 748Thr Gly lie Ser Asp Gly Asp Phe Trp He Glv Leu Trp Arg Asn Gly 95 100 ^ 105 gat ggg caa aca tet ggt gee tgc cca gat etc tac cag tgg tet gat 748
Asp Gly Gin Thr Ser Gly Ala Cvs Pro Asp Leu Tyr Gin Trp Ser Asp 110 115 120 142769-序列表.doc 201021828 gga age aat tee cag tac ega aac tgg tac aca gat gaa cct tee *tgc 796Asp Gly Gin Thr Ser Gly Ala Cvs Pro Asp Leu Tyr Gin Trp Ser Asp 110 115 120 142769 - Sequence Listing.doc 201021828 gga age aat tee cag tac ega aac tgg tac aca gat gaa cct tee *tgc 796
Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro Ser Cys 125 130 135 gga agt gaa aag tgt gtt gtg atg tat cac caa cca act gee aat c:ct 844Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro Ser Cys 125 130 135 gga agt gaa aag tgt gtt gtg atg tat cac caa cca act gee aat c:ct 844
Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala Asn Pro 140 145 150 155 ggc ett ggg ggt ecc tac ett tac cag tgg aat gat gac agg tgt aac 892Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala Asn Pro 140 145 150 155 ggc ett ggg ggt ecc tac ett tac cag tgg aat gat gac agg tgt aac 892
Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg Cys Asn 160 165 170 atg aag cac aat tat att tgc aag tat gaa cca gag att aat cca aca 940Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg Cys Asn 160 165 170 atg aag cac aat tat att tgc aag tat gaa cca gag att aat cca aca 940
Met Lys His Asn Tyr lie Cys Lys Tyr Glu Pro Glu He Asn Pro Thr 175 180 185 gee cct gta gaa aag cct tat ett aca aat caa cca gga gac acc cat 988Met Lys His As Tyr lie Cys Lys Tyr Glu Pro Glu He As Pro Pro 175 180 185 gee cct gta gaa aag cct tat ett aca aat caa cca gga gac acc cat 988
Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp Thr His 190 195 200 cag aat gtg gtt gtt act gaa gca ggt ata att ccc aat eta att tat 1036Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp Thr His 190 195 200 cag aat gtg gtt gtt act gaa gca ggt ata att ccc aat eta att tat 1036
Gin Asn Val Val Val Thr Glu Ala Gly lie lie Pro Asn Leu lie Tyr 205 210 215 gtt gtt ata cca aca ata ccc ctg etc tta ctg ata ctg gtt get t:tt 1084Gin Asn Val Val Val Thr Glu Ala Gly lie lie Pro Asn Leu lie Tyr 205 210 215 gtt gtt ata cca aca ata ccc ctg etc tta ctg ata ctg gtt get t:tt 1084
Val Val lie Pro Thr lie Pro Leu Leu Leu Leu lie Leu Val Ala Phe 220 225 230 2 35 gga acc tgt tgt ttc cag atg ctg cat aaa agt aaa gga aga aca aaa 1132Val Val lie Pro Thr lie Pro Leu Leu Leu Leu lie Leu Val Ala Phe 220 225 230 2 35 gga acc tgt tgt ttc cag atg ctg cat aaa agt aaa gga aga aca aaa 1132
Gly Thr Cys Cys Phe Gin Met Leu His Lys Ser Lys Gly Arg Thr Lys 240 245 250 act agt cca aac cag tet aca ctg tgg att tea aag agt acc aga a.aa 1180Gly Thr Cys Cys Phe Gin Met Leu His Lys Ser Lys Gly Arg Thr Lys 240 245 250 act agt cca aac cag tet aca ctg tgg att tea aag agt acc aga a.aa 1180
Thr Ser Pro Asn Gin Ser Thr Leu Trp lie Ser Lys Ser Thr Arg Lys 255 260 265 gaa agt ggc atg gaa gta taa taactcattg acttggttcc agaattttgt 1231Thr Ser Pro Asn Gin Ser Thr Leu Trp lie Ser Lys Ser Thr Arg Lys 255 260 265 gaa agt ggc atg gaa gta taa taactcattg acttggttcc agaattttgt 1231
Glu Ser Gly Met Glu Val * 270 aattctggat ctgtataagg aatggcatca gaacaatagc ttggaatggc ttgaaatcac 1291 aaaggatctg caagatgaac tgtaagctcc cccttgaggc aaatattaaa gtaattttta 1351 tatgtetatt atttcattta aagaatatgc tgtgctaata atggagtgag acatgcttat 1411 tttgctaaag gatgcaccca aacttcaaac ttcaagcaaa tgaaatggac aatgeagata 1471 aagttgttat caacacgtcg ggagtatgtg tgttagaagc aattcctttt atttctttca 1531 cctttcataa gttgttatct agtcaatgta atgtatattg tattgaaatt tacagtgtgc 1591 aaaagtattt tacctttgca taagtgtttg ataaaaatga actgttctaa tattta.tttt 1651 tatggeatet catttttcaa tacatgctct tttgattaaa gaaacttatt actgtt:gtca 1711 actgaattca cacacacaca aatatagtac catagaaaaa gtttgttttc tcgaaataat 1771 teatetttea gcttctctgc ttttggtcaa tgtctaggaa atctcttcag aaataagaag 1831 ctatttcatt aagtgtgata taaacctcct caaacatttt aettagagge aagga*ttgtc 1891 taatttcaat tgtgcaagac atgtgcctta taattatttt tagcttaaaa ttaaaoagat 1951 tttgtaataa tgtaactttg ttaataggtg cataaacact aatgeagtea atttgaacaa 2011 aagaagtgac atacacaata taaatcatat gtcttcacac gttgcctata taatgageiag 2071 cagctctctg agggttctga aatcaatgtg gtccctctct tgcccactaa acaaagatgg 2131 ttgttcgggg tttgggattg acactggagg cagatagttg caaagttagt ctaaggtttc 2191 cctagctgta tttagcctct gactatatta gtatacaaag aggtcatgtg gttgagacca 2251 ggtgaatagt cactatcagt gtggagacaa gcacagcaca cagacatttt aggaaggaaa 2311 ggaactacga aatcgtgtga aaatgggttg gaacccatca gtgatcgcat attcat:tgat 2371 gagggtttgc ttgagataga aaatggtggc tcctttctgt cttatctcct agtttcttca 2431 atgettaege cttgttcttc tcaagagaaa gttgtaactc tctggtcttc atatg*tccct 2491 gtgctccttt taaccaaata aagagttctt gtttctgaag aaaaaaaaaa aaaaaaaaa 2550 <210〉 2 <211〉 273 <212> PRT <213〉智人 <400〉 2Glu Ser Gly Met Glu Val * 270 aattctggat ctgtataagg aatggcatca gaacaatagc ttggaatggc ttgaaatcac 1291 aaaggatctg caagatgaac tgtaagctcc cccttgaggc aaatattaaa gtaattttta 1351 tatgtetatt atttcattta aagaatatgc tgtgctaata atggagtgag acatgcttat 1411 tttgctaaag gatgcaccca aacttcaaac ttcaagcaaa tgaaatggac aatgeagata 1471 aagttgttat caacacgtcg ggagtatgtg tgttagaagc aattcctttt atttctttca 1531 cctttcataa gttgttatct agtcaatgta atgtatattg tattgaaatt tacagtgtgc 1591 aaaagtattt tacctttgca taagtgtttg ataaaaatga actgttctaa tattta.tttt 1651 tatggeatet catttttcaa tacatgctct tttgattaaa gaaacttatt actgtt: gtca 1711 actgaattca cacacacaca aatatagtac catagaaaaa gtttgttttc tcgaaataat 1771 teatetttea gcttctctgc ttttggtcaa tgtctaggaa atctcttcag aaataagaag 1831 ctatttcatt aagtgtgata taaacctcct caaacatttt aettagagge aagga * ttgtc 1891 taatttcaat tgtgcaagac atgtgcctta taattatttt tagcttaaaa ttaaaoagat 1951 tttgtaataa tgtaactttg Tatataggg cataaacact aatgeagtea atttgaacaa 2011 aagaagtgac atacacaata taaatcatat gtcttcacac gttgcctata taatgageiag 2071 cagctctctg agggttctga aatcaatgtg gtccctctct tgcccactaa acaaagatgg 2131 ttgttcgggg tttgggattg acactggagg cagatagttg caaagttagt ctaaggtttc 2191 cctagctgta tttagcctct gactatatta gtatacaaag aggtcatgtg gttgagacca 2251 ggtgaatagt cactatcagt gtggagacaa gcacagcaca cagacatttt aggaaggaaa 2311 ggaactacga aatcgtgtga aaatgggttg gaacccatca gtgatcgcat attcat: tgat 2371 gagggtttgc ttgagataga aaatggtggc tcctttctgt cttatctcct agtttcttca 2431 atgettaege cttgttcttc tcaagagaaa Gttgtaactc tctggtcttc atatg*tccct 2491 gtgctccttt taaccaaata aagagttctt gtttctgaag aaaaaaaaaa aaaaaaaaa 2550 <210〉 2 <211> 273 <212> PRT <213> Homo sapiens <400〉 2
Met Ser Arg Val Val Ser Leu Leu Leu Gly Ala Ala Leu Leu Cys Gly 15 10 15Met Ser Arg Val Val Ser Leu Leu Leu Gly Ala Ala Leu Leu Cys Gly 15 10 15
His Gly Ala Phe Cys Arg Arg Val Val Ser Gly Gin Lys Val Cys Phe 20 25 30His Gly Ala Phe Cys Arg Arg Val Val Ser Gly Gin Lys Val Cys Phe 20 25 30
Ala Asp Phe Lys His Pro Cys Tyr Lys Met Ala Tyr Phe His Glu Leu •2· 142769·序列表.doc 201021828 35 40 45Ala Asp Phe Lys His Pro Cys Tyr Lys Met Ala Tyr Phe His Glu Leu • 2· 142769· Sequence Listing.doc 201021828 35 40 45
Ser Ser Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys Glu Ser Glu 50 55 60Ser Ser Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys Glu Ser Glu 50 55 60
Gly Gly Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin Lys Leu lie 65 70 75 80Gly Gly Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin Lys Leu lie 65 70 75 80
Glu Ser Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly lie Ser Asp 85 90 95Glu Ser Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly lie Ser Asp 85 90 95
Gly Asp Phe Trp lie Gly Leu Trp Arg Asn Gly Asp Gly Gin Thr Ser 100 105 110Gly Asp Phe Trp lie Gly Leu Trp Arg Asn Gly Asp Gly Gin Thr Ser 100 105 110
Gly Ala Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser Asn Ser Gin 115 120 125Gly Ala Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser Asn Ser Gin 115 120 125
Tyr Arg Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser Glu Lys Cys 130 135 140Tyr Arg Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser Glu Lys Cys 130 135 140
Val Val Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu Gly Gly Pro 145 150 155 160Val Val Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu Gly Gly Pro 145 150 155 160
Tyr Leu Tyr Gin Trp Asn Asp Asp Arg Cys Asn Met Lys His Asn Tyr 165 170 175 lie Cys Lys Tyr Glu Pro Glu lie Asn Pro Thr Ala Pro Val Glu Lys 180 185 190Tyr Leu Tyr Gin Trp Asn Asp Asp Arg Cys Asn Met Lys His Asn Tyr 165 170 175 lie Cys Lys Tyr Glu Pro Glu lie Asn Pro Thr Ala Pro Val Glu Lys 180 185 190
Pro Tyr Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn Val Val Val 195 200 205Pro Tyr Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn Val Val Val 195 200 205
Thr Glu Ala Gly lie lie Pro Asn Leu lie Tyr Val Val lie Pro Thr 210 215 220 lie Pro Leu Leu Leu Leu lie Leu Val Ala Phe Gly Thr Cys Cys Phe 225 230 235 240Thr Glu Ala Gly lie lie Pro Asn Leu lie Tyr Val Val lie Pro Thr 210 215 220 lie Pro Leu Leu Leu Leu lie Leu Val Ala Phe Gly Thr Cys Cys Phe 225 230 235 240
Gin Met Leu His Lys Ser Lys Gly Arg Thr Lys Thr Ser Pro Asn Gin 245 250 255Gin Met Leu His Lys Ser Lys Gly Arg Thr Lys Thr Ser Pro Asn Gin 245 250 255
Ser Thr Leu Trp lie Ser Lys Ser Thr Arg Lys Glu Ser Gly Met Glu 260 265 270Ser Thr Leu Trp lie Ser Lys Ser Thr Arg Lys Glu Ser Gly Met Glu 260 265 270
Val <210〉 3 <211〉 2418 <212〉 DNA <213〉智人 <220〉Val <210> 3 <211> 2418 <212> DNA <213> Homo sapiens <220〉
<221〉 CDS <222〉(388)... (1086) <400〉 3<221> CDS <222>(388)... (1086) <400〉 3
ctgtggtgtt tttcccccgc tcctctggct gccttcctga tggatctctg tggtcccagg 60 caggaatggc ctgcttgggg acccagcgag ctcccaaggc ctttcctgct gcttcctcta 120 tccctgtgtt ttgcttggct ctctaaattg actcagctcc aggacatcag gaccccaggt 180 tctctggtct tgggactctg agacttgcac caggaatcct gcccaggctc tcaggccttt 240 ggactcagac tgagctactt cactggcttt cctggttctc cagcttgaag atggcagatc 300 gtgggacttc tcagcctcca taattgagtg agccaattcc ctggccaaaa ggtgtgtttt 360 gctgacttca agcatccctg ctacaaa atg gcc tac ttc cat gaa ctg tcc age 414ctgtggtgtt tttcccccgc tcctctggct gccttcctga tggatctctg tggtcccagg 60 caggaatggc ctgcttgggg acccagcgag ctcccaaggc ctttcctgct gcttcctcta 120 tccctgtgtt ttgcttggct ctctaaattg actcagctcc aggacatcag gaccccaggt 180 tctctggtct tgggactctg agacttgcac caggaatcct gcccaggctc tcaggccttt 240 ggactcagac tgagctactt cactggcttt cctggttctc cagcttgaag atggcagatc 300 gtgggacttc tcagcctcca taattgagtg agccaattcc ctggccaaaa ggtgtgtttt 360 gctgacttca agcatccctg ctacaaa atg gcc tac ttc cat Gaa ctg tcc age 414
Met Ala Tyr Phe His Glu Leu Ser Ser ega gtg age ttt cag gag gca ege ctg get tgt gag agt gag gga gga 462Met Ala Tyr Phe His Glu Leu Ser Ser ega gtg age ttt cag gag gca ege ctg get tgt gag agt gag gga gga 462
Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys Glu Ser Glu Gly Gly 10 15 20 25 gtc etc etc age ett gag aat gaa gca gaa cag aag tta ata gag age 510Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys Glu Ser Glu Gly Gly 10 15 20 25 gtc etc etc age ett gag aat gaa gca gaa cag aag tta ata gag age 510
Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin Lys Leu lie Glu Ser 30 35 40 atg ttg caa aac ctg aca aaa ccc ggg aca ggg att tet gat ggt gat 558Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin Lys Leu lie Glu Ser 30 35 40 atg ttg caa aac ctg aca aaa ccc ggg aca ggg att tet gat ggt gat 558
Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly lie Ser Asp Gly Asp 45 50 55 ttc tgg ata ggg ett tgg agg aat gga gat ggg caa aca tet ggt gcc 606Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly lie Ser Asp Gly Asp 45 50 55 ttc tgg ata ggg ett tgg agg aat gga gat ggg caa aca tet ggt gcc 606
Phe Trp lie Gly Leu Trp Arg Asn Gly Asp Gly Gin Thr Ser Gly Ala 60 65 70 tgc cca gat etc tac cag tgg tet gat gga age aat tcc cag tac ega 654Phe Trp lie Gly Leu Trp Arg Asn Gly Asp Gly Gin Thr Ser Gly Ala 60 65 70 tgc cca gat etc tac cag tgg tet gat gga age aat tcc cag tac ega 654
Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser Asn Ser Gin Tyr Arg 75 80 85 aac tgg tac aca gat gaa cct tcc tgc gga agt gaa aag tgt gtt gtg 702Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser Asn Ser Gin Tyr Arg 75 80 85 aac tgg tac aca gat gaa cct tcc tgc gga agt gaa aag tgt gtt gtg 702
Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser Glu Lys Cys Val Val 142769·序列表.doc 201021828 90 95 ΙΟΟ 105 atg tat cac caa cca act gcc aat cct ggc ct匕 ggg ggt ccc tac ctt 750Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser Glu Lys Cys Val Val 142769 · Sequence Listing.doc 201021828 90 95 ΙΟΟ 105 atg tat cac caa cca act gcc aat cct ggc ct匕 ggg ggt ccc tac ctt 750
Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu. Gly Gly Pro Tyr Leu 110 115 120 tac cag tgg aat gat gac agg tgt aac atg aa^ cac aat tat att tgc 798Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu. Gly Gly Pro Tyr Leu 110 115 120 tac cag tgg aat gat gac agg tgt aac atg aa^ cac aat tat att tgc 798
Tyr Gin Trp Asn Asp Asp Arg Cys Asn Met Lys His Asn Tyr lie Cys 125 130 135 aag tat gaa cca gag att aat cca aca gcc cct gta gaa aag cct tat 846Tyr Gin Trp Asn Asp Asp Arg Cys Asn Met Lys His Asn Tyr lie Cys 125 130 135 aag tat gaa cca gag att aat cca aca gcc cct gta gaa aag cct tat 846
Lys Tyr Glu Pro Glu lie Asn Pro Thr Ala Pro Val Glu Lys Pro Tyr 140 145 150 ctt aca aat caa cca gga gac acc cat cag aat gtg gtt gtt act gaa 894Lys Tyr Glu Pro Glu lie Asn Pro Thr Ala Pro Val Glu Lys Pro Tyr 140 145 150 ctt aca aat caa cca gga gac acc cat cag aat gtg gtt gtt act gaa 894
Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn. Val Val Val Thr Glu 155 160 165 gca ggt ata att ccc aat eta att tat gtt gtt ata cca aca ata ccc 942Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn. Val Val Val Thr Glu 155 160 165 gca ggt ata att ccc aat eta att tat gtt gtt ata cca aca ata ccc 942
Ala Gly lie lie Pro Asn Leu lie Tyr Val VaL lie Pro Thr lie Pro 170 175 180 185 ctg etc tta ctg ata ctg gtt get ttt gga acc tgt tgt ttc cag atg 990Ala Gly lie lie Pro Asn Leu lie Tyr Val VaL lie Pro Thr lie Pro 170 175 180 185 ctg etc tta ctg ata ctg gtt get ttt gga acc tgt tgt ttc cag atg 990
Leu Leu Leu Leu lie Leu Val Ala Phe Gly Thr- Cys Cys Phe Gin Met 190 195 200 ctg cat aaa agt aaa gga aga aca aaa act agt, cca aac cag tet aca 1038Leu Leu Leu Leu lie Leu Val Ala Phe Gly Thr- Cys Cys Phe Gin Met 190 195 200 ctg cat aaa agt aaa gga aga aca aaa act agt, cca aac cag tet aca 1038
Leu His Lys Ser Lys Gly Arg Thr Lys Thr Ser- Pro Asn Gin Ser Thr 205 210 215 ctg tgg att tea aag agt acc aga aaa gaa agfc ggc atg gaa gta taa 1086Leu His Lys Ser Lys Gly Arg Thr Lys Thr Ser- Pro Asn Gin Ser Thr 205 210 215 ctg tgg att tea aag agt acc aga aaa gaa agfc ggc atg gaa gta taa 1086
Leu Trp lie Ser Lys Ser Thr Arg Lys Glu Ser* Gly Met Glu Val * 220 225 230 taactcattg acttggttcc agaattttgt aattctggat ctgtataagg eLatggcatca 1146 gaacaatagc ttggaatggc ttgaaatcac aaaggatctg caagatgaac tgtaagctcc 1206 cccttgaggc aaatattaaa gtaattttta tatgtetatt atttcattta aagaatatgc 1266 tgtgctaata atggagtgag acatgcttat tttgctaaag gatgcaccca aacttcaaac 1326 ttcaagcaaa tgaaatggac aatgeagata aagttgttats caacacgtcg ggagtatgtg 1386 tgttagaagc aattcctttt atttctttca cctttcataa, gttgttatct agtcaatgta 1446 atgtatattg tattgaaatt tacagtgtgc aaaagtattt tacctttgca taagtgtttg 1506 ataaaaatga actgttctaa tatttatttt tatggeatet: catttttcaa tacatgctct 1566 tttgattaaa gaaacttatt actgttgtca actgaattcaL cacacacaca aatatagtac 1626 catagaaaaa gtttgttttc tcgaaataat tcatctttcaL gcttctctgc ttttggtcaa 1686 tgtctaggaa atctcttcag aaataagaag ctatttcatt aagtgtgata taaacctcct 1746 caaacatttt aettagagge aaggattgtc taatttcaat: tgtgcaagac atgtgcctta 1806 taattatttt tagcttaaaa tta£Lacagat tttgtaataa- tgtaactttg ttaataggtg 1866 cataaacact aatgeagtea atttgaacaa aagaagtga& atacacaata taaatcatat 1926 gtcttcacac gttgcctata taatgagaag cagctctctg agggttctga aatcaatgtg 1986 gtccctctct tgcccactaa acaaagatgg ttgttcgggg: tttgggattg acactggagg 2046 cagatagttg caaagttagt ctaaggtttc cctagctgta. tttagcctct gactatatta 2106 gtatacaaag aggtcatgtg gttgagacca ggtgaatagt: cactatcagt gtggagacaa 2166 gcacagcaca cagacatttt aggaaggaaa ggaactacga, aatcgtgtga aaatgggttg 2226 gaacccatca gtgatcgcat attcattgat gagggtttgc: ttgagataga aaatggtggc 2286 tcctttctgt cttatctcct agtttcttca atgettaege- cttgttcttc tcaagagaaa 2346 gttgtaactc tctggtcttc atatgtccct gtgctccttt taaccaaata aagagttctt 2406 gtttctgaag aa 2418 <210> 4 <211〉 232 <212> PRT <213〉智人 <400> 4Leu Trp lie Ser Lys Ser Thr Arg Lys Glu Ser * Gly Met Glu Val * 220 225 230 taactcattg acttggttcc agaattttgt aattctggat ctgtataagg eLatggcatca 1146 gaacaatagc ttggaatggc ttgaaatcac aaaggatctg caagatgaac tgtaagctcc 1206 gatgcaccca aacttcaaac 1326 cccttgaggc aaatattaaa gtaattttta tatgtetatt atttcattta aagaatatgc 1266 tgtgctaata atggagtgag acatgcttat tttgctaaag ttcaagcaaa tgaaatggac aatgeagata aagttgttats caacacgtcg ggagtatgtg 1386 tgttagaagc aattcctttt atttctttca cctttcataa, gttgttatct agtcaatgta 1446 atgtatattg tattgaaatt tacagtgtgc aaaagtattt tacctttgca taagtgtttg 1506 ataaaaatga actgttctaa tatttatttt tatggeatet: catttttcaa tacatgctct 1566 tttgattaaa gaaacttatt actgttgtca actgaattcaL cacacacaca aatatagtac 1626 catagaaaaa gtttgttttc tcgaaataat tcatctttcaL gcttctctgc ttttggtcaa 1686 tgtctaggaa atctcttcag aaataagaag ctatttcatt aagtgtgata taaacctcct 1746 caaacatttt Aettagagge aaggattgtc taatttcaat: tgtgcaagac atgtgcctta 1806 taattatttt tagcttaaaa tta£Lacagat tttgtaataa- tgtaactttg ttaatagg tg 1866 cataaacact aatgeagtea atttgaacaa aagaagtga & atacacaata taaatcatat 1926 gtcttcacac gttgcctata taatgagaag cagctctctg agggttctga aatcaatgtg 1986 gtccctctct tgcccactaa acaaagatgg ttgttcgggg:. tttgggattg acactggagg 2046 cagatagttg caaagttagt ctaaggtttc cctagctgta tttagcctct gactatatta 2106 gtatacaaag aggtcatgtg gttgagacca ggtgaatagt: cactatcagt gtggagacaa 2166 gcacagcaca cagacatttt aggaaggaaa ggaactacga, aatcgtgtga aaatgggttg 2226 gaacccatca gtgatcgcat attcattgat gagggtttgc: ttgagataga aaatggtggc 2286 tcctttctgt cttatctcct agtttcttca atgettaege- cttgttcttc tcaagagaaa 2346 gttgtaactc tctggtcttc atatgtccct gtgctccttt taaccaaata aagagttctt 2406 gtttctgaag aa 2418 < 210 > 4 < 211> 232 < 212 > PRT < 213> Homo sapiens < 400 > 4
Met Ala Tyr Phe His Glu Leu Ser Ser Arg VaL Ser Phe Gin Glu Ala 1 5 10 15Met Ala Tyr Phe His Glu Leu Ser Ser Arg VaL Ser Phe Gin Glu Ala 1 5 10 15
Arg Leu Ala Cys Glu Ser Glu Gly Gly Val Lem Leu Ser Leu Glu Asn 20 25 30Arg Leu Ala Cys Glu Ser Glu Gly Gly Val Lem Leu Ser Leu Glu Asn 20 25 30
Glu Ala Glu Gin Lys Leu lie Glu Ser Met Lett Gin Asn Leu Thr Lys 35 40 45Glu Ala Glu Gin Lys Leu lie Glu Ser Met Lett Gin Asn Leu Thr Lys 35 40 45
Pro Gly Thr Gly lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg 50 55 60Pro Gly Thr Gly lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg 50 55 60
Asn Gly Asp Gly Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp 65 70 75 80Asn Gly Asp Gly Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp 65 70 75 80
Ser Asp Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro -4- 142769·序列表.doc 201021828 85 90 95Ser Asp Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro -4- 142769 · Sequence Listing.doc 201021828 85 90 95
Ser Cys Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala 100 105 110Ser Cys Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala 100 105 110
Asn Pro Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg 115 120 125Asn Pro Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg 115 120 125
Cys Asn Met Lys His Asn Tyr lie Cys Lys Tyr Glu Pro Glu lie Asn 130 135 140Cys Asn Met Lys His As Tyr lie Cys Lys Tyr Glu Pro Glu lie Asn 130 135 140
Pro Thr Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp 145 150 155 160Pro Thr Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp 145 150 155 160
Thi" His Gin Asn Val Val Val Thr Glu Ala Gly lie lie Pro Asn Leu 165 170 175 lie Tyr Val Val lie Pro Thr lie Pro Leu Leu Leu Leu lie Leu Val 180 185 190Thi" His Gin Asn Val Val Val Thr Glu Ala Gly lie lie Pro Asn Leu 165 170 175 lie Tyr Val Val lie Pro Thr lie Pro Leu Leu Leu Leu lie Leu Val 180 185 190
Ala Phe Gly Thr Cys Cys Phe Gin Met Leu His Lys Ser Lys Gly Arg 195 200 205Ala Phe Gly Thr Cys Cys Phe Gin Met Leu His Lys Ser Lys Gly Arg 195 200 205
Thr Lys Thr Ser Pro Asn Gin Ser Thr Leu Trp lie Ser Lys Ser Thr 210 215 220Thr Lys Thr Ser Pro Asn Gin Ser Thr Leu Trp lie Ser Lys Ser Thr 210 215 220
Arg Lys Glu Ser Gly Met Glu Val 225 230 <210> 5 <211〉 2236 <212〉 DNA <213〉智人Arg Lys Glu Ser Gly Met Glu Val 225 230 <210> 5 <211> 2236 <212> DNA <213> Homo sapiens
<221〉 CDS <222〉(206)·.. (904) <400〉 5 gcttgaagat ggcagatcgt gggacttctc agcctccata attgagtgag ccaattccct 60 gaatacaaca agaagatggc catctgtaga ccaggaggtg gtccctcccc agaaactgga 120 tgggccagca cgttgattct gagcttctag cctccagaac tgccaaaagg tgtgttttgc 180 tgacttcaag catccctgct acaaa atg gcc tac ttc cat gaa ctg tcc age 232≪ 221> CDS < 222> (206) · .. (904) < 400> 5 gcttgaagat ggcagatcgt gggacttctc agcctccata attgagtgag ccaattccct 60 gaatacaaca agaagatggc catctgtaga ccaggaggtg gtccctcccc agaaactgga 120 tgggccagca cgttgattct gagcttctag cctccagaac tgccaaaagg tgtgttttgc 180 tgacttcaag catccctgct acaaa atg gcc tac Ttc cat gaa ctg tcc age 232
Met Ala Tyr Phe His Glu Leu Ser Ser ega gtg age ttt cag gag gca ege ctg get tgt gag agt gag gga gga 280Met Ala Tyr Phe His Glu Leu Ser Ser ega gtg age ttt cag gag gca ege ctg get tgt gag agt gag gga gga 280
Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys Glu Ser Glu Gly Gly 10 15 20 25 gtc etc etc age ett gag aat gaa gca gaa cag aag tta ata gag age 328Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys Glu Ser Glu Gly Gly 10 15 20 25 gtc etc etc age ett gag aat gaa gca gaa cag aag tta ata gag age 328
Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin Lys Leu lie Glu Ser 30 35 40 atg ttg caa aac ctg aca aaa ccc ggg aca ggg att tet gat ggt gat 376Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin Lys Leu lie Glu Ser 30 35 40 atg ttg caa aac ctg aca aaa ccc ggg aca ggg att tet gat ggt gat 376
Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly lie Ser Asp Gly Asp 45 50 55 ttc tgg ata ggg ett tgg agg aat gga gat ggg caa aca tet ggt gcc 424Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly lie Ser Asp Gly Asp 45 50 55 ttc tgg ata ggg ett tgg agg aat gga gat ggg caa aca tet ggt gcc 424
Phe Trp lie Gly Leu Trp Arg Asn Gly Asp Gly Gin Thr Ser Gly Ala 60 65 70 tgc cca gat etc tac cag tgg tet gat gga age aat tcc cag tac ega 472Phe Trp lie Gly Leu Trp Arg Asn Gly Asp Gly Gin Thr Ser Gly Ala 60 65 70 tgc cca gat etc tac cag tgg tet gat gga age aat tcc cag tac ega 472
Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser Asn Ser Gin Tyr Arg 75 80 85 aac tgg tac aca gat gaa cct tcc tgc gga agt gaa aag tgt gtt gtg 520Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser Asn Ser Gin Tyr Arg 75 80 85 aac tgg tac aca gat gaa cct tcc tgc gga agt gaa aag tgt gtt gtg 520
Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser Glu Lys Cys Val Val 90 95 100 105 atg tat cac caa cca act gcc aat cct ggc ett ggg ggt ccc tac ett 568Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser Glu Lys Cys Val Val 90 95 100 105 atg tat cac caa cca act gcc aat cct ggc ett ggg ggt ccc tac ett 568
Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu Gly Gly Pro Tyr Leu 110 115 120 tac cag tgg aat gat gac agg tgt aac atg aag cac aat tat att tgc 616Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu Gly Gly Pro Tyr Leu 110 115 120 tac cag tgg aat gat gac agg tgt aac atg aag cac aat tat att tgc 616
Tyr Gin Trp Asn Asp Asp Arg Cys Asn Met Lys His Asn Tyr lie Cys 125 130 135 aag tat gaa cca gag att aat cca aca gcc cct gta gaa aag cct tat 664Tyr Gin Trp Asn Asp Asp Arg Cys Asn Met Lys His Asn Tyr lie Cys 125 130 135 aag tat gaa cca gag att aat cca aca gcc cct gta gaa aag cct tat 664
Lys Tyr Glu Pro Glu lie Asn Pro Thr Ala Pro Val Glu Lys Pro Tyr 140 145 150 ett aca aat caa cca gga gac acc cat cag aat gtg gtt gtt act gaa 712 142769·序列表.doc 201021828Lys Tyr Glu Pro Glu lie Asn Pro Thr Ala Pro Val Glu Lys Pro Tyr 140 145 150 ett aca aat caa cca gga gac acc cat cag aat gtg gtt gtt act gaa 712 142769 · Sequence Listing.doc 201021828
Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn Val Val Val Thr Glu 155 160 165 gca ggt ata att ccc aat eta att tat gtt gtt ata cca aca ata ccc 760Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn Val Val Val Thr Glu 155 160 165 gca ggt ata att ccc aat eta att tat gtt gtt ata cca aca ata ccc 760
Ala Gly lie lie Pro Asn Leu lie Tyr Val Val lie Pro Thr lie Pro 170 175 180 185 ctg etc tta ctg ata ctg gtt get ttt gga acc tgt tgt ttc cag atg 808Ala Gly lie lie Pro Asn Leu lie Tyr Val Val lie Pro Thr lie Pro 170 175 180 185 ctg etc tta ctg ata ctg gtt get ttt gga acc tgt tgt ttc cag atg 808
Leu Leu Leu Leu lie Leu Val Ala Phe Gly Thr Cys Cys Phe Gin Met 190 195 200 ctg cat aaa agt aaa gga aga aca aaa act agt cca aac cag tet aca 856Leu Leu Leu Leu lie Leu Val Ala Phe Gly Thr Cys Cys Phe Gin Met 190 195 200 ctg cat aaa agt aaa gga aga aca aaa act agt cca aac cag tet aca 856
Leu His Lys Ser Lys Gly Arg Thr Lys Thr Ser Pro Asn Gin Ser Thr 205 210 215 ctg tgg att tea aag agt acc aga aaa gaa agt ggc atg gaa gta taa 904Leu His Lys Ser Lys Gly Arg Thr Lys Thr Ser Pro Asn Gin Ser Thr 205 210 215 ctg tgg att tea aag agt acc aga aaa gaa agt ggc atg gaa gta taa 904
Leu Trp He Ser Lys Ser Thr Arg Lys Glu Ser Gly Met Glu Val * 220 225 230 taactcattg acttggttcc agaattttgt aattctggat ctgtataagg aatggcatca 964 gaacaatagc ttggaatggc ttgaaatcac aaaggatctg caagatgaac tgtaagctcc 1024 cccttgaggc aaatattaaa gtaattttta tatgtetatt atttcattta aagaatatgc 1084 tgtgctaata atggagtgag acatgcttat tttgctaaag gatgcaccca aacttcaaac 1144 ttcaagcaaa tgaaatggac aatgeagata aagttgttat caacacgtcg ggagtatgtg 1204 tgttagaagc aattcctttt atttctttca cctttcataa gttgttatct agtcaatgta 1264 atgtatattg tattgaaatt tacagtgtgc aaaagtattt tacctttgca taagtgtttg 1324 ataaaeiatga actgttctaa tatttatttt tatggeatet catttttcaa tacatgctct 1384 tttgattaaa gaaacttatt actgttgtca actgaattca cacacacaca aatatagtac 1444 catagaaaaa gtttgttttc tcgaaataat teatetttea gcttctctgc ttttggtcaa 1504 tgtctaggaa atctcttcag aaataagaag ctatttcatt aagtgtgata taaacctcct 1564 caaacatttt aettagagge aaggattgtc taatttcaat tgtgcaagac atgtgcctta 1624 taattatttt tagcttaaaa ttaaacagat tttgtaataa tgtaactttg ttaataggtg 1684 cataaacact aatgeagtea atttgaacaa aagaagtgac atacacaata taaatcatat 1744 gtcttcacac gttgcctata taatgagaag cagctctctg agggttctga aatcaatgtg 1804 gtccctctct tgcccactaa acaaagatgg ttgttcgggg tttgggattg acactggagg 1864 cagatagttg caaagttagt ctaaggtttc cctagctgta tttagcctct gactatatta 1924 gtatacaaag aggtcatgtg gttgagacca ggtgaatagt cactatcagt gtggagacaa 1984 gcacagcaca cagacatttt aggaaggaaa ggaactacga aatcgtgtga aaatgggttg 2044 gaacccatca gtgatcgcat attcattgat gagggtttgc ttgagataga aaatggtggc 2104 tcctttctgt cttatctcct agtttcttca atgettaege cttgttcttc tcaagagaaa 2164 gttgtaactc tctggtcttc atatgtccct gtgctccttt taaccaaata aagagttctt 2224 gtttctgaag aa 2236 <210〉 6 <211〉 232 <212> PRT <213〉智人 <400> 6Leu Trp He Ser Lys Ser Thr Arg Lys Glu Ser Gly Met Glu Val * 220 225 230 taactcattg acttggttcc agaattttgt aattctggat ctgtataagg aatggcatca 964 gaacaatagc ttggaatggc ttgaaatcac aaaggatctg caagatgaac tgtaagctcc 1024 cccttgaggc aaatattaaa gtaattttta tatgtetatt atttcattta aagaatatgc 1084 tgtgctaata atggagtgag acatgcttat tttgctaaag gatgcaccca aacttcaaac 1144 ttcaagcaaa tgaaatggac aatgeagata aagttgttat caacacgtcg ggagtatgtg 1204 tgttagaagc aattcctttt atttctttca cctttcataa gttgttatct agtcaatgta 1264 atgtatattg tattgaaatt tacagtgtgc aaaagtattt tacctttgca taagtgtttg 1324 ataaaeiatga actgttctaa tatttatttt tatggeatet catttttcaa tacatgctct 1384 tttgattaaa gaaacttatt actgttgtca actgaattca cacacacaca aatatagtac 1444 catagaaaaa gtttgttttc tcgaaataat teatetttea gcttctctgc ttttggtcaa 1504 tgtctaggaa atctcttcag aaataagaag ctatttcatt aagtgtgata taaacctcct 1564 caaacatttt aettagagge aaggattgtc taatttcaat Tgtgcaagac atgtgcctta 1624 taattatttt tagcttaaaa ttaaacagat tttgtaataa tgtaactttg ttaataggtg 1684 cata aacact aatgeagtea atttgaacaa aagaagtgac atacacaata taaatcatat 1744 gtcttcacac gttgcctata taatgagaag cagctctctg agggttctga aatcaatgtg 1804 gtccctctct tgcccactaa acaaagatgg ttgttcgggg tttgggattg acactggagg 1864 cagatagttg caaagttagt ctaaggtttc cctagctgta tttagcctct gactatatta 1924 gtatacaaag aggtcatgtg gttgagacca ggtgaatagt cactatcagt gtggagacaa 1984 gcacagcaca cagacatttt aggaaggaaa ggaactacga aatcgtgtga aaatgggttg 2044 gaacccatca gtgatcgcat attcattgat gagggtttgc ttgagataga aaatggtggc 2104 tcctttctgt Cttatctcct agtttcttca atgettaege cttgttcttc tcaagagaaa 2164 gttgtaactc tctggtcttc atatgtccct gtgctccttt taaccaaata aagagttctt 2224 gtttctgaag aa 2236 <210> 6 <211> 232 <212> PRT <213> Homo sapiens <400> 6
Met Ala Tyr Phe His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala 15 10 15Met Ala Tyr Phe His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala 15 10 15
Arg Leu Ala Cys Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn 20 25 30Arg Leu Ala Cys Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn 20 25 30
Glu Ala Glu Gin Lys Leu lie Glu Ser Met Leu Gin Asn Leu Thr Lys 35 40 45Glu Ala Glu Gin Lys Leu lie Glu Ser Met Leu Gin Asn Leu Thr Lys 35 40 45
Pro Gly Thr Gly lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg 50 55 60Pro Gly Thr Gly lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg 50 55 60
Asn Gly Asp Gly Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp 65 70 75 80Asn Gly Asp Gly Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp 65 70 75 80
Ser Asp Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro 85 90 95Ser Asp Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro 85 90 95
Ser Cys Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala 100 105 110Ser Cys Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala 100 105 110
Asn Pro Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg 115 120 125Asn Pro Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg 115 120 125
Cys Asn Met Lys His Asn Tyr He Cys Lys Tyr Glu Pro Glu lie Asn 130 135 140Cys Asn Met Lys His As Tyr He Cys Lys Tyr Glu Pro Glu lie Asn 130 135 140
Pro Thr Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp 145 150 155 160Pro Thr Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp 145 150 155 160
Thr His Gin Asn Val Val Val Thr Glu Ala Gly lie lie Pro Asn Leu 165 170 175 lie Tyr Val Val lie Pro Thr lie Pro Leu Leu Leu Leu lie Leu Val 180 185 190Thr His Gin Asn Val Val Val Thr Glu Ala Gly lie lie Pro Asn Leu 165 170 175 lie Tyr Val Val lie Pro Thr lie Pro Leu Leu Leu Leu lie Leu Val 180 185 190
Ala Phe Gly Thr Cys Cys Phe Gin Met Leu His Lys Ser Lys Gly Arg 195 200 205 -6 - 142769-序列表.doc 201021828Ala Phe Gly Thr Cys Cys Phe Gin Met Leu His Lys Ser Lys Gly Arg 195 200 205 -6 - 142769 - Sequence Listing.doc 201021828
Thr Lys Thr Ser Pro Asn Gin Ser Thr Leu Trp He Ser Lys Ser Thi* 210 215 220Thr Lys Thr Ser Pro Asn Gin Ser Thr Leu Trp He Ser Lys Ser Thi* 210 215 220
Arg Lys Glu Ser Gly Met Glu Val 225 230 <210> 7 <211〉 2133 <212〉 DNA <213〉智人 <220〉Arg Lys Glu Ser Gly Met Glu Val 225 230 <210> 7 <211> 2133 <212> DNA <213> Homo sapiens <220〉
<221〉 CDS <222> (206)... (916) <400〉 7 gcttgaagat ggcagatcgt gggacttctc agcctccata attgagtgag ccaattccct 60 gaatacaaca agaagatggc catctgtaga ccaggaggtg gtccctcccc agaaactgga 120 tgggccagca cgttgattct gagcttctag cctccagaac tgccaaaagg tgtgttttgc 180 tgacttcaag catccctgct acaaa atg gcc tac ttc cat gaa ctg tcc age 232≪ 221> CDS < 222 > (206) ... (916) < 400> 7 gcttgaagat ggcagatcgt gggacttctc agcctccata attgagtgag ccaattccct 60 gaatacaaca agaagatggc catctgtaga ccaggaggtg gtccctcccc agaaactgga 120 tgggccagca cgttgattct gagcttctag cctccagaac tgccaaaagg tgtgttttgc 180 tgacttcaag catccctgct acaaa atg gcc tac Ttc cat gaa ctg tcc age 232
Met Ala Tyr Phe His Glu Leu Ser Ser ega gtg age ttt cag gag gca ege ctg get tgt gag agt gag gga gga 280Met Ala Tyr Phe His Glu Leu Ser Ser ega gtg age ttt cag gag gca ege ctg get tgt gag agt gag gga gga 280
Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys Glu Ser Glu Gly Gly 10 15 20 25 gtc etc etc age ett gag aat gaa gca gaa cag aag tta ata gag age 328Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys Glu Ser Glu Gly Gly 10 15 20 25 gtc etc etc age ett gag aat gaa gca gaa cag aag tta ata gag age 328
Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin Lys Leu lie Glu Ser 30 35 40 atg ttg caa aac ctg aca aaa ccc ggg aca ggg att tet gat ggt gat 376Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin Lys Leu lie Glu Ser 30 35 40 atg ttg caa aac ctg aca aaa ccc ggg aca ggg att tet gat ggt gat 376
Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly lie Ser Asp Gly Asp 45 50 55 ttc tgg ata ggg ett tgg agg aat gga gat ggg caa aca tet ggt gcc 424Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly lie Ser Asp Gly Asp 45 50 55 ttc tgg ata ggg ett tgg agg aat gga gat ggg caa aca tet ggt gcc 424
Phe Trp He Gly Leu Trp Arg Asn Gly Asp Gly Gin Thr Ser Gly Ala 60 65 70 tgc cca gat etc tac cag tgg tet gat gga age aat tec cag tac ega 472Phe Trp He Gly Leu Trp Arg Asn Gly Asp Gly Gin Thr Ser Gly Ala 60 65 70 tgc cca gat etc tac cag tgg tet gat gga age aat tec cag tac ega 472
Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser Asn Ser Gin Tyr Arg 75 80 85 aac tgg tac aca gat gaa cct tec tgc gga agt gaa aag tgt gtt gtg 520Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser Asn Ser Gin Tyr Arg 75 80 85 aac tgg tac aca gat gaa cct tec tgc gga agt gaa aag tgt gtt gtg 520
Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser Glu Lys Cys Val Val 90 95 100 105 atg tat cac caa cca act gcc aat cct ggc ett ggg ggt ccc tac ett 568Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser Glu Lys Cys Val Val 90 95 100 105 atg tat cac caa cca act gcc aat cct ggc ett ggg ggt ccc tac ett 568
Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu Gly Gly Pro Tyr Leu 110 115 120 tac cag tgg aat gat gac agg tgt aac atg aag cac aat tat att tgc 616Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu Gly Gly Pro Tyr Leu 110 115 120 tac cag tgg aat gat gac agg tgt aac atg aag cac aat tat att tgc 616
Tyr Gin Trp Asn Asp Asp Arg Cys Asn Met Lys His Asn Tyr lie Cys 125 130 135 aag tat gaa cca gag att aat cca aca gcc cct gta gaa aag cct tat 664Tyr Gin Trp Asn Asp Asp Arg Cys Asn Met Lys His Asn Tyr lie Cys 125 130 135 aag tat gaa cca gag att aat cca aca gcc cct gta gaa aag cct tat 664
Lys Tyr Glu Pro Glu lie A.sn Pro Thr Ala Pro Val Glu Lys Pro Tyr 140 145 150 ett aca aat caa cca gga gac acc cat cag aat gtg gtt gtt act gaa 712Lys Tyr Glu Pro Glu lie A.sn Pro Thr Ala Pro Val Glu Lys Pro Tyr 140 145 150 ett aca aat caa cca gga gac acc cat cag aat gtg gtt gtt act gaa 712
Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn Val Val Val Thr Glu 155 160 165 gca gta aag gaa gaa caa aaa eta gtc caa acc agt eta cac tgt gga 760Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn Val Val Val Thr Glu 155 160 165 gca gta aag gaa gaa caa aaa eta gtc caa acc agt eta cac tgt gga 760
Ala Val Lys Glu Glu Gin Lys Leu Val Gin Thr Ser Leu His Cys Gly 170 175 180 185 ttt caa aga gta cca gaa aag aaa, gtg gca tgg aag tat aat aac tea 808Ala Val Lys Glu Glu Gin Lys Leu Val Gin Thr Ser Leu His Cys Gly 170 175 180 185 ttt caa aga gta cca gaa aag aaa, gtg gca tgg aag tat aat aac tea 808
Phe Gin Arg Val Pro Glu Lys Lys Val Ala Ti*p Lys Tyr Asn Asn Ser 190 195 200 ttg act tgg ttc cag aat ttt gta att ctg gat ctg tat aag gaa tgg 856Phe Gin Arg Val Pro Glu Lys Lys Val Ala Ti*p Lys Tyr Asn Asn Ser 190 195 200 ttg act tgg ttc cag aat ttt gta att ctg gat ctg tat aag gaa tgg 856
Leu Thr Trp Phe Gin Asn Phe Val lie Leu Asp Leu Tjrr Lys Glu Trp 205 210 215 142769-序列表.doc 201021828 cat cag aac aat age ttg gaa tgg ett gaa ate aca aag gat ctg caa 904Leu Thr Trp Phe Gin Asn Phe Val lie Leu Asp Leu Tjrr Lys Glu Trp 205 210 215 142769 - Sequence Listing.doc 201021828 cat cag aac aat age ttg gaa tgg ett gaa ate aca aag gat ctg caa 904
His Gin Asn Asn Ser Leu Glu Trp Leu Glu lie Thr Lys Asp Leu Gin 220 225 230 gat gaa ctg taa gctccccctt gaggcaaata ttaaagtaat ttttatatgt 956His Gin Asn Asn Ser Leu Glu Trp Leu Glu lie Thr Lys Asp Leu Gin 220 225 230 gat gaa ctg taa gctccccctt gaggcaaata ttaaagtaat ttttatatgt 956
Asp Glu Leu * 235 ctattatttc atttaaagaa tatgctgtgc taataatgga gtgagacatg cttattttgc 1016 taaaggatgc acccaaactt caaacttcaa gcaaatgaaa tggacaatgc agataaagtt 1076 gttatcaaca cgtcgggagt atgtgtgtta gaagcaattc cttttatttc tttcaccttt 1136 cataagttgt tatetagtea atgtaatgta tattgtattg aaatttacag tgtgcaaaag 1196 tattttacct ttgcataagt gtttgataaa aatgaactgt tetaatattt atttttatgg 1256 catctcattt ttcaatacat gctcttttga ttaaagaaac ttattactgt tgtcaactga 1316 attcacacac acacaaatat agtaccatag aaaaagtttg ttttctcgaa ataattcatc 1376 tttcagcttc tctgcttttg gtcaatgtct aggaaatctc ttcagaaata agaagetatt 1436 tcattaagtg tgatataaac ctcctcaaac attttactta gaggcaagga ttgtctaatt 1496 tcaattgtgc aagacatgtg ccttataatt atttttagct taaaattaaa cagattttgt 1556 aataatgtaa ctttgttaat aggtgcataa acactaatgc agtcaatttg aacaaaagaa 1616 gtgacataca caatataaat catatgtctt cacacgttgc ctatataatg agaageaget 1676 ctctgagggt tctgaaatca atgtggtccc tctcttgccc actaaacaaa gatggttgtt 1736 cggggtttgg gattgacact ggaggeagat agttgcaaag ttagtetaag gtttccctag 1796 ctgtatttag cctctgacta tattagtata caaagaggtc atgtggttga gaocaggtga 1856 atagtcacta tcagtgtgga gacaagcaca gcacacagac attttaggaa ggaaaggaac 1916 taegaaateg tgtgaaaatg ggttggaacc catcagtgat egeatattea ttgatgaggg 1976 tttgettgag atEigaaaatg gtggctcctt tctgtcttat ctcctagttt cttcaatgct 2036 taegeettgt tcttctcaag agaaagttgt aactctctgg tcttcatatg tccctgtgct 2096 ccttttaacc aaataaagag ttcttgtttc tgaagaa 2133 <210> 8 <211> 236 <212> PRT <213〉智人 <400> 8Asp Glu Leu * 235 ctattatttc atttaaagaa tatgctgtgc taataatgga gtgagacatg cttattttgc 1016 taaaggatgc acccaaactt caaacttcaa gcaaatgaaa tggacaatgc agataaagtt 1076 gttatcaaca cgtcgggagt atgtgtgtta gaagcaattc cttttatttc tttcaccttt 1136 cataagttgt tatetagtea atgtaatgta tattgtattg aaatttacag tgtgcaaaag 1196 tattttacct ttgcataagt gtttgataaa aatgaactgt tetaatattt atttttatgg 1256 catctcattt ttcaatacat gctcttttga ttaaagaaac ttattactgt tgtcaactga 1316 attcacacac acacaaatat agtaccatag aaaaagtttg ttttctcgaa ataattcatc 1376 tttcagcttc tctgcttttg gtcaatgtct aggaaatctc ttcagaaata agaagetatt 1436 tcattaagtg tgatataaac ctcctcaaac attttactta gaggcaagga ttgtctaatt 1496 tcaattgtgc aagacatgtg ccttataatt atttttagct taaaattaaa cagattttgt 1556 aataatgtaa ctttgttaat aggtgcataa acactaatgc agtcaatttg aacaaaagaa 1616 gtgacataca caatataaat catatgtctt cacacgttgc ctatataatg agaageaget 1676 ctctgagggt tctgaaatca atgtggtccc tctcttgccc actaaacaaa gatggttgtt 1736 cggggtttgg gattgacact ggaggeagat agttgcaaag Ttgtetaag gttt ccctag 1796 ctgtatttag cctctgacta tattagtata caaagaggtc atgtggttga gaocaggtga 1856 atagtcacta tcagtgtgga gacaagcaca gcacacagac attttaggaa ggaaaggaac 1916 taegaaateg tgtgaaaatg ggttggaacc catcagtgat egeatattea ttgatgaggg 1976 tttgettgag atEigaaaatg gtggctcctt tctgtcttat ctcctagttt cttcaatgct 2036 taegeettgt tcttctcaag agaaagttgt aactctctgg tcttcatatg tccctgtgct 2096 ccttttaacc aaataaagag ttcttgtttc tgaagaa 2133 < 210 > 8 < 211 > 236 <212> PRT <213> Homo sapiens <400> 8
Met Ala Tyr Phe His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala 15 10 15Met Ala Tyr Phe His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala 15 10 15
Arg Leu Ala Cys Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn 20 25 30Arg Leu Ala Cys Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn 20 25 30
Glu Ala Glu Gin Lys Leu lie Glu Ser Met Leu Gin Asn Leu Thr Lys 35 40 45Glu Ala Glu Gin Lys Leu lie Glu Ser Met Leu Gin Asn Leu Thr Lys 35 40 45
Pro Gly Thr Gly lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg 50 55 60Pro Gly Thr Gly lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg 50 55 60
Asn Gly Asp Gly Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp 65 70 75 80Asn Gly Asp Gly Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp 65 70 75 80
Ser Asp Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro 85 90 95Ser Asp Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro 85 90 95
Ser Cys Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala 100 105 110Ser Cys Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala 100 105 110
Asn Pro Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg 115 120 125Asn Pro Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg 115 120 125
Cys Asn Met Lys His Asn Tyr lie Cys Lys Tyr Glu Pro Glu lie Asn 130 135 140Cys Asn Met Lys His As Tyr lie Cys Lys Tyr Glu Pro Glu lie Asn 130 135 140
Pro Thr Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp 145 150 155 160Pro Thr Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp 145 150 155 160
Thr His Gin Asn Val Val Val Thr Glu Ala Val Lys Glu Glu Gin Lys 165 170 175Thr His Gin Asn Val Val Val Thr Glu Ala Val Lys Glu Glu Gin Lys 165 170 175
Leu Val Gin Thr Ser Leu His Cys Gly Phe Gin Arg Val Pro Glu Lys 180 185 190Leu Val Gin Thr Ser Leu His Cys Gly Phe Gin Arg Val Pro Glu Lys 180 185 190
Lys Val Ala Trp Lys Tyr Asn Asn Ser Leu Thr Trp Phe Gin Asn Phe 195 200 205Lys Val Ala Trp Lys Tyr Asn Asn Ser Leu Thr Trp Phe Gin Asn Phe 195 200 205
Val lie Leu Asp Leu Tyr Lys Glu Trp His Gin Asn Asn Ser Leu Glu 210 215 220Val lie Leu Asp Leu Tyr Lys Glu Trp His Gin Asn Asn Ser Leu Glu 210 215 220
Trp Leu Glu lie Thr Lys Asp Leu Gin Asp Glu Leu 225 230 235 <210> 9 <211> 2033 <212〉 DNA <213〉智人 <220>Trp Leu Glu lie Thr Lys Asp Leu Gin Asp Glu Leu 225 230 235 <210> 9 <211> 2033 <212> DNA <213> Homo sapiens <220>
<221〉 CDS <222〉(106)(816) 142769-序列表.doc 201021828 <400> 9 gcttgaagat ggcagatcgt gggacttctc agcctccata attgagtgag ccaattccct 60 ggccaaaagg tgtgttttgc tgacttcaag catccctgct acaaa atg gcc tac ttc 117<221> CDS <221>(106)(816) 142769-sequence table.doc 201021828 <400> 9 gcttgaagat ggcagatcgt gggacttctc agcctccata attgagtgag ccaattccct 60 ggccaaaagg tgtgttttgc tgacttcaag catccctgct acaaa atg gcc tac ttc 117
Met Ala Tyr Phe cat gaa ctg tcc age ega gtg age ttt cag gag gca ege ctg get tgt 165Met Ala Tyr Phe cat gaa ctg tcc age ega gtg age ttt cag gag gca ege ctg get tgt 165
His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys 5 10 15 20 gag agt gag gga gga gtc etc etc age ett gag aat gaa gca gaa cag 213His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala Arg Leu Ala Cys 5 10 15 20 gag agt gag gga gga gtc etc etc age ett gag aat gaa gca gaa cag 213
Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin 25 30 35 aag tta ata gag age atg ttg caa aac ctg aca aaa ccc ggg aca ggg 261Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn Glu Ala Glu Gin 25 30 35 aag tta ata gag age atg ttg caa aac ctg aca aaa ccc ggg aca ggg 261
Lys Leu He Glu Ser Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly 40 45 50 att tet gat ggt gat ttc tgg ata ggg ett tgg agg aat gga gat ggg 309 lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg Asn Gly Asp Gly 55 60 65 caa aca tet ggt gcc tgc cca gat etc tac cag tgg tet gat gga age 357Lys Leu He Glu Ser Met Leu Gin Asn Leu Thr Lys Pro Gly Thr Gly 40 45 50 att tet gat ggt gat ttc tgg ata ggg ett tgg agg aat gga gat ggg 309 lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg Asn Gly Asp Gly 55 60 65 caa aca tet ggt gcc tgc cca gat etc tac cag tgg tet gat gga age 357
Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly SerGin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp Ser Asp Gly Ser
70 75 80 aat tec cag tac ega aac tgg tac aca gat gaa cct tec tgc gga agt 40570 75 80 aat tec cag tac ega aac tgg tac aca gat gaa cct tec tgc gga agt 405
Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser 85 90 95 100 gaa aag tgt gtt gtg atg tat cac caa cca act gcc aat cct ggc ett 453Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro Ser Cys Gly Ser 85 90 95 100 gaa aag tgt gtt gtg atg tat cac caa cca act gcc aat cct ggc ett 453
Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu 105 110 115 ggg ggt ccc tac ett tac cag tgg aat gat gac agg tgt aac atg aag 501Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala Asn Pro Gly Leu 105 110 115 ggg ggt ccc tac ett tac cag tgg aat gat gac agg tgt aac atg aag 501
Gly Gly Pro Tyr Leu Tyi- Gin Trp Asn Asp Asp Arg Cys Asn Met Lys 120 125 130 cac aat tat att tgc aag tat gaa cca gag att aat cca aca gcc cct 549Gly Gly Pro Tyr Leu Tyi- Gin Trp Asn Asp Asp Arg Cys Asn Met Lys 120 125 130 cac aat tat att tgc aag tat gaa cca gag att aat cca aca gcc cct 549
His Asn Tyr lie Cys Lys Tyr Glu Pro Glu lie Asn Pro Thr Ala Pro 135 140 145 gta gaa aag cct tat ett aca aat caa cca gga gac acc cat cag aat 597His Asn Tyr lie Cys Lys Tyr Glu Pro Glu lie Asn Pro Thr Ala Pro 135 140 145 gta gaa aag cct tat ett aca aat caa cca gga gac acc cat cag aat 597
Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn 150 155 160 645 693 gtg gtt gtt act gaa gca gta aag gaa gaa caa aaa eta gtc caa accVal Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp Thr His Gin Asn 150 155 160 645 693 gtg gtt gtt act gaa gca gta aag gaa gaa caa aaa eta gtc caa acc
Val Val Val Thr Glu Ala Val Lys Glu Glu Gin Lys Leu Val Gin Thr 165 170 175 180 agt eta cac tgt gga ttt caa aga gta cca gaa aag aaa gtg gca tggVal Val Val Thr Glu Ala Val Lys Glu Glu Gin Lys Leu Val Gin Thr 165 170 175 180 agt eta cac tgt gga ttt caa aga gta cca gaa aag aaa gtg gca tgg
Ser Leu His Cys Gly Phe Gin Arg Val Pro Glu Lys Lys Val Ala Trp 185 190 195 aag tat aat aac tea ttg act tgg ttc cag aat ttt gta att ctg gat 741Ser Leu His Cys Gly Phe Gin Arg Val Pro Glu Lys Lys Val Ala Trp 185 190 195 aag tat aat aac tea ttg act tgg ttc cag aat ttt gta att ctg gat 741
Lys Tyr Asn Asn Ser Leu Thr Trp Phe Gin Asn Phe Val lie Leu Asp 200 205 210 ctg tat aag gaa tgg cat cag aac aat age ttg gaa tgg ett gaa ate 789Lys Tyr Asn Asn Ser Leu Thr Trp Phe Gin Asn Phe Val lie Leu Asp 200 205 210 ctg tat aag gaa tgg cat cag aac aat age ttg gaa tgg ett gaa ate 789
Leu Tyr Lys Glu Trp His Gin Asn Asn Ser Leu Glu Trp Leu Glu lie 215 220 225 aca aag gat ctg caa gat gaa ctg taa gctccccctt gaggcaaata 836Leu Tyr Lys Glu Trp His Gin Asn Asn Ser Leu Glu Trp Leu Glu lie 215 220 225 aca aag gat ctg caa gat gaa ctg taa gctccccctt gaggcaaata 836
Thr Lys Asp Leu Gin Asp Glu Leu * 230 235 ttaaagtaat ttttatatgt ctattatttc atttaaagaa tatgctgtgc taataatgga 896 gtgagacatg cttattttgc taaaggatgc acccaaactt caaacttcaa gcaaatgaaa 956 tggacaatgc agataaagtt gttatcaaca cgtcgggagt atgtgtgtta gaagcaattc 1016 cttttatttc tttcaccttt cataagttgt tatetagtea atgtaatgta tattgtattg 1076 aaatttacag tgtgcaaaag tattttacct ttgcataagt gtttgataaa aatgaactgt 1136 tetaatattt atttttatgg catctcattt ttcaatacat gctcttttga ttaaagaaac 1196 ttattactgt tgtcaactga attcacacac acacaaatat agtaccatag aaaaagtttg 1256 ttttctcgaa ataattcatc tttcagcttc tctgcttttg gtcaatgtct aggaaatctc 1316 142769·序列表.doc 201021828 ttcagaaata agaagctatt tcattaagtg tgatataaac ctcctcaaac attttactta 1376 gaggcaagga ttgtctaatt tcaattgtgc £Lagacatgtg ccttataatt atttttagct 1436 taaaattaaa cagattttgt aataatgtaa ctttgttaat aggtgcataa acactaatgc 1496 agtcaatttg aacaaaagaa gtgacataca caatataaat catatgtctt cacacgttgc 1556 ctatataatg agaagcagct ctctgagggt tctgaaatca atgtggtccc tctcttgccc 1616 actaaacaaa gatggttgtt cggggtttgg gattgacact ggaggcagat agttgcaaag 1676 ttagtctaag gtttc^ctag ctgtatttag cctctgacta tattagtata caaagaggtc 1736 atgtggttga gaccaggtga atagtcacta tcagtgtgga gacaagcaca gcacacagac 1796 attttaggaa ggaaaggaac tacgaaatcg tgtgaaaatg ggttggaacc catcagtgat 1856 cgcatattca ttgatgaggg tttgcttgag atagaaaatg gtggctcctt tctgtcttat 1916 ctcctagttt cttcaatgct tacgccttgt tcttctcaag agaaagttgt aactctctgg 1976 tcttcatatg tccctgtgct ccttttaacc aaataaagag ttcttgtttc tgaagaa 2033 <210> 10 <211〉 236 <212> PRT <213〉智人 <400〉 10Thr Lys Asp Leu Gin Asp Glu Leu * 230 235 ttaaagtaat ttttatatgt ctattatttc atttaaagaa taataatgga 896 gtgagacatg cttattttgc taaaggatgc acccaaactt caaacttcaa gcaaatgaaa 956 tggacaatgc agataaagtt gttatcaaca cgtcgggagt atgtgtgtta gaagcaattc 1016 cttttatttc tttcaccttt cataagttgt tatetagtea atgtaatgta tattgtattg 1076 aaatttacag tgtgcaaaag tattttacct ttgcataagt gtttgataaa aatgaactgt 1136 tetaatattt atttttatgg catctcattt ttcaatacat tatgctgtgc gctcttttga ttaaagaaac 1196 ttattactgt tgtcaactga attcacacac acacaaatat agtaccatag aaaaagtttg 1256 ttttctcgaa ataattcatc tttcagcttc tctgcttttg gtcaatgtct aggaaatctc 1316 142769 · sequence Listing .doc 201021828 ttcagaaata agaagctatt tcattaagtg tgatataaac ctcctcaaac attttactta 1376 gaggcaagga ttgtctaatt tcaattgtgc £ Lagacatgtg ccttataatt atttttagct 1436 taaaattaaa cagattttgt aataatgtaa ctttgttaat aggtgcataa acactaatgc 1496 agtcaatttg aacaaaagaa gtgacataca caatataaat Catatgtctt cacacgttgc 1556 ctatataatg agaagcagct ctctgagggt tctgaaatca atgtggtccc tctcttgccc 1616 act aaacaaa gatggttgtt cggggtttgg gattgacact ggaggcagat agttgcaaag 1676 ttagtctaag gtttc ^ ctag ctgtatttag cctctgacta tattagtata caaagaggtc 1736 atgtggttga gaccaggtga atagtcacta tcagtgtgga gacaagcaca gcacacagac 1796 attttaggaa ggaaaggaac tacgaaatcg tgtgaaaatg ggttggaacc catcagtgat 1856 cgcatattca ttgatgaggg tttgcttgag atagaaaatg gtggctcctt tctgtcttat 1916 ctcctagttt cttcaatgct tacgccttgt tcttctcaag agaaagttgt aactctctgg 1976 tcttcatatg tccctgtgct ccttttaacc aaataaagag ttcttgtttc tgaagaa 2033 <210> 10 <211> 236 <212> PRT <213> Homo sapiens <400> 10
Met Ala Tyr Phe His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala 15 10 15Met Ala Tyr Phe His Glu Leu Ser Ser Arg Val Ser Phe Gin Glu Ala 15 10 15
Arg Leu Ala Cys Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn 20 25 30Arg Leu Ala Cys Glu Ser Glu Gly Gly Val Leu Leu Ser Leu Glu Asn 20 25 30
Glu Ala Glu Gin Lys Leu lie Glu Ser Met Leu Gin Asn Leu Thr Lys 35 40 45Glu Ala Glu Gin Lys Leu lie Glu Ser Met Leu Gin Asn Leu Thr Lys 35 40 45
Pro Gly Thr Gly lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg 50 55 60Pro Gly Thr Gly lie Ser Asp Gly Asp Phe Trp lie Gly Leu Trp Arg 50 55 60
Asn Gly Asp Gly Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp 65 70 75 80Asn Gly Asp Gly Gin Thr Ser Gly Ala Cys Pro Asp Leu Tyr Gin Trp 65 70 75 80
Ser Asp Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro 85 90 95Ser Asp Gly Ser Asn Ser Gin Tyr Arg Asn Trp Tyr Thr Asp Glu Pro 85 90 95
Ser Cys Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala 100 105 110Ser Cys Gly Ser Glu Lys Cys Val Val Met Tyr His Gin Pro Thr Ala 100 105 110
Asn Pro Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg 115 120 125Asn Pro Gly Leu Gly Gly Pro Tyr Leu Tyr Gin Trp Asn Asp Asp Arg 115 120 125
Cys Asn Met Lys His Asn Tyr lie Cys Lys Tyr Glu Pro Glu lie Asn 130 135 140Cys Asn Met Lys His As Tyr lie Cys Lys Tyr Glu Pro Glu lie Asn 130 135 140
Pro Thr Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp 145 150 155 160Pro Thr Ala Pro Val Glu Lys Pro Tyr Leu Thr Asn Gin Pro Gly Asp 145 150 155 160
Thr His Gin Asn Val Val Val Thr Glu Ala Val Lys Glu Glu Gin Lys 165 170 175Thr His Gin Asn Val Val Val Thr Glu Ala Val Lys Glu Glu Gin Lys 165 170 175
Leu Val Gin Thr Ser Leu His Cys Gly Phe Gin Arg Val Pro Glu Lys 180 185 190Leu Val Gin Thr Ser Leu His Cys Gly Phe Gin Arg Val Pro Glu Lys 180 185 190
Lys Val Ala Trp Lys Tyr Asn Asn Ser Leu Thr Trp Phe Gin Asn Phe 195 200 205Lys Val Ala Trp Lys Tyr Asn Asn Ser Leu Thr Trp Phe Gin Asn Phe 195 200 205
Val lie Leu Asp Leu Tyr Lys Glu Trp His Gin Asn Asn Ser Leu Glu 210 215 220Val lie Leu Asp Leu Tyr Lys Glu Trp His Gin Asn Asn Ser Leu Glu 210 215 220
Trp Leu Glu lie Thr Lys Asp Leu Gin Asp Glu Leu 225 230 235 <210> 11 <211> 649 <212> DNA <213〉智人 <220〉 <221> CDS <222> (39). . . (648) <400> 11 aatactttct gagagtcctg gacctcctgt gcaagaac atg aaa cac ctg tgg ttc 56Trp Leu Glu lie Thr Lys Asp Leu Gin Asp Glu Leu 225 230 235 <210> 11 <211> 649 <212> DNA <213> Homo sapiens <220>221> CDS <222> 39). . . (648) <400> 11 aatactttct gagagtcctg gacctcctgt gcaagaac atg aaa cac ctg tgg ttc 56
Met Lys His Leu Trp Phe 1 5 ttc etc etc ctg gtg gca get ccc aga tgg gtc ctg tcc cag gtg cag 104Met Lys His Leu Trp Phe 1 5 ttc etc etc ctg gtg gca get ccc aga tgg gtc ctg tcc cag gtg cag 104
Phe Leu Leu Leu Val Ala Ala Pro Arg Trp Val Leu Ser Gin Val Gin 10 15 20 ctg cag gag teg ggc cca gga ctg gtg aag cct teg gag acc ctg tcc 152Phe Leu Leu Leu Val Ala Ala Pro Arg Trp Val Leu Ser Gin Val Gin 10 15 20 ctg cag gag teg ggc cca gga ctg gtg aag cct teg gag acc ctg tcc 152
Leu Gin Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Glu Thr Leu Ser 25 30 35 etc acc tgc act gtc tet ggt ggc tcc gtc age agt ggt ggt tac tac 200Leu Gin Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Glu Thr Leu Ser 25 30 35 etc acc tgc act gtc tet ggt ggc tcc gtc age agt ggt ggt tac tac 200
Leu Thr Cys Thr Val Ser Gly Gly Ser Val Ser Ser Gly Gly Tyr Tyr -10· 142769-序列表.doc 248 201021828 248 40 45 50Leu Thr Cys Thr Val Ser Gly Gly Ser Val Ser Ser Gly Gly Tyr Tyr -10· 142769 - Sequence Listing.doc 248 201021828 248 40 45 50
tgg age tgg ate egg cag ccc cca ggg aag gga ctg gag tgg att gggTgg age tgg ate egg cag ccc cca ggg aag gga ctg gag tgg att ggg
Trp Ser Trp lie Arg Gin Pro Pro Gly Lys Gly Leu Glu Trp lie Gly 55 60 65 70 tat ate tat tac agt ggg ggc acc aac tac aac ccc tee etc aag agtTrp Ser Trp lie Arg Gin Pro Pro Gly Lys Gly Leu Glu Trp lie Gly 55 60 65 70 tat ate tat tac agt ggg ggc acc aac tac aac ccc tee etc aag agt
Tyr lie Tyr Tyr Ser Gly Gly Thr Asn Tyr Asn Pro Ser Leu Lys Ser 75 80 85 ega gtc acc ata tea gta gac aeg tee aag aac cag ttc tee ctg aagTyr lie Tyr Tyr Ser Gly Gly Thr Asn Tyr Asn Pro Ser Leu Lys Ser 75 80 85 ega gtc acc ata tea gta gac aeg tee aag aac cag ttc tee ctg aag
Arg Val Thr lie Ser Val Asp Thr Ser Lys Asn Gin Phe Ser Leu Lys 90 95 100 ctg acc tet gtg acc get geg gac aeg gee gtg tat tac tgt geg agaArg Val Thr lie Ser Val Asp Thr Ser Lys Asn Gin Phe Ser Leu Lys 90 95 100 ctg acc tet gtg acc get geg gac aeg gee gtg tat tac tgt geg aga
Leu Thr Ser Val Thr Ala Ala Asp Thr Ala Val Tyr Tyr Cys Ala Arg 105 110 115 gag teg gga tat tgt act aat gtt gca tgc ttc cct gat get ttt gatLeu Thr Ser Val Thr Ala Ala Asp Thr Ala Val Tyr Tyr Cys Ala Arg 105 110 115 gag teg gga tat tgt act aat gtt gca tgc ttc cct gat get ttt gat
Glu Ser Gly Tyr Cys Thr Asn Val Ala Cys Phe Pro Asp Ala Phe Asp 120 125 130 ate tgg ggc caa ggg aca atg gtc acc gtg tet tea gee tee acc aag lie Trp Gly Gin Gly Thr Met Val Thr Val Ser Ser Ala Ser Thr Lys 135 140 145 150 ggc cca teg gtc ttc ccc ctg gca ccc tee tee aag age acc tet gggGlu Ser Gly Tyr Cys Thr Asn Val Ala Cys Phe Pro Asp Ala Phe Asp 120 125 130 ate tgg ggc caa ggg aca atg gtc acc gtg tet tea gee tee acc aag lie Trp Gly Gin Gly Thr Met Val Thr Val Ser Ser Ala Ser Thr Lys 135 140 145 150 ggc cca teg gtc ttc ccc ctg gca ccc tee tee aag age acc tet ggg
Gly Pro Ser Val Phe Pro Leu Ala Pro Ser Ser Lys Ser Thr Ser Gly 155 160 165 ggc aca geg gee ctg ggc tgc ctg gtc aag gac tac ttc ccc gaa ccg Gly Thr Ala Ala Leu Gly Cys Leu Val Lys Asp Tyr Phe Pro Glu Pro 170 175 180 gtg aeg gtg teg tgg aac tea ggc gee ctg acc age ggc gtg cac acc Val Thr Val Ser Trp Asn Ser Gly Ala Leu Thr Ser Gly Val His Thr 185 190 195 ttc cca get gtc eta c a Phe Pro Ala Val Leu 200 <210〉 12 <211> 203 <212〉 PRT <213〉智人 <400〉 12Gly Pro Ser Val Phe Pro Leu Ala Pro Ser Ser Lys Ser Thr Ser Gly 155 160 165 ggc aca geg gee ctg ggc tgc ctg gtc aag gac tac ttc ccc gaa ccg Gly Thr Ala Ala Leu Gly Cys Leu Val Lys Asp Tyr Phe Pro Glu Pro 170 175 180 gtg aeg gtg teg tgg aac tea ggc gee ctg acc age ggc gtg cac acc Val Thr Val Ser Trp Asn Ser Gly Ala Leu Thr Ser Gly Val His Thr 185 190 195 ttc cca get gtc eta ca Phe Pro Ala Val Leu 200 <210> 12 <211> 203 <212> PRT <213> Homo sapiens <400> 12
Met Lys His Leu Τχ-p Phe Phe Leu Leu Leu Val Ala Ala Pro Arg Trp 15 10 15Met Lys His Leu Τχ-p Phe Phe Leu Leu Leu Val Ala Ala Pro Arg Trp 15 10 15
Val Leu Ser Gin Val Gin Leu Gin Glu Ser Gly Pro Gly Leu Val Lys 20 25 30Val Leu Ser Gin Val Gin Leu Gin Glu Ser Gly Pro Gly Leu Val Lys 20 25 30
Pro Ser Glu Thr Leu Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Val 35 40 45Pro Ser Glu Thr Leu Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Val 35 40 45
Ser Ser Gly Gly Tyr Tyr Trp Ser Trp lie Arg Gin Pro Pro Gly Lys 50 55 60Ser Ser Gly Gly Tyr Tyr Trp Ser Trp lie Arg Gin Pro Pro Gly Lys 50 55 60
Gly Leu Glu Trp lie Gly Tyr lie Tyr Tyr Ser Gly Gly Thr Asn Tyr 65 70 75 80Gly Leu Glu Trp lie Gly Tyr lie Tyr Tyr Ser Gly Gly Thr Asn Tyr 65 70 75 80
Asn Pro Ser Leu Lys Ser Arg Val Thr lie Ser Val Asp Thr Ser Lys 85 90 95Asn Pro Ser Leu Lys Ser Arg Val Thr lie Ser Val Asp Thr Ser Lys 85 90 95
Asn Gin Phe Ser Leu Lys Leu Thr Ser Val Thr Ala Ala Asp Thr Ala 100 105 110Asn Gin Phe Ser Leu Lys Leu Thr Ser Val Thr Ala Ala Asp Thr Ala 100 105 110
Val Tyi' Tyr Cys Ala Arg Glu Ser Gly Tyr Cys Thr Asn Val Ala Cys 115 120 125Val Tyi' Tyr Cys Ala Arg Glu Ser Gly Tyr Cys Thr Asn Val Ala Cys 115 120 125
Phe Pro Asp Ala Phe Asp lie Trp Gly Gin Gly Thr Met Val Thr Val 130 135 140Phe Pro Asp Ala Phe Asp lie Trp Gly Gin Gly Thr Met Val Thr Val 130 135 140
Ser Ser Ala Ser Thr Lys Gly Px*o Ser Val Phe Pro Leu Ala Pro Ser 145 150 155 160Ser Ser Ala Ser Thr Lys Gly Px*o Ser Val Phe Pro Leu Ala Pro Ser 145 150 155 160
Ser Lys Ser Thr Ser Gly Gly Thr Ala Ala Leu Gly Cys Leu Val Lys 165 170 175Ser Lys Ser Thr Ser Gly Gly Thr Ala Ala Leu Gly Cys Leu Val Lys 165 170 175
Asp Tyr Phe Pro Glu Pro Val Thr Val Ser Trp Asn Ser Gly Ala Leu 180 185 190Asp Tyr Phe Pro Glu Pro Val Thr Val Ser Trp Asn Ser Gly Ala Leu 180 185 190
Thr Ser Gly Val His Thr Phe Pro Ala Val Leu 195 200 142769-序列表.doc -11- 296 344 392 440 488 536 584 632 649 201021828 <210〉 13 <211〉 884 <212〉 DNA <213〉智人 <220>Thr Ser Gly Val His Thr Phe Pro Ala Val Leu 195 200 142769 - Sequence Listing.doc -11- 296 344 392 440 488 536 584 632 649 201021828 <210> 13 <211> 884 <212> DNA <213 〉 Homo sapiens <220>
<221〉 CDS <222〉(100). .. (81® <400〉 13 caccgcggtg gcggccgctc tagcccgact ggagcacgag gacactgaca tggactgatg gagtagaaag atcaggactc ctcagttcac cttctcaca atg agg etc cct get<221> CDS <222>(100). .. (81® <400> 13 caccgcggtg gcggccgctc tagcccgact ggagcacgag gacactgaca tggactgatg gagtagaaag atcaggactc ctcagttcac cttctcaca atg agg etc cct get
Met Arg Leu Pro Ala cag etc ctg ggg ctg eta atg etc tgg gtc cca gga tee agt ggg gatMet Arg Leu Pro Ala cag etc ctg ggg ctg eta atg etc tgg gtc cca gga tee agt ggg gat
Gin Leu Leu Gly Leu Leu Met Leu Trp Val Pro Gly Ser Ser Gly Asp 10 15 20 gtt gtg atg act cag tet cca etc tee ctg ccc gtc acc ett gga cagGin Leu Leu Gly Leu Leu Met Leu Trp Val Pro Gly Ser Ser Gly Asp 10 15 20 gtt gtg atg act cag tet cca etc tee ctg ccc gtc acc ett gga cag
Val Val Met Thr Gin Ser Pro Leu Ser Leu Pro Val Thr Leu Gly Gin 25 30 35 ccg gee tee ate tee tgc agg tet agt caa age etc gta tac act gatVal Val Met Thr Gin Ser Pro Leu Ser Leu Pro Val Thr Leu Gly Gin 25 30 35 ccg gee tee ate tee tgc agg tet agt caa age etc gta tac act gat
Pro Ala Ser lie Ser Cys Arg Ser Ser Gin Ser Leu Val Tyr Thr Asp 40 45 50 gga aac acc tee ttg aat tgg ttt cag cag agg cca ggc caa tet ccaPro Ala Ser lie Ser Cys Arg Ser Ser Gin Ser Leu Val Tyr Thr Asp 40 45 50 gga aac acc tee ttg aat tgg ttt cag cag agg cca ggc caa tet cca
Gly Asn Thr Ser Leu Asn Trp Phe Gin Gin Arg Pro Gly Gin Ser Pro 55 60 65 agg ege eta att tat aag gtt tet aac tgg gac tet ggg gtc cca gacGG ge ge eta att tat aag gtt tet aac tgg gac tet ggg gtc cca gac
Arg Arg Leu lie Tyr Lys Val Ser Asn Trp Asp Ser Gly Val Pro Asp 70 75 80 85 age ttc age ggc agt ggg tea ggc act gat ttc aca ctg aaa ate ageArg Arg Leu lie Tyr Lys Val Ser Asn Trp Asp Ser Gly Val Pro Asp 70 75 80 85 age ttc age ggc agt ggg tea ggc act gat ttc aca ctg aaa ate age
Ser Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Lys lie Ser 90 95 100 agg gtg gag get gaa aat gtt ggg gtt tat tac tgc atg caa ggt acaSer Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Lys lie Ser 90 95 100 agg gtg gag get gaa aat gtt ggg gtt tat tac tgc atg caa ggt aca
Arg Val Glu Ala Glu Asn Val Gly Val Tyr Tyr Cys Met Gin Gly Thr 105 110 115 cac tgg cct ttc act ttc ggc gga ggg acc eiag gtg gag ate aaa egaArg Val Glu Ala Glu Asn Val Gly Val Tyr Tyr Cys Met Gin Gly Thr 105 110 115 cac tgg cct ttc act ttc ggc gga ggg acc eiag gtg gag ate aaa ega
His Trp Pro Phe Thr Phe Gly Gly Gly Thr Lys Val Glu lie Lys Arg 120 125 130 act gtg get gca cca tet gtc ttc ate ttc ccg cca tet gat gag cagHis Trp Pro Phe Thr Phe Gly Gly Gly Thr Lys Val Glu lie Lys Arg 120 125 130 act gtg get gca cca tet gtc ttc ate ttc ccg cca tet gat gag cag
Thr Val Ala Ala Pro Ser Val Phe lie Phe Pro Pro Ser Asp Glu Gin 135 140 145 ttg aaa tet gga act gee tet gtt gtg tgc ctg ctg aat aac ttc tatThr Val Ala Ala Pro Ser Val Phe lie Phe Pro Pro Ser Asp Glu Gin 135 140 145 ttg aaa tet gga act gee tet gtt gtg tgc ctg ctg aat aac ttc tat
Leu Lys Ser Gly Thr Ala Ser Val Val Cys Leu Leu Asn Asn Phe Tyr 150 155 160 165 ccc aga gag gee aaa gta cag tgg aag gtg gat aac gee etc caa tegLeu Lys Ser Gly Thr Ala Ser Val Val Cys Leu Leu Asn Asn Phe Tyr 150 155 160 165 ccc aga gag gee aaa gta cag tgg aag gtg gat aac gee etc caa teg
Pro Arg Glu Ala Lys Val Gin Trp Lys Val Asp Asn Ala Leu Gin Ser 170 175 180 ggt aac tee cag gag agt gtc aca gag cag gac age aag gac age accPro Arg Glu Ala Lys Val Gin Trp Lys Val Asp Asn Ala Leu Gin Ser 170 175 180 ggt aac tee cag gag agt gtc aca gag cag gac age aag gac age acc
Gly Asn Ser Gin Glu Ser Val Thr Glu Gin Asp Ser Lys Asp Ser Thr 185 190 195 tac age etc age age acc ctg aeg ctg age aaa gca gac tac gag aaaGly Asn Ser Gin Glu Ser Val Thr Glu Gin Asp Ser Lys Asp Ser Thr 185 190 195 tac age etc age age acc ctg aeg ctg age aaa gca gac tac gag aaa
Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys Ala Asp Tyr Glu Lys 200 205 210 cac aaa gtc tac gee tgc gaa gtc acc cat cag ggc ctg age teg cccTyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys Ala Asp Tyr Glu Lys 200 205 210 cac aaa gtc tac gee tgc gaa gtc acc cat cag ggc ctg age teg ccc
His Lys Val Tyr Ala Cys Glu Val Thr His Gin Gly Leu Ser Ser Pro 215 220 225 gtc aca aag age ttc aac agg gga gag tgt tagagggegg atcccccggg Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 12- 142769-序列表.doc 201021828 230 235 ctgcaggaat tcgatatcaa gcttatcgat accgtcgacc tcgagggg 884 <210> 14 <211〉 239 <212〉 PRT <213〉智人 <400〉 14His Lys Val Tyr Ala Cys Glu Val Thr His Gin Gly Leu Ser Ser Pro 215 220 225 gtc aca aag age ttc aac agg gga gag tgt tagagggegg atcccccggg Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 12- 142769 - Sequence Listing.doc 201021828 230 235 ctgcaggaat tcgatatcaa gcttatcgat accgtcgacc tcgagggg 884 <210> 14 <211> 239 <212> PRT <213> Homo sapiens <400> 14
Met Arg Leu Pro Ala Gin Leu Leu Gly Leu Leu Met Leu Trp Val Pro 15 10 15Met Arg Leu Pro Ala Gin Leu Leu Gly Leu Leu Met Leu Trp Val Pro 15 10 15
Gly Ser Ser Gly Asp Val Val Met Thr Gin Ser Pro Leu Ser Leu Pro 20 25 30Gly Ser Ser Gly Asp Val Val Met Thr Gin Ser Pro Leu Ser Leu Pro 20 25 30
Val Thr Leu Gly Gin Pro Ala Ser lie Ser Cys Arg Ser Ser Gin Ser 35 40 45Val Thr Leu Gly Gin Pro Ala Ser lie Ser Cys Arg Ser Ser Gin Ser 35 40 45
Leu Val Tyr Thr Asp Gly Asn Thr Ser Leu Asn Trp Phe Gin Gin Arg 50 55 60Leu Val Tyr Thr Asp Gly Asn Thr Ser Leu Asn Trp Phe Gin Gin Arg 50 55 60
Pro Gly Gin Ser Pro Arg Arg Leu lie Tyr Lys Val Ser Asn Trp Asp 65 70 75 80Pro Gly Gin Ser Pro Arg Arg Leu lie Tyr Lys Val Ser Asn Trp Asp 65 70 75 80
Ser Gly Val Pro Asp Ser Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe 85 90 95Ser Gly Val Pro Asp Ser Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe 85 90 95
Thr Leu Lys lie Ser Arg Val Glu Ala Glu Asn Val Gly Val Tyr Tyr 100 105 110Thr Leu Lys lie Ser Arg Val Glu Ala Glu Asn Val Gly Val Tyr Tyr 100 105 110
Cys Met Gin Gly Thr His Trp Pro Phe Thr Phe Gly Gly Gly Thr Lys 115 120 125Cys Met Gin Gly Thr His Trp Pro Phe Thr Phe Gly Gly Gly Thr Lys 115 120 125
Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe Pro 130 135 140Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe Pro 130 135 140
Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys Leu 145 150 155 160Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys Leu 145 150 155 160
Leu Asn Asn Phe Tyr Pro Arg Glu Ala Lys Val Gin Trp Lys Val Asp 165 170 175Leu Asn Asn Phe Tyr Pro Arg Glu Ala Lys Val Gin Trp Lys Val Asp 165 170 175
Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin Asp 180 185 190Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin Asp 180 185 190
Ser Lys Asp Ser Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys 195 200 205Ser Lys Asp Ser Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys 195 200 205
Ala Asp Tyr Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His Gin 210 215 220Ala Asp Tyr Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His Gin 210 215 220
Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 225 230 235 <210> 15 <211〉 1016 <212〉 DNA <213〉智人 <220〉Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 225 230 235 <210> 15 <211> 1016 <212> DNA <213> Homo sapiens <220〉
<221〉 CDS <222〉 (178)...(899) <400> 15 cacacaggaa acagctatga ccatgattac gccaagcgcg caattaaccc tcactaaagg 60 gaacaaaagc tggagctcca ccgcggtggc ggccgctcta gcccggctgg agcacgagga 120 cactgacacg gactgaagga gtagaaagag ctacaacagg caggcagggg cagcaag atg 180<221> CDS <221> (178)...(899) <400> 15 cacacaggaa acagctatga ccatgattac gccaagcgcca caattaaccc tcactaaagg 60 gaacaaaagc tggagctcca ccgcggtggc ggccgctcta gcccggctgg agcacgagga 120 cactgacacg gactgaagga gtagaaagag ctacaacagg caggcagggg cagcaag atg 180
Met gtg ttg cag acc cag gtc ttc att tct ctg ttg etc tgg ate tet ggt 228Met gtg ttg cag acc cag gtc ttc att tct ctg ttg etc tgg ate tet ggt 228
Val Leu Gin Thr Gin Val Phe lie Ser Leu Leu Leu Trp lie Ser Gly 5 10 15 gcc aac ggg gac ate gtg atg acc cag tct cca gac tcc ctg get gtg 276Val Leu Gin Thr Gin Val Phe lie Ser Leu Leu Leu Trp lie Ser Gly 5 10 15 gcc aac ggg gac ate gtg atg acc cag tct cca gac tcc ctg get gtg 276
Ala Asn Gly Asp lie Val Met Thr Gin Ser Pro Asp Ser Leu Ala Val 20 25 30 tct ctg ggc gag egg gcc acc ate aac tgc aag tcc age cag ggt gtt 324Ala Asn Gly Asp lie Val Met Thr Gin Ser Pro Asp Ser Leu Ala Val 20 25 30 tct ctg ggc gag egg gcc acc ate aac tgc aag tcc age cag ggt gtt 324
Ser Leu Gly Glu Arg Ala Thr lie Asn Cys Lys Ser Ser Gin Gly Val 35 40 45 tta tac age tcc aac aat aag aac tac tta get tgg tac cag cag aaa 372Ser Leu Gly Glu Arg Ala Thr lie Asn Cys Lys Ser Ser Gin Gly Val 35 40 45 tta tac age tcc aac aat aag aac tac tta get tgg tac cag cag aaa 372
Leu Tyr Ser Ser Asn Asn Lys Asn Tyr Leu Ala Trp Tyr Gin Gin Lys 50 55 60 65 cca gga cag cca cct aag ctg etc att tac tgg gca tct acc egg gaa 420 -13· 142769-序列表.doc 201021828Leu Tyr Ser Ser Asn Asn Lys Asn Tyr Leu Ala Trp Tyr Gin Gin Lys 50 55 60 65 cca gga cag cca cct aag ctg etc att tac tgg gca tct acc egg gaa 420 -13· 142769-sequence table.doc 201021828
Pro Gly Gin Pro Pro Lys Leu Leu lie Tyr Trp Ala Ser Thr Arg Glu 70 75 80 tcc ggg gtc cct gac cga ttc agt ggc age ggg tet ggg aca gat ttc 468Pro Gly Gin Pro Pro Lys Leu Leu lie Tyr Trp Ala Ser Thr Arg Glu 70 75 80 tcc ggg gtc cct gac cga ttc agt ggc age ggg tet ggg aca gat ttc 468
Ser Gly Val Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe 85 90 95 act etc acc ate age age ctg cag get gaa gat gtg gca gtt tat ttc 516Ser Gly Val Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe 85 90 95 act etc acc ate age age ctg cag get gaa gat gtg gca gtt tat ttc 516
Thr Leu Thr lie Ser Ser Leu Gin Ala Glu Asp Val Ala Val Tyr Phe 100 105 110 tgt cag caa tat tat gtt agt ccg etc act ttc ggc gga ggg acc aag 564Thr Leu Thr lie Ser Ser Leu Gin Ala Glu Asp Val Ala Val Tyr Phe 100 105 110 tgt cag caa tat tat gtt agt ccg etc act ttc ggc gga ggg acc aag 564
Cys Gin Gin Tyr Tyr Val Ser Pro Leu Thr Phe Gly Gly Gly Thr Lys 115 120 125 gtg gag ate aaa cga act gtg get gca cca tet gtc ttc ate ttc ccg 612Cys Gin Gin Tyr Tyr Val Ser Pro Leu Thr Phe Gly Gly Gly Thr Lys 115 120 125 gtg gag ate aaa cga act gtg get gca cca tet gtc ttc ate ttc ccg 612
Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe Pro 130 135 140 145 cca tet gat gag cag ttg aaa tet gga act gee tet gtt gtg tgc ctg 660Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe Pro 130 135 140 145 cca tet gat gag cag ttg aaa tet gga act gee tet gtt gtg tgc ctg 660
Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys Leu 150 155 160 ctg aat aac ttc tat ccc aga gag gee aaa gta cag tgg aag gtg gat 708Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys Leu 150 155 160 ctg aat aac ttc tat ccc aga gag gee aaa gta cag tgg aag gtg gat 708
Leu Asn Asn Phe Tyr Pro Arg Glu Ala Lys Val Gin Trp Lys Val Asp 165 170 175 aac gee etc caa teg ggt aac tec cag gag agt gtc aca gag cag gac 756Leu Asn Asn Phe Tyr Pro Arg Glu Ala Lys Val Gin Trp Lys Val Asp 165 170 175 aac gee etc caa teg ggt aac tec cag gag agt gtc aca gag cag gac 756
Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin Asp 180 185 190 age aag gac age acc tac age etc age age acc ctg aeg ctg age aaa 804Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin Asp 180 185 190 age aag gac age acc tac age etc age age acc ctg aeg ctg age aaa 804
Ser Lys Asp Ser Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys 195 200 205 gca gac tac gag aaa cac aaa gtc tac gee tgc gaa gtc acc cat cag 852Ser Lys Asp Ser Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys 195 200 205 gca gac tac gag aaa cac aaa gtc tac gee tgc gaa gtc acc cat cag 852
Ala Asp Tyr Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His Gin 210 215 220 225 ggc ctg age teg ccc gtc aca aag age ttc aac agg gga gag tgt ta 899Ala Asp Tyr Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His Gin 210 215 220 225 ggc ctg age teg ccc gtc aca aag age ttc aac agg gga gag tgt ta 899
Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 230 235 240 gagggeggat cccccgggct gcaggaattc gatatcaagc ttatcgatac cgtcgacctc 959 gagggggggc ccggtaccca attcgcccta tagtgagteg tattaegege gctcact 1016 <210〉 16 <211> 240 <212〉 PRT <213〉智人 <400> 16Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 230 235 240 gagggeggat cccccgggct gcaggaattc gatatcaagc ttatcgatac cgtcgacctc 959 gagggggggc ccggtaccca attcgcccta tagtgagteg tattaegege gctcact 1016 <210> 16 <211> 240 <212> PRT <213 〉智智<400> 16
Met Val Leu Gin Thr Gin Val Phe lie Ser Leu Leu Leu Trp lie Ser 15 10 15Met Val Leu Gin Thr Gin Val Phe lie Ser Leu Leu Leu Trp lie Ser 15 10 15
Gly Ala Asn Gly Asp lie Val Met Thr Gin Ser Pro Asp Ser Leu Ala 20 25 30Gly Ala Asn Gly Asp lie Val Met Thr Gin Ser Pro Asp Ser Leu Ala 20 25 30
Val Ser Leu Gly Glu Arg Ala Thr lie Asn Cys Lys Ser Ser Gin Gly 35 40 45Val Ser Leu Gly Glu Arg Ala Thr lie Asn Cys Lys Ser Ser Gin Gly 35 40 45
Val Leu Tyr Ser Ser Asn Asn Lys Asn Tyr Leu Ala Trp Tyr Gin Gin 50 55 60Val Leu Tyr Ser Ser Asn Asn Lys Asn Tyr Leu Ala Trp Tyr Gin Gin 50 55 60
Lys Pro Gly Gin Pro Pro Lys Leu Leu lie Tyr Trp Ala Ser Thr Arg 65 70 75 80Lys Pro Gly Gin Pro Pro Lys Leu Leu lie Tyr Trp Ala Ser Thr Arg 65 70 75 80
Glu Ser Gly Val Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp 85 90 95Glu Ser Gly Val Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp 85 90 95
Phe Thr Leu Thr lie Ser Ser Leu Gin Ala Glu Asp Val Ala Val Tyr 100 105 110Phe Thr Leu Thr lie Ser Ser Leu Gin Ala Glu Asp Val Ala Val Tyr 100 105 110
Phe Cys Gin Gin Tyr Tyr Val Ser Pro Leu Thr Phe Gly Gly Gly Thr 115 120 125Phe Cys Gin Gin Tyr Tyr Val Ser Pro Leu Thr Phe Gly Gly Gly Thr 115 120 125
Lys Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe 130 135 140Lys Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe 130 135 140
Pro Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys 145 150 155 160Pro Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys 145 150 155 160
Leu Leu Asn Asn Phe Tyr Pro Arg Glu Ala Lys Val Gin Trp Lys Val 165 170 175Leu Leu Asn Asn Phe Tyr Pro Arg Glu Ala Lys Val Gin Trp Lys Val 165 170 175
Asp Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin -14-Asp Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin -14-
142769·序列表.doc 201021828 180 185 190142769 · Sequence Listing.doc 201021828 180 185 190
Asp Ser Lys Asp Ser Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser 195 200 205Asp Ser Lys Asp Ser Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser 195 200 205
Lys Ala Asp Tyr Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His 210 215 220Lys Ala Asp Tyr Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His 210 215 220
Gin Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 225 230 235 240 <210〉 17 <211> 203 <212> PRT <213〉智人 <400> 17Gin Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 225 230 235 240 <210> 17 <211> 203 <212> PRT <213> Homo sapiens <400>
Met Lys His Leu Trp Phe Phe Leu Leu Leu Val Ala Ala Pro Arg Trp 15 10 15Met Lys His Leu Trp Phe Phe Leu Leu Leu Val Ala Ala Pro Arg Trp 15 10 15
Val Leu Ser Gin Val Gin Leu Gin Glu Ser Gly Pro Gly Leu Val Lys 20 25 30Val Leu Ser Gin Val Gin Leu Gin Glu Ser Gly Pro Gly Leu Val Lys 20 25 30
Pro Ser Glu Thr Leu Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Val 35 40 45Pro Ser Glu Thr Leu Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Val 35 40 45
Ser Ser Gly Gly Tyr Tyr Trp Ser Trp lie Arg Gin Pro Pro Gly Lys 50 55 60Ser Ser Gly Gly Tyr Tyr Trp Ser Trp lie Arg Gin Pro Pro Gly Lys 50 55 60
Gly Leu Glu Trp lie Gly Tyr He Tyr Tyr Ser Gly Gly Thr Asn Tyr 65 70 75 80Gly Leu Glu Trp lie Gly Tyr He Tyr Tyr Ser Gly Gly Thr Asn Tyr 65 70 75 80
Asn Pro Ser Leu Lys Ser Arg Val Thr lie Ser Val Asp Thr Ser Lys 85 90 95Asn Pro Ser Leu Lys Ser Arg Val Thr lie Ser Val Asp Thr Ser Lys 85 90 95
Asn Gin Phe Ser Leu Lys Leu Thr Ser Val Thr Ala Ala Asp Thr Ala 100 105 110Asn Gin Phe Ser Leu Lys Leu Thr Ser Val Thr Ala Ala Asp Thr Ala 100 105 110
Val Tyr Tyr Cys Ala Arg Glu Ser Gly Tyr Cys Thr Asn Val Ala Cys 115 120 125Val Tyr Tyr Cys Ala Arg Glu Ser Gly Tyr Cys Thr Asn Val Ala Cys 115 120 125
Phe Pro Asp Ala Phe Asp lie Trp Gly Gin Gly Thr Met Val Thr Val 130 135 140Phe Pro Asp Ala Phe Asp lie Trp Gly Gin Gly Thr Met Val Thr Val 130 135 140
Ser Ser Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro Ser 145 150 155 160Ser Ser Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro Ser 145 150 155 160
Ser Lys Ser Thr Ser Gly Gly Thr Ala Ala Leu Gly Cys Leu Val Lys 165 170 175Ser Lys Ser Thr Ser Gly Gly Thr Ala Ala Leu Gly Cys Leu Val Lys 165 170 175
Asp Tyr Phe Pro Glu Pro Val Thr Val Ser Trp Asn Ser Gly Ala Leu 180 185 190Asp Tyr Phe Pro Glu Pro Val Thr Val Ser Trp Asn Ser Gly Ala Leu 180 185 190
Thr Ser Gly Val His Thr Phe Pro Ala Val Leu 195 200 <210> 18 <211〉 239 <212〉 PRT <213〉智人 <400> 18Thr Ser Gly Val His Thr Phe Pro Ala Val Leu 195 200 <210> 18 <211> 239 <212> PRT <213> Homo sapiens <400> 18
Met Arg Leu Pro Ala Gin Leu Leu Gly Leu Leu Met Leu Trp Val Pro 15 10 15Met Arg Leu Pro Ala Gin Leu Leu Gly Leu Leu Met Leu Trp Val Pro 15 10 15
Gly Ser Ser Gly Asp Val Val Met Thr Gin Ser Pro Leu Ser Leu Pro 20 25 30Gly Ser Ser Gly Asp Val Val Met Thr Gin Ser Pro Leu Ser Leu Pro 20 25 30
Val Thr Leu Gly Gin Pro Ala Ser lie Ser Cys Arg Ser Ser Gin Ser 35 40 45Val Thr Leu Gly Gin Pro Ala Ser lie Ser Cys Arg Ser Ser Gin Ser 35 40 45
Leu Val Tyr Thr Asp Gly Asn Thr Ser Leu Asn Trp Phe Gin Gin Arg 50 55 60Leu Val Tyr Thr Asp Gly Asn Thr Ser Leu Asn Trp Phe Gin Gin Arg 50 55 60
Pro Gly Gin Ser Pro Arg Arg Leu lie Tyr Lys Val Ser Asn Trp Asp 65 70 75 80Pro Gly Gin Ser Pro Arg Arg Leu lie Tyr Lys Val Ser Asn Trp Asp 65 70 75 80
Ser Gly Val Pro Asp Ser Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe 85 90 95Ser Gly Val Pro Asp Ser Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe 85 90 95
Thr Leu Lys lie Ser Arg Val Glu Ala Glu Asn Val Gly Val Tyr Tyr 100 105 110Thr Leu Lys lie Ser Arg Val Glu Ala Glu Asn Val Gly Val Tyr Tyr 100 105 110
Cys Met Gin Gly Thr His Trp Pro Phe Thr Phe Gly Gly Gly Thr Lys 115 120 125Cys Met Gin Gly Thr His Trp Pro Phe Thr Phe Gly Gly Gly Thr Lys 115 120 125
Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe Pro 130 135 140Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe Pro 130 135 140
Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys Leu 145 150 155 160Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys Leu 145 150 155 160
Leu Asn Asn Phe Tyr Pro Arg Glu Ala Lys Val Gin Trp Lys Val Asp 165 170 175Leu Asn Asn Phe Tyr Pro Arg Glu Ala Lys Val Gin Trp Lys Val Asp 165 170 175
Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin Asp 180 185 190Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin Asp 180 185 190
Ser Lys Asp Ser Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys 195 200 205 15- 142769-序列表.doc 201021828Ser Lys Asp Ser Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys 195 200 205 15- 142769 - Sequence Listing.doc 201021828
Ala Asp Tyr Glu Lys His Lys Val T-yr Ala Cys Glu Val Thr His Gin 210 215 220Ala Asp Tyr Glu Lys His Lys Val T-yr Ala Cys Glu Val Thr His Gin 210 215 220
Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 225 230 235 <210〉 19 <211> 240 <212〉 PRT <213〉智人 <400> 19Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 225 230 235 <210> 19 <211> 240 <212> PRT <213> Homo sapiens <400>
Met Val Leu Gin Thr Gin Val Phe He Ser Leu Leu Leu Trp lie Ser 15 10 15Met Val Leu Gin Thr Gin Val Phe He Ser Leu Leu Leu Trp lie Ser 15 10 15
Gly Ala Asn Gly Asp lie Val Met Thr Gin Ser Pro Asp Ser Leu Ala 20 25 30Gly Ala Asn Gly Asp lie Val Met Thr Gin Ser Pro Asp Ser Leu Ala 20 25 30
Val Ser Leu Gly Glu Arg Ala Thr I He Asn Cys Lys Ser Ser Gin Gly 35 40 45Val Ser Leu Gly Glu Arg Ala Thr I He Asn Cys Lys Ser Ser Gin Gly 35 40 45
Val Leu Tyr Ser Ser Asn Asn Lys Asn Tyr Leu Ala Trp Tyr Gin Gin 50 55 60Val Leu Tyr Ser Ser Asn Asn Lys Asn Tyr Leu Ala Trp Tyr Gin Gin 50 55 60
Lys Pro Gly Gin Pro Pro Lys Leu Leu lie Tyr Trp Ala Ser Thr Arg 65 70 75 80Lys Pro Gly Gin Pro Pro Lys Leu Leu lie Tyr Trp Ala Ser Thr Arg 65 70 75 80
Glu Ser Gly Val Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp 85 90 95Glu Ser Gly Val Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp 85 90 95
Phe Thr Leu Thr lie Ser Ser Leu GUn Ala Glu Asp Val Ala Val Tyr 100 105 110Phe Thr Leu Thr lie Ser Ser Leu GUn Ala Glu Asp Val Ala Val Tyr 100 105 110
Phe Cys Gin Gin Tyr Tyr Val Ser Paro Leu Thr Phe Gly Gly Gly Thr 115 120 125Phe Cys Gin Gin Tyr Tyr Val Ser Paro Leu Thr Phe Gly Gly Gly Thr 115 120 125
Lys Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe 130 135 140Lys Val Glu lie Lys Arg Thr Val Ala Ala Pro Ser Val Phe lie Phe 130 135 140
Pro Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys 145 150 155 160Pro Pro Ser Asp Glu Gin Leu Lys Ser Gly Thr Ala Ser Val Val Cys 145 150 155 160
Leu Leu Asn Asn Phe Tyr Pro Arg GIlu Ala Lys Val Gin Trp Lys Val 165 170 175Leu Leu Asn Asn Phe Tyr Pro Arg GIlu Ala Lys Val Gin Trp Lys Val 165 170 175
Asp Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin 180 185 190Asp Asn Ala Leu Gin Ser Gly Asn Ser Gin Glu Ser Val Thr Glu Gin 180 185 190
Asp Ser Lys Asp Ser Thr Tyr Ser L^u Ser Ser Thr Leu Thr Leu Ser 195 200 205Asp Ser Lys Asp Ser Thr Tyr Ser L^u Ser Ser Thr Leu Thr Leu Ser 195 200 205
Lys Ala Asp Tyr Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His 210 215 220Lys Ala Asp Tyr Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His 210 215 220
Gin Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 225 230 235 240 16· 142769-序列表』0(:Gin Gly Leu Ser Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 225 230 235 240 16· 142769 - Sequence Listing 』0 (:
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US12/195,208 US20090068098A1 (en) | 2007-08-20 | 2008-08-20 | Antibodies and related molecules that bind to 58p1d12 proteins |
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US15322509P | 2009-02-17 | 2009-02-17 | |
TW98107574 | 2009-03-09 | ||
TW98128076A TW201021828A (en) | 2008-08-20 | 2009-08-20 | Antibodies and related molecules that bind to 58P1D12 proteins |
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