NZ728372B2 - Human-derived anti-huntingtin (htt) antibodies and uses thereof - Google Patents
Human-derived anti-huntingtin (htt) antibodies and uses thereof Download PDFInfo
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- NZ728372B2 NZ728372B2 NZ728372A NZ72837215A NZ728372B2 NZ 728372 B2 NZ728372 B2 NZ 728372B2 NZ 728372 A NZ728372 A NZ 728372A NZ 72837215 A NZ72837215 A NZ 72837215A NZ 728372 B2 NZ728372 B2 NZ 728372B2
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- A61K39/39533—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals
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- A61P25/28—Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
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- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
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- C—CHEMISTRY; METALLURGY
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- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/21—Immunoglobulins specific features characterized by taxonomic origin from primates, e.g. man
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- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
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- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
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- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
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- C07K2317/565—Complementarity determining region [CDR]
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- C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
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- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
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- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
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- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6893—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids related to diseases not provided for elsewhere
- G01N33/6896—Neurological disorders, e.g. Alzheimer's disease
Abstract
Provided are novel human-derived anti-huntingtin (HTT) antibodies and biotechnological derivatives thereof, preferably capable of binding mutated and/or aggregated HTT species and or fragments thereof, as well as methods related thereto. The human-derived anti-HTT antibodies and biotechnological derivatives can be used in pharmaceutical and diagnostic compositions for HTT targeted immunotherapy of Huntington Disease and diagnosis thereof. ivatives can be used in pharmaceutical and diagnostic compositions for HTT targeted immunotherapy of Huntington Disease and diagnosis thereof.
Description
Human-derived anti-Huntingtin (HTT) antibodies and uses thereof
FIELD OF THE INVENTION
The present invention generally s to antibody-based y ofHuntington's disease (HD)
associated with Huntingtin (HTT). In particular, the present invention relates to novel
molecules specifically binding to human HTT and/or antigens thereof, particularly human-
derived dies as well as HTT—binding fragments, synthetic and biotechnological
derivatives f, which are useful in the treatment of diseases and conditions induced by
such enic HTT ms.
In addition, the present invention relates to pharmaceutical and diagnostic compositions
comprising such HTT-binding les, antibodies and mimics thereof valuable both as a
diagnostic tool to identify diseases and/or disorders associated with HTT aggregation and as a
passive vaccination strategy for treating disorders related to diseases associated with HTT
amyloidosis.
BACKGROUND OF THE INVENTION
Huntington's disease (HD) is an autosomal dominant neurological amyloidogenic disease. 5 to
10 individuals per 100,000 individuals are affected with this autosomal e. However, the
prevalence in the US is much higher, studies have shown that under 200,000 US individuals
50% have the risk of developing HD, in particular 30,000 patients are registered in the US while
only 100,000 patients are registered worldwide.
HD, as shown in several studies, results from a trinucleotide CAG repeat expansion in the
Huntingtin (HTT) gene, in particular in exon 1 of the HTT gene located on chromosome 4
(MacDonald et al., Cell 72, (1993), 971—983), which is translated into a utamine (polyQ)
stretch in the HTT protein. HD occurs when the polyQ tract exceeds a threshold of 35-40
ine residues in length with a strong e correlation n repeat length and age-
of—onset of disease. This polyQ stretch leads to a misfolding and aggregation ofHTT in several
regions, 6. g. neurons and glial cells. With increasing age an accumulation of the HTT
aggregates takes place leading to degeneration of the striatal GABA-ergic neurons and cortical
pyramidal neurons. ms of the HTT misfolding and aggregation e involuntary
movements, lack of motor coordination, depression, cognitive decline such as memory loss
and/or dementia.
Since 1993 when the HD on was identified the understanding of the pathophysiology and
lar biology of the disease has significantly improved. Medicaments such as e. g.
Xenazine® (tetrabenazine, Lundbeck) a hexahydro-dimethoxy-benzoquinolizine derivative
VMAT2 inhibitor had been designed for symptomatic treatment targeting ntary muscle
movements.
In addition, gene silencing approaches such as RNA interference (RNAi) have been suggested
as potential therapies. In particular, the use ofsiRNA directed against HTT gene in a HD mouse
model (R6/2) was shown to t mutant HTT gene expression, see e.g. Warby et al., Am. J.
Hum Genet. 84 (2009), 351-366 and Olshina et al., Biological Chemistry 285 (2010), 21807-
21816. However, one limitation of this method lies in the difficulty to introduce sufficient
amount of siRNA into the target cells or tissues as shown by e. g. au et al. (Brain
Research 1338 , 112-121). Furthermore this approach may face safety liabilities as a
continued need for the expression of Huntingtin was suggested by gene deletions studies in
animal models and ed cells tsis et 05]., Nat. Genet. 26 (2000), 6; Gauthier et
al., Cell. 118 (2004), 127—138; Zuccato et al., Nat. Genet. 35 , 76—83).
Therefore, there is a need for novel therapeutic strategies an efficacious and safe therapy of
diseases associated with HTT aggregation which preferably directly interfere with amyloid
formation by mutant HTT.
This technical problem is solved by the embodiments characterized in the claims and described
further below and illustrated in the Examples and Figures.
Y OF THE INVENTION
The present invention provides anti-huntingtin (HTT) antibodies and equivalent HTT-binding
molecules for use in the prophylactic or therapeutic ent of diseases and conditions
associated with HTT amyloidosis. More specifically, therapeutically useful human-derived
antibodies as well as HTT-binding fragments, synthetic and biotechnological derivatives
thereof that recognize mutated and/or aggregated forms of HTT are provided.
In particular, experiments performed in accordance with the present invention were successful
in the recombinant cloning and production of human-derived monoclonal HTT-specific
antibodies which are specific for mutated and/or aggregated HTT species and/or fragments
thereof. The human subjects being the source of the B cells from which the cDNA encoding the
variable domain of derived monoclonal anti-HTT antibodies, respectively, have been
isolated, were healthy donors. r, in another embodiment of the present invention, the
source of the B cells from which the human-derived monoclonal anti-HTT antibodies and the
cDNA encoding their le domain, respectively, might be ed are HD patients carrying
trinucleotide CAG repeat expansion in the HTT gene and being either m-free or
displaying an unusually slow progressing or stable disease course or alternatively displaying
typical clinical es of Huntington's disease. Furthermore, as demonstrated in the Examples,
the antibodies of the present invention are capable of attenuating dendritic spine loss, improve
behavioral performance during task-specific training and e sensorimotor ability in a
mouse model of HD. Therefore, it is prudent to expect that the human monoclonal anti-HTT
antibodies ofthe present invention and derivatives thereo fbesides being non—immunogenic also
exhibit a therapeutically beneficial effect in human.
As described in the background section, hitherto the pathogenesis of HD has been tried block
by ellular approaches such as RNA interference (RNAi); see also, e.g., Stanek et al.,
Human Gene y 25 (2014), 461-474 for silencing mutant Huntingtin by Adeno-associated
Virus-mediated RNA interference. With respect to an immunotherapeutic approach the
intracellular expression of single-chain antibody fragments (scFv), z'.e. intrabodies which are
devoid of the constant region of immunoglobulins such as of the IgG class has been explored
in the last decade; see, e.g., supra and Butler et al., Prog Neurobiol. 97 (2012), for engineered
intracellular scFV and single-domain (dAb; nanobody) antibody therapies to counteract mutant
huntingtin and related toxic intracellular ns.
For example, Lecerf et al., Proc. Nat. Acad. Sci. 98 (2001), 769 describe a single-chain
variable region fragment (scFv) antibody specific for the 17 N terminal residues of huntingtin,
adjacent to the polyglutamine in HD exon 1 selected from a large human phage y. A
corresponding scFv antibody, scFv-C4 comprising a lambda le light (VL) chain (Kvam
et al., PLoS One 4 (2009), e5727; GenBank accession number 73) is described to have
some neuro—protective effect in B6.CgHDR6/1 transgenic mice, a HD mouse model, which
r ed both with severity of disease at time of injection. In order to improve the
steady-level of the intrabody and to direct N-terminal htt exon 1 (httexl) protein nts
bound by scFv-C4 to the proteasome for degradation in order to prevent them from ation
the PEST signal ce of Mouse Ornithine Decarboxylase (mODC) mODC has been fused
to the scFv-C4 antibody; see Butler and Messer, PLoS One 6 (2011), e29l99. No in vivo
experiments have been reported yet.
Also the group of Khoshnan et a]. was aiming at the development of intrabody-based
therapeutics for HD and inter alia describe anti-huntingtin scFv antibodies derived from mouse
monoclonal antibodies binding the epitopes polyglutamine ), polyproline (polyP), and
anti-C us and their effects upon ellular expression on mutant huntingtin aggregation
and toxicity; see, e.g, Ko et (11., Brain Research 56 (2001), 319-329, an et al., Proc. Nat.
Acad. Sci 99 (2002), 1002—1007 and Legleiter et al., J. Biol. Chem. 284 (2009), 21658
and their patent application US 2003/0232052 A1. In the US application, also a "human" scFv
antibody denoted "hMW9" is described to have been isolated from a human scFvs phage library
using recombinant mutant huntingtin protein. r, in contrast to mouse monoclonal
d scFv MWl, MW2, MW7 and MW8 no sequence data are ed for hMW9 which
hitherto has also never been reported again.
Colby et (1]., Proc. Nat. Acad. Sci. 342 (2004), 901-912 describe the development of a human
light chain variable domain (VL) intracellular antibody specific for the amino terminus of
Huntingtin via yeast surface display of a non-immune human antibody library. This single-
domain intrabody consisting only of the lambda light chain domain of the original scFv was
described to inhibit huntingtin ation in a cell-free in vitro assay as well as in a mammalian
cell culture model of HD; see also to corresponding international application WC 52002.
Again, no in vivo experiments have been reported yet.
Hence, apparently current intrabody based approaches either did not extend over cell-based
assays or had not been proven to be successful in animal models ofHD yet, at least not in long
term experiments. In particular, intrabodies reveal l limitations in—vz'vo such as their
potential toxicity due to intracellular/intranuclear accumulation of intrabody-antigen complexes
or the limited distribution of for example Viral delivery into large brain volumes in humans;
see, e.g., Butler et al., Prog. Neurobiol. 97 (2012), 190-204 and Sothwell et al., J. Neurosci. 29
(2009), 13589-13602. Furthermore, a general drawback of intracellular approaches is the
problem of addressing the antibody and its encoding vector DNA, respectively, to the desired
cells and, if ously d the inconvenient administration regimen, for example
intrastriatal injections; see, e.g, Snyder-Keller et al., Neuropathol. Exp. Neurol. 69 (2010),
1078—1085. In addition, general concerns with respect to gene therapy and the use of viral
vectors remain.
In contrast, the experiments performed in accordance with the present invention demonstrate
for the first time that fiJll-length IgG antibodies directed t ent epitopes of huntingtin
upon systemic administration can be successfully delivered to the brain (Example 24 and Figure
18) and that the antibodies of the present invention are capable of attenuating dendritic spine
loss, e behavioral performance during task—specific ng and enhance sensorimotor
ability in a mouse model ofHD (Example 34 and Figure 34).
Therefore, as illustrated in the Examples, the anti-HTT antibody or an HTT-binding fragment,
synthetic or biotechnological derivative thereof is preferably of the IgG class, which as
generally known and described herein comprises two identical variable heavy (VH) chain
polypeptides and two identical variable light (VL) chain polypeptides, and a constant region and
domain, respectively, 2'. e. at least one or all of the constant s of the light chain (CL) and
the heavy chain (CH1, CH2 or CH3). Put in other words, in one aspect of the present invention
recombinantly expressed bivalent antibodies c for Huntingtin and aggregated forms,
nts, peptides and derivatives thereof are ed suitable for use in the treatment or in
in viva sis of huntingtin and disorders associated therewith, which are characterized by
the presence of an immunoglobulin constant region. As described herein further below the
immunoglobulin may be of any class such as IgG, IgM, IgA IgG, or IgE and corresponding
immunoglobulin subclasses (isotypes), e.g., IgGl, IgG2, IgG3, IgG4, IgAl. ably
however, the antibody is of the human IgG subtype.
In addition, as also further explained herein, the human—derived antibodies of the present
invention are characterized by comprising at least one or more CDR of human origin, 2'. e. being
encoded by a cDNA derived from human memory B cells, and preferably n the VH and/or
VL chain are of human memory B cell origin too. The constant region or any domain thereof if
human may be of the same or different origin as the CDR(s) and the VH and/or VL chain,
respectively.
In this context, unless stated otherwise or clear from context reference herein to the antibody of
the present invention includes the human-derived dies illustrated in the Examples as well
as HTT-binding fragments, synthetic and biotechnological derivatives thereof.
As can be further noted form the prior art approaches of providing intrabodies d from
human scFvs phage library almost always schvs were obtained with a variable light chain of
Vlamda ; see Kvam et al. and Colby et al., supra. In contrast, more than 90% of the
human-derived antibodies ofthe present ion use a Vkappa light chain, which also s
to antibodies NI-302.31F11 and NI-302.35Cl illustrated in Example 24 to be capable of
penetrating the brain upon systemic administration and in Example 34 (NI-302.35C1) to have
beneficial effects on behavioral performance and motor-related tasks of mice in a HD animal
model. Therefore, it is tempting to speculate that antibodies having a Vkappa light chain might
have superior properties over antibodies having a light chain ofVlamda origin. Therefore, in a
preferred embodiment of the antibody of the present ion the variable light chain is of
Vkappa origin.
As illustrated in the Examples and Figures, the anti-HTT-antibody, HTT-binding fragment,
synthetic and biotechnological variant thereof binds to different regions of the HTT exon 1
protein which shows the "toxic" alteration as described above, 126. the expanded, unstable
leotide , as shown in the es. In particular, the antibody of the present
invention recognizes a polyP-region, a polyQ/polyP-region, the P-rich—region, the C al-
region or the N—terminal region ofHTT exon 1 protein. The epitopes of the subject antibodies
illustrated in the Examples are summarized in Figure 20. As mentioned in the ound
section, HD occurs when the polyQ tract exceeds a threshold of 35-40 glutamine residues in
length due to an aggregation of HTT. Accordingly, as shown in Example 3, aggregated and
soluble HTT exon 1 proteins with 21, 35 or 49 polyQ repeats were generated and the g
ofthe identified antibodies tested. In the following these constructs will be denoted HDX with
X being the number of Qs, e. g. HTT exon 1 with 21 polyQ repeats will be denoted HD2l.
Therefore, unless specifically indicated otherwise the term HTT means HTT exonl and the
soluble HTT refers to the corresponding GST-fusion proteins.
In a preferred embodiment of the present ion, the anti-HTT antibody or HTT-binding
fragment, synthetic or biotechnological derivative thereof is capable of preferentially binding
aggregated or misfolded forms of HTT. As bed in e. g. Legleiter et al., JBC 285 (19)
(2010), 14777—14790 and trated in the Examples the aggregation of HDX proteins in
terms of speed and seize increases with the number of Qs.
In a particularly preferred ment ofthe present invention, the anti-HTT antibody or HTT-
g fragment, synthetic or biotechnological derivative thereof demonstrates the
immunological g characteristics of an antibody characterized by any one of the variable
regions VH and/or VL as set forth in Fig. 1. Preferably, the variable region of the antibody
comprises at least one complementarity determining region (CDR) of the VH and/or VL of the
variable regions, 1'. e. pair of VH and VL chain as set forth in Fig. 1A to lAU, wherein one or
more amino acid substitutions are permitted as long as g specificity of the resultant
antibody compared to the subject antibody comprising the corresponding pair of VH and VL
chain as set forth in Fig. 1A to lAU as illustrated in the Examples, 6.g. as summarized in Figure
remains unaffected in kind, 1'. e. epitope specificity and ECso values in the same order of
magnitude for the indicated antigen, preferably in the range of at least 50%, more preferably
25% and most preferably at least 10% identical value. Preferably, one, two or all three CDRs
of the VH and VL chain contain at least one amino acid at a corresponding position which is
conserved (zle. being the same or a conservative substitute amino acid) in at least about 20%,
preferably about 40%, more ably about 50% and most preferably about 75% in the VH
and VL chain amino acid sequences, respectively, of the subject antibodies which recognize the
same type of HTT epitope, z'.e. poly-P, P-rich, C-terminus or N—terminus. For e,
sequence alignment of the subject antibodies reveals the predominant presence of one or two
tyrosines (Y) in CDRHl; see Figure 36. Similar conserved amino acid can be fied in the
other CDRs as well.
In a further embodiment of the present invention, the anti-HTT antibody or HTT-binding fragment,
synthetic or biotechnological derivative thereof is a bispecific antibody. Thus, the antibody ofthe present
invention may be capable of recognizing at least two distinct epitopes either on the same or on different
antigens. For example, while a first antigen-binding site, Le. variable domain may be specific for HTT
and ably comprises a variable region of any one of the subject antibodies rated in the
appended Examples and Figures, the second antigen—binding site may be specific for a ent,
preferably also neurotoxic protein and comprise a variable region of corresponding antibody. Hence,
n misfolding and ation is a major rk of neurodegenerative disorders such as
Alzheimer's disease (AD), Parkinson's disease (PD) and HD. Tough until recently, the consensus was
that each aggregation—prone protein was characteristic of each disorder [a—synuclein (d-syn)/PD, mutant
gtin (HTT)/HD, Tau and amyloid beta peptide/AD], growing ce indicates that aggregation-
prone proteins can actually co-aggregate and modify each other's behavior and ty, ting that
this process may also contribute to the overlap in clinical symptoms across different es; see, e.g.,
for co-aggregation of a-syn and mutant HTT Pocas et £21., Hum. Mol. Genet. 24 (2015), 1898-1907.
Thus, in one embodiment of the present invention the anti-HTT antibody or nding fragment,
synthetic or biotechnological derivative thereof is a bispecific antibody which is capable ofbinding HTT
and a protein associated with a neurodegenerative disorder, in particular in the brain, preferably ed
from the group consisting of d—synuclein, Tau, amyloid beta peptide, SODl, C9orf72, and TDP-43; see,
e.g., Blokhuis et al., Acta athol. 125 (2013), 777—794. Human—derived monoclonal antibodies
against the mentioned proteins are known in the art; see, e.g., international application W02008/081008
for anti-abeta antibody, WO2010/069603 for anti-(x-synuclein antibody; WO2012/049570 for anti-tau
antibody; W02012/080518 for anti-SOD] antibody; W02012/113775 for anti-ankyrin antibody;
/061163 for anti-TDP-43 antibody and European patent application EP 14 187 180.6 and its
subsequent international application for C9orf72. Bi- and multispecific antibodies can be generated by
methods well known in the art, for example by al recombination of monoclonal immunoglobulin
G1 fragments as described, e. g., by Brennan et al., Science. 229 (1985), 81-83, or recombinant
aneously co-expression of the appropriate heavy and light chain and corresponding g; see,
e.g., Lewis et al., Nature Biotechnology 32 (2014), 191—198; for review see, e. g., Kontermann, mAbs
4 (2012), 182-197 and mann and Brinkmann, Drug ery Today 20 (2015), 7.
Alternatively, or in addition the bi- or multi-specific antibody comprises at least a first and second
antigen-binding site, :16. variable domain specific for two distinct epitopes of HTT, preferably wherein
one or both variable regions are derived from any one of the subject dies illustrated in the
ed Examples and Figures, and as further described herein. Thus, in a preferred embodiment the
bispeciflc antibody ofthe present invention comprises two binding sites/domains of an antibody which
recognizes a polyP-region, a polyQ/polyP-region, the P—rich-region, the C terminal-region, the N-
terminal region or a conformational epitope of HTT exon 1 protein. The epitopes of the subject
antibodies illustrated in the Examples are summarized in Figure 20. Accordingly, in one embodiment
the bispecific antibody of the present invention recognizes at least two different epitopes depicted in
Figure 20 and has the combined binding specificities of the cognate subject antibody, respectively.
The antigen-binding fragment of any one the subject antibodies disclosed herein can be a single
chain Fv nt, an F(ab') fragment, an F(ab) fragment, and an F(ab')2 fragment, or any other
antigen-binding fragment. However, as mentioned in a particularly preferred embodiment, the
antibody or nding nt, synthetic or hnological derivative thereof is a human
IgG isotype antibody and comprises at least part of the constant region. Alternatively, the
dy is a chimeric human-rodent or rodentized antibody such as murine or murinized, rat
or ratinized antibody, the rodent versions being particularly useful for stic methods and
studies in animals.
Furthermore, the present invention relates to compositions comprising the antibody of the
present invention or antigen-binding fragment, synthetic or biotechnological derivative thereof
and to immunotherapeutic and immunodiagnostic methods using such compositions in the
prevention, diagnosis or treatment of diseases and/or disorders ated with HTT
amyloidosis, wherein an effective amount of the composition is administered to a patient in
need thereof.
The present invention also relates to polynucleotides encoding at least a variable region of an
globulin chain of the dy of the invention. Preferably, said variable region
comprises at least one complementarity determining region (CDR) of the VH and/or VL of the
variable region as set forth in Fig. l. Preferably, the polynucleotide is a cDNA.
ingly, the present invention also encompasses vectors comprising said polynucleotides
and host cells transformed therewith as well as their use for the production of an antibody and
equivalent binding molecules which are specific for HTT and preferably are capable of binding
d and/or aggregated HTT s or fragments f. Means and methods for the
recombinant production of dies and mimics thereof as well as methods of screening for
competing binding molecules, which may or may not be antibodies, are known in the art.
However, as described herein, in particular with respect to therapeutic ations in human
the antibody of the present invention is a human antibody in the sense that application of said
antibody is substantially free of an immune response ed against such antibody otherwise
observed for chimeric and even humanized antibodies. Hence, the present invention also relates
to the use of the cDNA, vector and host cell described herein and illustrated in the Examples
for the production of an anti-HTT antibody, in ular human-derived TT dy or
a biotechnological derivative thereof.
Furthermore, disclosed herein are compositions and methods that can be used to identify HTT,
in particular mutated and/or aggregated HTT species or fragments in vitro, 6.5;. in samples
and/or in vivo. The disclosed anti-HTT antibodies and binding fragments thereof can be used
to screen human blood, , serum, saliva, peritoneal fluid, ospinal fluid ("CSF"), and
urine for the presence of HTT and/or mutated and/or aggregated HTT species or fragments
thereof in samples, for example, by using ELISA-based or surface adapted assay. In one
embodiment the present invention relates to a method of sing or monitoring the
progression of a disease and/or disorder related to mutated and/or aggregated HTT species or
fragments f in a subject, the method comprising determining the presence of mutated,
and/or ated HTT species or fragments in a sample from the subject to be diagnosed with
at least one antibody of the present invention or an HTT-binding le and/or binding
molecules for mutated and/or aggregated HTT species or fragments having ntially the
same binding specificities of any one thereof, wherein the presence of mutated and/or
aggregated HTT species or fragments is indicative of the disorder.
Accordingly, the t invention also relates to a method of ing a pharmaceutical
composition for use in the treatment of a disorder ated with or caused by HTT aggregates,
the method comprising:
(a) expressing the cDNA of the present invention and/or culturing the host cell of the
present invention under appropriate e conditions suitable for the production of the
anti-HTT antibody, in particular human-derived anti-HTT dy or a
biotechnological derivative thereof;
(b) purifying the antibody, biotechnological derivative or globulin chain(s)
thereof from a reaction mixture and the culture, respectively, to pharmaceutical grade;
(c) admixing the antibody or biotechnological derivative thereof with a pharmaceutically
acceptable carrier.
Furthermore, in one embodiment of the present invention the anti-HTT antibodies and HTT-
binding molecules comprising at least one CDR of an dy of the present invention are
provided for the preparation of a ition for in viva ion (also called in viva g)
of or targeting a therapeutic and/or diagnostic agent to HTT, in particular mutated and/or
aggregated HTT species or fragments in the human or animal body. The methods and
compositions disclosed herein can aid in diseases and/or disorders associated with HTT
aggregation or amyloidosis and characterized, e.g., by the occurrence of aggregated forms of
HTT and can be used to monitor disease progression and therapeutic efficacy of the therapy
provided to the subject, for example in in vivo imaging related diagnostic methods. In one
embodiment the in vivo detection (imaging) comprises scintigraphy, positron emission
tomography (PET), single photon emission aphy (SPECT), near infrared (NIR) optical
imaging or magnetic resonance imaging (MRI).
Hence, it is a particular object of the present invention to provide methods for treating,
diagnosing or preventing a e and/or disorder associated with HTT amyloidosis. The
methods comprise administering an effective concentration of a preferably human antibody or
antibody derivative to the subject where the dy targets HTT or fragments thereof,
preferably mutated and/or aggregated or misfolded HTT species or fragments thereof.
In a further aspect the present invention es a peptide having an epitope ofHTT, preferably
of mutated and/or aggregated HTT species or fragments f specifically recognized by an
antibody ofthe present invention. Said peptide comprises or consists of an amino acid sequence
as indicated below in the detailed description and in the Examples or a modified sequence
thereof in which one or more amino acids are substituted, deleted and/or added. Additionally,
the present invention provides a method for diagnosing diseases and/or disorders associated
with HTT amyloidosis in a t, comprising a step of determining the ce of an
antibody that binds to said peptide in a biological sample of said subject.
Further embodiments of the present invention will be apparent from the description and
Examples that follow.
BRIEF DESCRIPTION OF THE DRAWINGS
Fig. 1: Amino acid sequences of the variable regions of human antibodies NI-302.33Cl 1, N1-
302.63F3, NI-302.35Cl, NI-302.31Fl l, NI-302.2A2, NI-302.6N9, NI-302.74Cl l,
NI-302.15F9, NI-302.39G12, NI-302.11A4, .22H9, NI-302.44D7, NI-
302.37C12, NI-302.55D8, NI-302.7A8, NI-302.78H12, NI-302.71F6, NI-302.11H6,
NI-302.3D8, NI-302.18A1, NI-302.8F1, NI-302.52C9, NI-302.46C9, NI-302.15E8,
.15D3, NI-302.64E5, NI-302.7D8, NI-302.72F10, NI-302.12H2, .8M1
and NI-302.4A6. Framework (FR) and mentarity determining regions (CDRs)
are indicated with the CDRs being underlined. The Kabat numbering scheme was used
(cf. https://www.bioinf.org.uk/abs/).
Fig. 2: Characterization ofHuntingtin (HTT) exon 1 proteins and aggregates. (A) Cloning of
GST-HttEx1Q21 (GST-HD21), GST-HttEx1Q35 (GST-HD35) and GST-HttEx1Q49
(GST-HD49) expression ucts; (B) Coomassie dye staining upon SDS-PAGE of
d GST only (lane 1), GST-HttExole2l (GST-HD21, lane 2), GST-
HttExole35 D35, lane 3) and tExonl Q49 (GST-HD49, lane 4)
proteins g good purity but also some additional bands; (C) Characterization of
in vitro HD21, HD35 and HD49 time-resolved in vitro aggregation ons by dot-
blot (left) and filter retardation analysis (right) with onal HD-l antibody as
detection antibody. Aggregation ons ofHD35 at 24 hours or HD49 reactions after
3 hours show aggregates larger than the pore size of 0.2 um detectable by HD-l in the
filter retardation assay analysis; (D) Characterization of in vitro HD35 and HD49
preparations by electron microscopy. Aggregation reactions of HD35 after 24 hours
[A, E] or HD49 ons after 1 hour [B, F], 3 hours [C, G] or 24 hours [B, H].
Overview pictures [A—D] with l’OOOX magnification and detailed structures [E-H] at
66'000X magnification.
Fig. 3: Characterization of the binding affinity of anti-polyP domain-binding antibody
.33Cll. (A) NI-302.33Cll binding affinity for different HTT species
determined by direct ELISA; (B) NI-302.33Cll ECso determinations for ated
HD49 (o), ated HD21 (I), soluble GST-HD49 (A) and GST-HDZI (V) Htt
Exon 1 proteins using direct ELISA. NI-302.33C11 antibody binds with similar ECso
values to all four species; and (C) NI-302.33C11 binding analysis to HTT aggregates
on in vitro HD21, HD35 and HD49 esolved in vitro aggregation reactions by
dot-blot (left) and filter retardation assay (right) with preferential binding to later
(aggregated) reactions of HD35 and HD49 in the dot-blot assays and aggregates of
HD35 and HD49 in the filter ation assay.
Fig. 4: Determination of NI-302.33Cll antibody binding epitope by scan of overlapping
peptides. At the top: pepscan image after NI-302.33Cll antibody hybridization.
Below: graphical overviews ofpeptides sequences bound by NI-302.33Cll antibody.
Overlapping amino acids between peptides (putative binding epitope) being
recognized by the NI- 302.33Cll antibody are highlighted in bold in the consensus
ces. The HRP-conjugated donkey anti-human IgG Fcy detection antibody alone
does not bind any linear huntingtin peptide.
Fig. 5: NI-302.33Cll binds to the polyP-domain of HTT. ECso determinations for GSTHD49
(o), BSA-coupled P-rich domain peptide (O), BSA—coupled C-terminal peptide
(I) or BSA-coupled polyP peptide (A) using direct ELISA.
Fig. 6: Characterization of the purity and integrity as well as the binding specificity of
NI-302.33Cll antibody. SDS-PAGE analysis followed by Coomassie staining of 2
and 10 ug recombinant human NI-302.33C11 anti-polyP domain antibody.
Fig. 7: Characterization of binding affinity of anti-proline—rich domain antibody N1302.63F3.
(A) NI-302.63F3 binding affinity for different HTT s determined by direct
ELISA; (B) NI-302.63F3 ECso determinations for ated HD49 (O), aggregated
HD21 (I), soluble GST-HD49 (A) and GST-HD21 (V) Htt Exon 1 proteins using
direct ELISA. .63F3 antibody has a r ECso values to all four species; (C)
Characterization of antibody NI—302.63F3 on in vitro HD21, HD35 and HD49 time-
resolved in vitro aggregation reactions by dot-blot (left) and filter retardation assay
(right) with preferential binding to huntingtin with expanded polyQ tracts
(HD49>HD35) in the dot-blot assays and aggregates of HD35 and HD49 in the filter
retardation assay.
Fig. 8: Determination of NI-302.63F3 dy binding epitope by scan of overlapping
peptides. At the top: pepscan image after NI—302.63F3 antibody hybridization. Below:
graphical overviews of peptides sequences bound by NI-302.63F3 antibody.
Overlapping amino acids between es (putative binding epitope) being
recognized by the NI-302.63F3 antibody are highlighted in bold in the consensus
sequences. The HRP-conjugated donkey anti-human IgG Fey detection antibody alone
does not bind any linear gtin peptide.
Fig. 9: NI-302.63F3 binds to the P—rich domain of HTT. ECso determinations for GST-HD49
(o), BSA-coupled P-rich domain peptide (0), BSA-coupled C-terminal peptide (I) or
BSA-coupled polyP e (A) using direct ELISA.
Fig. 10: Characterization of the purity and integrity as well as the binding specificity of
NI-302.63F3 antibody. SDS-PAGE analysis followed by sie ng of 2 and
10 ug inant human NI- 302.63F3 anti-proline-rich domain antibody.
Fig. 11: Characterization of the binding affinity of anti-C-terminal domain-binding antibody
NI 302.35Cl. (A) NI-302.35Cl binding affinity for different HTT species determined
by direct ELISA; (B) .35Cl ECso determinations for aggregated HD49 (O),
aggregated HD21 (I), soluble GST-HD49 (A) and GST-HD21 (V) Htt Exon 1
proteins using direct ELISA; (C) Characterization ofantibody NI-302.35C1 on in vitro
HD2l, HD35 and HD49 time-resolved in vitro aggregation reactions by dot-blot (left)
and filter retardation assay (right) with preferential binding to later (aggregated)
reactions of HD35 and HD49 in the dot-blot assays and aggregates ofHD35 and HD49
in the filter retardation assay.
Fig. 12: NI—302.35Cl binds to the BSA-coupled C-terminal domain peptide of HTT. ECSO
determinations for GST-HD49 (o), BSA—coupled P-rich domain peptide (0), BSA-
coupled C-terminal e (I) or BSA-coupled polyP e (A) using direct
ELISA.
Fig. 13: Characterization of the purity and ity as well as the binding specificity of
NI-302.35Cl dy. SDS-PAGE is followed by Coomassie staining of 2 and
ug recombinant human NI-302 anti-C-terminal domain antibody.
Fig. 14: Characterization ofbinding affinity of anti-N—terminal domain antibody N1302.15E8.
(A) NI-302. 15E8 binding affinity for different HTT species ined by direct
ELISA; (B) NI-302.15E8 ECso determinations for aggregated HD49 (O), aggregated
HD21 (I), soluble GST-HD49 (A) and 21 (V) Htt Exon 1 proteins using
direct ELISA. NI-302. 15E8 antibody has a higher affinity binding ECso values to non-
aggregated species.
Fig. 15: NI-302.15E8 binds to the BSA-coupled inal domain peptide of HTT. ECso
determinations for GST-HD49 (o), BSA-coupled N—terminal peptide (V) BSA-
d P-rich domain peptide (6), BSA—coupled C-terminal peptide (I) or BSA-
d polyP peptide (A) using direct ELISA.
Fig. 16: Target specificity analysis by direct ELISA. NI-302 antibodies (A) NI-302.33Cl l, (B)
NI-302.63F3, and (C) NI-302.35Cl and (D) NI-302.15E8 do not bind unrelated
ating protein targets as shown in the binding specificity analysis by direct
ELISA.
Fig. 17: Spine density is significantly reduced in hippocampal slice cultures of
Tg(HDexonl)62pr/1J transgenic mice compared to non—transgenic littermates. (A-
D) Overview of GFP positive hippocampal neurons of non-transgenic littermates (A,
C) vs. Tg(HDexonl)62pr/1J mice (B, D), g a single dendrite with the
individual spines at higher magnification (C, D). (E) Significant ion of dendritic
spine y in transgenic vs. wildtype animals (n=3-7 slices per group from 2 wt or
3 transgenic animals). (F) Attenuation of dendritic spine density loss by antibodies NI-
302.11Fll and F3 in slices oftransgenic mice. (n=8—l3 slices per group from a
total of 12 transgenic animals). Data represent the mean i SEM. *p<0.05 (MWU), #
Fig. 18: Penetration of NI-302 antibodies in the brain of R6/l animal model. (A) Mean NI-
302.31Fll (o) and NI-302.35Cl (I) plasma and brain drug levels in R6/l transgenic
animals after a single intraperitoneal injection of 50mg/kg. Data represent the mean ::
SEM. n=3 for each group; (B) Plasma and brain drug levels of individual mice after a
single dose of 50 mg/kg.
Fig. 19: EC50 determinations of human-derived HTT antibodies for aggregated HD49 (O),
aggregated HDZl (I), soluble GST-HD49 (A) and GST-HD21 (V) Htt Exon 1
proteins using direct ELISA. Some antibodies (e.g. .37C12 (I), NI-302.55D8
(J), NI-302.11A4 (F) or NI-302.22H9 (G)) seem to have preferred binding to uncut
GST-HTT n suggesting that these antibodies preferentially recognize uncut
soluble GST-HD constructs whereas some antibodies (e.g. NI-302.74Cll (C) or NI-
302.71F6 (M)) showed high affinity binding with similar EC—values to all HTT
preparation suggesting that they bind to an epitope that is similar exposed in
aggregated and uncut HTT exon 1 constructs in the ELISA assay.
Fig. 20: Characterization of binding affinity by direct ELISA. Binding y to the different
HTT proteins of human-derived HTT-specific antibodies
Fig. 21: Characterization of antibody NI—302.44D7, NI-302.37C12, NI—302.15F9 and NI-
302.71F6 on in vitro HD2l, HD35 and HD49 esolved in vitro aggregation
reactions by dot-blot (left) and filter retardation assay (right) with preferential binding
in ular NI-302.15F9 and NI-302.71F6 to later (aggregated) reactions of HD35
and HD49 in the ot assays and SDS stable aggregates of HD35 and HD49 in the
filter retardation assay.
Fig. 22: Target specificity analysis by direct ELISA. NI-302 antibodies (A) NI-302.31Fl l, (B)
N1-302.6N9, (C) NI-302.46C9, (D) NI-302.8Fl, (E) NI—302.2A2, (F) N1-302.74C11,
(G) NI-302.15F9, (H) NI—302.39Gl2, (I) NI-302.11A4, (J) NI—302.22H9, (K) NI-
302.44D7, (L) NI—302.55D8, (M) NI-302.7A8, (N) NI-302.78H12, (O) NI-302.71F6,
(P) NI-302.11H6, and (Q) NI-302.3D8 do not bind unrelated aggregating protein
targets as shown in the binding specificity analysis by direct ELISA
Fig. 23: Determination 02 antibody binding epitope by scan lapping peptides. At
the top: pepscan image afier NI-302 antibody hybridization. Below: graphical
ews of peptides sequences and NI—302 antibody binding score to the single
peptides are shown. Overlapping amino acids between peptides ive binding
epitope) being recognized by the NI-302 antibody are highlighted in gray in the
consensus sequences. The HRP-conjugated donkey uman IgG Fey ion
antibody alone does not bind any linear huntingtin peptide. (A) NI—302.3 1F11 1 ug/ml
on a 21 spot membrane, (B) NI-302.74Cll l ug/ml on a 16 spot membrane, (C) NI-
302.15F9 1 11ng on a 16 spot membrane, (D) NI-302.39G12 1 ug/ml on a 16 spot
membrane, (E) NI—302.11A4 l ug/ml on a 16 spot membrane, (F) NI-302.22H9 l
ug/ml on a 16 spot membrane, (G) NI-302.44D7 1 ug/ml on a 16 spot membrane, (H)
NI-302.37Cl2 l ug/ml on a 16 spot ne, (1) NI-302.55D8 1 ug/ml on a 16 spot
membrane, (J) NI—302.7A8 l ug/ml on a 21 spot membrane, (K) NI-302.78H12 l
ug/ml on a 16 spot membrane, (L) NI-302.71F6 1 ug/ml on a 16 spot membrane, (M)
NI-302.11H6 l ug/ml on a 21 spot ne, (N) NI-302.18A1 1 ug/ml on a 21 spot
membrane, (0) NI-302.3D8 1 ug/ml on a 21 spot membrane, (P) NI-302.46C9 1 ug/ml
on a 21 spot membrane and (Q) .52C9 l ug/ml on a 21 spot membrane, (R) NI-
302.2A2 1 ug/ml on a 21 spot membrane, (S) NI-302.15E8 1 ug/ml on a 21 spot
membrane and (T) NI-302.15D3 1 ug/ml on a 21 spot membrane.
Fig. 24: Immunohistochemical is of NI-302 antibodies reveals prominent staining of
neuronal intranuclear ions in striatal neurons of late disease stage
Tg(HDexon1)62pr/1J transgenic animals at 5 nM (74C11, 39C12, 11A4, 22H9,
78Hl2, 37Cl2, 7D8, 72F10), or SOnM trations (15F9, 71F6, 55D8, 44D7, 7A8,
64E5). Mab5492 is a commercially available N—terminal HTT antibody.
Fig. 25: Basic characterization of R6/l transgenic mouse model Tg(HDexon1)6leb/J. (A)
Survival curve, (B) body weight curve and (C) total brain wet weight during the
disease progression of this animal model. (D-H) Characterization of appearance of
neuronal intranuclear ions with disease progression in the striatum by staining
with NI-302.33Cll HTT antibody.
Fig. 26: Basic terization of B6C3-Tg(HD82Gln)81Dbo/J (Nl7l-82Q) transgenic mouse
model. (A) Survival curve, (B) body weight curve during the disease progression and
(C) total brain wet weight at end stage of this animal model. (D-F) Characterization
of ance of neuronal intranuclear inclusions with disease ssion in the
striatum by staining with Mab5492 HTT antibody.
Fig. 27: Immunohistochemical analysis with 50 nM of NI-302.33C1 1(polyP-epitope) shows
staining of neuronal intranuclear inclusions in cortical neurons of four different
Huntington Disease patients (A—D) and in striatal neurons of 270 day old, late disease
stage B6.Cg-Tg(HDexon1)6leb/J) enic animals at l (E) and 5 nM (F)
tration. No staining is detected in non-transgenic littermates (G), if primary
antibody is omitted during the staining (H) or if tissue of non-Huntington Disease
controls is stained with 50 nM ofNI-302.33Cl 1.
Fig. 28: Immunohistochemical analysis with 50 nM of NI-302.63F3 h domain epitope)
shows ng ofneuronal intranuclear ions (A-C) and staining of some es
(D) of cortical neurons of four different Huntington Disease patients (A—D) and in
striatal neurons of 270 day old, late disease stage B6.Cg-Tg(HDexon1)6leb/J)
transgenic animals at l (E) and 50 nM (F) concentration. No staining is detected in
non-transgenic littermates (G), if primary antibody is omitted during the staining (H)
or if tissue of non-Huntington Disease controls is stained with SOnM ofNI—302.63F3.
Fig. 29: Immunohistochemical is with 100 nM of .35C1 (end Exon 1 epitope)
shows staining ofneuronal intranuclear inclusions (A-C) and staining of some neurites
(D) of cortical neurons of four different Huntington Disease patients (A-D) and in
al neurons of 270 day old, late disease stage B6.Cg-Tg(HDexonl)6leb/J)
transgenic animals at l (E) and 50 nM (F) concentration. No staining is detected in
non-transgenic littermates (G), if primary antibody is omitted during the staining (H)
or if tissue of non-Huntington Disease controls is stained with lOOnM ofNI-302.35Cl.
Fig. 30: Immunohistochemical analysis with commercially ble anti-polyQ antibody
Mab1574 (1:2000, Chemicon) shows staining of neuronal intranuclear and
asmic inclusions and staining of some neurites (A, D) of cortical neurons of four
different Huntington Disease patients (A-D) and in striatal neurons ofpresymptomatic,
150 day old (E) and 270 day old (F), late disease stage B6.Cg-Tg(HDexon1)6leb/J)
transgenic animals. No staining is detected in non-transgenic littermates (G), if
primary antibody is d during the staining (H) or if tissue of non-Huntington
Disease ls is stained with Mab 1574.
Fig. 31: ECso determinations of human-derived HTT dies for ated HD49 (O),
aggregated HD21 (I), soluble 49 (A) and GST-HD21 (V) Htt Exon 1
proteins using direct ELISA. Some antibodies (e.g. NI-302.64E5 (A) or NI-302.7D8
(B)) seem to have preferred binding to uncut GST-HD49 n suggesting that these
antibodies preferentially recognize uncut soluble GST-HD constructs containing
longer polyQ repeats. Antibody NI-302.72F10 (C) shows preference to HD21
constructs and some dies (e.g. NI-302.4A6 (D), NI-302.12H2 (E) or NI-
302.8Ml (E)) showed high affinity binding with similar EC—Values to all HTT
preparation suggesting that they bind to an epitope that is similar exposed in
aggregated and uncut HTT exon 1 constructs in the ELISA assay.
Fig. 32: Characterization of antibody (A) NI-302.64E5, (B) NI-302.7D8, (C) NI-302.72F10,
(D) NI-302.4A6, (E) NI-30212H2, (F) NI-302.8Ml and (G) NI-302.33Cll (as
control) on in vitro HD21, HD35 and HD49 time-resolved in vitro aggregation
reactions by dot-blot (left) and filter retardation assay (right) with preferential binding
in particular of .64E5 and NI-302.72F10 to later (aggregated) reactions of
HD35 and/or HD49 in the dot-blot assays and SDS stable aggregates of HD35 and
HD49 in the filter retardation assay.
Fig. 33: Target specificity analysis by direct ELISA. NI-302 antibodies (A) NI-302.64E5, (B)
NI-302.7D8, (C) NI-302.72F10, (E) NI-302.12H2 and (F) NI-302.8M1 do not bind
unrelated aggregating protein targets as shown in the binding specificity analysis by
direct ELISA, except (D) NI-302.4A6 which shows some binding to p53.
Fig. 34: Study of C-terminal domain-binding antibody NI 302.35Cl on behavioral
performance during task-specific training and imotor ability in a mice model of
HD. (A) The plus—maze analysis was used to investigate the level of anxiety in the
R6/l mice. At 6 months of age, NI-302.35Cl treated R6/1 animals spend less time in
the open arms, entered the open arms less frequently and did less unprotected head
dips on the open arm compared to vehicle treated R6/l animals. Hence the NI-
302.35Cl treated R6/l mice displayed a more s phenotype, comparable to the
non—transgenic littermates. (B) NI-302.35Cl treated R6/ 1 animal showed an improved
performance in the pole test ed to vehicle treated R6/ 1 animals reaching levels
r to non-transgenic animals.
Fig. 35 Determination of NI—302 antibody binding epitope by scan of overlapping peptides.
At the top: pepscan image after NI-302 antibody hybridization. Below: graphical
overviews of peptides ces are shown. Overlapping amino acids between
peptides (putative binding epitope) being recognized by the NI-302 antibody are
shown in the sus sequence below. The HRP—conjugated donkey anti-human IgG
FC’Y detection antibody alone does not bind any linear huntingtin peptide. (A) NI-
302.64E5, (B) NI-302.7D8, (C) NI-302.72F10, (D) NI-302.4A6, (E) NI-302.12H2,
(F) NI-302.8M1 all antibodies at l ug/ml on the 21 spot membrane.
Fig. 36 Amino acid sequence ent ofthe CDRs in the VH and VL or VK chains ofNI-302
antibodies. Each sequence was checked in terms of conserved amino acids, segments,
or other motifs revealing an lation of tyrosines in the CDRs.
DETAILED DESCRIPTION OF THE ION
The present invention generally relates to immunotherapy and non-invasive methods for the
ion of diseases and/or disorders as well as conditions associated with the ce of
pathologic, often mutant and/or aggregated forms of huntingtin (HTT). More specifically, the
t invention relates to recombinant human-derived monoclonal antibodies and HTT-
binding fragments, synthetic and biotechnological derivatives thereof, which have been
ted based on sequence information obtained from selected human donor populations and
are capable of binding to such HTT isoforrns and antigens thereof. The recombinant human-
derived monoclonal antibody of the present invention is advantageously terized by
specifically binding to mutated and/or aggregated HTT species and/or fragments thereof
allowing a targeting for treatment and/or sis of ogical altered HTT species. Due to
their human derivation, the resulting recombinant antibodies of the present invention can be
reasonably expected to be efficacious and safe as therapeutic agent, and highly specific as a
diagnostic reagent for the detection of pathological HTT without giving false positives.
In addition, the present invention relates to the human monoclonal antibody and any derivatives
thereof described herein for use in the treatment of patients either alone or with other agents
utilized for symptoms ated with HTT dosis, wherein the antibody of the present
invention and any ofits derivatives is designed to be administered concomitantly with the agent
ssing side effects or sequentially before or after administration of the same. In this
context, the anti-HTT antibody and nding fragment of the present invention are
preferably substantially munogenic in human. In one ment of the present
invention, pharmaceutical compositions are provided sing both a human monoclonal
antibody of the present invention or any derivatives thereof and one or more drug utilized for
symptoms associated with HTT amyloidosis.
1. Definitions
Unless otherwise , a term as used herein is given the definition as provided in the Oxford
Dictionary of Biochemistry and Molecular Biology, Oxford sity Press, 1997, d
2000 and reprinted 2003, ISBN 0 19 850673 2.
It is to be noted that the term "a" or "an" entity refers to one or more of that entity; for example,
"an antibody," is understood to represent one or more antibodies. As such, the terms "a" (or
"an"), "one or more," and "at least one" can be used interchangeably herein.
Huntingtin (HTT), also known as IT15 is a disease gene linked to Huntington's disease (HD), a
neurodegenerative disorder characterized by loss of al neurons. It is thought that HD is
caused by an expanded, unstable trinucleotide repeat in the HTT gene, which translates as a
polyglutamine repeat in the protein product. A fairly broad range in the number of trinucleotide
repeats has been identified in normal controls, and repeat numbers in excess of 35-40 have been
described as pathological. The HTT locus (NG_009378.1; 4830 to 174286; NCBI RefSquene)
is large, spanning 180 kb and ting of 67 exons.
In this context, it has been demonstrated that an N-terminal fragment of mutant HTT, z'.e. exon
1 protein ofthe HTT gene, with an expanded CAG repeat represents the "toxic" species ofHTT
which is sufficient to cause aggregation and a progressive ogical phenotype in transgenic
mice; see, e.g., Mangiarini et al., Cell 87 (1996), 493—506 and Ross et al., Lancet Neurol. 10
(2011), 83—98, DiFiglia er al, Science 277 (1997),l990-1993, Gutekunst er al., J Neurosci 19(7)
(1999), 2522—2534.
Unless stated otherwise, by "specifically recognizing HTT", "antibody specific to/for HTT" and
"anti-HTT dy" antibodies are meant which specifically, lly, and collectively bind
to HTT, n HTT refer to different forms the HTT including but not limited to the native
form ofHTT as well as other forms ofHTT, e.g. pathologically altered HTT, such as d,
misfolded and/or aggregated HTT. Provided herein are derived antibodies selective for
filll-length and/or fragments and/or mutated, misfolded and/or aggregated forms of HTT.
If not specifically indicated otherwise, the term "HTT", is used interchangeably to specifically
refer to the different forms of huntingtin (HTT). The term "HTT" is also used to generally
identify other conformers of HTT, for example, pathologically altered forms of HTT such as
misfolded and/or aggregated forms of HTT. Furthermore, unless cally indicated
otherwise the term HTT in particular means HTT exonl and the soluble HTT refers to the
ponding GST-fiJsion proteins. The term "HTT" is also used to refer collectively to all
types and forms of HTT, such as mutated HTT. Added letters in front of the terms, e. g. HTT,
are used to indicate the organism the particular ortholog is originating from, 6.g. hHTT for
human HTT or mHTT for murine origin.
The anti-HTT antibodies disclosed herein specifically bind HTT and epitopes thereof and to
various mations of HTT and epitopes thereof. For example, disclosed herein are
antibodies that specifically bind pathologically altered HTT species or fragments thereof, such
as d, misfolded, and/or aggregated forms of HTT or fragments thereof. The term
(pathologically) mutated, misfolded, and/or aggregated/aggregates of HTT is used
hangeable to specifically refer to the aforementioned forms. The term logical)
"aggregated forms" or "aggregates" as used herein describes the products of an accumulation
or r formation due to HTT erroneous/pathological interaction with one another. These
aggregates, accumulations or cluster forms may be, substantially consist or consist ofboth HTT
and/or HTT fragments and of non-fibrillar oligomers and/or fibrillar oligomers and fibrils
thereof. As used herein, reference to an antibody tha "specifically binds", "selectively binds",
or "preferentially binds" HTT refers to an antibody that does not bind other unrelated ns.
In one example, a HTT dy disclosed herein can bind HTT or an epitope f and Show
no binding above about 2 times background for other proteins. In a preferred embodiment, the
antibody of the present invention does not substantially recognize unrelated amyloid-forming
proteins selected from the group consisting of paired helical t (PHF)-tau, TAU, alpha-
synuclein, transactive response DNA binding protein 43 (TDP43), islet amyloid polypeptide
, transthyrethin (TTR), serum amyloid A (SAA); see Examples 8, l3, l8 and 31. An
antibody that "specifically binds" or "selectively binds" a HTT conformer refers to an antibody
that does not bind all conformations of HTT, i.e., does not bind at least one other HTT
conformer. For example, disclosed herein are antibodies that can preferentially bind to d
and/or aggregated forms ofHTT both in vitro and in tissues obtained from patients with diseases
and/or disorders associated with HTT amyloidosis or with a risk to develop diseases and/or
disorders associated with HTT amyloidosis. In another embodiment of the t ion
the antibodies ofthe present invention specifically targets different regions of the HTT exon 1;
see, e.g., Figs. 5, 9, 12, 14, 15. Since the anti-HTT antibodies of the present ion have been
isolated from human subjects, they may also be called "human auto-antibodies" or "human-
derived antibodies" in order to emphasize that those antibodies were indeed expressed initially
by the subjects and are not synthetic constructs generated, for example, by means of human
immunoglobulin expressing phage libraries or xenogeneic antibodies ted in a transgenic
animal expressing part ofthe human immunoglobulin repertoire which hitherto represented one
common method for trying to provide human-like dies. On the other hand, the human-
derived antibody of the present invention may be denoted synthetic, recombinant, and/or
biotechnological in order distinguish it from human serum antibodies per se, which may be
purified via protein A or affinity column.
However, a ular advantage ofthe therapeutic approach of the present invention lies in the
fact that the dies of the present invention are derived from B cells or B memory cells
from healthy human subjects with no signs of a disease showing the occurrence of, or related
to misfolded/aggregated HTT and thus are, with a certain probability, capable ofpreventing a
ally manifest disease related to misfolded/aggregated HTT, or of diminishing the risk of
the occurrence of the clinically manifest disease, or of delaying the onset or progression of the
clinically manifest disease. Typically, the antibodies of the present invention also have already
successfully gone h c maturation, z'. e. the zation with respect to selectivity
and effectiveness in the high affinity binding to the target HTT molecules by means of somatic
variation of the variable regions of the antibody. The knowledge that such cells in Vivo, e.g. in
a human, have not been ted by means of related or other physiological proteins or cell
structures in the sense of an autoimmunological or ic on is also of great medical
importance since this signifies a considerably increased chance of successfully living through
the clinical test phases. So to speak, efficiency, acceptability and bility have already been
demonstrated before the preclinical and clinical development of the prophylactic or therapeutic
antibody in at least one human subject. It can thus be ed that the human anti-HTT
antibodies of the present invention, both its target structure-specific efficiency as therapeutic
agent and its decreased probability of side effects significantly se its clinical probability
of success.
In contrast, dies derived from cDNA library's or phage displays are artificial molecules
such as a humanized antibody which is still of murine origin and thus foreign to the human
body. Therefore the clinical utility and efficacy of the therapeutic antibodies can be d by
the production of anti-drug antibodies (ADAs), which can influence the y and
pharmacokinetics ofthe antibodies and sometimes lead to serious side effects, see 6.g. Igawa et
al. MAbs. 3 (2011), 243-252. In particular, humanized antibodies or antibodies generated with
recent human—antibody—generation technologies are in contrast to the human—derived antibodies
such as those of the present invention prone to induce an dy response and these human-
like antibodies derived from e. g. phage display such as adalimumab have been reported to
induce ADA production, see, e.g, Mansour, Br. J. Ophthalmol 91 (2007), 274-276 and Igawa
et al., MAbs. 3 (2011), 243-252. Therefore, derived antibodies which are not prone to
undesired immune response are more beneficial for the patient than artificial les derived
from libraries or displays.
The term "peptide" is understood to include the terms "polypeptide" and "protein" (which, at
times, may be used interchangeably herein) within its meaning. Similarly, fragments ofproteins
and ptides are also contemplated and may be referred to herein as "peptides".
Nevertheless, the term "peptide" preferably denotes an amino acid polymer including at least 5
contiguous amino acids, ably at least 10 contiguous amino acids, more preferably at least
contiguous amino acids, still more preferably at least 20 contiguous amino acids, and
particularly preferred at least 25 contiguous amino acids. In addition, the peptide in accordance
with present invention typically has no more than 100 contiguous amino acids, preferably less
than 80 contiguous amino acids and more preferably less than 50 contiguous amino acids.
Polzgegtides:
As used , the term "polypeptide" is intended to encompass a singular "polypeptide" as
well as plural "polypeptides," and refers to a le ed of monomers (amino acids)
linearly linked by amide bonds (also known as e . The term "polypeptide" refers
to any chain or chains oftwo or more amino acids, and does not refer to a specific length of the
product. Thus, "peptides," "dipeptides," "tripeptides, "oligopeptides, H Hprotein, H Hamino acid
chain," or any other term used to refer to a chain or chains of two or more amino acids, are
included within the definition of "polypeptide," and the term "polypeptide" may be used instead
of, or interchangeably with any of these terms.
The term "polypeptide" is also ed to refer to the ts of post-expression
modifications of the polypeptide, including without tion glycosylation, acetylation,
phosphorylation, amidation and derivatization by known protecting/blocking groups,
proteolytic cleavage, or modification by non-naturally occurring amino acids. A polypeptide
may be derived from a natural biological source or produced by recombinant technology, but
is not necessarily translated from a designated nucleic acid sequence. It may be generated in
any manner, including by chemical synthesis.
A polypeptide of the invention may be of a size of about 3 or more, 5 or more, 10 or more, 20
or more, 25 or more, 50 or more, 75 or more, 100 or more, 200 or more, 500 or more, 1,000 or
more, or 2,000 or more amino acids. Polypeptides may have a defined three-dimensional
structure, gh they do not necessarily have such structure. Polypeptides with a defined
three-dimensional structure are referred to as folded, and polypeptides which do not possess a
defined three-dimensional structure, but rather can adopt a large number of different
conformations, and are referred to as unfolded. As used herein, the term glycoprotein refers to
a n coupled to at least one carbohydrate moiety that is attached to the n Via an
oxygen-containing or a nitrogen-containing side chain of an amino acid residue, e.g., a serine
residue or an asparagine residue.
By an "isolated" polypeptide or a fragment, variant, or derivative thereof is intended a
polypeptide that is not in its natural milieu. No particular level ofpurification is required. For
example, an isolated polypeptide can be removed from its native or natural environment.
Recombinantly produced polypeptides and proteins expressed in host cells are considered
isolated for purposed of the invention, as are native or recombinant ptides which have
been separated, fractionated, or partially or substantially purified by any le technique.
"Recombinant peptides, ptides or proteins" refer to peptides, polypeptides or proteins
produced by recombinant DNA techniques, 1'. e. produced from cells, ial or mammalian,
transformed by an exogenous recombinant DNA expression construct encoding the fusion
protein including the desired peptide. Proteins or peptides expressed in most bacterial cultures
will typically be free of glycan. Proteins or ptides expressed in yeast may have a
ylation n different from that expressed in mammalian cells.
Included as polypeptides of the present invention are fragments, tives, analogs or ts
of the foregoing polypeptides and any combinations thereof as well. The terms "fragment,"
"variant," "derivative", and "analog" include peptides and polypeptides having an amino acid
sequence sufficiently similar to the amino acid sequence of the natural peptide. The term
"sufficiently similar" means a first amino acid ce that contains a sufficient or minimum
number of identical or equivalent amino acid residues relative to a second amino acid sequence
such that the first and second amino acid sequences have a common ural domain and/or
common fianctional activity. For example, amino acid ces that comprise a common
structural domain that is at least about 45%, at least about 50%, at least about 55%, at least
about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at
least about 85%, at least about 90%, at least about 91%, at least about 92%, at least about 93%,
at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about
98%, at least about 99%, or at least about 100%, identical are defined herein as sufficiently
r. Preferably, variants will be sufficiently similar to the amino acid sequence of the
red peptides ofthe present invention, in ular to HTT, variants, derivatives or analogs
of either of them. Such variants generally retain the fiinctional activity of the peptides of the
present invention. Variants include peptides that differ in amino acid sequence from the native
and wt peptide, respectively, by way of one or more amino acid deletion(s), addition(s), and/or
substitution(s). These may be naturally occurring variants as well as artificially designed ones.
Furthermore, the terms "fragment," "variant," "derivative", and "analog" when referring to
antibodies or antibody polypeptides of the t invention include any polypeptides which
retain at least some of the antigen-binding properties of the corresponding native g
molecule, antibody, or polypeptide. nts of ptides of the present invention include
proteolytic fragments, as well as deletion fragments, in addition to specific antibody fragments
discussed elsewhere herein. Variants of antibodies and dy polypeptides of the present
invention include fragments as described above, and also polypeptides with altered amino acid
sequences due to amino acid substitutions, deletions, or insertions. Variants may occur naturally
or be non-naturally occurring. Non-naturally occurring ts may be produced using art-
known mutagenesis techniques. Variant polypeptides may comprise conservative or non-
vative amino acid substitutions, deletions or additions. tives of HTT specific
binding molecules, e.g., antibodies and dy polypeptides of the present invention, are
polypeptides which have been altered so as to exhibit additional features not found on the native
polypeptide. Examples include fiasion proteins. Variant polypeptides may also be referred to
herein as "polypeptide analogs". As used herein a "derivative" of a binding molecule or
fragment thereof, an antibody, or an antibody polypeptide refers to a subject polypeptide having
one or more es chemically derivatized by reaction of a fimctional side group. Also
included as "derivatives" are those peptides which contain one or more naturally occurring
amino acid derivatives of the twenty standard amino acids. For example, 4-hydroxyproline may
be substituted for proline; 5-hydroxylysine may be substituted for lysine; 3-methylhistidine may
be substituted for ine; homoserine may be substituted for serine; and ornithine may be
substituted for lysine.
Determination ofsimilarity and/0r identity ofmolecules:
"Similarity" between two peptides is determined by comparing the amino acid sequence of one
peptide to the sequence of a second e; see Example 35 as well as Fig. 36. An amino acid
ofone peptide is similar to the corresponding amino acid of a second peptide if it is cal or
a conservative amino acid tution. Conservative substitutions e those described in
Dayhoff, M.O., ed., The Atlas of Protein Sequence and Structure 5, National Biomedical
Research Foundation, Washington, DC. (1978), and in Argos, EMBO J. 8 (1989), 779-785.
For example, amino acids belonging to one of the following groups represent conservative
changes or substitutions: -Ala, Pro, Gly, Gln, Asn, Ser, Thr; -Cys, Ser, Tyr, Thr; -Val, Ile, Leu,
Met, Ala, Phe; -Lys, Arg, His; -Phe, Tyr, Trp, His; and -Asp, Glu.
"Similarity" between two polynucleotides is determined by comparing the nucleic acid
sequence of one cleotide to the sequence of a polynucleotide. A nucleic acid of one
cleotide is similar to the corresponding nucleic acid of a second polynucleotide if it is
identical or, if the nucleic acid is part of a coding sequence, the respective triplet comprising
the nucleic acid encodes for the same amino acid or for a conservative amino acid substitution.
The determination of percent identity or similarity n two sequences is preferably
accomplished using the mathematical algorithm ofKarlin and Altschul (1993) Proc. Natl. Acad.
Sci USA 90: 5873-5877. Such an algorithm is incorporated into the BLASTn and BLASTp
programs of Altschul et a1. (1990) J. Mol. Biol. 215: 403-410 available at NCBI
(https://blast.ncbi.nlm.nih.gov/Blast.cgi).
The determination of percent identity or similarity is performed with the rd parameters
of the BLASTn programs for BLAST polynucleotide searches and BLASTp programs for
BLAST protein search, as ended on the NCBI webpage and in the "BLAST Program
Selection Guide" in respect of sequences of a specific length and composition.
BLAST cleotide searches are performed with the BLASTn program.
For the general parameters, the "Max Target Sequences" box may be set to 100, the "Short
queries" box may be ticked, the "Expect threshold" box may be set to 1000 and the "Word Size"
box may be set to 7 as recommended for short sequences (less than 20 bases) on the NCBI
webpage. For longer sequences the "Expect threshold" box may be set to 10 and the "Word
Size" box may be set to 11. For the scoring parameters the "Match/mismatch Scores" may be
set to l,-2 and the "Gap Costs" box may be set to linear. For the Filters and Masking parameters,
the "Low complexity s" box may not be ticked, the es-specific s" box may
not be ticked, the "Mask for lookup table only" box may be ticked, the "DUST Filter Settings"
may be ticked and the "Mask lower case letters" box may not be ticked. In general the "Search
for short nearly exact matches" may be used in this respect, which provides most of the above
ted settings. Further information in this respect may be found in the "BLAST Program
ion Guide" published on the NCBI webpage.
BLAST protein searches are performed with the BLASTp program. For the general parameters,
the "Max Target Sequences" box may be set to 100, the "Short queries" box may be ticked, the
"Expect threshold" box may be set to 10 and the "Word Size" box may be set to "3". For the
scoring parameters the "Matrix" box may be set to "BLOSUM62", the "Gap Costs" Box may
be set to "Existence: 11 Extension: 1", the "Compositional adjustments" box may be set to
"Conditional compositional score matrix adjustment". For the Filters and Masking parameters
the "Low complexity regions" box may not be ticked, the "Mask for lookup table only" box
may not be ticked and the "Mask lower case letters" box may not be ticked.
Modifications of both programs, e.g., in respect of the length of the searched ces, are
performed according to the recommendations in the "BLAST Program Selection Guide"
published in a HTML and a PDF version on the NCBI webpage.
Polynucleotides.‘
The term "polynucleotide" is intended to encompass a singular nucleic acid as well as plural
nucleic acids, and refers to an isolated nucleic acid le or construct, e.g., messenger RNA
(mRNA) or plasmid DNA (pDNA). A polynucleotide may se a conventional
phosphodiester bond or a non—conventional bond (e.g., an amide bond, such as found in peptide
c acids (PNA)). The term "nucleic acid" refers to any one or more nucleic acid segments,
e. g., DNA or RNA fragments, present in a polynucleotide. By "isolated" nucleic acid or
polynucleotide is intended a nucleic acid molecule, DNA or RNA, which has been removed
from its native environment. For example, a recombinant polynucleotide encoding an antibody
contained in a vector is considered isolated for the purposes of the present invention. Further
examples of an isolated polynucleotide include recombinant polynucleotides maintained in
logous host cells or purified (partially or substantially) polynucleotides in solution.
Isolated RNA molecules include in vivo or in vitro RNA transcripts of polynucleotides of the
present invention. Isolated polynucleotides or c acids according to the present invention
further include such les produced tically. In on, polynucleotide or a nucleic
acid may be or may include a regulatory element such as a er, ribosome binding site, or
a transcription ator.
As used herein, a "coding region" is a portion of c acid which consists of codons translated
into amino acids. Although a "stop codon" (TAG, TGA, or TAA) is not translated into an amino
acid, it may be considered to be part ofa coding region, but any g sequences, for example
promoters, ribosome binding sites, transcriptional terminators, introns, and the like, are not part
of a coding region. Two or more coding regions of the present invention can be present in a
single polynucleotide construct, e.g., on a single vector, or in separate polynucleotide
constructs, e.g., on separate (different) vectors. Furthermore, any vector may contain a single
coding region, or may comprise two or more coding regions, e.g, a single vector may separately
encode an immunoglobulin heavy chain variable region and an immunoglobulin light chain
variable region. In addition, a vector, polynucleotide, or c acid of the invention may
encode heterologous coding regions, either filS€d or unfiised to a nucleic acid encoding a
binding molecule, an antibody, or fragment, variant, or derivative thereof. Heterologous coding
regions include without tion lized elements or motifs, such as a secretory signal
peptide or a heterologous functional domain.
In certain embodiments, the polynucleotide or nucleic acid is DNA. In the case of DNA, a
polynucleotide comprising a nucleic acid which encodes a polypeptide normally may e a
promoter and/or other transcription or translation control elements operable associated with one
or more coding regions. An operable association is when a coding region for a gene product,
e.g, a ptide, is associated with one or more regulatory sequences in such a way as to
place sion of the gene product under the influence or control of the regulatory
sequence(s). Two DNA fragments (such as a polypeptide coding region and a promoter
associated ith) are "operable ated" or "operable linked" if ion of promoter
fimction results in the transcription of mRNA encoding the desired gene product and if the
nature of the e between the two DNA fragments does not interfere with the ability of the
sion regulatory sequences to direct the expression of the gene product or interfere with
the ability of the DNA template to be transcribed. Thus, a promoter region would be operable
associated with a nucleic acid encoding a polypeptide if the promoter was capable of effecting
transcription of that nucleic acid. The er may be a cell-specific er that directs
substantial transcription of the DNA only in predetermined cells. Other transcription control
elements, besides a promoter, for example enhancers, operators, repressors, and transcription
termination signals, can be operable associated with the polynucleotide to direct cell-specific
transcription. Suitable ers and other transcription control s are disclosed herein.
A variety of transcription control regions are known to those skilled in the art. These include,
without limitation, ription control regions which fimction in vertebrate cells, such as, but
not limited to, er and enhancer segments from cytomegaloviruses (the immediate early
promoter, in conjunction with intron—A), simian Virus 40 (the early promoter), and retroviruses
(such as Rous sarcoma Virus). Other transcription control regions include those d from
vertebrate genes such as actin, heat shock protein, bovine growth hormone and rabbit B-globin,
as well as other ces e rolling gene sion in eukaryotic cells. Additional
suitable transcription control regions include tissue-specific promoters and enhancers as well
as lymphokine-inducible promoters (e.g. inducible by interferons or interleukins).
, promoters
Similarly, a variety of ation control elements are known to those of ordinary skill in the
art. These include, but are not limited to ribosome binding sites, translation initiation and
termination codons, and elements derived from picomaviruses (particularly an internal
ribosome entry site, or IRES, also referred to as a CITE sequence).
In other ments, a polynucleotide of the present invention is RNA, for example, in the
form of messenger RNA (mRNA).
Polynucleotide and nucleic acid coding regions of the present invention may be associated with
additional coding s which encode secretory or signal peptides, which direct the secretion
of a polypeptide encoded by a cleotide of the present invention. According to the signal
hypothesis, proteins secreted by mammalian cells have a signal peptide or secretory leader
sequence which is cleaved from the mature protein once export of the growing protein chain
across the rough endoplasmic reticulum has been initiated. Those of ordinary skill in the art are
aware that polypeptides secreted by vertebrate cells lly have a signal peptide fused to the
N—terminus ofthe polypeptide, which is cleaved from the complete or "full-length" polypeptide
to produce a secreted or "mature" form of the polypeptide. In certain embodiments, the native
signal peptide, e.g., an immunoglobulin heavy chain or light chain signal peptide is used, or a
nal derivative of that sequence that retains the ability to direct the secretion of the
polypeptide that is operable associated with it. Alternatively, a heterologous mammalian signal
peptide, or a fimctional derivative thereof, may be used. For example, the wild-type leader
sequence may be substituted with the leader sequence of human tissue plasminogen activator
(TPA) or mouse B-glucuronidase.
A "binding molecule" as used in the context of the present ion s ily to
antibodies, and nts thereof, but may also refer to other non-antibody molecules that bind
to HTT including but not d to hormones, receptors, ligands, ankyrins, major
histocompatibility complex (MHC) molecules, chaperones such as heat shock proteins (HSPs)
as well as cell-cell adhesion molecules such as members of the cadherin, intergrin, C-type lectin
and immunoglobulin (Ig) superfamilies. Thus, for the sake of clarity only and without
restricting the scope of the present invention most of the following embodiments are discussed
with respect to antibodies and antibody-like molecules which represent the preferred binding
molecules for the development of therapeutic and diagnostic agents.
Antibodies:
The terms "antibody" and "immunoglobulin" are used interchangeably herein. An antibody or
immunoglobulin is a binding le which ses at least the variable domain of a heavy
chain, and normally comprises at least the variable domains of a heavy chain and a light chain.
Basic immunoglobulin structures in rate systems are relatively well understood; see, e.g.,
Harlow et al., Antibodies: A Laboratory Manual, (Cold Spring Harbor Laboratory Press, 2nd
ed. 1988).
As will be discussed in more detail below, the term "immunoglobulin" comprises various broad
classes of ptides that can be distinguished biochemically. Those skilled in the art will
appreciate that heavy chains are classified as gamma, mu, alpha, delta, or epsilon, (y, u, CL, 8,
8) with some subclasses among them (e.g, yl-y4). It is the nature of this chain that determines
the "class" of the antibody as IgG, IgM, IgA IgG, or IgE, respectively. The immunoglobulin
sses (isotypes) e.g, IgGl, IgG2, IgG3, IgG4, IgAl, etc. are well characterized and are
known to confer functional specialization. Modified ns of each of these classes and
isotypes are y discernible to the skilled artisan in view of the instant disclosure and,
accordingly, are within the scope of the instant invention. All immunoglobulin s are
y within the scope of the present invention, the following discussion will generally be
directed to the IgG class of immunoglobulin molecules. With regard to IgG, a standard
globulin molecule comprises two identical light chain polypeptides of molecular
weight approximately 23,000 Daltons, and two identical heavy chain polypeptides ofmolecular
weight 53,000-70,000. The four chains are lly joined by disulfide bonds in a "Y"
ration wherein the light chains bracket the heavy chains starting at the mouth of the "Y"
and continuing through the variable region.
Light chains are classified as either kappa or lambda (K, k). Each heavy chain class may be
bound with either a kappa or lambda light chain. In general, the light and heavy chains are
covalently bonded to each other, and the "tail" portions of the two heavy chains are bonded to
each other by covalent disulfide linkages or non-covalent linkages when the immunoglobulins
are generated either by hybridomas, B cells or genetically engineered host cells. In the heavy
chain, the amino acid sequences run from an N-terminus at the forked ends of the Y
configuration to the C-terminus at the bottom of each chain.
Both the light and heavy chains are divided into regions of structural and functional homology.
The terms "constan " and ble" are used nally. In this regard, it will be appreciated
that the le domains ofboth the light (VL) and heavy (VH) chain ns determine antigen
recognition and specificity. Conversely, the constant domains of the light chain (CL) and the
heavy chain (CH1, CH2 or CH3) confer important biological properties such as secretion,
transplacental mobility, Fc receptor binding, complement binding, and the like. By tion
the numbering of the constant region domains increases as they become more distal from the
antigen-binding site or amino-terminus of the antibody. The N—terminal portion is a variable
region and at the C—terminal portion is a constant region; the CH3 and CL s actually
comprise the carboxy-terminus of the heavy and light chain, respectively. As indicated above,
the variable region allows the antibody to selectively recognize and specifically bind epitopes
on antigens. That is, the VL domain and VH , or subset of the complementarity
determining regions (CDRs), of an antibody combine to form the variable region that defines a
three dimensional antigen-binding site. This quaternary antibody ure forms the antigen-
binding site present at the end of each arm of the Y. More specifically, the antigen—binding site
is defined by three CDRs on each of the VH and VL chains. Any antibody or immunoglobulin
fragment which contains ent structure to specifically bind to HTT is denoted herein
interchangeably as a "binding fragment" or an "immunospecific n ."
In naturally occurring antibodies, an dy comprises six ariable regions, sometimes
called "complementarity determining regions" or "CDRs" present in each antigen-binding
, which are short, non-contiguous sequences of amino acids that are specifically
positioned to form the antigen-binding domain as the antibody assumes its three dimensional
configuration in an aqueous environment. The "CDRs" are flanked by four relatively conserved
"framework" regions or "FRs" which show less inter-molecular variability. The framework
regions largely adopt a B-sheet conformation and the CDRs form loops which t, and in
some cases form part of, the B-sheet structure. Thus, framework regions act to form a scaffold
that provides for positioning the CDRs in correct orientation by inter—chain, non-covalent
interactions. The antigen-binding domain formed by the positioned CDRs defines a surface
complementary to the epitope on the immunoreactive antigen. This complementary surface
promotes the non-covalent binding of the antibody to its cognate epitope. The amino acids
comprising the CDRs and the framework regions, tively, can be readily identified for any
given heavy or light chain variable region by one of ordinary skill in the art, since they have
been precisely defined; see, "Sequences of ns of Immunological st," Kabat, E., et
al., US. Department of Health and Human Services, (1983); and Chothia and Lesk, J. Mol.
Biol, 196 (1987), 901-917, which are incorporated herein by nce in their entireties.
In the case where there are two or more definitions of a term which is used and/or accepted
within the art, the ion ofthe term as used herein is intended to include all such meanings
unless explicitly stated to the contrary. A specific example is the use of the term
"complementarity determining region" ("CDR") to describe the non-contiguous antigen
combining sites found within the variable region of both heavy and light chain polypeptides.
This particular region has been described by Kabat et al., US. Dept. of Health and Human
Services, "Sequences of Proteins of Immunological Interest" (1983) and by Chothia and Lesk,
J. Mol. Biol, 196 (1987), 901-917, which are incorporated herein by reference, where the
definitions include overlapping or subsets of amino acid residues when compared against each
other. heless, ation of either definition to refer to a CDR of an antibody or variants
thereof is intended to be within the scope ofthe term as defined and used herein. The appropriate
amino acid residues which encompass the CDRs as defined by each of the above cited
references are set forth below in Table I as a comparison. The exact residue numbers which
ass a particular CDR will vary depending on the sequence and size of the CDR. Those
skilled in the art can routinely determine which residues comprise a particular hypervariable
region or CDR of the human IgG e of antibody given the variable region amino acid
sequence of the antibody.
Table I: CDR Definitions1
Kabat Chothia
VH CDRI 31-35 26-32
VH CDR2 50-65 52-58
VH CDR3 95-102 95-102
VL CDR] 24-34 26-32
VL CDR2 50-56 50-52
VL CDR3 89-97 91-96
1Numbering of all CDR definitions in Table I is according to the numbering conventions
set forth by Kabat et al. (see below).
Kabat et al. also defined a numbering system for variable domain sequences that is applicable
to any antibody. One ofordinary skill in the art can unambiguously assign this system of "Kabat
numbering" to any variable domain sequence, t reliance on any experimental data
beyond the sequence itself. As used herein, "Kabat numbering" refers to the numbering system
set forth by Kabat et al., US. Dept. of Health and Human Services, nce of ns of
Immunological Interest" (1983). Unless otherwise specified, references to the numbering of
specific amino acid e positions in an antibody or antigen-binding fragment, variant, or
derivative thereof of the present invention are according to the Kabat numbering system, which
however is theoretical and may not equally apply to every antibody of the t invention.
For example, depending on the position of the first CDR the following CDRs might be shifted
in either direction.
Unless human-derived monoclonal antibodies or an antigen-binding fragment, synthetic or
biotechnological derivative thereof as particularly preferred embodiments of the present are
referred to, antibodies or antigen-binding fragments, immunospecific fragments, variants, or
derivatives thereof of the invention include, but are not limited to, polyclonal, monoclonal,
multispecific, human, humanized, primatized, murinized or chimeric antibodies, single chain
antibodies, e-binding fragments, e.g., Fab, Fab' and F(ab')2, Fd, Fvs, single-chain Fvs
(scFV), single-chain antibodies, de-linked Fvs (dev), fragments comprising either a VL
or VH domain, fragments produced by a Fab expression library, and anti-idiotypic (anti-Id)
antibodies (including, e.g, anti-Id antibodies to antibodies disclosed herein). ScFV molecules
are known in the art and are described, e. g., in US patent 5,892,019. Immunoglobulin or
antibody les of the invention can be of any type (e. g., IgG, IgE, IgM, IgD, IgA, and
IgY), class (e.g., IgGl, IgG2, IgG3, IgG4, IgAl and IgA2) or subclass of immunoglobulin
molecule.
In one embodiment, the antibody of the present invention is not IgM or a derivative thereof
with a alent ure. Particular, in specific applications of the present invention,
especially eutic use, Ing are less useful than IgG and other nt antibodies or
corresponding binding molecules since Ing due to their pentavalent ure and lack of
affinity maturation often show unspecific cross-reactivities and very low affinity.
In a particularly preferred embodiment, the antibody of the t invention is not a polyclonal
antibody, 1'. e. it substantially consists of one particular antibody species rather than being a
e obtained from a plasma immunoglobulin .
Antibody fragments, ing -chain antibodies, may comprise the variable region(s)
alone or in combination with the entirety or a portion of the following: hinge region, CH1, CH2,
and CH3 domains. Also included in the invention are HTT binding fragments which comprise
any combination of variable region(s) with a hinge region, CH1, CH2, and CH3 domains.
Antibodies or immunospecific fragments thereof of the present invention may be from any
animal origin ing birds and s. Preferably, the antibodies are human, murine,
donkey, rabbit, goat, guinea pig, camel, llama, horse, or chicken antibodies. In another
embodiment, the le region may be condricthoid in origin (e.g. , from ).
In one , the antibody of the present ion is a human-derived onal antibody
isolated from a human, wherein the B cell expressing the antibody is isolated from a human and
in turn the antibody or preferably the cDNA encoding the variable domain and optionally the
cDNA for the cognate constant . Optionally, the framework region of the human
antibody is aligned and adopted in accordance with the pertinent human germ line variable
region sequences in the database; see, e.g, Vbase (https://vbase.mrc-cpe.cam.ac.uk/)
(https://www.vbase2.org/) hosted by the MRC Centre for Protein Engineering (Cambridge, UK).
For example, amino acids considered to potentially deviate from the true germ line sequence
could be due to the PCR primer sequences incorporated during the cloning process. Compared
to artificially generated human-like antibodies such as single chain antibody fragments )
from a phage displayed antibody library or xenogeneic mice the human monoclonal antibody
of the present invention is characterized by (i) being obtained using the human immune
response rather than that of animal surrogates, z'.e. the antibody has been generated in response
to natural HTT in its relevant conformation in the human body, (ii) having protected the
individual or is at least significant for the ce of HTT, and (iii) since the antibody is of
human origin the risks of cross—reactivity against self—antigens is minimized. Thus, in
accordance with the present invention the terms "human monoclonal antibody", "human
monoclonal autoantibody", "human antibody" and the like are used to denote a HTT binding
molecule which is of human origin, Le. which has been isolated from a human cell such as a B
cell or hybridoma thereof or the cDNA of which has been directly cloned from mRNA of a
human cell, for example a human memory B cell. A human antibody is still "human", z'.e.
human-derived even if amino acid substitutions are made in the dy, e.g., to improve
binding characteristics. In this context, contrary to humanized antibodies and otherwise human-
like dies, see also the discussion infra, the human-derived dies of the present
invention are characterized by comprising CDRs which have been seen by human body and
therefore are substantially devoid of the risk of being immunogenic. Therefore, the antibody of
the present invention may still be denoted human—derived if at least one, preferably two and
most preferably all three CDRs of one or both the variable light and heavy chain ofthe antibody
are derived from the human antibodies illustrated herein.
In one embodiment the human-derived antibodies of the t invention comprises
heterologous regions compared to the natural occurring antibodies, 6.g. amino acid substitutions
in the framework region, constant region exogenously quCd to the variable region, different
amino acids at the C— or N- terminal ends and the like.
Antibodies derived from human immunoglobulin libraries or from animals transgenic for one
or more human immunoglobulins and that do not express endogenous immunoglobulins, as
described infra and, for example in, US patent no 5,939,598 by Kucherlapati et a]. are denoted
human-like antibodies in order guish them from truly human antibodies of the t
invention.
For example, the paring of heavy and light chains of human-like antibodies such as tic
and semi-synthetic antibodies typically ed from phage display do not necessarily reflect
the original paring as it occurred in the original human B cell. Accordingly Fab and scFv
fragments obtained from recombinant expression libraries as commonly used in the prior art
can be considered as being artificial with all possible associated effects on genicity and
stability.
In contrast, the present invention provides isolated affinity-matured antibodies from selected
human ts, which are characterized by their therapeutic utility and their nce in man.
As used herein, the term "rodentized antibody" or "rodentized immunoglobulin" refers to an
antibody comprising one or more CDRs from a human antibody of the present invention; and a
human framework region that contains amino acid substitutions and/or deletions and/or
insertions that are based on a rodent dy sequence. When ed to rodents, preferably
sequences originating in mice and rats are used, wherein the antibodies comprising such
sequences are referred to as "murinized" or ized" respectively. The human
immunoglobulin providing the CDRs is called the "paren " or "acceptor" and the rodent
dy providing the framework changes is called the "donor". Constant regions need not be
present, but if they are, they are usually ntially identical to the rodent antibody constant
regions, 1'. e. at least about 85 % to 90 %, preferably about 95 % or more identical. Hence, in
some ments, a lull-length murinized human heavy or light chain immunoglobulin
ns a mouse constant region, human CDRs, and a substantially human framework that has
a number of "murinizing" amino acid tutions. Typically, a "murinized dy" is an
dy comprising a murinized variable light chain and/or a murinized le heavy chain.
For example, a murinized antibody would not encompass a typical ic antibody, e.g.,
because the entire variable region of a chimeric antibody is non-mouse. A modified antibody
that has been "murinized" by the process of "murinization" binds to the same antigen as the
parent antibody that provides the CDRs and is usually less immunogenic in mice, as compared
to the parent antibody. The above explanations in respect of "murinized" antibodies apply
analogously for "rodentized" antibodies, such as "ratinized antibodies", wherein rat sequences
are used instead of the murine.
As used , the term "heavy chain portion" includes amino acid sequences derived from an
immunoglobulin heavy chain. A polypeptide sing a heavy chain portion comprises at
least one of: a CH1 domain, a hinge (e.g., upper, middle, and/or lower hinge ) domain, a
CH2 domain, a CH3 domain, or a variant or fragment thereof. For example, a binding
polypeptide for use in the invention may comprise a polypeptide chain comprising a CHl
domain; a polypeptide chain comprising a CH1 domain, at least a portion of a hinge domain,
and a CH2 domain; a polypeptide chain comprising a CHl domain and a CH3 domain; a
polypeptide chain comprising a CH1 domain, at least a portion of a hinge domain, and a CH3
domain, or a polypeptide chain comprising a CHl domain, at least a portion of a hinge domain,
a CH2 domain, and a CH3 domain. In another embodiment, a polypeptide of the invention
comprises a ptide chain comprising a CH3 domain. r, a binding polypeptide for
use in the invention may lack at least a portion of a CH2 domain (e. g., all or part of a CH2
domain). As set forth above, it will be understood by one of ordinary skill in the art that these
domains (e.g., the heavy chain portions) may be modified such that they vary in amino acid
sequence from the naturally occurring immunoglobulin molecule.
In certain antibodies, or antigen-binding fragments, variants, or derivatives thereof disclosed
herein, the heavy chain ns of one polypeptide chain of a multimer are identical to those
on a second ptide chain of the multimer. Alternatively, heavy chain portion-containing
monomers of the invention are not cal. For example, each monomer may se a
different target binding site, forming, for example, a ific antibody or diabody.
As used herein, the term cific" or "bifimctional" antibody molecule is an antibody
molecule that has two different epitope/antigen binding sites, and accordingly has binding
cities for two ent target epitopes. These two epitopes may be epitopes of the same
antigen or ofdifferent antigens. In contrast thereto a "bivalent antibody" may have binding sites
ofidentical antigenic specificity. Methods of making a bispecific antibody are known in the art,
6. g. chemical conjugation of two different monoclonal antibodies as illustrated in Example 36
or for example, also chemical conjugation of two antibody fragments, for example, of two Fab
nts an et al., Science 229 (1985), 81-83; Nitta et al., Eur. J. Immunol. 19 (1989),
1437—1441; Glennie et al., J. Immunol. 139 (1987), 2367-2375; Jung et al., Eur. J. Immunol.,
21 (1991), 2431-2435). Alternatively, bispecific antibodies are made recombinantly (Gruber et
al., J. Immunol. 152 (1994), 5368—5374; Kurucz et al., J. Immunol. 154 (1995), 4576-4582;
Mallender and Voss, J. Biol. Chem. 269 (1994), 199-206). Traditionally, the recombinant
production of bispecific antibodies is based on the co-expression oftwo immunoglobulin heavy
chain-light chain pairs, where the two heavy chains have different binding specificities. Because
ofthe random assortment ofheavy and light chains, a potential mixture often different antibody
ures are produced of which only one has the desired g city (Milstein and
, Nature 305 (1983), 537-540; Lanzavecchia and Scheidegger, Eur. J. Immunol. 17
, 105—111. An alternative approach involves fusing the variable domains with the d
binding specificities to heavy chain constant region including at least part of the hinge region,
CH2 and CH3 s. In one embodiment the CH1 region ning the site necessary for
light chain binding is present in at least one of the fusions. DNA encoding these fusions, and if
desired the light chains are inserted into separate expression vectors and are then co-transfected
into a suitable host organism. It is possible though to insert the coding sequences for two or all
three chains into one expression vector.
In another embodiment, the antibodies, or antigen-binding fragments, variants, or derivatives
thereof disclosed herein are composed of a single polypeptide chain such as scFvs and are to
be expressed intracellularly (intrabodies) for potential in viva therapeutic and diagnostic
applications.
The heavy chain ns of a binding polypeptide for use in the stic and treatment
methods disclosed herein may be derived from different immunoglobulin molecules. For
example, a heavy chain portion of a polypeptide may comprise a CH1 domain derived from an
IgGl molecule and a hinge region derived from an IgG3 molecule. In another example, a heavy
chain portion can comprise a hinge region derived, in part, from an IgGl molecule and, in part,
from an IgG3 molecule. In another example, a heavy chain portion can comprise a chimeric
hinge derived, in part, from an IgGl molecule and, in part, from an IgG4 molecule.
As used herein, the term "light chain portion" includes amino acid sequences derived from an
immunoglobulin light chain. Preferably, the light chain portion comprises at least one of a VL
or CL domain.
The minimum size of a peptide or polypeptide epitope for an antibody is thought to be about
four to five amino acids. Peptide or polypeptide es preferably contain at least seven, more
preferably at least nine and most preferably between at least about 15 to about 30 amino acids.
Since a CDR can recognize an antigenic peptide or polypeptide in its tertiary form, the amino
acids sing an e need not be contiguous, and in some cases, may not even be on the
same peptide chain. In the present invention, a peptide or polypeptide epitope recognized by
antibodies of the present invention contains a ce of at least 4, at least 5, at least 6, at least
7, more preferably at least 8, at least 9, at least 10, at least 15, at least 20, at least 25, or between
about 15 to about 30 contiguous or non-contiguous amino acids of HTT, in particular of a N-
terminal, polyP , P-rich region or the C-terminal region of exon 1.
By "specifically binding", or "specifically recognizing", used interchangeably , it is
generally meant that a binding le, e.g., an antibody binds to an epitope Via its antigen-
binding domain, and that the binding s some complementarity between the antigenbinding
domain and the epitope. According to this definition, an antibody is said to "specifically
bind" to an epitope when it binds to that e, Via its antigen-binding domain more readily
than it would bind to a random, unrelated epitope. The term "specificity" is used herein to
qualify the relative affinity by which a certain antibody binds to a certain e. For example,
antibody "A" may be deemed to have a higher specificity for a given epitope than antibody "B,"
or dy "A" may be said to bind to epitope "C" with a higher specificity than it has for
related epitope "D".
Where present, the term "immunological g characteristics," or other binding
characteristics of an antibody with an antigen, in all of its grammatical forms, refers to the
specificity, affinity, cross—reactivity, and other binding characteristics of an antibody.
By "preferentially binding", it is meant that the binding molecule, e.g., antibody specifically
binds to an e more readily than it would bind to a related, similar, homologous, or
analogous epitope. Thus, an antibody which "preferentially binds" to a given epitope would
more likely bind to that e than to a related epitope, even though such an antibody may
cross-react with the related epitope.
By way of non-limiting example, a binding molecule, e.g, an antibody may be considered to
bind a first epitope preferentially if it binds said first epitope with a dissociation constant (KD)
that is less than the antibody's KD for the second epitope. In another non-limiting example, an
dy may be considered to bind a first antigen preferentially if it binds the first epitope with
an affinity that is at least one order of magnitude less than the antibody's KD for the second
e. In another non-limiting example, an antibody may be considered to bind a first epitope
entially if it binds the first epitope with an y that is at least two orders of magnitude
less than the antibody's KD for the second epitope.
In another non-limiting example, a binding molecule, e.g, an antibody may be considered to
bind a first epitope preferentially if it binds the first epitope with an off rate (k(off)) that is less
than the antibody's k(off) for the second epitope. In another non-limiting example, an antibody
may be considered to bind a first epitope entially if it binds the first epitope with an
affinity that is at least one order of magnitude less than the dy's k(off) for the second
epitope. In another non-limiting example, an antibody may be considered to bind a first epitope
preferentially if it binds the first epitope with an affinity that is at least two orders of magnitude
less than the antibody's k(off) for the second epitope.
A binding molecule, e.g., an antibody or antigen—binding fragment, variant, or derivative
disclosed herein may be said to bind HTT or a nt, variant or specific conformation
thereof with an off rate (k(off)) of less than or equal to 5 x 10'2 sec'l, 10'2 sec'l, 5 x 10'3 sec‘1 or
'3 sec'l. More preferably, an antibody ofthe invention may be said to bind HTT or a fragment,
variant or specific mation thereof with an off rate (k(off)) less than or equal to 5 x 10'4
sec'l, 10'4 sec'l, 5 x 10'5 sec'l, or 10‘5 sec"1 5 x 10'6 sec'l, 10'6 sec'l, 5 x 10'7 sec"1 or 10'7 sec'l.
A binding molecule, e.g., an antibody or antigen-binding fragment, variant, or derivative
disclosed herein may be said to bind HTT or a fragment, variant or specific conformation
thereof with an on rate (k(on)) of greater than or equal to 103 M"1 sec'l, 5 X 103 M"1 sec], 104
M"1 sec"1 or 5 X 104 M"1 sec‘l. More preferably, an dy of the invention may be said to bind
HTT or a fragment, variant or specific conformation thereofwith an on rate (k(on)) greater than
or equal to 105 M"1 sec'l, 5 x 105 M‘1 sec'l, 106 M"1 sec'l, or 5 x 106 M"1 sec"1 or 107 M"1 sec'l.
A binding molecule, e.g., an antibody is said to competitively inhibit binding of a reference
antibody to a given epitope if it preferentially binds to that epitope to the extent that it blocks,
to some degree, binding of the nce antibody to the epitope. Competitive inhibition may
be determined by any method known in the art, for example, competition ELISA assays. An
antibody may be said to competitively inhibit binding of the reference antibody to a given
epitope by at least 90%, at least 80%, at least 70%, at least 60%, or at least 50%.
As used herein, the term "affinity" refers to a measure of the strength of the binding of an
individual epitope with the CDR of a binding molecule, e.g., an immunoglobulin molecule; see,
e.g., Harlow et (11., Antibodies: A tory Manual, Cold Spring Harbor Laboratory Press,
2nd ed. (1988) at pages 27—28. As used herein, the term "avidity" refers to the overall ity
ofthe complex between a population of immunoglobulins and an antigen, that is, the fiinctional
combining strength of an immunoglobulin mixture with the n; see, e.g., Harlow at pages
29-34. Avidity is related to both the affinity of individual immunoglobulin molecules in the
population with c epitopes, and also the es of the globulins and the
antigen. For example, the interaction between a bivalent monoclonal antibody and an antigen
with a highly repeating epitope structure, such as a r, would be one of high avidity. The
affinity or avidity of an antibody for an antigen can be determined experimentally using any
suitable method; see, for example, Berzofsky et al., ody-Antigen Interactions" In
Fundamental Immunology, Paul, W. E., Ed., Raven Press New York, N Y (1984), Kuby, Janis
Immunology, W. H. Freeman and Company New York, N Y , and methods described
herein. General techniques for measuring the affinity of an antibody for an n include
ELISA, RIA, and surface plasmon resonance. The ed affinity of a particular dy-
n interaction can vary if measured under different ions, 6.g. , salt concentration, pH.
Thus, measurements of affinity and other antigen-binding parameters, e.g., K13, ICso, are
preferably made with standardized solutions of antibody and antigen, and a standardized buffer.
Binding molecules, e.g., antibodies or antigen-binding fragments, variants or derivatives
thereof of the invention may also be described or specified in terms of their reactivity. As
used herein, the term "cross-reactivity" refers to the ability of an antibody, specific for one
antigen, to react with a second n; a measure ofrelatedness between two ent antigenic
substances. Thus, an antibody is cross reactive if it binds to an epitope other than the one that
induced its formation. The cross reactive epitope generally contains many of the same
complementary structural features as the inducing epitope, and in some cases, may actually fit
better than the al.
For example, certain dies have some degree of cross—reactivity, in that they bind related,
but non-identical epitopes, e.g., epitopes with at least 95%, at least 90%, at least 85%, at least
80%, at least 75%, at least 70%, at least 65%, at least 60%, at least 55%, and at least 50%
identity (as calculated using methods known in the art and described herein) to a reference
epitope. An antibody may be said to have little or no cross-reactivity if it does not bind epitopes
with less than 95%, less than 90%, less than 85%, less than 80%, less than 75%, less than 70%,
less than 65%, less than 60%, less than 55%, and less than 50% identity (as calculated using
methods known in the art and described herein) to a reference epitope. An antibody may be
deemed "highly specific" for a certain epitope, if it does not bind any other , ortholog, or
homolog of that epitope.
Binding molecules, e.g., antibodies or antigen-binding fragments, variants or derivatives
thereof of the invention may also be described or specified in terms of their binding affinity to
HTT and/or mutated, ded, and/or aggregated HTT species and/or fragments thereof.
Preferred binding affinities include those with a dissociation constant or Kd less than 5 x 10'2
M, 10'2 M, 5 x 10'3 M, 10'3 M, 5 X 10'4 M, 10'4 M, 5 x 10'5 M, 10'5 M, 5 X 10'6 M, 10'6 M, 5 x10'
7M, 10'7M, 5 X 10'8M, 10'8M, 5 x 10'9M, 10'9 M, 5 X lO'lOM, 10'“) M, 5 x 10'11 M, 10'11 M, 5
x 10‘12M, 10‘12M, 5 X 10'13 M, 10‘13M, 5 x10'14M,10'14M,5 x 10‘15M, or 10'15M.
As previously indicated, the subunit structures and three dimensional configuration of the
constant s of the various globulin classes are well known. As used herein, the
term "VH " includes the amino terminal variable domain of an immunoglobulin heavy
chain and the term "CH1 domain" es the first most amino terminal constant region
domain of an immunoglobulin heavy chain. The CH1 domain is adjacent to the VH domain and
is amino terminal to the hinge region of an immunoglobulin heavy chain molecule.
As used herein the term "CH2 domain" includes the portion of a heavy chain molecule that
extends, e.g, from about residue 244 to residue 360 of an antibody using conventional
numbering schemes (residues 244 to 360, Kabat numbering system; and residues 231-340, EU
numbering system; see Kabat EA et a]. op. cit). The CH2 domain is unique in that it is not
closely paired with another domain. Rather, two N—linked branched carbohydrate chains are
interposed between the two CH2 domains of an intact native IgG molecule. It is also well
documented that the CH3 domain extends from the CH2 domain to the C-terminal of the IgG
molecule and comprises approximately 108 residues.
As used , the term "hinge region" includes the portion of a heavy chain molecule that
joins the CH1 domain to the CH2 . This hinge region ses approximately 25
residues and is flexible, thus allowing the two N—terminal antigen—binding regions to move
independently. Hinge regions can be subdivided into three distinct domains: upper, middle, and
lower hinge domains; see Roux et al., J. Immunol. 161 (1998), 4083-4090.
As used herein the term fide bond" includes the covalent bond formed between two sulfur
atoms. The amino acid cysteine ses a thiol group that can form a disulfide bond or bridge
with a second thiol group. In most naturally occurring IgG molecules, the CH1 and CL regions
are linked by a de bond and the two heavy chains are linked by two de bonds at
positions corresponding to 239 and 242 using the Kabat numbering system (position 226 or
229, EU numbering system).
As used herein, the terms "linked", "fused" or "filSlOIl" are used interchangeably. These terms
refer to the joining together oftwo more elements or components, by whatever means including
chemical conjugation or recombinant means. An "in-frame filSlOIl" refers to the joining of two
or more polynucleotide open reading frames (ORFs) to form a continuous longer ORF, in a
manner that maintains the correct translational reading frame of the al ORFs. Thus, a
recombinant filSlOIl protein is a single protein containing two or more ts that pond
to polypeptides encoded by the original ORFs (which segments are not normally so joined in
nature). Although the reading frame is thus made continuous hout the filSCd segments,
the segments may be ally or spatially separated by, for example, in-frame linker
sequence. For example, polynucleotides encoding the CDRs of an immunoglobulin variable
region may be fused, in-frame, but be separated by a polynucleotide encoding at least one
immunoglobulin framework region or additional CDR regions, as long as the "filsed" CDRS are
co-translated as part of a continuous polypeptide.
The term ssion" as used herein refers to a process by which a gene produces a
biochemical, for example, an RNA or polypeptide. The process includes any manifestation of
the functional presence of the gene within the cell including, without limitation, gene
own as well as both transient expression and stable expression. It includes without
limitation transcription ofthe gene into messenger RNA (mRNA), er RNA (tRNA), small
n RNA ), small interfering RNA (siRNA) or any other RNA product, and the
translation of mRNA into polypeptide(s). If the final desired product is a biochemical,
expression includes the creation of that biochemical and any precursors. Expression of a gene
produces a "gene product." As used herein, a gene product can be either a nucleic acid, e.g., a
messenger RNA produced by transcription of a gene, or a polypeptide which is ated from
a transcript. Gene products bed herein further include nucleic acids with post
transcriptional modifications, e.g., enylation, or polypeptides with post translational
modifications, e.g, methylation, ylation, the addition of lipids, association with other
protein subunits, proteolytic cleavage, and the like.
As used herein, the term "sample" refers to any biological material obtained from a subject or
patient. In one aspect, a sample can comprise blood, peritoneal fluid, CSF, saliva or urine. In
other aspects, a sample can comprise whole blood, blood plasma, blood serum, B cells enriched
from blood samples, and cultured cells (e.g., B cells from a subject). A sample can also include
a biopsy or tissue sample including neural . In still other aspects, a sample can comprise
whole cells and/or a lysate of the cells. Blood samples can be collected by methods known in
the art. In one aspect, the pellet can be resuspended by vortexing at 4°C in 200 ul buffer (20
mM Tris, pH. 7.5, 0.5 % Nonidet, 1 mM EDTA, 1 mM PMSF, 0.1 M NaCl, IX Sigma Protease
Inhibitor, and IX Sigma Phosphatase Inhibitors l and 2). The suspension can be kept on ice for
min. with ittent vortexing. After spinning at 15,000 x g for 5 min at about 4°C, aliquots
of supernatant can be stored at about -70°C.
Diseases:
Unless stated otherwise, the terms "disorder" and "disease" are used interchangeably herein and
comprise any undesired physiological change in a subject, an animal, an isolated organ, tissue
or cell/cell culture.
Huntington's disease (HD) is an autosomal dominant, progressive neurodegenerative disorder
characterized by the expansion of a CAG trinucleotide repeat within the huntingtin (HTT) gene
(Huntington's Disease Collaborative Research Group, Cell 72(6) (1993), 3), wherein the
pathogenic threshold of this expansion is approximately 37 repeats, whereas fewer repeats
below this number do not result in pathogenesis, see e. g. Trottier et al., Nature 378(6555)
(1995), 403—406. The expansion of the CAG leotide repeat results in an expanded
polyglutamine (Poly-Gln, Poly-Q) tract in the amino terminus of the gtin protein (HTT),
which is associated with the aggregation ofHTT. However, the precise mechanism g to
the accumulation ofHTT and its associated symptoms has not been elucidated so far.
Studies have shown that both flanking regions of the polyglutamine (Poly-Q) tract, z'.e. amino-
terminal region consisting of an amphipathic helical targeting domain and the carboxy—
terminal region characterized by two proline tracts P region) and a leucine—proline—rich
tract (P-rich region) seem to be critical in mediating the toxicity of the mutated HTT, see 6.g.
Caron et al., PNAS 110 (2013), 14610—14615.
The ism contributing to the pathological symptoms of HD, such as hyperkinesia,
hypokinesia, mental and movement disorders including disturbances of affect and the drive,
lack of motor persistence, thoughtless and impulsive or, resignation and depression,
disorders of visual ation processing, subcortical dementia, loss of cognitive ies,
disorientation and y of speech, delusions, restlessness of the arms, legs, face, head and
the trunk, choreic inesis, dysarthria, dysphagia, anarthria, dystonias, has not been
elucidated so far. Possible mechanisms include but are not limited to a reduced flexibility of
the hinge region due to the ed Poly-Q tract of HTT as well as to proteases which lead to
the formation of different HTT fragments due to the expanded Poly-Q tract.
Since the antibodies of the present invention have been shown to be therapeutically effective in
a HD mouse model, see e.g. Example 24 and Fig. 17 as well as Example 34 and Fig. 34 and in
addition are capable of binding to HTT amyloids in tissue sections from HD patients, see e.g.
e 31 and Fig. 27-30, the derived dies and hnological derivatives
thereof are useful in both the treatment and diagnosis of HD and the above-mentioned
symptoms. Therefore, in one embodiment of the present invention the antibodies of the present
invention, binding molecules having substantially the same binding specificities of any one
thereof, the polynucleotides, the vectors or the cells of the present invention are used for
preparation of a pharmaceutical or diagnostic composition for prophylactic and/or therapeutic
treatment of HD, in particular HTT amyloidosis diseases and/or disorders, for ring
disease progression and/or treatment response, and for the diagnosis of diseases associated with
HTT amyloidosis.
Treatment.‘
As used herein, the terms "treat" or "treatment" refer to both therapeutic ent and
prophylactic or preventative measures, wherein the object is to t or slow down (lessen)
an undesired physiological change or disorder, such as the development of c ency.
Beneficial or desired clinical results e, but are not limited to, alleviation of symptoms,
diminishment of extent of disease, stabilized (z'.e., not worsening) state of disease, delay or
slowing of disease progression, amelioration or palliation of the disease state, and remission
(whether l or total), whether detectable or undetectable. "Treatment" can also mean
prolonging survival as compared to expected survival if not receiving treatment. Those in need
oftreatment include those already with the condition or disorder as well as those prone to have
the condition or disorder or those in which the manifestation of the ion or disorder is to
be prevented.
If not stated otherwise the term "drug, medicine," or "medicament" are used interchangeably
herein and shall include but are not limited to all (A) articles, medicines and preparations for
internal or external use, and any substance or mixture of substances intended to be used for
diagnosis, cure, mitigation, treatment, or prevention of disease of either man or other animals;
and (B) articles, medicines and preparations (other than food) intended to affect the structure
or any fimction of the body of man or other s; and (C) articles intended for use as a
component of any article specified in clause (A) and (B). The term "drug, medicine," or
ament" shall include the complete formula of the ation intended for use in either
man or other animals containing one or more "agents, compounds", "substances" or
"(chemical) compositions" as and in some other context also other pharmaceutically inactive
excipients as fillers, disintegrants, lubricants, glidants, binders or ensuring easy transport,
disintegration, regation, dissolution and ical availability ofthe "drug, medicine,"
" at
or "medicamen an intended target location within the body of man or other animals, e.g,
at the skin, in the stomach or the intestine. The terms "agent," "compound", or "substance" are
used interchangeably herein and shall include, in a more particular context, but are not limited
to all pharmacologically active agents, z‘.e. agents that induce a desired biological or
pharmacological effect or are investigated or tested for the capability of inducing such a
possible pharmacological effect by the methods of the present invention.
By "subject" or "individual" or "animal" or "patien " or "mammal", is meant any subject,
particularly a mammalian subject, e.g., a human patient, for whom diagnosis, prognosis,
prevention, or therapy is desired.
Pharmaceutical carriers:
Pharmaceutically acceptable carriers and administration routes can be taken from
corresponding literature known to the person skilled in the art. The pharmaceutical
compositions of the present invention can be formulated according to methods well known in
the art; see for example Remington: The Science and Practice of Pharmacy (2000) by the
University of es in Philadelphia, ISBN 0306472, Vaccine Protocols 2nd Edition by
Robinson et al., Humana Press, , New Jersey, USA, 2003; Banga, Therapeutic es
and ns: Formulation, Processing, and Delivery Systems. 2nd Edition by Taylor and
Francis. , ISBN: 8. Examples of suitable pharmaceutical carriers are well
known in the art and include phosphate buffered saline solutions, water, emulsions, such as
oil/water ons, various types of wetting agents, sterile solutions etc. Compositions
comprising such carriers can be formulated by well-known conventional methods. These
pharmaceutical compositions can be administered to the t at a suitable dose.
Administration of the suitable compositions may be ed by different ways. Examples
include administering a composition containing a pharmaceutically acceptable carrier via oral,
intranasal, rectal, topical, intraperitoneal, intravenous, uscular, aneous, subdermal,
transdermal, intrathecal, and intracranial methods. Aerosol formulations such as nasal spray
formulations include purified aqueous or other solutions of the active agent with vative
agents and isotonic agents. Such formulations are preferably adjusted to a pH and isotonic state
compatible with the nasal mucous membranes. Pharmaceutical compositions for oral
administration, such as single domain antibody molecules (e.g., "nanobodiesTM") etc. are also
envisaged in the present invention. Such oral formulations may be in , capsule, powder,
liquid or semi-so lid form. A tablet may comprise a solid carrier, such as gelatin or an adjuvant.
Formulations for rectal or vaginal administration may be presented as a suppository with a
suitable carrier; see also n er al., Nature Reviews, Drug Discovery 2(9) (2003), 727-
735. Further guidance regarding formulations that are le for s types of
administration can be found in Remington's Pharmaceutical Sciences, Mace hing
Company, Philadelphia, PA, 17th ed. (1985) and ponding updates. For a briefreview of
methods for drug ry see Langer, Science 249 (1990), 1527-1533.
11. Antibodies of the present invention
The present invention generally relates to human-derived anti-HTT dies and HTT-
binding fragments thereof, which preferably demonstrate the immunological binding
characteristics and/or biological properties as outlined for the antibodies illustrated in the
es. In accordance with the present ion human monoclonal antibodies specific for
HTT were cloned from B cells of a pool of healthy human subjects. However, in another
embodiment of the present invention, the human monoclonal anti—HTT antibodies might also
be cloned from B cells of patients showing symptoms of a disease and/or disorder associated
with HTT amyloidosis.
In the course of the experiments performed in accordance with the present invention, antibodies
present in the conditioned media of cultured human memory B cell were evaluated for their
ty to bind to HTT and to more than 10 other proteins including bovine serum albumin
(BSA); see Examples 8, 13, 18, 31 and 33. Only the B-cell supematants able to bind to the HTT
protein but not to any of the other proteins in the screen were selected for firrther analysis,
including determination of the antibody class and light chain subclass. The selected B-cells
were then processed for antibody cloning.
In brief, this consisted in the extraction of messenger RNAs from the selected B—cells, retro-
transcription by RT-PCR, amplification of the antibody-coding s by PCR, cloning into
plasmid vectors and sequencing. Selected human antibodies were then ed by
recombinant expression in HEK293 or CHO cells and ation, and subsequently
characterized for their capacity to bind human HTT n. The combination of various tests,
e. g. recombinant expression of the antibodies in HEK293 or CHO cells and the subsequent
characterization of their binding specificities towards human HTT protein, and their distinctive
binding to pathologically mutated and/or ated forms thereof confirmed that for the first
time human antibodies have been cloned that are highly specific for HTT and distinctively
recognize and selectively bind the pathologically aggregated forms of HTT protein. In some
cases, mouse chimeric antibodies were also generated on the basis of the variable domains of
the human dies of the present invention.
Thus, the present invention generally relates to recombinant human-derived monoclonal anti-
HTT antibodies and HTT-binding fragments, synthetic and biotechnological tives and
variants thereof. In one embodiment of the invention, the antibody is capable of binding human
HTT.
In one embodiment of the present invention the dy specifically binds an epitope in a
polyP-region of HTT, which ses the amino acid sequence PPPPPPPP (NI-302.33C11;
NI-302.44D7; NI-302.7A8; NI-302.3D8; NI-302.46C9) (SEQ ID Nos. 139, 151, 154, 158,
161), amino acid sequence PPPPPP 2.11H6, NI-302.18A1, NI-302.52C9 (SEQ ID Nos.:
157, 159, 160), amino acid sequence PPPPPPPPPPP (NI-302.74C11, NI-302.15F9, NI-
302.39G12, .11A4, NI-302.22H9, NI-302.37C12, NI-302.55D8, NI-302.78H12, NI-
302.71F6 (SEQ ID Nos.: 146, 147, 148, 149, 150, 152, 153, 155, 156), an epitope in the P—rich—
region which comprises the amino acid sequence PQPPPQAQPL (NI-302.63F3 SEQ ID No.
140, NI-302.64E5 SEQ ID No. 200), the amino acid ce PPPQLPQPPP (NI-302.31F11,
SEQ ID No. 141), the amino acid sequence QAQPLLPQPQPPPPP (NI-302.2A2; SEQ ID No.
142), or the amino acid sequence QPPPQAQPL (NI302.15D3; SEQ ID No. 143), an
e in the C-terminal region which comprise the amino acid sequence
PPGPAVAEEPLHRP (NI-302.35C1, SEQ ID No. 145) or PPPGPAVAEEPLH (NI-
302.72F10, SEQ ID No. 202), an epitope in the N-terminal region which comprises the amino
acid sequence KAFESLKSFQ (NI-NI-302.15E8, SEQ ID No. 144) or an epitope in the P/Q-
rich-region which comprises the amino acid sequence QQQQQQQQQPPP (NI-302.7D8 SEQ
ID No. 201), or a conformational epitope.
In another embodiment, the t invention is directed to an anti—HTT antibody, or antigen-
binding fragment, t or biotechnological derivatives thereof, where the antibody
specifically binds to the same epitope in a polyP-region ofHTT as a nce antibody selected
from the group consisting 02.33C11, .74C11, NI-302.15F9, NI-302.39G12, NI-
302.11A4, NI-302.22H9, NI-302.44D7, NI-302.37C12, NI-302.55D8, NI-302.7A8,
302.78H12, NI-302.71F6, NI-302.11H6, NI-302.3D8, NI-302.18A1, NI-302.8F1, NI-
302.52C9, .46C9. Epitope mapping identified a sequence within the polyP-region of
human HTT including amino acids PPPPP (SEQ ID Nos.: 146, 147, 148, 149, 150,
152, 153, 155, 156) as the unique linear epitope ized by antibodies .74C1l, NI-
302.15F9, NI-302.39G12, NI-302.11A4, .22H9, NI-302.37C12, NI-302.55D8, NI-
302.78H12, NI-302.71F6 ofthis invention. Additionally, epitope g identified a sequence
within the polyP-region of human HTT including amino acids PPPPPPPP (SEQ ID Nos. 139,
151, 154, 158, 161) as the unique linear epitope recognized by dies NI-302.33C11, NI-
302.44D7, NI—302.7A8, NI—302.3D8, NI-302.46C9 ofthis ion, and amino acids PPPPPP
(SEQ ID Nos: 157, 159, 160) as the unique linear epitope recognized by antibodies NI-
H6, NI-302.18A1, NI-302.52C9 of this invention. Therefore, in one embodiment the
antibody of the present invention is provided, wherein the antibody specifically binds to an
epitope in a polyP—region of HTT, which comprises the amino acid sequence PPPPPPPPPPP
(SEQ ID Nos.: 146, 147, 148, 149, 150, 152, 153, 155, 156), PPPPPPPP (SEQ ID Nos. 139,
151, 154, 158, 161), or PPPPPP (SEQ ID Nos: 157, 159, 160).
In one embodiment, the present invention is directed to an anti-HTT antibody, or antigen-
binding fragment, variant or biotechnological derivatives f, where the antibody
specifically binds to the same epitope in the P-rich region of HTT as a reference antibody
selected from the group consisting of NI-302.63F3, NI-302.31F11, NI-302.2A2, and NI-
302.15D3. Epitope mapping identified a sequence within the P-rich-region of human HTT
ing amino acids PQPPPQAQPL (SEQ ID No. 140) as the unique linear e
recognized by antibody NI-302.63F3 of this invention, PPPQLPQPPP (SEQ ID No. 141), as
the unique linear epitope recognized by antibody NI-302.31F11 of this invention,
PPPQLPQPPP (SEQ ID No. 141), as the unique linear epitope recognized by antibody NI-
302.31F11 of this invention, QAQPLLPQPQPPPPP (SEQ ID No. 142) as the unique linear
epitope recognized by antibody .2A2, PPPQLPQPPPQAQPL (SEQ ID No. 143) as the
unique linear epitope recognized by antibody NI302. 15D3, PQPPPQAQPL as the unique linear
epitope recognized by antibody NI302.64E5. Therefore, in one embodiment the antibody ofthe
present invention is provided, wherein the antibody specifically binds to an epitope in the P-
rich—region of HTT which comprises the amino acid sequence PQPPPQAQPL (SEQ ID No.
140), QPPP (SEQ ID No. 141), QAQPLLPQPQPPPPP (SEQ ID No. 142),
PPPQLPQPPPQAQPL (SEQ ID No. 143).
In another embodiment the present invention is directed to an anti-HTT antibody, or antigen-
binding nt, variant or biotechnological derivatives thereof, wherein the antibody
specifically binds to the same epitope in the polyQ/polyP—region ofHTT as reference antibody
NI-302.7D8. Epitope mapping identified a sequence within the Q/P-rich—region ofhuman HTT
ing amino acids QQQQQQQPPP (SEQ ID No. 201) as the unique linear epitope
recognized by antibody NI-302.7D8 of this invention. Therefore, in one embodiment the
antibody of the present invention is ed, wherein the antibody specifically binds to an
epitope in in the polyQ/polyP-region of HTT which comprises the amino acid sequence
QQQQQQQPPP (SEQ ID No. 201)
In one embodiment, the present invention is directed to an anti—HTT antibody, or antigen-
binding fragment, variant or biotechnological derivatives thereof, where the antibody
specifically binds to the same epitope in the inal region ofHTT as a reference antibody
selected from the group ting of NI-302.35C1. Epitope mapping identified a sequence
within the C—terminal region ofhuman HTT including amino acids PPGPAVAEEPLHRP (SEQ
ID No. 145) as the unique linear epitope recognized by antibody NI-302.35Cl ofthis invention.
Therefore, in one embodiment the antibody of the present invention is provided, wherein the
antibody specifically binds to an e in in the C-terminal region of HTT which comprises
the amino acid sequence PPGPAVAEEPLHRP (SEQ ID No. 145).
In a r embodiment, the present invention is directed to an anti-HTT dy, or antigen-
binding fragment, variant or biotechnological derivatives thereof, where the antibody
cally binds to the same e in the inal region of HTT as reference dy
NI-302.72F10. Epitope mapping identified a sequence within the C-terminal region of human
HTT including amino acids PPPGPAVAEEPLH (SEQ ID No. 202) as the unique linear epitope
ized by antibody NI-302.72F10 of this invention. ore, in one embodiment the
antibody of the present invention is provided, wherein the antibody specifically binds to an
epitope in in the C-terminal region of HTT which comprises the amino acid sequence
PPPGPAVAEEPLH (SEQ ID No. 202).
In r embodiment, the present invention is directed to an anti-HTT antibody, or antigen-
binding fragment, variant or biotechnological derivatives thereof, where the antibody
cally binds to the same epitope in the N—terminal region of HTT as reference antibody
NI-302.15E8. Epitope mapping identified a ce within the N-terminal region of human
HTT including amino acids KAFESLKSFQ (SEQ ID No. 144) as the unique linear epitope
recognized by antibody NI-302.15E8 of this ion. Therefore, in one embodiment the
antibody of the present invention is provided, wherein the antibody specifically binds to an
epitope in in the N-terminal region of HTT which comprises the amino acid sequence
KAFESLKSFQ (SEQ ID No. 144).
In one embodiment, the present ion is ed to an anti-HTT antibody, or antigen-
binding fragment, variant or biotechnological tives thereof, where the antibody
specifically binds to the same epitope ofHTT exon 1 as a reference antibody selected from the
group ting of NI-302.6N9, NI-302.4A6, NI-302.12H2 or NI-302.8M1 which have been
shown not to bind to linear es ofHTT exon 1 but aggregated HTT exon 1 ns with
21 or 49 polyQ (HD21 and HD49) with high affinity and an ECso value in the subnanomolar
range; see, e. g., Example 25 and Figure 20 for overview. Therefore, in one preferred
embodiment the antibody ofthe present invention specifically binds aggregated forms of HTT,
in particular protein aggregates derived from HTT exon 1 with an ECso value of below 1 nM,
preferably below 0,1 nM and most preferably below 0,01 nM.
Furthermore, without intending to be bound by initial experimental observations as
demonstrated in the Examples and shown in Figures, the human monoclonal NI-302.33C11,
NI-302.63F3, NI-302.35C1, NI-302.31F11, NI-302.6N9, NI-302.46C9, NI-302.8F1, NI-
302.74C11, NI-302.15F9, .39Gl2, NI-302.11A4, NI-302.22H9, NI-302.44D7, NI-
302.55D8, NI—302.7A8, NI—302.78Hl2, NI—302.71F6, .11H6, NI-302.3D8, and NI.302-
64E5 and NI.302-72F10 anti-HTT antibodies of the present invention are preferably
characterized in specifically g to pathological mutated and/or aggregated HTT and to
substantially smaller affinity recognizing HTT in the logical form, see 6.g. Examples 7,
13, 18 and Figs. 3, 7, 11, 21, 32. Hence, the present invention provides a set of human anti-HTT
antibodies with binding properties particularly useful for diagnostic and therapeutic purposes.
Thus, in one embodiment the present ion provides antibodies which are capable of
specifically binding pathologically aggregated forms of HTT. However, in addition or
alternatively, the antibodies ofthe present invention which are capable to bind to a region
or a P-rich region ofHTT exon 1 may be also utilized in other applications. In particular, these
dies are not limited to HTT but can also bind to other targets showing also a polyP-tract
or a P-rich region.
In one embodiment, the antibody ofthe t ion exhibits the binding properties of the
exemplary NI-302.33C11, NI-302.63F3, .35C1, NI.302-7D8 and NI.302-72F10
antibodies as described in the Examples. The anti-HTT antibody of the present invention
preferentially recognizes pathologically d HTT, such as mutated and/or aggregated HTT
species and fragments thereof rather than physiological HTT. Thus, in one embodiment, the
antibody of the present invention does not substantially recognize logical HTT species.
The term "does not substantially recognize" when used in the present application to describe
the g y of a molecule of a group comprising an antibody, a fragment thereof or a
binding molecule for a specific target molecule, antigen and/or conformation of the target
molecule and/or antigen means that the le of the aforementioned group binds said
molecule, antigen and/or conformation with a binding affinity which is at least 2—fold, 3-fold,
4-fold, 5-fold, , 7-fold, 8-fold or 9-fold less than the binding affinity of the molecule of
the aforementioned group for binding r molecule, antigen and/or conformation. Very
often the dissociation constant (KD) is used as a measure of the binding affinity. Sometimes, it
is the ECso on a specific assay as for e an ELISA assay that is used as a measure of the
binding affinity. Preferably the term "does not substantially recognize" when used in the t
application means that the molecule of the entioned group binds said molecule, antigen
and/or conformation with a binding affinity which is at least or 10—fold, 20-fold, 50-fold, 100-
fold, lOOO—fold or lOOOO-fold less than the binding affinity of said molecule of the
entioned group for binding to another molecule, antigen and/or conformation.
As described above, the aggregation of HTT in HD is ted to occur due to an extension
of the poly-glutamine tract within the HTT exon 1. In particular, it has been shown that HD
mainly occurs in patients having a threshold over the 35-40 glutamine residues in length in the
HTT. Accordingly, as shown in Example 3, aggregated and soluble construct of HTT exon 1
with 21, 35 or 49 polyQ repeats were generated in order to identify the utility ofthe anti-HTT-
antibodies of the present invention to specifically bind to pathological altered HTT.
The term HDX as used in the following describes the HTT constructs which were generated in
accordance with Example 3. Particularly the X denotes the number of glutamine repeats (Qs),
e. g. HTT exon 1 protein with 21 polyQ repeats will be denoted HD21.
Utilizing the constructs as described in the Examples, it could be shown that the anti-HTT
antibody of the present invention in addition, or alternatively, binds to pathologically, disease
causing and/or d and/or aggregated forms of human HTT. In this context, the binding
affinities may be in the range as shown for the exemplary NI-302.33C11, NI-302.63F3, NI-
302.35C1, NI-302.31F11, .6N9, NI-302.46C9, NI-302.8F1, NI-302.74C11, NI-
302.15F9, NI-302.39G12, NI-302.11A4, NI-302.22H9, NI-302.44D7, .55D8, NI-
302.7A8, NI-302.78H12, NI-302.71F6, NI-302.11H6, and NI-302.3D8 antibodies in Fig. 3(A),
7(A), 11(A), 14(A), respective Fig. 19, 20 and 31, zle. having half maximal effective
concentrations (ECso) of about 1 pM to 250 nM, preferably an ECso of about 25 pM to 50 nM,
most preferably an ECso of about 0.05 nM to 30 nM for human aggregated TT and
aggregated recombinant HD49-HTT, or an ECso of about 0.05 nM to 5 nM for human
aggregated HD21-HTT and aggregated recombinant HD21-HTT.
In particular, the anti-HTT antibody, binding fragment or biotechnological derivative thereof
has a binding y corresponding to an ECso value of S 20 nM, preferably 5 10 nM and most
preferably 5 1 nM for binding aggregated HD49 HTT and/or of S 40 nM, preferably 5 10 nM
and most ably 5 1 nM for binding HD21 HTT; see Fig. 3, 7, 11, 19 and 31.
HTT aggregation associated with the development of HD is most frequently ated with
poly—glutamine ) tracts of > 35 repeats. As shown in the present invention, the anti-HTT
antibodies described herein showed high binding efficiency to HD tracts with higher repetitions,
see 6.g. es 7, 13, 18, 31 and 33. ore, in one embodiment of the present invention
the TT antibody, HTT-binding molecule, fragment, synthetic or biotechnological variant
thereof binds to HTT with expanded poly-glutamine (Q) tract. In a preferred embodiment it
binds to HTT with more than 35 repeats. In a particular preferred embodiment of the present
invention, the antibody binds to HTT with expanded poly-glutamine (Q) tract consisting of 49
(HD49) repeats over 35 repeats (HD35) and more over 21 repeats (HD21).
However, in accordance with the present invention also anti-HTT antibodies, HTT-binding
molecules, fragments, synthetic or biotechnological variants thereof binding to poly-glutamine
(polyQ) tracts under 35 (HD35) are bed. ore, in one ment of the present
invention, the antibody, g molecule or variants thereof binds to HTT showing "normal"
polyQ tracts. In particular, the antibody is capable of binding to HTT with polyQ tracts < 35
repeats (HD35).
Some antibodies are able to bind to a wide array of biomolecules, e.g., proteins. As the skilled
artisan will appreciate, the term specific is used herein to indicate that other biomolecules than
HTT ns or fragments thereof do not significantly bind to the antigen-binding molecule,
e.g., one of the dies of the present invention. Preferably, the level of binding to a
biomolecule other than HTT results in a binding affinity which is at most only 20% or less,
% or less, only 5% or less, only 2% or less or only 1% or less (z'.e. at least 5, 10, 20, 50 or
100 fold lower, or anything beyond that) of the affinity to HTT, respectively; see e.g., Fig. 20.
In one embodiment, the anti-HTT antibody of the present invention binds preferentially to
ated forms of HTT and/or fragments, derivatives, fibrils and/or oligomers thereof. In
another embodiment the anti-HTT antibody ofthe present ion preferentially binds to both
native HTT and pathologically mutated and/or aggregated forms of HTT.
In a further embodiment of the present invention, the anti-HTT antibody or nding
fragment, synthetic or biotechnological derivative f is a bispecific antibody. Thus, the
antibody of the present invention may be capable of recognizing at least two distinct epitopes
either on the same or on ent antigens; see also, supra.
In one ment, at least one binding site/domain of the bispecific antibody specifically
recognizes an epitope in a polyP-region of HTT, which comprises the amino acid sequence
PPPPPPPP (NI-302.33C11; NI-302.44D7; NI-302.7A8; NI—302.3D8; .46C9) (SEQ ID
Nos. 139, 151, 154, 158, 161), amino acid sequence PPPPPP (NI-302.11H6, NI-302.18A1, NI-
302.52C9 (SEQ ID Nos.: 157, 159, 160), amino acid sequence PPPPPPPPPPP (NI-302.74C11,
NI-302.15F9, NI-302.39G12, NI-302.11A4, NI-302.22H9, NI-302.37C12, NI-302.55D8, NI-
302.78H12, NI-302.71F6 (SEQ ID Nos.: 146, 147, 148, 149, 150, 152, 153, 155, 156), an
epitope in the P-rich-region which ses the amino acid sequence AQPL (NI-
302.63F3 SEQ ID No. 140, NI—302.64E5 SEQ ID No. 200), the amino acid sequence
PPPQLPQPPP (NI-302.31F11, SEQ ID No. 141), the amino acid ce
QAQPLLPQPQPPPPP (NI-302.2A2; SEQ ID No. 142), or the amino acid sequence
PPPQLPQPPPQAQPL (NI302.15D3; SEQ ID No. 143), an epitope in the C-terminal region
which comprise the amino acid sequence PPGPAVAEEPLHRP (NI-302.35C1, SEQ ID No.
145) or PPPGPAVAEEPLH (NI—302.72F10, SEQ ID No. 202), an epitope in the N—terminal
region which comprises the amino acid sequence KAFESLKSFQ (NI-302.15E8, SEQ ID No.
144), an epitope in the P/Q-rich-region which comprises the amino acid sequence
QQQQQQQQQPPP (NI-302.7D8 SEQ ID No. 201), or a conformational epitope ized
by any one of antibodies N1-302.6N9, NI-302.4A6, NI-302.12H2 or NI-302.8M1.
As mentioned before, accumulation of polyglutamine (poly-Gln, polyQ)-containing HTT
protein ates in neuronal intranuclear ions is a hallmark of the progressive
neurodegenerative er Huntington's disease (HD). Electron micrographs of these
aggregates ed fibrillar structures showing a closely related morphology as in B-amyloid
fibrils in Alzheimer's disease, see e. g. Caughey et al., Trends Cell Biol. 7 (1997), 56—62 and
Caputo et al, Arch. Biochem. Biophys. 292 (1992), 199—205, suggesting that HD, n
degenerative s primarily involves medium spiny striatal neurons and al neurons
leading to dysfunction and subsequently neuronal loss, tissue damage due to excitotoxicity,
mitochondrial damage, free radicals, and possibly also inflammatory mechanisms including
microglia activation and further progressive nature of symptoms, are a result of toxic amyloid
fibrillogenesis. Therefore, in one embodiment the antibody of the present invention is useful
for the treatment of Huntingtion's disease (HD) and ms thereof
So far, intracellularly expressed antibodies (intrabodies) have been described and considered as
therapeutic tools in HD which b the HTT function, see 6.g. Ali et al. in Neurobiology of
Huntington's Disease: Applications to Drug ery, Lo et al., Chapter 10, CRC Press
(2011). Although these intrabodies showed a positive effect on the aggregation and cell death
induced by HTT in cell based assays, see 6.g. Khoshnan et al., Proc Natl Acad Sci U S A. 99
(2002), 1002—1007, one disadvantage in their therapeutic utility is the route of administration.
In particular, the preferred method for the delivery of the therapeutic intrabodies to the brain is
a viral vector-based gene therapy. However, a major disadvantage of using this kind of
administration is among other the high host immunogenicity. Therefore, ral methods
utilizing other routes of administration as are preferably used in the therapeutic or diagnostic
ches. The antibodies ofthe present invention have been shown to attenuate the dendritic
spine density loss upon addition to the culture medium, z'.e. ellularly. Therefore, in
contrast to the odies described before, the antibodies of the present invention can be
expected to be ious following therapeutically preferred administration routes.
Accordingly, in one embodiment of the present invention the antibody is administrated by a
subcutaneous injection (3.0.), intravenous injection (z'.v.), intramuscular injection (22m),
intraperitoneal (2'.p.), intrathecal, jet injection, wherein the radius of action is not limited to the
intracellular expression of the antibody.
As already mentioned before, and as shown in Example 24 and Fig. 17 the eutic utility
ofthe antibodies of the present invention has been shown. In particular, it has been shown that
the anti-HTT antibodies of the t ion are capable of ating the dendritic spine
density loss. Therefore, in one embodiment of the present invention the ant-HTT antibody, the
HTT—binding fragment, synthetic or hnological tive thereof leads to an attenuation
of spine density loss.
Furthermore, the therapeutic utility of the antibodies of the present invention has been
demonstrated in Example 34 and Fig. 34. In particular, it has been shown that the anti—HTT
antibodies of the present ion improve behavioral recovery during task-specific training
and enhance loco-motor ability. Therefore, in one embodiment of the present invention the ant-
HTT antibody, the HTT-binding fragment, synthetic or biotechnological derivative thereof
leads to an improvement of behavioral performance during task-specific ng and
enhancement of sensorimotor ability.
The present invention is also drawn to an antibody, or antigen-binding fragment, variant or
derivatives thereof, where the antibody comprises an antigen-binding domain identical to that
of an antibody selected from the group consisting of NI-302.33Cll, NI-302.63F3, NI-
302.35Cl, NI-302.31Fll, NI-302.2A2, NI-302.6N9, NI-302.74Cll, NI-302.15F9, NI-
302.39G12, NI-302.11A4, NI-302.22H9, .44D7, NI-302.37Cl2, NI-302.55D8, NI-
302.7A8, NI-302.78H12, NI-302.71F6, NI-302.11H6, NI-302.3D8, NI-302.18Al, NI-302.8Fl,
NI-302.52C9, .46C9, NI-302.15E8, NI-302.15D3, NI-302.64E5, NI-302.7D8, NI-
302.72F10, NI-302.12H2, NI-302.8M1 and NI-3024A6.
The present invention further exemplifies several binding molecules, e.g., antibodies and
binding fragments thereof, recognizing a polyP-region of HTT, which may be characterized by
comprising in their le region, e.g., binding domain at least one complementarity
determining region (CDR) ofthe VH and/or VL variable region comprising any one ofthe amino
acid sequences depicted in Fig. l. The corresponding nucleotide sequences ng the above-
identified variable regions are set forth in Table 11 below. Exemplary sets of CDRs of the above
amino acid sequences ofthe VH and/or VL region are depicted in Fig. 1. However, as discussed
in the following the person d in the art is well aware of the fact that in addition or
alternatively CDRs may be used, which differ in their amino acid ce from those set forth
in Fig. l by one, two, three or even more amino acids in case of CDR2 and CDR3. Therefore,
in one embodiment the antibody ofthe present ion or a HTT—binding fragment thereof is
provided comprising in its variable region at least one complementarity determining region
(CDR) as depicted in Fig. 1 and/or one or more CDRs thereof comprising one or more amino
acid substitutions.
Further the present invention exemplifies several binding molecules, e. g., antibodies and
binding fragments thereof, izing the P-rich region of HTT which may be characterized
by comprising in their variable region, e.g., binding domain at least one complementarity
determining region (CDR) ofthe VH and/or VL variable region comprising any one ofthe amino
acid sequences depicted in Fig. l. The corresponding nucleotide sequences encoding the above-
identified variable regions are set forth in Table III below. Exemplary sets ofCDRs ofthe above
amino acid ces ofthe VH and/or VL region are depicted in Fig. 1. However, as discussed
in the following the person skilled in the art is well aware of the fact that in addition or
alternatively CDRs may be used, which differ in their amino acid sequence from those set forth
in Fig. l by one, two, three or even more amino acids in case of CDR2 and CDR3. Therefore,
in one embodiment the antibody ofthe present invention or a HTT-binding fragment thereof is
provided comprising in its variable region at least one complementarity determining region
(CDR) as depicted in Fig. 1 and/or one or more CDRs thereof comprising one or more amino
acid substitutions.
The present invention in addition exemplifies several binding les, e.g., antibodies and
binding fragments thereof, recognizing the C-terminal region of HTT which may be
terized by comprising in their variable region, e.g, binding domain at least one
mentarity determining region (CDR) of the VH and/or VL variable region comprising
any one ofthe amino acid sequences depicted in Fig. l. The corresponding nucleotide sequences
encoding the above-identified variable regions are set forth in Table IV below. ary sets
of CDRs of the above amino acid sequences of the VH and/or VL region are depicted in Fig. 1.
However, as discussed in the following the person skilled in the art is well aware of the fact
that in addition or atively CDRs may be used, which differ in their amino acid sequence
from those set forth in Fig. 1 by one, two, three or even more amino acids in case of CDR2 and
CDR3. Therefore, in one embodiment the antibody of the present invention or a HTT-binding
fragment thereof is provided sing in its variable region at least one complementarity
determining region (CDR) as depicted in Fig. 1 and/or one or more CDRs thereof comprising
one or more amino acid substitutions.
Additionally, the present invention exemplifies several binding molecules, e.g., antibodies and
binding fragments f, recognizing the N—terminal—region of HTT which may be
characterized by comprising in their variable region, e. g., binding domain at least one
complementarity ining region (CDR) of the VH and/or VL variable region comprising
any one ofthe amino acid sequences depicted in Fig. l. The corresponding nucleotide sequences
encoding the above-identified variable regions are set forth in Table VI below. Exemplary sets
of CDRs of the above amino acid sequences of the VH and/or VL region are depicted in Fig. 1.
However, as discussed in the ing the person skilled in the art is well aware of the fact
that in addition or alternatively CDRs may be used, which differ in their amino acid sequence
from those set forth in Fig. 1 by one, two, three or even more amino acids in case of CDR2 and
CDR3. ore, in one embodiment the antibody of the present invention or a HTT-binding
nt thereof is provided comprising in its le region at least one mentarity
determining region (CDR) as depicted in Fig. 1 and/or one or more CDRs thereof comprising
one or more amino acid substitutions.
In one embodiment, the antibody of the t invention is any one of the antibodies
comprising an amino acid sequence of the VH and/or VL region as depicted in Fig. l or a VH
and/or VL region thereof sing one or more amino acid substitutions. Preferably, the
antibody ofthe present invention is characterized by the preservation of the cognate pairing of
the heavy and light chain as was present in the human B-cell.
In a further embodiment of the present invention the anti-HTT antibody, HTT-binding
fragment, synthetic or biotechnological variant thereof can be optimized to have appropriate
binding affinity to the target and pharmacokinetic properties. Therefore, at least one amino acid
in the CDR or le region, which is prone to modifications selected from the group
consisting of glycosylation, oxidation, deamination, peptide bond cleavage, iso-aspartate
formation and/or ed cysteine is substituted by a mutated amino acid that lack such
alteration or wherein at least one carbohydrate moiety is deleted or added chemically or
enzymatically to the antibody. es for amino acid zation can be found in Table
VII, wherein antibodies showing primer-induced alterations are shown. Additional
modification optimizing the antibody properties are described in Gavel et (11., Protein
Engineering 3 (1990), 433-442 and Helenius et al., Annu. Rev. Biochem. 73 (2004), 1019-
1049.
Alternatively, the dy of the present invention is an antibody or antigen-binding fragment,
derivative or variant thereof, which es for binding to HTT with at least one of the
antibodies having the VH and/or VL region as depicted in Fig. 1.
The antibody with at least one antibody having the VH and/or VL region as depicted in Fig. 1
competing for binding to HTT may be further characterized in a dot blot assay and/or filter
ation, as described in Example 6, 13, 18, 31 and/or 32. Therefore, in one embodiment of
the t invention the antibody binds to HTT, preferably to HTT with an expanded poly-Q
tract consisting of 49 (HD49) repeats in a dot blot assay and/or filter retardation.
mental results provided in Figs. 3, 7, ll, 21, 22 as well as Figs. 32 and 33, and Examples
6, 7, 13, 18, 26 and 32 suggest that some of the anti-HTT antibodies of the present invention
preferentially bind to disease causing mutated and/or ated forms ofhuman anti-HTT over
the other amyloid forming proteins. In one embodiment thus, the antibody of the present
invention entially recognizes mutated and/or aggregated HTT and/or fragment and/or
derivatives thereof over other amyloid forming proteins.
In one embodiment of the present invention the anti-HTT antibody, HTT—binding fragment,
synthetic or biotechnological derivative thereof does preferentially recognize mutated,
aggregated and/or soluble forms of HTT over logical HTT.
The antibody of the present ion may be human, in particular for therapeutic applications.
Alternatively, the antibody of the present invention is a rodent, ized or chimeric rodent-
human antibody, preferably a murine, murinized or chimeric murine-human antibody or a rat,
ratinized or chimeric rat-human antibody which are particularly useful for diagnostic methods
and studies in animals. In one embodiment the antibody of the present invention is a chimeric
-human or a ized dy. Furthermore, in one embodiment, the chimeric
antibody of the present invention, i.e. comprising the variable domains of a human antibody
and generic murine light and heavy constant domains bind with a high affinity to human HTT.
Preferably, the g affinity of chimeric dies is similar to their human counterparts.
In one ment the dy of the present invention is provided by cultures of single or
oligoclonal B-cells that are ed and the supernatant ofthe culture which contains antibodies
produced by said s, is screened for ce and affinity of anti-HTT antibodies therein.
The screening process ses screening for binding to native monomeric, fibrillar or non-
fibrillar aggregates like oligomers of hHTT derived from a synthetic full-length hHTT peptide
or e.g. purified from human plasma or recombinant expression.
As mentioned above, due to its generation upon a human immune response the human
monoclonal antibody of the present ion will recognize epitopes which are of particular
pathological relevance and which might not be accessible or less immunogenic in case of
immunization processes for the generation of, for example, mouse monoclonal antibodies and
in vitro ing ofphage display libraries, respectively. Accordingly, it is prudent to stipulate
that the epitope ofthe human anti-HTT antibody ofthe present invention is unique and no other
antibody which is e of binding to the epitope recognized by the human monoclonal
dy of the present invention exists. A further indication for the uniqueness of the
antibodies ofthe present invention is the fact that, as indicated in Figs. 19, 20, 24, and 27 to 29,
antibodies of the present invention bind es that are specific for the mutated and/or
ated forms of HTT, which as indicated above, are of particular pathological relevance
and may not be obtainable by the usual processes for antibody generation, such as immunization
or in vitro library screenings.
Therefore, in one ment the present invention also extends generally to TT
antibodies and HTT-binding molecules which compete with the human monoclonal dy
ofthe present invention for specific binding to HTT. The present invention is more specifically
directed to an antibody, or antigen-binding fragment, variant or derivatives thereof, where the
antibody specifically binds to the same epitope in a polyP-region of HTT as a reference
antibody selected from the group consisting of NI-302.33Cl l, NI-302.74Cl l, NI-302.15F9,
NI-302.39G12, NI-302.l 1A4, NI-302.22H9, NI-302.44D7, NI-302.37C12, NI-302.55D8, NI-
302.7A8, NI-302.71F6, NI—302.l 1H6, NI-302.3D8, NI-302.18Al, NI-302.8Fl, NI-302.52C9,
NI-302.78H12 and NI-302.46C9. Further, in one embodiment the present invention is more
specifically directed to an antibody, or antigen-binding fragment, variant or derivatives thereof,
where the antibody specifically binds to the same epitope in the P-rich-region of HTT as a
reference antibody selected from the group consisting of .63F3, NI-302.31Fll, NI-
302.2A2, NI-302.15D3 and/or NI-302.64E5. In another embodiment the present invention is
ed to an antibody, or antigen-binding fragment, variant or derivatives thereof, which binds
to the same e in the C-terminal—region ofHTT as a reference antibody selected from the
group consisting of NI-302.35Cl and/or NI.302-72F10. In a fiirther embodiment the t
invention is directed to an antibody, or antigen-binding fragment, variant or derivatives thereof,
which binds to the same epitope in the N—terminal-region of HTT as a reference antibody
selected from the group ting of NI-302.15E8. In another embodiment the present
invention is directed to an dy, or antigen—binding fragment, variant or derivatives thereof,
which binds to the same epitope of HTT as a reference antibody selected from the group
consisting ofNI-302.6N9, NI-320.12H2, NI-302.8Ml and/or .4A6. In one embodiment
the present invention is directed to an dy, or antigen-binding fragment, variant or
derivatives thereof, which binds to the same epitope ofHTT as reference antibody NI-302.7D8.
In a preferred ment the present ion also extends generally to anti-HTT antibodies
and HTT-binding molecules which compete with the human onal antibody of the
present invention for specific binding to mutated and/or aggregated HTT species or fragments
thereof, as shown in Examples 7, 13, 18, 31 and 33 as well as Figs. 7, l3, l9 and 31. The present
ion is therefore, more specifically also directed to an antibody, or antigen-binding
fragment, variant or derivatives thereof, where the antibody cally binds to the same
epitope in a polyP—region ofmutated and/or aggregated HTT species or fragments thereof as a
reference antibody selected from the group consisting of NI-302.74Cll, NI-302.15F9, NI-
302.39G12, NI-302.llA4, NI-302.22H9, NI-302.37C12, .55D8, NI-302.78H12, NI-
F6, NI-302.33Cll, NI-302.44D7, NI-302.7A8, NI-302.3D8, NI-302.46C9, NI-
302.IlH6, NI-302.18Al, NI-302.52C9, and/or NI-302.8Fl. r, in one embodiment the
present invention is more specifically directed to an antibody, or antigen-binding fragment,
variant or derivatives thereof, where the antibody specifically binds to the same epitope in the
P-rich—region of mutated and/or aggregated HTT species or fragments thereof as a nce
antibody selected from the group consisting of NI-302.63F3, NI-302.3lF1 l, NI-302.2A2, NI-
302.15D3 and/or NI-302.64E5. In another embodiment the present invention is directed to an
antibody, or antigen—binding fragment, variant or derivatives thereof, which binds to the same
epitope in the C-terminal—region of mutated and/or aggregated HTT species or nts
thereof as a reference antibody selected from the group consisting of NI-302.35Cl and/or
NI.302-72F10. In a further embodiment the present invention is directed to an antibody, or
antigen-binding fragment, variant or derivatives f, which binds to the same epitope in the
N—terminal-region of mutated and/or aggregated HTT s or fragments thereof as a
reference dy selected from the group consisting ofNI-302.15E8. In another embodiment
the present invention is directed to an antibody, or n-binding fragment, variant or
derivatives thereof, which binds to the same epitope of HTT as a reference antibody selected
from the group consisting of NI-302.6N9, .12H2, NI-302.8M1 and/or NI—302.4A6. In
one embodiment the present invention is directed to an antibody, or antigen-binding fragment,
variant or biotechnological derivative thereof, which binds to the same e of HTT as
reference antibody NI-302.7D8.
Competition between antibodies is determined by an assay in which the immunoglobulin under
test inhibits specific binding of a reference antibody to a common antigen, such as HTT.
Numerous types of competitive binding assays are known, for e: solid phase direct or
indirect radioimmunoassay (RIA), solid phase direct or indirect enzyme immunoassay (EIA),
ch competition assay; see Stahli et (11., Methods in Enzymology 9 (1983), 242-253; solid
phase direct biotin-avidin EIA; see Kirkland et al., J. Immunol. 137 (1986), 3614-3619 and
Cheung et al., Virology 176 (1990), 546-552; solid phase direct labeled assay, solid phase direct
labeled sandwich assay; see Harlow and Lane, Antibodies, A Laboratory Manual, Cold Spring
Harbor Press ; solid phase direct label RIA using I125 label; see Morel er al., Molec.
l. 25 (1988), 7-15 and Moldenhauer et al., Scand. J. Immunol. 32 (1990), 77-82.
Typically, such an assay involves the use of purified HTT or mutated and/or aggregated HTT,
such as oligomers and/or fibrils thereof bound to a solid surface or cells bearing either of these,
an unlabeled test immunoglobulin and a labeled reference immunoglobulin, z'. e. the human
monoclonal antibody of the t invention. Competitive inhibition is ed by
determining the amount of label bound to the solid surface or cells in the presence of the test
immunoglobulin. Usually the test immunoglobulin is present in . Preferably, the
competitive binding assay is performed under conditions as described for the ELISA assay in
the appended Examples. Antibodies fied by competition assay (competing antibodies)
include antibodies binding to the same epitope as the reference dy and antibodies g
to an adjacent epitope sufficiently proximal to the epitope bound by the reference antibody for
steric hindrance to occur. Usually, when a competing antibody is present in excess, it will inhibit
specific binding of a reference antibody to a common antigen by at least 50% or 75%. Hence,
the present invention is r drawn to an antibody, or antigen-binding fragment, variant or
derivatives thereof, where the antibody competitively inhibits a reference antibody selected
from the group consisting of .33Cl l, NI-302.63F3, NI-302.35Cl, NI-302.31F11, NI-
302.2A2, .6N9, NI-302.74C11, NI-302.15F9, NI-302.39G12, NI-302.11A4, NI-
302.22H9, NI-302.44D7, NI-302.37C12, NI-302.55D8, NI-302.7A8, NI-302.78H12, NI-
F6, NI-302.l 1H6, NI-302.3D8, NI-302.18Al, NI-302.8Fl, NI-302.52C9, NI-302.46C9,
NI-302.15E8, NI-302.64E5, NI-302.7D8, NI-302.72F10, .12H2, NI-302.8Ml and/or
NI-302.4A6 from binding to HTT.
The present invention is further drawn to an dy, or antigen-binding fragment, variant or
derivatives thereof, where the dy competitively inhibits a reference antibody selected
from the group consisting of .74Cl l, NI-302.15F9, NI-302.39G12, NI-302.11A4, NI-
H9, NI-302.37C12, NI-302.55D8, NI-302.78H12, NI-302.71F6, .33Cll, NI-
302.44D7, .7A8, NI-302.3D8, NI-302.46C9, NI-302.11H6, NI-302.18Al, NI-
302.52C9, NI-302.8Fl, NI-302.63F3, NI-302.3 lFl l, NI-302.2A2, 15D3, NI-302.35Cl,
NI-302.6N9, NI-302.7D8 and/or NI-302.72F 10 from binding to mutated and/or aggregated
HTT species or fragments f.
In a preferred embodiment the antibody, the binding ofan antibody, binding fragment, tic
or biotechnological variant thereof, to HTT, preferably to HTT with an expanded poly-Q tract
consisting of 49 (HD49) repeats can be measured in a dot blot assay and/or filter retardation as
bed in the Examples, in particular in 7, l3, 18, 31 and/or 33.
In another embodiment, the present invention provides an isolated polypeptide comprising,
consisting essentially of, or consisting of an immunoglobulin heavy chain variable region (VH),
where at least one of VH-CDRs of the heavy chain variable region or at least two of the VH-
CDRs of the heavy chain variable region are at least 80%, 85%, 90% or 95% identical to
reference heavy chain VH-CDRl, VH-CDRZ or VH-CDR3 amino acid sequences from the
antibodies disclosed herein. Alternatively, the VH-CDRl, VH-CDR2 and VH-CDR3 s of
the VH are at least 80%, 85%, 90% or 95% identical to reference heavy chain VH -CDR1, VH-
CDR2 and VH-CDR3 amino acid sequences from the antibodies sed herein. Thus,
according to this embodiment a heavy chain variable region of the invention has VH-CDRl,
VH-CDR2 and VH—CDR3 polypeptide sequences d to the groups shown in Fig. 1
respectively. While Fig. 1 shows VH-CDRs defined by the Kabat system, other CDR
definitions, e.g., VH-CDRs defined by the Chothia system, are also included in the present
invention, and can be easily identified by a person of ordinary skill in the art using the data
presented in Fig. l.
In another embodiment, the t invention provides an isolated polypeptide comprising,
consisting essentially of, or consisting of an immunoglobulin heavy chain variable region (VH)
in which the VH-CDRl, VH-CDRZ and VH-CDR3 regions have polypeptide sequences which
are identical to the VH-CDRl, VH-CDRZ and VH-CDR3 groups shown in Fig. 1 respectively.
In another embodiment, the present invention provides an isolated polypeptide comprising,
consisting essentially of, or consisting of an immunoglobulin heavy chain variable region (VH)
in which the VH-CDRl, VH-CDRZ and 3 s have polypeptide sequences which
are identical to the VH—CDRl, VH-CDRZ and VH-CDR3 groups shown in Fig. 1 respectively,
except for one, two, three, four, five, or six amino acid substitutions in any one VH-CDR. In
n embodiments the amino acid substitutions are vative.
In another embodiment, the t invention provides an ed polypeptide comprising,
consisting essentially of, or consisting of an immunoglobulin light chain variable region (VL),
where at least one of the VL-CDRs of the light chain le region or at least two of the VL-
CDRs of the light chain variable region are at least 80%, 85%, 90% or 95% identical to
reference light chain VL-CDRl, VL-CDRZ or VL-CDR3 amino acid sequences from dies
disclosed herein. Alternatively, the VL-CDRl, VL—CDRZ and VL-CDR3 regions of the VL are
at least 80%, 85%, 90% or 95% identical to reference light chain VL-CDRI, 2 and VL-
CDR3 amino acid sequences from antibodies disclosed herein. Thus, according to this
embodiment a light chain variable region of the invention has l, VL-CDRZ and VL-
CDR3 polypeptide sequences related to the polypeptides shown in Fig. 1 respectively. While
Fig. 1 shows VL-CDRs defined by the Kabat system, other CDR definitions, e.g, VL-CDRs
defined by the Chothia system, are also included in the present invention.
In r ment, the present invention provides an isolated polypeptide comprising,
consisting essentially of, or consisting of an immunoglobulin light chain variable region (VL)
in which the VL-CDRl, VL—CDRZ and VL—CDR3 s have polypeptide sequences which
are identical to the VL-CDRl, VL'CDR2 and 3 groups shown in Fig. 1 respectively. In
another embodiment, the present invention provides an isolated polypeptide comprising,
consisting essentially of, or consisting of an immunoglobulin light chain variable region (VL)
in which the VL-CDRl, VL-CDRZ and VL-CDRS regions have polypeptide sequences which
are identical to the VL-CDRl, VL'CDR2 and VL-CDR3 groups shown in Fig. 1 respectively,
except for one, two, three, four, five, or six amino acid substitutions in any one VL-CDR. In
n embodiments the amino acid substitutions are conservative.
An immunoglobulin or its encoding cDNA may be further modified. Thus, in a further
embodiment the method of the present invention comprises any one ofthe step(s) of producing
a chimeric dy, murinized antibody, single—chain antibody, Fab-fragment, bi—specific
antibody, filSlOIl antibody, labeled antibody or an analog of any one of those. Corresponding
methods are known to the person skilled in the art and are described, 6. g. in Harlow and Lane
"Antibodies, A Laboratory Manual", CSH Press, Cold Spring Harbor (1988). When derivatives
of said antibodies are obtained by the phage display technique, surface plasmon resonance as
employed in the e system can be used to increase the efficiency of phage antibodies
which bind to the same epitope as that of any one of the antibodies described herein (Schier,
Human Antibodies Hybridomas 7 (1996), 97-105; Malmborg, J. Immunol. Methods 183
(1995), 7-13). The production of chimeric antibodies is described, for example, in international
ation WO 89/09622. Methods for the production of humanized antibodies are described
in, e.g, European application EP-Al 0 239 400 and international application WO 90/07861.
Further sources of dies to be ed in ance with the present invention are so-
called xenogeneic antibodies. The l principle for the production of xenogeneic antibodies
such as like antibodies in mice is bed in, e. g., international applications W0
91/10741, WO 94/02602, WO 96/34096 and WO 96/33735. As discussed above, the antibody
of the invention may exist in a variety of forms besides complete antibodies; including, for
example, Fv, Fab and , as well as in single chains; see 6.g. international application WO
88/09344. In one embodiment therefore, the antibody of the present invention is provided,
which is selected from the group consisting of a single chain FV fragment , a F(ab')
fragment, a F(ab) fragment, and a F(ab')2 fragment.
The dies of the present invention or their corresponding immunoglobulin chain(s) can be
further d using conventional ques known in the art, for example, by using amino
acid deletion(s), insertion(s), substitution(s), addition(s), and/or recombination(s) and/or any
other modification(s) known in the art either alone or in combination. Methods for introducing
such modifications in the DNA sequence underlying the amino acid sequence of an
immunoglobulin chain are well known to the person skilled in the art; see, e.g., Sambrook,
Molecular Cloning A Laboratory Manual, Cold Spring Harbor Laboratory (1989) NY. and
Ausubel, Current Protocols in Molecular Biology, Green Publishing Associates and Wiley
Interscience, NY. (1994). Modifications of the dy of the ion include chemical
and/or enzymatic derivatizations at one or more constituent amino acids, including side chain
modifications, backbone ations, and N— and C-terminal modifications including
acetylation, hydroxylation, methylation, amidation, and the attachment of carbohydrate or lipid
moieties, cofactors, and the like. Likewise, the present invention asses the production
of chimeric proteins which se the described antibody or some fragment thereof at the
amino terminus fused to heterologous molecule such as an immunostimulatory ligand at the
carboxyl terminus; see, e.g, international application WO 00/30680 for corresponding
technical details.
The antibodies of the present invention may also e additional modifications which
ze their therapeutic potential. These modifications comprise but are not limited to
modifications to the amino acid sequence of the antibody (e.g, the variable regions) and post-
translational modifications. Post-translational modifications (PTMs) are chemical
modifications that play a key role in functional proteomics, because they regulate activity,
localization and interaction with other cellular molecules such as proteins, nucleic acids, lipids,
and cofactors. Therefore, the zation of the antibodies may provide several advantages
such as an improved ity during storage as well as pharmacokinetics and/or
pharmacodynamics profile such as the in vivo or in vitro ating time of the antibody,
increased solubility, stability, increased affinity to the , decreased off-rate, an improved
or fiinction of the constant region (Fc region) and safety profile ofthe antibody, such as a
decreased immunogenicity, or reduced susceptibility to posttranslational modifications, as
shown 6. g. in Igawa et al., MAbs 3 (2011), 243-52. Accordingly, in one embodiment of the
present invention the anti-HTT dy, HTT-binding fragment, synthetic or biotechnological
variant thereof can be optimized, n at least one amino acid in the CDR or variable region,
which is prone to modifications ing but are not limited to acetylation, acylation, ADP-
ribosylation, amidation, deamidation, covalent attachment of flavin, covalent attachment of a
heme moiety, covalent attachment of a nucleotide or nucleotide derivative, covalent ment
of a lipid or lipid derivative, covalent attachment of phosphotidylinositol, cross-linking,
cyclization, disulfide bond formation, isomerization, demethylation, formation of covalent
cross—links, ion of cysteine, formation of pyroglutamate, formylation, y-carboxylation,
glycosylation, GPI anchor formation, hydroxylation, hydrolysis, iodination, methylation,
myristoylation, ion, pegylation, proteolytic processing, phosphorylation, prenylation,
racemization, selenoylation, sulfation, transfer-RNA mediated addition of amino acids to
proteins such as arginylation, and ubiquitination (see, e.g., Creighton, "Proteins: Structures and
Molecular ties," 2nd eds, Freeman and Co., NY, 1992; "Postranslational Covalent
Modification ofProteins," Johnson, eds., Academic Press, New York, 1983; Seifter et al. Meth.
Enzymol. 182 (1990), 6; Rattan et al., Ann. NY. Acad. Sei. 663 (1992) 48-62) is
substituted by a d amino acid that lack such alteration or wherein at least one
carbohydrate moiety is deleted or added chemically or enzymatically to the antibody. In a
preferred embodiment the modifications are selected from the group consisting of
ylation, ion, deamination, peptide bond cleavage, iso—aspartate formation and/or
unpaired cysteine. Additional modification that optimize the utility of the HTT-antibodies or
g molecules as a eutic agent are well known in the art and bed e.g. in Igawa
et al., MAbs 3 (2011), 243-52 which disclosure t is incorporated herein. Means of adding
or deleting carbohydrate moieties can be achieved chemically or enzymatically and is bed
in detail in e. g. Berg et a1. "Biochemistry" 5th eds W H Freeman, New York 2002; WO
87/05330; Aplin et al., CRC Crit. Rev. Biochem., 22 (1981), 259-306; Hakimuddin et al., Arch.
Biochem. Biophys, 259 (1987), 10-52; Edge et al., Anal. Biochem., 118 (1981), 131;
Thotakura et al., Meth. Enzymol. 138. (1987), 350.
Additionally, the present invention encompasses peptides including those containing a binding
molecule as described above, for example containing the CDR3 region of the variable region
of any one of the mentioned antibodies, in particular CDR3 of the heavy chain since it has
frequently been observed that heavy chain CDR3 (HCDR3) is the region having a greater
degree of variability and a predominant participation in antigen—antibody interaction. Such
peptides may easily be synthesized or produced by inant means to produce a binding
agent useful according to the invention. Such methods are well known to those of ordinary skill
in the art. Peptides can be synthesized for example, using automated peptide synthesizers which
are commercially available. The peptides can also be produced by recombinant ques by
incorporating the DNA expressing the peptide into an expression vector and transforming cells
with the expression vector to produce the peptide.
Hence, the present invention relates to any binding molecule, e.g., an antibody or binding
fragment thereof which is oriented towards the TT antibodies and/or antibodies capable
of binding mutated and/or aggregated HTT species and/or fragments thereof of the present
invention and displays the mentioned properties, 2'. e. which specifically recognizes HTT and/or
mutated and/or ated HTT species and/or nts thereof Such antibodies and binding
molecules can be tested for their binding specificity and affinity by ELISA and
immunohistochemistry as described herein, see, e.g., the Examples. These characteristics of the
antibodies and binding molecules can be tested by Western Blot as well.
As an alternative to obtaining immunoglobulins directly from the culture of B cells or memory
B cells, the cells can be used as a source of rearranged heavy chain and light chain loci for
subsequent expression and/or genetic manipulation. Rearranged antibody genes can be reverse
transcribed from appropriate mRNAs to produce cDNA. If desired, the heavy chain constant
region can be exchanged for that of a different isotype or eliminated altogether. The variable
regions can be linked to encode single chain Fv s. Multiple Fv regions can be linked to
confer binding ability to more than one target or ic heavy and light chain combinations
can be employed. Once the genetic material is available, design of analogs as described above
which retain both their y to bind the desired target is straightforward. Methods for the
cloning of antibody variable regions and generation of recombinant antibodies are known to the
person skilled in the art and are described, for example, Gilliland et al., Tissue Antigens 47
(1996), 1-20; Doenecke er al., Leukemia 11 (1997), 792.
Once the appropriate genetic material is obtained and, if d, modified to encode an analog,
the coding sequences, including those that encode, at a minimum, the variable regions of the
heavy and light chain, can be inserted into expression systems contained on vectors which can
be transfected into standard inant host cells. A variety of such host cells may be used;
for efficient sing, however, mammalian cells are preferred. Typical mammalian cell lines
useful for this e include, but are not limited to, CHO cells, HEK 293 cells, or NSO cells.
The tion of the antibody or analog is then undertaken by ing the modified
recombinant host under culture conditions appropriate for the growth of the host cells and the
expression of the coding sequences. The antibodies are then recovered by ing them from
the culture. The expression systems are preferably designed to include signal peptides so that
the resulting dies are secreted into the medium; however, intracellular production is also
In accordance with the above, the present invention also relates to a cleotide encoding
the antibody or equivalent binding molecule of the present invention, in case of the antibody
preferably at least a variable region of an immunoglobulin chain of the antibody described
above. Typically, said variable region encoded by the polynucleotide comprises at least one
complementarity determining region (CDR) of the VH and/or VL of the variable region of the
said antibody.
The person skilled in the art will readily appreciate that the le domain of the dy
having the described variable domain can be used for the construction of other
polypeptides or antibodies of desired specificity and biological function. Thus, the present
invention also encompasses polypeptides and antibodies comprising at least one CDR of the
above—described variable domain and which advantageously have substantially the same or
similar binding properties as the antibody described in the appended examples. The person
skilled in the art knows that binding affinity may be enhanced by making amino acid
substitutions within the CDRs or within the ariable loops ia and Lesk, J. Mol.
Biol. 196 (1987), 901-917) which partially overlap with the CDRs as defined by Kabat; see,
e.g., Riechmann, er al, Nature 332 , 323-327. Thus, the present invention also relates to
dies wherein one or more of the ned CDRs comprise one or more, preferably not
more than two amino acid substitutions. Preferably, the antibody ofthe invention comprises in
one or both of its immunoglobulin chains two or all three CDRs of the variable regions as set
forth in Fig. 1.
Binding les, 6.g. , antibodies, or antigen-binding fragments, synthetic or biotechnological
variants, or derivatives thereof of the invention, as known by those of ordinary skill in the art,
can comprise a constant region which mediates one or more effector filnctions. For example,
binding of the C1 component of complement to an antibody constant region may activate the
complement system. Activation of ment is important in the opsonization and lysis of
cell pathogens. The tion of complement also stimulates the inflammatory response and
may also be involved in autoimmune ensitivity. Further, antibodies bind to receptors on
various cells Via the Fc region, with a Fc receptor binding site on the antibody Fc region binding
to a PC receptor (FcR) on a cell. There are a number of Fc receptors which are specific for
different s of antibody, including IgG (gamma receptors), IgE (epsilon receptors), IgA
(alpha receptors) and IgM (mu receptors). Binding of antibody to Fc receptors on cell surfaces
triggers a number of important and diverse biological responses including engulfment and
destruction of antibody-coated particles, clearance of immune xes, lysis of antibody-
coated target cells by killer cells (called antibody-dependent cell-mediated xicity, or
ADCC), release of inflammatory mediators, placental transfer and control of immunoglobulin
production.
Accordingly, certain embodiments of the present invention include an antibody, or antigen-
g fragment, variant, or derivative thereof, in which at least a fraction of one or more of
the constant region domains has been deleted or otherwise altered so as to provide desired
biochemical characteristics such as reduced effector fianctions, the ability to non-covalently
dimerize, increased ability to localize at the site of HTT aggregation and deposition, reduced
serum half-life, or sed serum half-life when compared with a whole, unaltered antibody
of approximately the same genicity. For example, certain antibodies for use in the
diagnostic and treatment methods described herein are domain deleted antibodies which
comprise a polypeptide chain similar to an immunoglobulin heavy chain, but which lack at least
a portion of one or more heavy chain s. For instance, in certain antibodies, one entire
domain ofthe constant region of the modified antibody will be deleted, for example, all or part
of the CH2 domain will be d. In other embodiments, certain antibodies for use in the
diagnostic and treatment methods bed herein have a constant region, e.g, an IgG heavy
chain constant region, which is altered to eliminate ylation, referred to elsewhere herein
as aglycosylated or "agly" antibodies. Such "agly" antibodies may be prepared enzymatically
as well as by engineering the consensus glycosylation site(s) in the constant . While not
being bound by theory, it is believed that "agly" antibodies may have an improved safety and
stability profile in viva. Methods ucing aglycosylated antibodies, having desired effector
fiinction are found for example in international application , which is
incorporated by reference in its ty.
In certain antibodies, or antigen-binding nts, ts, or derivatives f described
, the Fc portion may be mutated to se effector function using techniques known in
the art. For example, the deletion or inactivation (through point mutations or other means) of a
constant region domain may reduce Fc receptor binding of the circulating modified antibody
thereby increasing HTT localization. In other cases it may be that constant region modifications
consistent with the t invention moderate complement binding and thus reduce the serum
half-life and nonspecific association of a conjugated cytotoxin. Yet other modifications of the
constant region may be used to modify disulfide linkages or oligosaccharide moieties that allow
for enhanced localization due to increased antigen specificity or antibody flexibility. The
ing physiological profile, bioavailability and other biochemical effects of the
modifications, such as HTT localization, biodistribution and serum half-life, may easily be
measured and quantified using well know immunological techniques without undue
experimentation.
In certain antibodies, or antigen-binding fragments, variants, or derivatives thereof described
herein, the Fc portion may be mutated or exchanged for alternative protein sequences to
increase the cellular uptake of antibodies by way of example by enhancing receptor-mediated
endocytosis of antibodies Via Fcy receptors, LRP, or Thyl receptors or by 'SuperAntibody
Technology', which is said to enable antibodies to be shuttled into living cells without harming
them (Expert Opin. Biol. Ther. (2005), 23 7-241). For example, the generation of filSlOIl proteins
of the antibody binding region and the cognate n ligands of cell surface receptors or bi-
or specific antibodies with a specific sequences binding to HTT as well as a cell surface
receptor may be engineered using techniques known in the art.
In certain antibodies, or antigen-binding fragments, variants, or derivatives thereof described
herein, the Fc portion may be mutated or exchanged for alternative n sequences or the
antibody may be chemically modified to se its blood brain barrier penetration.
Modified forms of antibodies, or antigen—binding fragments, variants, or derivatives thereof of
the invention can be made from whole precursor or parent antibodies using techniques known
in the art. Exemplary ques are sed in more detail herein. Antibodies, or n-
binding fragments, variants, or derivatives thereof of the ion can be made or
manufactured using ques that are known in the art. In n ments, antibody
molecules or fragments thereof are "recombinantly produced", z'.e., are produced using
inant DNA technology. Exemplary techniques for making antibody molecules or
fragments thereof are discussed in more detail elsewhere herein.
Antibodies, or antigen-binding fragments, variants, or derivatives thereofof the invention also
include derivatives that are modified, e.g., by the covalent attachment of any type of molecule
to the antibody such that covalent ment does not prevent the antibody from specifically
g to its cognate epitope. For example, but not by way of limitation, the antibody
derivatives e antibodies that have been modified, e. g., by glycosylation, acetylation,
pegylation, phosphorylation, ion, derivatization by known protecting/blocking groups,
proteolytic cleavage, linkage to a cellular ligand or other protein, etc. Any of numerous
chemical modifications may be d out by known techniques, including, but not limited to
specific al cleavage, acetylation, formylation, metabolic synthesis oftunicamycin, etc.
Additionally, the derivative may contain one or more non-classical amino acids.
In particular preferred embodiments, antibodies, or antigen-binding fragments, variants, or
derivatives thereof of the invention will not elicit a deleterious immune response in the animal
to be treated, e.g., in a human. In certain embodiments, binding molecules, e. g., antibodies, or
antigen-binding fragments thereof of the invention are derived from a t, e.g, a human
patient, and are subsequently used in the same species from which they are derived, e.g. , human,
alleviating or minimizing the occurrence of deleterious immune ses.
De-immunization can also be used to decrease the imrnunogenicity of an antibody. As used
herein, the term munization" includes alteration of an antibody to modify T cell es;
see, e.g., ational applications WO 98/52976 and WO 00/34317. For e, VH and VL
sequences from the starting antibody are analyzed and a human T cell epitope "map" from each
V region g the location of es in relation to complementarity determining regions
(CDRs) and other key residues within the sequence. Individual T cell epitopes from the T cell
epitope map are analyzed in order to identify alternative amino acid substitutions with a low
risk of altering activity of the final antibody. A range of alternative VH and VL sequences are
designed comprising combinations of amino acid substitutions and these sequences are
subsequently incorporated into a range of binding polypeptides, e.g., HTT—speciflc antibodies
or immunospecific fragments thereof for use in the diagnostic and treatment methods sed
herein, which are then tested for function. lly, between 12 and 24 variant antibodies are
generated and tested. Complete heavy and light chain genes sing modified V and human
C regions are then cloned into expression vectors and the subsequent plasmids introduced into
cell lines for the production ofwhole antibody. The antibodies are then compared in appropriate
biochemical and biological assays, and the optimal variant is identified.
Monoclonal antibodies can be prepared using a wide variety of techniques known in the art
including the use of hybridoma, recombinant, and phage display technologies, or a combination
thereof. For example, monoclonal dies can be ed using hybridoma techniques
including those known in the art and taught, for example, in Harlow et al., Antibodies: A
Laboratory Manual, Cold Spring Harbor Laboratory Press, 2nd ed. (1988); ling et al.,
in: Monoclonal Antibodies and T-Cell Hybridomas Elsevier, N.Y., 563-681 (1981), said
references incorporated by reference in their entireties. The term "monoclonal antibody" as used
herein is not limited to antibodies produced through oma technology. The term
"monoclonal antibody" refers to an antibody that is derived from a single clone, including any
otic, prokaryotic, or phage clone, and not the method by which it is ed. Thus, the
term "monoclonal antibody" is not d to antibodies produced through hybridoma
technology. In certain embodiments, antibodies of the present invention are derived from
human B cells which have been immortalized Via transformation with Epstein-Barr Virus, as
described herein.
In the well-known hybridoma process (Kohler et al., Nature 256 (1975), 495) the relatively
short-lived, or mortal, lymphocytes from a mammal, e.g. , B cells derived from a human subject
as described herein, are filSCd with an immortal tumor cell line (e.g. a myeloma cell line), thus,
producing hybrid cells or "hybridomas" which are both al and capable of producing the
genetically coded antibody ofthe B cell. The resulting hybrids are segregated into single c
s by selection, dilution, and re-growth with each individual strain comprising specific
genes for the formation of a single antibody. They produce antibodies, which are homogeneous
against a desired antigen and, in reference to their pure genetic parentage, are termed
"monoclonal".
Hybridoma cells thus prepared are seeded and grown in a suitable e medium that
preferably contains one or more nces that inhibit the growth or survival of the d,
parental myeloma cells. Those skilled in the art will appreciate that reagents, cell lines and
media for the formation, selection and growth of hybridomas are commercially available from
a number ofsources and standardized protocols are well established. Generally, culture medium
in which the hybridoma cells are growing is assayed for production of onal antibodies
against the desired antigen. The binding specificity of the monoclonal antibodies ed by
hybridoma cells is determined by in vitro assays such as immunoprecipitation,
radioimmunoassay (RIA) or enzyme-linked immunoabsorbent assay (ELISA) as described
herein. After hybridoma cells are identified that e antibodies of the desired specificity,
affinity and/or activity, the clones may be subcloned by limiting dilution procedures and grown
by standard methods; see, e.g., Goding, Monoclonal Antibodies: Principles and Practice,
Academic Press (1986), 59-103. It will further be appreciated that the onal antibodies
ed by the subclones may be separated from culture medium, ascites fluid or serum by
conventional purification procedures such as, for example, protein-A, ylapatite
chromatography, gel electrophoresis, dialysis or affinity chromatography.
In r embodiment, lymphocytes can be selected by micromanipulation and the variable
genes isolated. For example, peripheral blood mononuclear cells can be isolated from an
immunized or naturally immune mammal, e.g. a human, and cultured for about 7 days in vitro.
The cultures can be screened for specific IgGs that meet the screening criteria. Cells from
positive wells can be isolated. Individual ducing B cells can be isolated by FACS or by
identifying them in a complement-mediated hemolytic plaque assay. Ig-producing B cells can
be micromanipulated into a tube and the VH and VL genes can be amplified using, e. g., RT-
PCR. The VH and VL genes can be cloned into an antibody expression vector and transfected
into cells (e.g., otic or prokaryotic cells) for expression.
Alternatively, antibody-producing cell lines may be selected and cultured using ques well
known to the skilled artisan. Such techniques are described in a variety of tory manuals
and y publications. In this respect, techniques suitable for use in the invention as
described below are described in Current Protocols in Immunology, Coligan et al., Eds., Green
Publishing Associates and Wiley-Interscience, John Wiley and Sons, New York (1991) which
is herein incorporated by reference in its entirety, including supplements.
Antibody fragments that recognize specific epitopes may be ted by known techniques.
For e, Fab and F(ab')2 fragments may be produced recombinantly or by lytic
cleavage of immunoglobulin molecules, using enzymes such as papain (to produce Fab
fragments) or pepsin (to produce F(ab')2 fragments). F(ab')2 fragments contain the variable
region, the light chain constant region and the CH1 domain ofthe heavy chain. Such fragments
are sufficient for use, for example, in immunodiagnostic procedures ing coupling the
immunospecific ns of immunoglobulins to detecting reagents such as radioisotopes.
In one embodiment, an antibody of the invention comprises at least one CDR of an antibody
molecule. In r embodiment, an antibody of the invention comprises at least two CDRs
from one or more antibody molecules. In another embodiment, an antibody of the invention
comprises at least three CDRs from one or more dy les. In another embodiment,
an antibody of the invention comprises at least four CDRs from one or more antibody
molecules. In another embodiment, an antibody of the invention comprises at least five CDRs
from one or more antibody molecules. In another ment, an antibody of the invention
comprises at least six CDRs from one or more antibody molecules. Exemplary antibody
molecules comprising at least one CDR that can be included in the subject antibodies are
described herein.
Antibodies of the present invention can be produced by any method known in the art for the
sis of antibodies, in ular, by chemical synthesis or preferably by recombinant
expression techniques as described herein.
In one embodiment, an antibody, or antigen—binding fragment, variant, or derivative thereof of
the invention comprises a synthetic constant region wherein one or more domains are partially
or entirely deleted ("domain—deleted antibodies"). In certain embodiments compatible modified
antibodies will comprise domain deleted constructs or variants wherein the entire CH2 domain
has been removed (ACH2 constructs). For other ments a short connecting peptide may
be substituted for the deleted domain to provide flexibility and freedom of movement for the
variable region. Those skilled in the art will appreciate that such constructs are particularly
preferred due to the tory properties of the CH2 domain on the lic rate of the
antibody. Domain deleted constructs can be derived using a vector ng an IgG1 human
constant domain, see, e. g., international applications WO 02/060955 and WO 02/096948A2.
This vector is engineered to delete the CH2 domain and provide a synthetic vector expressing
a domain deleted IgG1 constant region.
In certain embodiments, antibodies, or antigen-binding fragments, variants, or derivatives
thereof of the present ion are minibodies. Minibodies can be made using methods
described in the art, see, e.g., US patent 5,837,821 or ational ation WO 94/09817.
In one embodiment, an dy, or antigen-binding fragment, variant, or derivative thereof of
the invention comprises an immunoglobulin heavy chain having deletion or substitution of a
few or even a single amino acid as long as it permits association between the ric
subunits. For example, the mutation of a single amino acid in selected areas of the CH2 domain
may be enough to ntially reduce Fc binding and thereby increase HTT localization.
Similarly, it may be desirable to simply delete that part of one or more constant region domains
that control the effector function (e. g. complement binding) to be modulated. Such partial
deletions of the constant s may improve selected characteristics of the antibody (serum
half-life) while leaving other desirable functions associated with the subject constant region
domain intact. er, as alluded to above, the nt regions of the disclosed antibodies
may be synthetic through the mutation or substitution of one or more amino acids that enhances
the profile of the resulting construct. In this respect it may be possible to disrupt the activity
provided by a conserved g site (6. g. Fc binding) while substantially maintaining the
configuration and immunogenic profile of the modified dy. Yet other embodiments
comprise the addition of one or more amino acids to the constant region to enhance desirable
characteristics such as an effector n or provide for more cytotoxin or carbohydrate
attachment. In such embodiments it may be desirable to insert or replicate specific sequences
derived from selected constant region domains.
The present invention also provides antibodies that se, consist essentially of, or consist
of, variants (including derivatives) of antibody molecules (e.g, the VH regions and/or VL
regions) described herein, which antibodies or fragments thereof immunospecifically bind to
HTT. Standard techniques known to those of skill in the art can be used to introduce mutations
in the nucleotide sequence encoding an dy, including, but not d to, site-directed
mutagenesis and diated mutagenesis which result in amino acid substitutions.
Preferably, the variants (including derivatives) encode less than 50 amino acid substitutions,
less than 40 amino acid substitutions, less than 30 amino acid substitutions, less than 25 amino
acid substitutions, less than 20 amino acid substitutions, less than 15 amino acid substitutions,
less than 10 amino acid substitutions, less than 5 amino acid substitutions, less than 4 amino
acid substitutions, less than 3 amino acid substitutions, or less than 2 amino acid substitutions
ve to the reference VH region, VH-CDRl, VH-CDR2, VH-CDR3, VL region, VL-CDRl,
VL-CDRZ, or VL-CDR3. A "conservative amino acid tution" is one in which the amino
acid residue is replaced with an amino acid residue having a side chain with a similar charge.
Families of amino acid residues having side chains with similar charges have been defined in
the art. These families include amino acids with basic side chains (e.g., lysine, arginine,
ine), acidic side chains (e. g., aspartic acid, glutamic acid), uncharged polar side chains
(e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine), ar side chains
(e.g, alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, phan), beta-
branched side chains (e.g., threonine, valine, isoleucine) and aromatic side chains (e. g.,
tyrosine, alanine, tryptophan, histidine). Alternatively, mutations can be introduced
randomly along all or part of the coding sequence, such as by tion mutagenesis, and the
resultant s can be screened for biological activity to identify mutants that retain activity
(e. g., the ability to bind HTT and/or mutated and/or aggregated HTT species and/or fragments
thereof).
For example, it is possible to introduce mutations only in framework regions or only in CDR
regions of an antibody molecule. Introduced mutations may be silent or neutral missense
mutations, e.g., have no, or little, effect on an antibody's ability to bind antigen, indeed some
such mutations do not alter the amino acid ce whatsoever. These types ofmutations may
be usefiJl to optimize codon usage, or improve a oma's antibody production. Codon—
optimized coding regions encoding dies of the t invention are disclosed elsewhere
herein. Alternatively, non-neutral missense mutations may alter an antibody’s ability to bind
antigen. The location of most silent and neutral missense mutations is likely to be in the
ork s, while the location of most non-neutral se ons is likely to be in
CDR, though this is not an absolute requirement. One of skill in the art would be able to design
and test mutant molecules with desired properties such as no alteration in antigen-binding
activity or alteration in binding activity (e.g., improvements in antigen-binding activity or
change in antibody specificity). Following mutagenesis, the encoded protein may routinely be
expressed and the functional and/or biological ty of the encoded protein, (e.g., ability to
immunospeciflcally bind at least one epitope of HTT and/or mutated and/or aggregated HTT
species and/or fragments thereof) can be determined using techniques described herein or by
routinely modifying techniques known in the art.
111. Polynucleotides Encoding Antibodies
A polynucleotide encoding an antibody, or antigen-binding fragment, variant, or derivative
thereof can be composed of any polyribonucleotide or polydeoxribonucleotide, which may be
unmodified RNA or DNA or modified RNA or DNA. For example, a polynucleotide encoding
an antibody, or antigen-binding fragment, variant, or derivative thereof can be composed of
single- and double-stranded DNA, DNA that is a mixture of single- and double-stranded
regions, single- and double-stranded RNA, and RNA that is mixture of single- and double-
ed s, hybrid molecules comprising DNA and RNA that may be single-stranded or,
more typically, double-stranded or a mixture of single-stranded and double-stranded regions.
In addition, a polynucleotide encoding an antibody, or antigen-binding fragment, t, or
tive thereof can be composed of triple—stranded regions sing RNA or DNA or both
RNA and DNA. A polynucleotide encoding an antibody, or n-binding fragment, variant,
or derivative thereofmay also contain one or more modified bases or DNA or RNA backbones
modified for stability or for other reasons. "Modified" bases e, for example, tritylated
bases and unusual bases such as inosine. A variety of modifications can be made to DNA and
RNA; thus, "polynucleotide" embraces chemically, tically, or metabolically modified
forms.
An isolated polynucleotide encoding a non-natural variant of a polypeptide derived from an
immunoglobulin (e.g., an immunoglobulin heavy chain portion or light chain portion) can be
created by introducing one or more nucleotide substitutions, additions or ons into the
tide sequence of the immunoglobulin such that one or more amino acid substitutions,
additions or deletions are introduced into the encoded protein. Mutations may be introduced by
standard techniques, such as site-directed mutagenesis and PCR-mediated mutagenesis.
Preferably, conservative amino acid tutions are made at one or more non-essential amino
acid residues.
As is well known, RNA may be isolated from the original B cells, oma cells or from
other transformed cells by standard techniques, such as a inium isothiocyanate extraction
and precipitation followed by centrifugation or chromatography. Where desirable, mRNA may
be isolated from total RNA by standard techniques such as chromatography on oligo dT
cellulose. Suitable techniques are familiar in the art. In one embodiment, cDNAs that encode
the light and the heavy chains of the antibody may be made, either simultaneously or separately,
using reverse transcriptase and DNA polymerase in accordance with well-known methods. PCR
may be initiated by consensus constant region primers or by more specific s based on the
published heavy and light chain DNA and amino acid sequences. As sed above, PCR also
may be used to isolate DNA clones encoding the antibody light and heavy chains. In this case
the libraries may be screened by consensus primers or larger homologous , such as
human constant region probes. DNA, typically plasmid DNA, may be isolated from the cells
using techniques known in the art, restriction mapped and sequenced in accordance with
standard, well known techniques set forth in detail, e.g., in the foregoing references relating to
recombinant DNA techniques. Of course, the DNA may be synthetic according to the present
invention at any point during the isolation process or subsequent analysis.
In this context, the present invention also relates to a polynucleotide encoding at least the
binding domain or variable region of an globulin chain of the antibody of the t
invention. In one embodiment, the present invention provides an isolated polynucleotide
comprising, consisting essentially of, or consisting of a nucleic acid encoding an
immunoglobulin heavy chain variable region (VH), where at least one of the CDRs of the heavy
chain variable region or at least two of the VH-CDRs of the heavy chain variable region are at
least 80%, 85%, 90%, or 95% identical to reference heavy chain VH-CDRI, VH-CDRZ, or VH-
CDR3 amino acid sequences from the antibodies disclosed herein. atively, the VH-CDRI,
VH-CDRZ, or VH-CDR3 regions of the VH are at least 80%, 85%, 90%, or 95% identical to
reference heavy chain VH-CDRI, VH-CDRZ, and VH-CDR3 amino acid sequences from the
antibodies disclosed herein. Thus, according to this embodiment a heavy chain variable region
of the invention has I, VH-CDRZ, or VH-CDR3 polypeptide sequences related to the
polypeptide sequences shown in Fig. 1.
In another embodiment, the present invention es an ed polynucleotide sing,
consisting essentially of, or consisting of a nucleic acid encoding an immunoglobulin light chain
variable region (VL), where at least one of the VL-CDRS of the light chain variable region or at
least two of the VL-CDRs of the light chain variable region are at least 80%, 85%, 90%, or 95%
identical to reference light chain VL-CDRI, VL-CDRZ, or VL-CDR3 amino acid sequences from
the antibodies disclosed herein. Alternatively, the VL-CDRl, VL-CDRZ, or VL-CDR3 regions
ofthe VL are at least 80%, 85%, 90%, or 95% identical to reference light chain VL-CDRl, VL-
CDR2, and VL-CDR3 amino acid sequences from the antibodies disclosed herein. Thus,
according to this ment a light chain variable region of the invention has VL-CDRl, VL-
CDR2, or VL-CDR3 polypeptide ces related to the polypeptide sequences shown in Fig.
1.
In another ment, the present invention provides an isolated polynucleotide comprising,
consisting essentially of, or consisting of a nucleic acid encoding an globulin heavy
chain variable region (VH) in which the VH-CDRI, VH-CDRZ, and VH-CDR3 s have
polypeptide sequences which are identical to the VH-CDRI, VH-CDRZ, and VH-CDR3 groups
shown in Fig. 1.
As known in the art, "sequence identity" between two polypeptides or two polynucleotides is
determined by comparing the amino acid or nucleic acid ce of one polypeptide or
polynucleotide to the sequence of a second polypeptide or cleotide. When discussed
herein, whether any particular polypeptide is at least about 40%, 45%, 50%, 55%, 60%, 65%,
70%, 75%, 80%, 85%, 90%, or 95% identical to another polypeptide can be determined using
s and computer programs/software known in the art such as, but not limited to, the
BESTFIT program (Wisconsin Sequence Analysis Package, n 8 for Unix, Genetics
Computer Group, University Research Park, 575 Science Drive, Madison, WI 53711).
BESTFIT uses the local homology algorithm of Smith and an, Advances in d
Mathematics 2 , 482-489, to find the best segment ofhomology n two sequences.
When using BESTFIT or any other sequence alignment program to determine whether a
particular sequence is, for example, 95% identical to a reference ce according to the
present invention, the parameters are set, of course, such that the percentage of identity is
calculated over the full length of the reference polypeptide sequence and that gaps in homology
ofup to 5% of the total number of amino acids in the reference sequence are allowed.
In a preferred embodiment of the present ion, the cleotide comprises, consists
essentially of, or consists of a nucleic acid having a polynucleotide sequence of the VH or VL
region of an anti-HTT antibody and/or antibody izing a polyP-region in the HTT and/or
mutated and/or ated HTT species and/or fragments thereof as depicted in and Table 11.
Additionally, in one embodiment the polynucleotide comprises, consists essentially of, or
consists of a nucleic acid having a polynucleotide ce of the VH or VL region of an anti-
HTT antibody and/or antibody recognizing the P-rich—region in the HTT and/or mutated and/or
aggregated HTT species and/or fragments thereof as depicted in and Table III and/or further
recognizing the C-terminal region in the HTT and/or mutated and/or aggregated HTT species
and/or fragments thereof as depicted in and Table IV and/or further recognizing the Q/P-rich
region of HTT and/or mutated and/or aggregated HTT species and/or fragments thereof as
depicted in Table VII. In addition, in one embodiment the polynucleotide comprises, consists
ially of, or consists of a nucleic acid having a polynucleotide sequence of the VH or VL
region of an anti-HTT antibody and/or dy recognizing the HTT and/or mutated and/or
aggregated HTT species and/or fragments thereof as depicted in and Table V. Furthermore, in
one embodiment the cleotide comprises, consists ially of, or consists of a nucleic
acid having a polynucleotide sequence of the VH or VL region of an anti-HTT antibody and/or
antibody recognizing the N—terminal region in the HTT and/or mutated and/or aggregated HTT
species and/or fragments thereof as depicted in and Table VI. In on, in one embodiment
the polynucleotide comprises, consists essentially of, or consists of a nucleic acid having a
polynucleotide sequence of the VH or VL region of an anti-HTT antibody and/or dy
recognizing the HTT and/or mutated and/or aggregated HTT species and/or fragments thereof
as depicted in and Table V. onally or alternatively, in one embodiment the polynucleotide
comprises, consists essentially of, or consists of a nucleic acid having a polynucleotide
sequence of the VH or VL region of an anti-HTT antibody and/or antibody as depicted in and
Table VIII.
In this respect, the person skilled in the art will readily appreciate that the polynucleotides
encoding at least the variable domain of the light and/or heavy chain may encode the le
domain of both immunoglobulin chains or only one. In one embodiment therefore, the
polynucleotide comprises, consists essentially of, or consists of a nucleic acid having a
polynucleotide sequence of the VH and the VL region of an anti-HTT antibody and/or fragments
thereof as depicted in Table II, III, IV, V, VI, VII or VIII.
Table II: Nucleotide ces of the VH and VL region of antibodies recognizing an
epitope of a polyP-region of HTT, z'.e exon 1 in aggregated form.
Antibody Nucleotide sequences ofvariable heavy (VH) and variable light (VL) chains
.33C11- VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTTGTCCAGCCTGGGAACTCC
CTGAGACTCTCCTGTGCAGCGTCTGGATTCAGGTTCAGTGACTTTGGCATGC
ACTGGGTCCGCCAGGCTCCAGGCAAGGGACTGGAGTGGCTGGCACTTATAT
ATGGAGGGTATAAGTACTATGCAGACTCCGTGAAGGGCCGATTCA
CCATCTCCAGAGACAATTCCAAGAATACGATGTTTCTACAAATGAACAGCCT
GAGAGCCGAGGACACGGCTGTTTATTACTGTGCGACCCACCTAGAATATTGC
AGTAGAACCACCTGCTATCTCGGCCACTGGGGCCAGGGAACCCTGGTCACC
GTCTCCTCG
SEQ ID NO: 1
NI-302.33C11- VK GACATCCAGTTGACCCAGTCTCCGTCCTTCCTATCTGCGTCTGTGGGAGACA
CAGTCACCTTCACTTGCCGGGCCAGTCAGGGCATTAGCGATTATTTAGCCTG
GTTTCAGCAGAAACCAGGGATTGCCCCTAAGCTCCTGATCTATGCTGCGTCC
ACTTTGCAAACCGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACA
GAATTCACTCTCACAATCCGCAGCCTGCAGTCTGAAGATTTTGGAACTTATT
ACTGTCAGCAGCTTAAAACTTACCCGTACACTTTTGGCCAGGGGACCAAGGT
GGAAATCAAA
SEQ ID NO: 3
NI-302.74C11- VH CAGCTGGTGCAGTCTGGGACTGAGGTGCAGAAGCCTGGGGCCTCA
GTAAAAGTCTCCTGCAAGGCTTCTGGATACAGTTTCACCGGCTACTTTTTGC
ACTGGGTACGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGGTGGATCA
ACCCTAACAGTGGTGACACAAACTATGCAGAGAAGTTTCGGGGCAGAATCA
TCATGACCAGGGACACGTCTGTCAGCACAGCCCACATGGAGTTGAGCAGCC
TGAGATTTGACGACACGGCCCTATATTACTGTACGAGAGAGGCCCCTGACCC
GGGCGCTGAGACGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTC
SEQ ID NO: 25
NI—302.74C1 1- VL GTGCTGACTCAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGG
TCACCTGCTCTGGAGATGCAGTGCCAAAGCAGTATATTTATTGGTA
CCAGCAGAAGCCAGGCCAGGCCCCTATTCTGGTGATATATAAAGACACTCA
TTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCAGGGACAACA
GTCACGTTGACCATAACTGGCGTCCAGGCAGACGACGAGGGTGACTATTAC
TGTCAATCAGCAGACAGTAGTGCTACTTGGGTGTTCGGCGGAGGGACCAAA
TTGACCGTCCTA
SEQ ID NO: 27
NI-302.15F9- VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCACGCCGGGGGGGTCC
CTGAGACTCTCGTGTGAGGCCTCTGGATTTCTCTTCAAGAATTCTAGCATGA
ACTGGGTCCGTCAGACTCCGGGGAAGGGGCTGGAGTGGGTCTCGTCCATTG
ACACTTCTGCTACAAATTATAAGTATTATGCAGACTCTGTGAAGGGCCGATT
TACCATCTCCAGGGATGACGCCACCAACTCTCTCTATCTGCAAATGAATAGC
CTGCGAGCCGACGACACGGCTACTTATTACTGTGCGCGAGGTTATTATACCC
ACTTTGACTACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 29
NI-302.15F9— VK GATGTTGTGATGACTCAGTCTCCACAGACCCTGTCCGTCAGCCTTGGACAGG
CGGCCTCCATCTCCTGCAGGTCGAGTCAAAGCCTCTTGTATCGTGATAACAA
CACATACTTGAATTGGTTTCACCAGAGGCCAGGCCAATCTCCAAGGCGCCTC
ATTTATAGGGCTTCTGACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCG
GTGGGTCAGGCACTGATTTCACATTGAAAATCAGTGGAGTGGAGGCTGAAG
GCACTTATTACTGCATGCAAGGAACACACTGGCCTCGGACGTTCGG
CCAAGGGACCAAGGTGGAGATCAAA
SEQ ID NO: 31
NI-302.39G12- VH GAGGTGCAGCTGGTGCAGTCTGGGGGAGGCTTGGTCCACCCTTGGGGGTCC
CTGAGACTCTCCTGTGCAGCCTCTGGATTCAGCGTCTCTAATTACGCCATAA
CTTGGGTCCGCCGGGCTCCAGGGAAGGGGCTGCAATATATTTCAGTAATTTA
TCGTGATGGCAGGACATACTACGGAGACTCCGTGAGGGGCCGCTTCACCAT
CTCTAGGGACGATTCCAAGAACACTCTCTATCTTCAAATGAACAGCCTGAGA
TTTGAGGACACGGCTGTGTATTACTGTGCGAGAGCGCACGGCCAATATTACT
TGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCG
SEQ ID NO: 33
NI-302.39G12- VK GATGTTGTGATGACTCAGTCTCCACTCTCCCTGTCCGTCAGCCCTGGAGAGC
CGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTACATAGTAATGGATA
CAACTATTTGGATTGGTACCGGCAGAAACCAGGGCAGTCTCCACAGCTCCTG
ATCTATTTGAGTTCTAATCGGCCCTCCGGGGTCCCTGATAGGTTCAGTGCCA
GTGGATCAGGCACAGAGTTCACACTGCAAATCAGCAGAGTGGAGGCTGAGG
ATGTTGGGGTTTATTACTGCATGCAATCTCTGCAAACGTTCACTTTCGGCGG
AGGGACCAAAGTGGATATCAAA
SEQ ID NO: 35
NI-302.11A4- VH GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCGGGGGGGTCC
CTGAGACTCTCCTGTGCAGCCTCTGGGTTCCCCGTCAGTAGCAGTTACATGA
GCTGGGTCCGCCAGGCTCCAGGAGAGGGGCTGGAGTGGGTCTCAGTTCTTTA
TAGAGACGGTGACACATACTACGCAGACTCCGTGCAGGGCCGATTCACCAT
CTCCAGAGACAATTCCCAGAACACGTTCTATCTTCAAATGAACAGCCTGAAA
GCCGAGGACACGGCCGTGTATTACTGTGCGGGTGATAGAAGGTCGTCACAC
TACTATTACGGTATGGACGTCTGGGGCCAGGGGACCACGGTCACCGTCTCCT
SEQ ID NO: 37
NI-302.11A4- VK GTGATGACACAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGAGAAA
GAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTCGC
CTGGTACCAACAAAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTACG
TCCCGCAGGGCCACTGCCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGG
ACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGT
ATTACTGTCAACAGTATGGTAGCTCGTGGACGTTCGGCCCAGGGACCAAGGT
GGAGATCAAA
SEQ ID NO: 39
NI-302.22H9— VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCACCCTTGGGGGTCC
CTGAGAGTCTCCTGTGCAGCCTCTGGATTCAGCGTCTCTAATTACGCCATAA
CTTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAATATATTTCAGTGATTTA
TCGTGATGGCAGGACATACTACGGAGACTCCGTGAGGGGCCGCTTCACCAT
CTCTAGGGACGATTCCAAGAACACTATCTATCTTCAAATGAACAGCCTGAGA
TTTGAGGACACGGCTGTGTATTACTGTGCGAGAGCGCACGGCCAATATTATT
ATGGTGTGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCG
SEQ ID NO 41:
NI-302.22H9- VK GATGTTGTGATGACTCAGTCTCCACTCTCCCTGTCCGTCAGCCCTGGAGAGC
CGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTACATAGTAATGGATA
TTTGGATTGGTACCGGCAGAAACCAGGGCAGTCTCCACAACTCCTG
ATCTATTTGAATTCTAATCGGGCCTCCGGGGTCCCTGATAGGTTCAGTGGCA
GTGGATCAGGCACAGAGTTCACACTGACAATCAGCAGAGTGGAGGCTGAGG
ATGTTGGGGTTTATTACTGCATGCAATCTCTGCAAACGTTCACTTTCGGCGG
AGGGACCAAGGTGGAGATCAAA
SEQ ID NO: 43
NI-302.44D7- VH GAGGTGCAGCTGGTGCAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCC
CTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGA
GTTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGGTATTG
GTGATACTAGCACATATTACGCAGACTCCGTGAAGGGCCGCTTCAC
CGTCTCCAGAGACATTTCCAAGAACACGCTGTATCTGCAAATGAATAGCCTG
AGGGCCGAGGACACGGCCGTATATTACTGCGCGAAAGGTACCAGGGACTAT
ATGGACGTCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCG
SEQ ID NO: 45
NI-302.44D7- VK CAGACTGTGGTGACTCAGGAGCCATCGTTCTCAGTGTCCCCTGGAGGGACAG
TCACACTCACTTGTGGCTTGAGTTCTGGCTCAGTTTCTACTAGTTACTACCCC
AGCTGGTACCAGCAGACCCCAGGCCGGGCTCCACGCACGCTCATCTACAGC
ACAAACACTCGCTCTTCTGGGGTCCCTGATCGCTTCTCTGGCTCCATCCTTGG
GAACAAGGCTGCCCTCACCATCACGGGGGCCCAGGCAGATGATGAATCTGA
CTGTGTGCTGTTTATGGGTAGTGGCATTGGGGTGTTCGGCGGAGGG
ACCAGGCTGACCGTCCTA
SEQ ID NO: 47
NI—302.37C12- VH GAGGTGCAGCTGGTGGAGTCTGGTGGAGGCTTGGTCCAGCCTGGGGGGTCC
CTGAGACTCTCTTGTGTTGCCTCTGCACTCACCGTCACTAACAGCCAAATGA
TCCGCCGGGCTCCAGGGAGGGGGTTGGAGTGGGTCTCAGTTATTTA
CACCAGTGGTAGTGCATACTACGCAGACTCCGTGAAGGGCAGATTCACCAT
CTCCAGAGACAATTCCAAGAACACAGTGTTTCTTCAAATGAACAGCCTGAG
AGTCGAAGACACGGCTGTGTATTACTGTGCGAAAGGCCCATCAGCCTATTAT
TACGGTTTGGACCTTTGGGGCCAAGGGACCACGGTCACCGTCTCCTCG
SEQ ID NO: 49
NI-302.37C12- VK GATATTGTGATGACTCAATCACCACTCTCCCTGCCCGTCACCCCTGGAGAGC
CCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATA
CAACTATTTGGATTGGTACCTGCAGAAGCCGGGGCAGTCTCCACAGCTCCTG
ATCTATTTGGGTTCTACTCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCA
GTGGATCAGGCACAGATTTTACACTGAAGATCAGCAGAGTGGAGGCTGAGG
ATGTTGGGGTTTATTACTGCATGCAAGGTCTACAGACGTACACTTTTGGCCA
GGGGACCAAGCTGGAGATCAAA
SEQ ID NO: 51
NI—302.55D8- VH CAGGTGCAGCTGGTGCAGTCTGGGTCTGAGGTGAAGAAGCCTGGGGCCTCA
GTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGACTACTATATAC
ACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCA
ACCCTAACAATGGTGGCACAAACTATGCACAGAACTTTCAGGGCTGGGTCA
CCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTCAGCAGAC
TGAGATCTGACGACACGGCCGTCTATTACTGTGCGAGAGTGGGGGGCGAGC
TGCTACGAGAAGGCGGCTATCACTACTACATGGACGTCTGGGGCAAGGGGA
CCACGGTCACCGTCTCCTCG
SEQ ID NO: 53
NI-302.55D8- VL CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGG
GTCACCATCTCCTGCACTGGGAACAGCTCCAACATCGGGGCAGGTTATGATG
GGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTTTGA
TAATACCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCT
GGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTA
ATTATCACTGCCAGTCCTATGACAACAGCCTGAGTGGTTCTTGGGTGTTCGG
CGGAGGGACCAAGCTGACCGTCCTA
SEQ ID NO: 55
NI-302.7A8- VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTCGGTCCAGCCTGGGGGGTCC
CTGAGACTCTCCTGTGTAGCCTCTGGATTCATATTTAGAAACAGTTGGATGA
CCTGGGTCCGCCAGGATCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAA
AGGAAGATGGAAGTCGGACATACTATGTGGACTCTGTGAAGGGCCGATTCA
CCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAGATGAACAGCC
TGAGAGCCGAGGACACGGCTGTATATTACTGTGCGAGAGGAGATTATAATT
CGGGCATCTATTACTTTCCCGGGGACTACTGGGGCCAGGGCACCCTGGTCAC
CGTCTCCTCG
SEQ ID NO: 57
NI—302.7A8- VK GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGC
CGGCCTCCATCTCCTGTAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAA
CACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAGTCTCCAAGGCGCCTC
ATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCA
GTGGGTCAGGCACTGATTTCACACTGAGAATCAGCAGGGTGGAGGCTGAGG
ATGTTGGCATTTATTACTGCATGCAAGGTACACACTGGCCTGGGACGTTCGG
CCAAGGGACCAAGGTGGAGATCAAA
SEQ ID NO: 59
NI-302.78H12- VH CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACC
CTGTCCCTCACCTGTCTTGTCTCTAGTTACTCCATCAGCAATGGTTACTACTG
GGGCTGGATTCGGCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTAT
TAATGGGAACACCTATTACAACCCGTCCCTCAAGAGTCGAGTCATC
ATTTCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGTTGAGGTCTGTGA
CCGCCGCAGACACGGCCGTGTACTACTGTGCGATGCCAAGTGCCACCTATTA
TTATGGTTCGGGGACTCAATTCCATGCGTTTGATGTCTGGGGCCAAGGGACC
ACGGTCACCGTCTCCTCG
SEQ ID NO: 61
NI-302.78H12- VL CAGTCTGCCCTGACTCAGCCTCGCTCAGTGTCCGGGTCTCCTGGACAGTCAG
TCACCATCTCCTGCACTGGAACCAGCAGAGATGTTGGTAATTATAACTATGT
CTCCTGGTACCAACAACACCCAGGCGAAGTCCCCAAACTCATAATTTATGAT
GTCAGTGAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTG
GCAACACGGCCTCGCTGACCATCTCTGGGCTCCAGGCTGAGGATGAGGCTG
ACTATTACTGCTGCTCATATGCTGGCAGTTACACCTTCGAGGTATTTGGCGG
CAAGCTGACCGTCCTA
SEQ ID NO: 63
NI-302.71F6- VH CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTATTGAAGCCTTCGGAGACC
CTGTCCCTCACGTGCGCTGTCTATGGTGGGTCCCTCAGTGGTTACTACTGGA
GCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATAGGGGAAGTCA
ATCATAGTGGAGGCACCAACCTCAATTCGTCCCTCAAGAGTCGAGTCATCAT
TTCAGTAGACAAGTCCAAGAAGCAGTTCTCCCTGAAACTGAGCTCTGTGACC
GCCGCGGACACGGCTATGTACTTCTGTGCGAGAGGATACAGCTATGACCCA
TACTTTGACTCCTGGAGCCAGGGCACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 65
NI-302.71F6- VL CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGGCGA
TCACCATCTCCTGCACTGGAACCAGTAGTGATATTGGGAGTTATGATTTTGT
CTCCTGGTACCAGCAGGACCCAGGCAAAGCCCCCAAAGTCATTATTTATGGG
GTCAATAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTG
CGGCCTCCCTGACAATCTCTGGACTCCAGGCTGACGACGAGGCTG
ATTATTACTGCTGCTCATATGCTGGTAGTACCACTTGGGTGTTCGGCGGAGG
GACCAAACTGACCGTCCTA
SEQ ID NO: 67
NI-302.11H6- VH GAGGTGCAGCTGGTGCAGTCTGGAGCTGTGATGAAGAAGCCTGGAGACTCA
GTGAGGGTCTCCTGCAGGGCTTCTACTTACAGCTTTTCCACCTATAGTTTCAC
CTGGGTGCGACAGGTCCCTGGACAAGGCCTTGAGTGGATGGGATGGATCAG
CGCTTATAATGGTCACACAAACTATGTAGACAGCTTCCAGGGCAGACTCACG
TTGACCACAGACACATCCGCGAGTACAGCGTACATGGAACTGAGGAGCCTC
AGATCTGACGACACGGCCATCTATTATTGTGCGGCTGTAGACACCACTTACT
ACTATTACGGCATGGACGTCTGGGGCCAAGGCACCCTGGTCACCGTCTCCTC
SEQ ID NO: 69
NI-302.11H6— VL CAGACTGTGGTGACTCAGGAGCCAACGTTCTCAGTGTCCCCTGGAGGGACA
GTCACACTCACTTGTGCCTTGAGGTTTGGCTCAGTCTCTAGTAGCTACTATCC
CAGCTGGTTCCAGCAGACCCCAGGCCAGGCTCCACGCACGCTCATCTACAGC
ACAAACACCCGCTCTTCGGGGGTCCCTGCTCGATTCTCTGGCTCCATTCTTGG
GAACAAAGCTGCCCTCACCATCGCGGGGGCCCAGGCAAATGATGAGGCTGA
CTATTACTGTGTGCTGTATATGGGTAGTGGAATCGGGGTGTTCGGCGGAGGG
ACCAAGTTGACCGTCCTA
SEQ ID NO: 71
NI-302.3D8- VH GAGGTGCAGCTGGTGCAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCC
CTGAGACTCTCTTGTGAAGCCTCCGGATTCATCTTTAAAACCTATGCCATGA
TCCGCCAGCTTCCCGGGAGGGGGCTGGAATGGGTCTCAGCTATAA
GTGCCACTGGTGGAAGCACCTTCTACGCAGAGTCCGTGAAGGGCCGGCTCA
CCATTTCCAGAGACACTGCCAAGAATACAGTGTATCTGCAAATGAACAACCT
GAGAGCCGAAGACACGGCCATGTATTACTGTGCGAAAGGGTCGACTGCGGT
ATATCTCTTTGACTCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 73
NI-302.3D8— VK GACATCCAGATGACCCAGTCTCCGTCCTCACTGTCTGCATCTGTAGGGGACA
GAGTCACCCTCACTTGTCGGGCGAGTCAGGACATCAGAAATTTCTTGGCCTG
GATTCAGCAGAAGCCAGGGAAACCCCCTAAGTCCCTGATCTATGCTGCGTCC
ACTTTGCAAAGTGGGGTCCCATCACGATTCAGCGGCAGTGGATCCGGGACA
GATTTCACTCTCACCATCAGCAGCCTGCACCCTGAAGATTTTGCTACTTATTA
CTGCCAGCAGTTTTATAATTACCCTCCGACGTTCGGCCAAGGGACCAAGGTG
GAGATCAAA
SEQ ID NO: 75
NI-302.18A1- VH CAGCTGCAGGAGTCGGGCCCAGGACTAGTGAAGCCTTCGGAGGCC
CTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCACTACTGATTATTACTA
TTGGGGCTGGATCCGCCAGTCCCCAGGCAAGGGACTAGAGTGGGTTGGGAC
AATATACTTTGGTGGGGCCACCTACTACAATCCGTCCCTCAGGAACCGGGTC
TCGATATCTGTGGACACGTCCAACACTCGCCTCTCCCTGAGACTTATCTCTCT
GAGCGCCGCTGACACGGCCGTCTATTATTGTGCGAGAGTGGGCTACTTGGAT
AGGAGTGGTCTTCTTGTGGGCCAGGGCACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 77
NI-302.18A1- VK GAAATTGTGCTGACGCAGTCTCCACTCTCCGTGCCCGTCACCCCCGGAGAGC
CGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAATAATGGATA
CAACTATTTGGATTGGTACCTGAAGAAGCCTGGGCAGTCTCCACAACTCCTG
ATCTATTTGGGCTCTACTCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGCCA
GTGGATCAGGCACAGACTTTACACTGGAAATCAGCAGAGTGGAGGCTGAAG
GCGTTTACTACTGCATGCAAGCTCTGCAGACTCCTCCGACTTTCGG
CAGAGGGACCAAGGTGGAGATCAAA
SEQ ID NO: 79
NI-302.52C9- VH GAGGTGCAGCTGGTGCAGTCTGGGGGAGGCTTGGTCCAACCTGGGGGGTCC
CTGAGACTCTCCTGTGCAGGCTCTGGATTCACCGTCAGTGACACCTACATGA
GTTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGGTATTC
ATGCCGGTGGTGAAACATATTACGCAGACTCCGTGAAGGGCCGATTCACCA
TCTCCAGAGACAACTCCAAGAACACGCTGTATCTTCAAATGAATAGGCTGAC
ACCTGAGGACACGGCTGTCTTTTATTGTGCGAGACACTACTACGGTAATGAC
GACGACACTGATTATTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 85
NI—302.52C9- VK GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGC
CGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATA
CAACTATTTGGATTGGTACGTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTC
ATCTATTTGGGTTCTACTCGGGCCTCCGGGGTCCCTGACAGATTCAGTGGCA
GTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGG
ATGTTGGGGTTTATTACTGCTTACAAGCTCAACAAATTCCGTGGACGTTCGG
CCAAGGGACCAAGGTGGAGATCAAA
SEQ ID NO: 87
NI-302.46C9- VH CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTAAAGCCTTCACAGACC
CTGTCCCTCACCTGCACTGTTTCTGGTGCCTCCGTCAGCAGTGGTGCCTACTA
CTGGAGTTGGATCCGGCAGCCCGCCGGGAAGCGACTGGAGTGGATTGGGCG
TGTCTATCCCACTTGGAGCACCAACTACAACCCCTCCCTCGAGAGTCGAGTC
ACCATATCGTTAGACACGTCCAACAACCAGTTCTCCCTGAAGCTGACCTCTT
TGACTGCCGCAGACACGGCCGTTTATTACTGTGCGAGAGAGGCTCCTGGTGA
CTACGATGCTGCGCCCCTAGCCTACTGGGGCCAGGGCACCCTGGTCACCGTC
TCCTCG
SEQ ID NO: 89
NI-302.46C9- VK GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTTGGAGACA
GAGTCACCATCACTTGCCGGGCAAGTCAGTACATTAGCCACTATTTAAATTG
GCAGAAACCAGGGAAAGCCCCTCAGCTCGTAATCTATGCTGCATCC
CAAAGTGAGGTCCCATCAAGGTTCAGTGGGAGTGGATCTGGGCCA
ACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTATT
ACTGTCAACAGAGTTACACTACCCCTCGAACTTTTGGCCAGGGGACCAAGCT
GGAGATCAAA
SEQ ID NO: 91
Table III: Nucleotide sequences of the VH and VL region of antibodies recognizing an
epitope of the P-rich region of HTT, z'.e exon 1 in aggregated form.
Antibody Nucleotide ces of variable heavy (VH) and variable light (VL) chains
NI—302.63F3- VH CAGGTGCAGCTGGTGCAATCTGGGTCTGCGTTCAAGAAGCCTGGGACCTCA
GTTTCCTGCAAGGCCTCTGGATACACCTTCGAGACCCGTTCTATGA
TGCGACAGGCCCCTGGACAAGGGCTTGAATACATGGGATGGATCA
ACACCAACACTGGCAACCGCACGTATGTCCAGGCCTTCAGAGGACGATTTGT
CTTCTCCTTGGACACCTCTGTCAGCACGGCATATCTGCAGATCAGCAACTTA
AAGACTGAGGACACTGCCGTGTATTACTGTGCGAGAGGGGCAGGTGGGGGA
TATTGGTTCGACTCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 5
NI-302.63F3—VK GACATCCAGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGA
GGGCCACCATCAACTGCAAGTCCAATCAGAGTCTTTTCTACAGTTCCAACAA
TAACAACTACTTAGCTTGGTACCAGCACAAATCCGGACAGCCTCCTAAGCTG
CTCGTTTACTGGGGATCTACCCGGGAATCCGGGGTCCCTGACCGCTTCAGTG
GCAGCGGGTCTGGGACTGACTTCACTCTCACCATCAGTAGCCTGCAGGCTGA
GGATGTTGCAATTTATTACTGTCACCAATATTATCATAATCCGTACACTTTTG
GCCAGGGGACCAAGCTGGAGATCAAA SEQ ID NO: 7
NI—302.31F11- VH GAGGTGCAGCTGGTGGAGTCCGGAGGAGGCTTGATCCAGCCGGGGGGGTCC
CTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGCAGCACCTACATGA
GTTGGGTCCGCCAGGCTCCAGGGAAGGGGCTTGAGTGCGTCTCAGTTATTTT
TAGTGGCGCTGACACATATTACGCAGACTCCGTGAAGGGCCGATTCACCGTC
TCCAGAGACAATTCCAAGAACACACTGTTTCTTCAGATGAACAGCCTGAGA
GTCGAGGACACGGCCACATATTACTGTGTGAGACATTATTATGGTTCAGACC
TTCCATCTGACTTCTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 13
NI-302.31F1 l- VK GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCGCCCCTGGAGAGC
CGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTATACAGTAATGGATA
CAACTATTTGGATTGGTACCTGCAGAAGCCAGGGAAGCCTCCACAGCTCCTG
GTCTATTTGGGTTCTGATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCA
GTGGATCAGGCAAAGATTTTACACTGAACATCAGCAGAGTGGAGGCTGAGG
ATGTTGGGGTTTATTACTGCATGCAAGGTCTACAAAGTCCGTGGACGTTCGG
CCAAGGGACCAAGCTGGAGATCAAA SEQ ID NO: 15
.2A2— VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCC
CTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTACCTATTGGATGA
ACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAA
AACCAGATGGAAGTGACAAATACTATGTGGACTCTGTGAAGGGCCGATTCA
CCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCC
TGAGAGACGAGGACACGGCTGTGTATTACTGTGCGAGAGGGGACGGCAGTG
GCTGGAACGTCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 17
NI—302.2A2- VK CAGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGA
GGGCCACCATCAACTGCAAGTCCAGCCAGAGTCTTTTATACACCTCCAAAAA
TAAGGACAGTAAGAACTACTTAGGTTGGTACCAGCAGAAACCAGGACAGCC
TCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGAC
CGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCC
TGCAGGCTGAGGATGTGGCAGTTTATTACTGTCAGCAGTATTATACTACTCC
TCAGTTCGGCGGAGGGACCAAGGTGGAGATCAAA SEQ ID NO: 19
NI-302.15D3- VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGACTTAGTTCAGCCTGGGGGGTCC
CTAAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTACTGGATGC
ACTGGGTCCGCCAAGCTCCAGGGAAGGGTCTGGTGTGGGTCTCACGTATTAG
TGGCAGTAGCAAAACCTACGCGGACTCCGTGAAGGGCCGATTCAC
CATCTCCAGAGACAACGCCAAAAACACGCTGTATCTGCAAATGAACAGTCT
CGAGGACACGGCTGTGTATTACTGTGCAATACTTGGCGGATATTGT
AGTAGTACCAGTTGTCGTCCCTTTGACAACTGGGGCCAGGGAACCCTGGTCA
CCGTCTCCTCG SEQ ID NO: 135
NI—302.15D3- VL CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGA
TCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGTTTATAACTATGT
CTCCTGGTACCAACAACACCCAGGCAAAGCCCCCAAACTCATGATTTTTGAT
GTCAGTAATCGGCCCTCAGGGATTTCTAATCGCTTCTCTGGCTCCAAGTCTG
GCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTG
ATTATTACTGCAGCTCATATACAAGCAGCGACACTTGGGTGTTCGGCGGAGG
GACCAAGCTGACCATCCTA
SEQ ID NO: 137
NI-302.64E5- VH CAGCTGGTGGAGACTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCC
CTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCGACCAGGCCTGGATGA
GCTGGGTCCGCCAGGTTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGGATTA
AAACGAAAACTGAGGGTGAAGCAACAGACTACGCAGCGCCCGTGAGAGGC
AGATTCACCATCTCAAGAGATGATTCAGAAGACACGGTGTTTCTGCAAATGA
ACAGCCTGAAAACCGAGGACACAGCCCTGTATTACTGTACGTCAACGGGAG
TCTTAGCAGCAGCTGTCGATGTCTACTGGGGCCAGGGAACCCTGGTCACCGT
CTCCTCG
SEQ ID NO: 164
NI-302.64E5- VK GACATCCAGTTGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGA
GGGCCACCATGACCTGCAAGTCCAGCCAGAGTCTTTTCTACAGTTACAACAA
TGAGAACTACTTAGCCTGGTATCAGCAGAGACCAGGACAGCCTCCTAAGTT
TTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGT
GGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTG
AAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCAGACGTT
CGGCCAAGGGACCAAAGTGGATATCAAA
SEQ ID NO: 168
Table IV: Nucleotide sequences of the VH and VL region of antibodies recognizing an
epitope of the C-terminal region of HTT, i.e exon 1 in aggregated form.
Antibody Nucleotide sequences of variable heavy (VH) and variable light (VL) chains
NI-302.35C1-VH CAGCTGGTGGAGTCTGGGGGAAACTTGGTACAGCCGGGGGGGTCC
CTCTCCTGTACTGCCTCTGGATTCACCTTTAGTATAACGGCCCTGA
GTTGGGTCCGCCAGGCTCCAGAAAAGGGGCCGCAGTGGGTCTCAGCAATCA
CTGGAAATGCTTATGGGACATACTACGCAGACTCCGTGAAGGGCCGGTTCA
CCATTTCCAGAGACAACGCCAAGAACACACTGTACTTGCAAATGAACGGCC
TGAGAGCCGAGGACACGGCCATCTATTACTGTGTGAAAGGAATTGCCTCCG
ATAGTAGTGGTTATTCTGCCTTCTGGGGCCCGGGCACCCTGGTCACCGTCTC
CTCG
SEQ ID NO: 9
NI-302.35C1-VK GAAATTGTGCTGACTCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAA
GAGCCACCCTCTCCTGCAGGGCCAGTCAAAGTGTTGACAACCAGTTTGCCTG
GTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATTTATGATGCATCC
AGGAGGGCCCCTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACA
GACTTCACTCTCACCATTAGCAGCCTAGAGCCTGAAGATTTCGCAATTTATT
ACTGTCAGCATCGTTACACCTGGCTCTACACTTTTGGCCAGGGGACACGACT
TAAA
SEQ ID NO: 11
NI-302.72F10- VH GAGGTGCAGCTGGTGGAGACTGGGGGAGGCTTCGTACAGCCTGGGGGGTCC
CTGAGACTCTCCTGTGCAGCCTCTGGATTCAACTTCGGCAGTTATGCCATGA
GCTGGGTCCGCCAGGCTCCAGGGAAGGGACTGGAGTGGGTGTCAGATATCA
GTGGTATTGGTAGTAACACATACTACGCAGACTCCGTGAAGGGCCGTTTCAC
CATTTCCAGAGACAATTCCGACAATACGTTGTACCTGGACATGAGCAGCCTG
AGAGCCGAGGACACGGCCAGATATTACTGTGCGAAGGATCGAAAGCGCAGT
TACGAACAGTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 176
NI-302.72F10- VK GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTCGTACAGCCTGGGGGGTCC
CTGAGACTCTCCTGTGCAGCCTCTGGATTCAACTTCGGCAGTTATGCCATGA
GCTGGGTCCGCCAGGCTCCAGGGAAGGGACTGGAGTGGGTGTCAGATATCA
GTGGTATTGGTAGTAACACATACTACGCAGACTCCGTGAAGGGCCGTTTCAC
CATTTCCAGAGACAATTCCGACAATACGTTGTACCTGGACATGAGCAGCCTG
AGAGCCGAGGACACGGCCAGATATTACTGTGCGAAGGATCGAAAGCGCAGT
GGCTGGTACGAACAGTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 178
Table V: Nucleotide sequences of the VH and VL region of antibodies recognizing HTT
species and/or fragments thereof.
Antibody Nucleotide sequences ofvariable heavy (VH) and variable light (VL) chains
NI—302.6N9- VH CAGCTGGTGGAGTCTGGGGGAGACTTGGTGCAGCCTGGGGGGTCC
CTGAGACTCTCCTGTGTAGTCTCTGGATTCACCTTTAGTAGTTATGCCATGAC
CTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGCCTGGGTCTCAACAATTAG
TGCTACTGGTGGTAGTACATTCTACACAGACTCCGTGAGGGGCCGGTTCACC
ATCTCCCGAGACAATTCCAAGAACACACTGTATCTGCAAATGAATAGCCTGA
GAACCGACGACACGGCCATATATTATTGTGTGAAAGATCTATTTGGAGTGGA
CACCTCCTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTC
TCCTCG
SEQ ID NO: 21
NI—302.6N9— VK GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAA
GAGCCACCCTCTCCTGCAGGCCCAGTCAGAGTGTCAGCGGCAGGTATGTGG
CCTGGTATCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCTTCTATGCTGC
ATCCAACAGGGCCATTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGG
GACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTG
TATTACTGTCAGCACTATGGTGCCTCATCGTACACTTTTGGCCCGGGGACCA
AAGTGGATATCAAA
SEQ ID NO: 23
NI-302.8F1— VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTGAAGCCGGGGGGGTCC
CTTACAATCTCCTGTGCAGCCTCTGGTTTCACCTTCAGTAATGCCTGGATGAA
CTGGGTCCGCCAGGCTCCAGGTAAGGGGCTGGAGTGGGTCGGCCATATTAG
AACGCAAGCTGAAGGAGGGACATCAGACTATGCTGCACCCGTGAAAGGCAG
ATTCACCATCTCAAGAGATGACTCAAAAAACACGCTGTATCTGCAAATGAA
GAAAACCGAGGACACAGCCGTATATTATTGTATCCCCCCCCCCTAC
TACTACTATTACGGTCTGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCT
CCTCG
SEQ ID NO: 81
NI-302.8F1— VL CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGA
TCTCCTGCACTGGAGCCAGCAGTGATGTTGGGACTTATGACCTTGT
CTCCTGGTACCAACAACATCCAGGCAAAGCCCCCAAACTCATTATTTATGAG
AAGCGGCCCTCAGGGGTTTCTTATCGCTTCTCTGCCTCCAAGTCTGC
CAACACGGCCTCCCTGACAATATCTGGGCTCCAGGCTGAGGACGAGGCTGA
ATATTACTGCTGCTCATATGCAGGTTATAGCACGGTATTCGGCGGAGGGACC
AAGCTGACCGTCCTA
SEQ ID NO: 83
NI—302.4A6— VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCC
CTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCGCTTATGCCATGA
GCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAACTATTA
GTGGTAGTGGTGGTAGTACATACTACGCAGACTCCGTGAAGGGCCGGTTCTC
CATCTCCAGAGACAACTCCAAAAACACCCTGTATCTGCAAATGAACAGCCT
GAGAGCCGAGGACACGGCCGTATATTTCTGTGCGAAAGTTACCACGGAACT
CTACGGTGCTAACTCCTACTACTACTACATGGACGTCTGGGGCAAAGGGACC
ACGGTCACCGTCTCCTCG
SEQ ID NO: 184
NI-302.4A6— VK GTGTTGACACAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAA
GAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTGTCAGCAGGTATTTAGC
CTGGTACCAGCAAAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCA
TCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGG
TTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAATGT
ATTACTGTCAGCTGTATGGTAACTCACAGACGTTCGGCCAGGGGACCAAGGT
GGAGATCAAA
SEQ ID NO: 186
NI-302.12H2- VH GAGGTGCAGCTGGTGCAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCC
CTGAGACTTTCCTGTGAAGCCTCTGGATTCACCTTTAGCAACTATGCCATGG
GCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTAATTA
GTGGTACTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCA
CCATCTCCAGAGACAATTCCATGAACACGCTGTATCTGCAAATGAACAGCCC
GAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATCTGAGGAAGAT
TAGCGGTCCTTTATACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACG
GTCACCGTCTCCTCG
SEQ ID NO: 188
NI-302.12H2- VK CAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCC
CTGAGACTTTCCTGTGAAGCCTCTGGATTCACCTTTAGCAACTATGCCATGG
GCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTAATTA
GTGGTACTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCA
CCATCTCCAGAGACAATTCCATGAACACGCTGTATCTGCAAATGAACAGCCC
GAGAGCCGACGACACGGCCGTATATTACTGTGCGAAAGATCTGAGGAAGAT
TAGCGGTCCTTTATACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACG
GTCACCGTCTCCTCG
SEQ ID NO: 192
NI-302.8M1— VH GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCA
GTGAAAGTTTCCTGCAAGGCATCCGGATACACCTTCACCATCTACTATATGC
ACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGAATCA
GCCCGAGTGGTGCCCACACAATGTACGCACAGAATTTCCAGGGCAGAGTCA
CCGTGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCC
TGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGGAGCACGGTGA
CTAACTATCGACCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTC
CTCG
SEQ ID NO: 194
NI-302.8M1- VK GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACA
GAGTCACTATCACTTGCCGGGCGAGTCAGGACATTAGCAATTATTTAGCCTG
GTATCAGCAGAAACCAGGGAAAGTTCCTAAACTCCTGATCTTTGCTGCATCC
ACTTTGCAATCAGGGGTCCCGTCTCGGTTCGGTGGCAGTGGATCTGGGACAG
ATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATGTTGCAACTTATTA
CTGTCAAAACTATAACAGTGGCCCTCCGCCTTTCGGCCCTGGGACCAAAGTG
GATATCAAA
SEQ ID NO: 198
Table VI: Nucleotide sequences ofthe VH and VL region of antibodies an e of the N-
terminal-region of HTT, z'.e exon 1 in aggregated form
Antibody Nucleotide sequences ofvariable heavy (VH) and le light WL) chains
NI-302.15E8- VH GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGATACAGCCGGGGGGGTCC
CTGAGACTCTCCTGTGCAGTCTCTGGATTCACCGTCAGTAGTTATAGCATGA
TCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATACACTA
GTAGTAGCAGAAGTAATACCAAAAAGTACGCAGACTCTGTGAAGGGCCGAT
TCACCATCTCTAGAGACAATGCCAGGAACTCACTCTATCTGCAAATGAACAG
CCTGAGAGACGAGGACACGGCTGTGTATTACTGTGCGAGAGCAGGGGACTT
CGGGGAGTTACTCACTGGTGAGGGGTATTACGGTATGGACGTCTGGGGCCA
AGGGACCACGGTCACCGTCTCCTCG
SEQ ID NO: 131
NI-302.15E8- VL TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAG
CCACCATCACCTGCTCGGGAGATGAATTGGGGGATAAATATGTTGGTTGGTA
GAAGCCAGGCCAGTCCCCTCTGCTGGTCATCTATCAAGATGCGAAG
CGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAG
CCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTACTACTG
TCAGGCGTGGGACAGCGGCACGATGGTTTTCGGCGGAGGGACCAGGCTGAC
CGTCCTA
SEQ ID NO: 133
Table VII: Nucleotide sequences of the VH and VL region of antibodies recognizing an
epitope of the Q/P-rich region of HTT, z'.e exon 1 in aggregated form.
Antibody Nucleotide sequences able heavy (VH) and variable light (VL) chains
NI—302.7D8- VH CAGGTGCAGCTGGTGCAATCTGGATCTGAGTTGAAGAAGCCTGGGGCCTCA
GTGAAGGTTTCCTGCAAGGCTTCTGGATACAACTTCAATAACTATGCCATCA
ATTGGTTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCA
ACACCATCACTGGGCACCCAACGTATGCCCAGGGCTTCAAAGGACGATTTGT
CTTCTCCTTGGACACCTCTGTCAGCACGGCATATCTGCAGATCAGCAGCCTA
AAGCCTGAGGACACTGCCGTCTATTACTGTGCGAGAACTTACAGTAACTACG
GCGAATTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 172
NI-302.7D8— VL CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCGTGGACAGTCGA
TCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGAAGTTATAACCTTGT
CTCCTGGTACCAACAGTACCCAGGCAAGGCCCCCAAGCTCATAATTCATGAG
GGCAGTGAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTG
GCAACACGGCCTCCCTGACAATTTCTGGGCTCCAGGCTGAGGACGAGGCTG
ATTATTACTGCTGCTCATATGCAGGTACTACTACTTTCGTGCTATTCGGCGGA
GGGACCAAGCTGACCGTCCTC
SEQ ID NO: 174
Due to the cloning strategy the amino acid sequence at the N- and inus of the heavy
chain and light chains may potentially contain primer-induced tions in FRl and FR4,
which however do not substantially affect the ical activity of the antibody. In order to
e a consensus human antibody, the tide and amino acid ces of the original
clone can be aligned with and tuned in accordance with the pertinent human germ line variable
region sequences in the database; see, e.g., Vbase2, as described above. The amino acid
sequence of human antibodies are indicated in bold when N- and C-terminus amino acids are
considered to potentially deviate from the consensus germ line sequence due to the PCR primer
and thus have been replaced by primer-induced mutation correction (PIMC), see Table VI.
Accordingly, in one embodiment of the present invention, the polynucleotide comprises,
consists essentially of, or consists of a nucleic acid having a polynucleotide sequence of the VH
and the VL region of an anti-HTT antibody and/or fragments thereof as depicted in Table VI.
Table VIII: Nucleotide sequences of the VH and VL region of antibodies recognizing HTT
species and/or nts thereof showing ement by PIMC (bold).
Alternative tide sequences ofvariable heavy WH) and variable light WL) chains
Antibody-regions
with PIMC
Nl-302.33Cl l-PIMC CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTTGTCCAGCCTGGGAACTC
VH CCTGAGACTCTCCTGTGCAGCGTCTGGATTCAGGTTCAGTGACTTTGGCATG
GTCCGCCAGGCTCCAGGCAAGGGACTGGAGTGGCTGGCACTTATA
TGGTATGATGGAGGGTATAAGTACTATGCAGACTCCGTGAAGGGCCGATTC
ACCATCTCCAGAGACAATTCCAAGAATACGATGTTTCTACAAATGAACAGCC
TGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGACCCACCTAGAATATTG
CAGTAGAACCACCTGCTATCTCGGCCACTGGGGCCAGGGAACCCTGGTCAC
CGTCTCCTCG
SEQ ID NO: 97
NI-302.33C11-PIMC GACATCCAGTTGACCCAGTCTCCGTCCTTCCTATCTGCGTCTGTGGGAGAC
VK ACCTTCACTTGCCGGGCCAGTCAGGGCATTAGCGATTATTTAGCCT
GGTTTCAGCAGAAACCAGGGATTGCCCCTAAGCTCCTGATCTATGCTGCGTC
CACTTTGCAAACCGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGAC
AGAATTCACTCTCACAATCCGCAGCCTGCAGTCTGAAGATTTTGGAACTTAT
TACTGTCAGCAGCTTAAAACTTACCCGTACACTTTTGGCCAGGGGACCAAG
CTGGAGATCAAA
SEQ ID NO: 99
NI-302.63F3-PIMC GATATTGTGATGACTCAATCACCAGACTCCCTGGCTGTGTCTCTGGGCGAG
VK AGGGCCACCATCAACTGCAAGTCCAATCAGAGTCTTTTCTACAGTTCCAACA
ATAACAACTACTTAGCTTGGTACCAGCACAAATCCGGACAGCCTCCTAAGCT
GCTCGTTTACTGGGGATCTACCCGGGAATCCGGGGTCCCTGACCGCTTCAGT
GGCAGCGGGTCTGGGACTGACTTCACTCTCACCATCAGTAGCCTGCAGGCTG
AGGATGTTGCAATTTATTACTGTCACCAATATTATCATAATCCGTACACTTTT
GGCCAGGGGACCAAGCTGGAGATCAAA
SEQ ID NO: 101
.63F3-PIMC- GATATTGTGATGACTCAATCACCAGACTCCCTGGCTGTGTCTCTGGGCGAG
NS VK AGGGCCACCATCAACTGCAAGTCCTCACAGAGTCTTTTCTACAGTTCCAACA
ATAACAACTACTTAGCTTGGTACCAGCACAAATCCGGACAGCCTCCTAAGCT
GCTCGTTTACTGGGGATCTACCCGGGAATCCGGGGTCCCTGACCGCTTCAGT
GGCAGCGGGTCTGGGACTGACTTCACTCTCACCATCAGTAGCCTGCAGGCTG
AGGATGTTGCAATTTATTACTGTCACCAATATTATCATAATCCGTACACTTTT
GGGACCAAGCTGGAGATCAAA
SEQ ID NO: 103
NI-302.63F3-PIMC- GATATTGTGATGACTCAATCACCAGACTCCCTGGCTGTGTCTCTGGGCGAG
SG VK AGGGCCACCATCAACTGCAAGTCCAATCAGGGCCTTTTCTACAGTTCCAACA
ATAACAACTACTTAGCTTGGTACCAGCACAAATCCGGACAGCCTCCTAAGCT
GCTCGTTTACTGGGGATCTACCCGGGAATCCGGGGTCCCTGACCGCTTCAGT
GGCAGCGGGTCTGGGACTGACTTCACTCTCACCATCAGTAGCCTGCAGGCTG
TTGCAATTTATTACTGTCACCAATATTATCATAATCCGTACACTTTT
GGCCAGGGGACCAAGCTGGAGATCAAA
SEQ ID NO: 105
NI—302.63F3-PIMC— GATATTGTGATGACTCAATCACCAGACTCCCTGGCTGTGTCTCTGGGCGAG
NQ VK AGGGCCACCATCAACTGCAAGTCCCAACAGAGTCTTTTCTACAGTTCCAACA
ACTACTTAGCTTGGTACCAGCACAAATCCGGACAGCCTCCTAAGCT
GCTCGTTTACTGGGGATCTACCCGGGAATCCGGGGTCCCTGACCGCTTCAGT
GGCAGCGGGTCTGGGACTGACTTCACTCTCACCATCAGTAGCCTGCAGGCTG
AGGATGTTGCAATTTATTACTGTCACCAATATTATCATAATCCGTACACTTTT
GGCCAGGGGACCAAGCTGGAGATCAAA
SEQ ID NO: 107
NI-302.35C1-PIMC GAAATTGTGCTGACTCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAA
VK AGAGCCACCCTCTCCTGCAGGGCCAGTCAAAGTGTTGACAACCAGTTTGCCT
AACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATTTATGATGCATC
CAGGAGGGCCCCTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGAC
AGACTTCACTCTCACCATTAGCAGCCTAGAGCCTGAAGATTTCGCAATTTAT
TACTGTCAGCATCGTTACACCTGGCTCTACACTTTTGGCCAGGGGACCAAG
CTGGAGATCAAA
SEQ ID NO: 109
NI—302.3 1F] 1-PIMC GATATTGTGATGACTCAATCACCACTCTCCCTGCCCGTCGCCCCTGGAGAG
VK CCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTATACAGTAATGGAT
ACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGAAGCCTCCACAGCTCCT
GGTCTATTTGGGTTCTGATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGC
AGTGGATCAGGCAAAGATTTTACACTGAACATCAGCAGAGTGGAGGCTGAG
GATGTTGGGGTTTATTACTGCATGCAAGGTCTACAAAGTCCGTGGACGTTCG
GCCAAGGGACCAAGGTGGAAATCAAA
SEQ ID NO: 111
NI-302.2A2—PIMC GATATTGTGATGACTCAATCACCAGACTCCCTGGCTGTGTCTCTGGGCGAG
VK AGGGCCACCATCAACTGCAAGTCCAGCCAGAGTCTTTTATACACCTCCAAAA
ATAAGGACAGTAAGAACTACTTAGGTTGGTACCAGCAGAAACCAGGACAGC
CTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGA
CCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGC
CTGCAGGCTGAGGATGTGGCAGTTTATTACTGTCAGCAGTATTATACTACTC
CTCAGTTCGGCGGAGGGACCAAGGTGGAAATCAAA
SEQ ID NO: 1 13
.74C11—PIMC CAGGTGCAGCTGGTGCAATCTGGGACTGAGGTGCAGAAGCCTGGGGCCTC
VH AGTAAAAGTCTCCTGCAAGGCTTCTGGATACAGTTTCACCGGCTACTTTTTG
CACTGGGTACGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGGTGGATC
AACCCTAACAGTGGTGACACAAACTATGCAGAGAAGTTTCGGGGCAGAATC
ATCATGACCAGGGACACGTCTGTCAGCACAGCCCACATGGAGTTGAGCAGC
CTGAGATTTGACGACACGGCCCTATATTACTGTACGAGAGAGGCCCCTGACC
CTGAGACGGACGTCTGGGGCCAAGGAACCACGGTCACCGTCTCC
SEQ ID NO: 1 15
NI-302.74C11-PIMC TCCTATGAGCTGACTCAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGAC
VL GGCCAGGATCACCTGCTCTGGAGATGCAGTGCCAAAGCAGTATATTTATTGG
CAGAAGCCAGGCCAGGCCCCTATTCTGGTGATATATAAAGACACT
CAGAGGCCTTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCAGGGACAA
CGTTGACCATAACTGGCGTCCAGGCAGACGACGAGGGTGACTATT
ACTGTCAATCAGCAGACAGTAGTGCTACTTGGGTGTTCGGCGGAGGGACCA
AATTGACCGTCCTA
SEQ ID NO: 117
NI—302.39G12-PIMC GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCACCCTTGGGGGTC
VH CCTGAGACTCTCCTGTGCAGCCTCTGGATTCAGCGTCTCTAATTACGCCATA
ACTTGGGTCCGCCGGGCTCCAGGGAAGGGGCTGCAATATATTTCAGTAATTT
ATGGCAGGACATACTACGGAGACTCCGTGAGGGGCCGCTTCACCA
TCTCTAGGGACGATTCCAAGAACACTCTCTATCTTCAAATGAACAGCCTGAG
ATTTGAGGACACGGCTGTGTATTACTGTGCGAGAGCGCACGGCCAATATTAC
TATGGTGTGGACGTCTGGGGCCAAGGAACCACGGTCACCGTCTCCTCG
SEQ ID NO: 119
NI-302.39G12-PIMC GACATCGTGATGACCCAGTCTCCACTCTCCCTGTCCGTCAGCCCTGGAGAG
VK CCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTACATAGTAATGGAT
ACAACTATTTGGATTGGTACCGGCAGAAACCAGGGCAGTCTCCACAGCTCCT
GATCTATTTGAGTTCTAATCGGCCCTCCGGGGTCCCTGATAGGTTCAGTGCC
AGTGGATCAGGCACAGAGTTCACACTGCAAATCAGCAGAGTGGAGGCTGAG
GATGTTGGGGTTTATTACTGCATGCAATCTCTGCAAACGTTCACTTTCGGCG
GAGGGACCAAGGTGGAAATCAAA
SEQ ID NO: 121
NI-302.11A4-PIMC GAAATTGTGCTGACTCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGAGAA
VK AGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTCG
CCTGGTACCAACAAAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTAC
GTCCCGCAGGGCCACTGCCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGG
GACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTG
TATTACTGTCAACAGTATGGTAGCTCGTGGACGTTCGGCCCAGGGACCAAG
GTGGAAATCAAA
SEQ ID NO: 123
NI-302.22H9—PIMC GATATTGTGATGACTCAATCACCACTCTCCCTGTCCGTCAGCCCTGGAGAG
VK CCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTACATAGTAATGGAT
ACAACTATTTGGATTGGTACCGGCAGAAACCAGGGCAGTCTCCACAACTCCT
GATCTATTTGAATTCTAATCGGGCCTCCGGGGTCCCTGATAGGTTCAGTGGC
AGTGGATCAGGCACAGAGTTCACACTGACAATCAGCAGAGTGGAGGCTGAG
GATGTTGGGGTTTATTACTGCATGCAATCTCTGCAAACGTTCACTTTCGGCG
GAGGGACCAAGGTGGAAATCAAA
SEQ ID NO: 125
NI-302.44D7-PIMC GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGT
VH CCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCAT
GAGTTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGGTAT
TGGTTATAGTGATACTAGCACATATTACGCAGACTCCGTGAAGGGCCGCTTC
ACCGTCTCCAGAGACATTTCCAAGAACACGCTGTATCTGCAAATGAATAGCC
TGAGGGCCGAGGACACGGCCGTATATTACTGCGCGAAAGGTACCAGGGACT
ATTACGGTATGGACGTCTGGGGCCAAGGAACCACGGTCACCGTCTCCTCG
SEQ ID NO: 127
NI-302.78H12-PIMC CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGA
VH CCCTGTCCCTCACCTGTCTTGTCTCTAGTTACTCCATCAGCAATGGTTACTAC
TGGGGCTGGATTCGGCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGT
ATCTATCATAATGGGAACACCTATTACAACCCGTCCCTCAAGAGTCGAGTCA
TCATTTCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGTTGAGGTCTGT
CGCAGACACGGCCGTGTACTACTGTGCGATGCCAAGTGCCACCTAT
TATTATGGTTCGGGGACTCAATTCCATGCGTTTGATGTCTGGGGCCAAGGGA
CAATGGTCACCGTCTCTTCG
SEQ ID NO: 129
NI-302.64E5—PIMC GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGT
CCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCGACCAGGCCTGGAT
VH GAGCTGGGTCCGCCAGGTTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGGAT
TAAAACGAAAACTGAGGGTGAAGCAACAGACTACGCAGCGCCCGTGAGAG
GCAGATTCACCATCTCAAGAGATGATTCAGAAGACACGGTGTTTCTGCAAAT
GAACAGCCTGAAAACCGAGGACACAGCCCTGTATTACTGTACGTCAACGGG
AGTCTTAGCAGCAGCTGTCGATGTCTACTGGGGCCAGGGCACCCTGGTCAC
CGTCTCCTCG
SEQ ID NO: 166
.64E5-PIMC GATATTGTGATGACTCAATCACCAGACTCCCTGGCTGTGTCTCTGGGCGAG
AGGGCCACCATGACCTGCAAGTCCAGCCAGAGTCTTTTCTACAGTTACAACA
VK ATGAGAACTACTTAGCCTGGTATCAGCAGAGACCAGGACAGCCTCCTAAGT
TGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAG
TGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCT
GAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCAGACGT
TCGGCCAAGGGACCAAGGTGGAAATCAAA
SEQ ID NO: 170
NI—302.72F10-PIMC GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTCGTACAGCCTGGGGGGT
CCCTGAGACTCTCCTGTGCAGCCTCTGGATTCAACTTCGGCAGTTATGCCAT
VH GAGCTGGGTCCGCCAGGCTCCAGGGAAGGGACTGGAGTGGGTGTCAGATAT
CAGTGGTATTGGTAGTAACACATACTACGCAGACTCCGTGAAGGGCCGTTTC
ACCATTTCCAGAGACAATTCCGACAATACGTTGTACCTGGACATGAGCAGCC
CCGAGGACACGGCCAGATATTACTGTGCGAAGGATCGAAAGCGCA
GGTACGAACAGTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCG
SEQ ID NO: 178
NI-302.72F10-PIMC GAAATTGTGCTGACTCAGTCTCCAGCCACCCTGACTTTGTCTCCAGGGGAA
AGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTATTAGCGCCTACTTAGGCT
VK GGTATCAACAAAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATC
CATTAGGGCCACTGGCATTCCAGACAGGTTTAGTGGCAGTGGGTCTGGGAC
AGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTCTGCAGTTTAT
TACTGTCACCAGCGTAGCAAGTGGCCTCTTACTTTCGGCGGAGGGACCAAG
GTGGAAATCAAA
SEQ ID NO: 182
NI—302.12H2-PIMC GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGT
CCCTGAGACTTTCCTGTGAAGCCTCTGGATTCACCTTTAGCAACTATGCCAT
VH GGGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTAAT
TAGTGGTACTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTC
ACCATCTCCAGAGACAATTCCATGAACACGCTGTATCTGCAAATGAACAGCC
CGAGAGCCGACGACACGGCCGTATATTACTGTGCGAAAGATCTGAGGAAGA
TTAGCGGTCCTTTATACTACTACGGTATGGACGTCTGGGGCCAAGGGACCA
CGGTCACCGTCTCCTCG
SEQ ID NO: 190
NI—302.8M1-PIMC CAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTC
AGTGAAAGTTTCCTGCAAGGCATCCGGATACACCTTCACCATCTACTATATG
VH CACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGAATC
AGCCCGAGTGGTGCCCACACAATGTACGCACAGAATTTCCAGGGCAGAGTC
ACCGTGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGC
CTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGGAGCACGGTG
ACTAACTATCGACCCTTTGACTACTGGGGCCAGGGCACCCTGGTCACCGTC
TCCTCG
SEQ ID NO: 196
The t invention also includes fragments of the polynucleotides of the invention, as
described elsewhere. Additionally polynucleotides which encode fusion polynucleotides, Fab
fragments, and other derivatives, as described herein, are also contemplated by the invention.
The polynucleotides may be produced or manufactured by any method known in the art. For
example, if the nucleotide sequence of the antibody is known, a polynucleotide encoding the
antibody may be assembled from chemically synthesized oligonucleotides, e.g., as described in
Kutmeier et al., hniques 17 (1994), 242, which, briefly, involves the synthesis of
overlapping oligonucleotides containing portions of the sequence encoding the antibody,
ing and ligating of those oligonucleotides, and then cation of the ligated
oligonucleotides by PCR.
Alternatively, a polynucleotide encoding an dy, or antigen-binding fragment, t, or
derivative thereof may be generated from nucleic acid from a suitable source. If a clone
containing a nucleic acid encoding a particular antibody is not available, but the sequence of
the antibody molecule is known, a nucleic acid encoding the antibody may be chemically
synthesized or obtained from a suitable source (e.g, an antibody cDNA library, or a cDNA
library generated from, or nucleic acid, preferably polyA+ RNA, isolated from, any tissue or
cells expressing the HTT-specific antibody, such as oma cells selected to express an
antibody) by PCR amplification using synthetic primers hybridizable to the 3' and 5' ends of
the sequence or by cloning using an ucleotide probe specific for the particular gene
sequence to identify, e. g., a cDNA clone from a cDNA library that encodes the antibody.
Amplified nucleic acids generated by PCR may then be cloned into replicable cloning vectors
using any method well known in the art.
Once the nucleotide sequence and ponding amino acid sequence of the dy, or
antigen-binding fragment, variant, or derivative f is determined, its nucleotide sequence
may be lated using methods well known in the art for the manipulation of nucleotide
sequences, e.g., recombinant DNA techniques, site directed mutagenesis, PCR, etc. (see, for
example, the techniques described in Sambrook et al., Molecular Cloning, A Laboratory
Manual, 2d Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY. (1990) and Ausubel
et al., eds, Current Protocols in Molecular Biology, John Wiley & Sons, NY (1998), which are
both orated by reference herein in their entireties), to generate antibodies having a
different amino acid ce, for example to create amino acid substitutions, ons, and/or
insertions.
IV. sion of Antibody Polypeptides
Following manipulation of the isolated genetic al to provide antibodies, or antigen-
binding nts, variants, or derivatives thereof of the invention, the polynucleotides
encoding the antibodies are typically ed in an sion vector for introduction into host
cells that may be used to produce the desired quantity of antibody. Recombinant expression of
an antibody, or fragment, derivative, or analog thereof, e. g., a heavy or light chain of an
antibody which binds to a target molecule is described herein. Once a polynucleotide encoding
an antibody molecule or a heavy or light chain of an antibody, or portion thereof (preferably
containing the heavy or light chain variable ), of the invention has been obtained, the
vector for the production of the antibody molecule may be produced by recombinant DNA
technology using techniques well known in the art. Thus, methods for preparing a protein by
expressing a polynucleotide containing an antibody encoding nucleotide sequence are described
herein. Methods which are well known to those skilled in the art can be used to construct
expression vectors containing antibody coding sequences and appropriate transcriptional and
ational control signals. These methods include, for example, in vitro recombinant DNA
techniques, synthetic techniques, and in viva genetic recombination. The invention, thus,
provides replicable vectors comprising a nucleotide sequence encoding an antibody molecule
of the invention, or a heavy or light chain thereof, or a heavy or light chain variable domain,
operable linked to a promoter. Such vectors may include the nucleotide sequence encoding the
constant region of the dy molecule (see, e.g., ational applications WO 86/05 807
and WO 89/01036; and US patent no. 5,122,464) and the le domain of the antibody may
be cloned into such a vector for expression of the entire heavy or light chain.
The term "vector" or "expression vector" is used herein to mean s used in accordance
with the present invention as a vehicle for introducing into and expressing a desired gene in a
host cell. As known to those skilled in the art, such vectors may easily be selected from the
group consisting of ds, phages, viruses, and retroviruses. In general, vectors compatible
with the t invention will comprise a selection marker, appropriate restriction sites to
facilitate cloning of the desired gene and the ability to enter and/0r replicate in otic or
yotic cells. For the purposes of this invention, numerous expression vector systems may
be employed. For example, one class ofvector es DNA elements which are d from
animal viruses such as bovine papilloma virus, polyoma virus, adenovirus, vaccinia virus,
baculovirus, retroviruses (RSV, MMTV or MOMLV), or SV40 virus. Others involve the use
of polycistronic systems with internal ribosome binding sites. Additionally, cells which have
integrated the DNA into their chromosomes may be ed by introducing one or more
markers which allow selection of transfected host cells. The marker may e for
prototrophy to an auxotrophic host, biocide resistance (e.g, antibiotics), or resistance to heavy
metals such as copper. The selectable marker gene can either be directly linked to the DNA
sequences to be expressed, or introduced into the same cell by co-transformation. Additional
elements may also be needed for optimal synthesis of mRNA. These elements may include
signal ces, splice signals, as well as transcriptional promoters, enhancers, and
termination signals.
In particularly preferred embodiments the cloned variable region genes are inserted into an
expression vector along with the heavy and light chain constant region genes (preferably
human) as discussed above. In one embodiment, this is accomplished using a etary
expression vector of Biogen IDEC, Inc., referred to as NEOSPLA, and disclosed in US patent
no. 6,159,730. This vector contains the cytomegalovirus promoter/enhancer, the mouse beta
globin major promoter, the SV40 origin of replication, the bovine growth hormone
polyadenylation sequence, neomycin phosphotransferase exon 1 and exon 2, the dihydrofolate
reductase gene, and leader sequence. This vector has been found to result in very high level
expression of antibodies upon incorporation of variable and constant region genes, transfection
in CHO cells, followed by selection in G418 containing medium and methotrexate
amplification. Of , any expression vector which is capable of eliciting expression in
eukaryotic cells may be used in the present ion. Examples of suitable vectors include, but
are not limited to plasmids pcDNA3, pHCMV/Zeo, pCR3.l, pEFl/His, pIND/GS,
pRc/HCMV2, pSV40/Zeo2, pTRACER—HCMV, pUB6/V5-His, pVAXl, and pZeoSV2
(available from Invitrogen, San Diego, CA), and plasmid pCI (available from Promega,
Madison, WI). In general, screening large numbers sformed cells for those which express
suitably high levels if immunoglobulin heavy and light chains is routine mentation which
can be carried out, for example, by robotic systems. Vector systems are also taught in US patent
nos. 5,736,137 and 5,658,570, each of which is incorporated by nce in its entirety herein.
This system provides for high sion , e.g, > 30 l/day. Other exemplary vector
systems are disclosed e.g., in US patent no. 777.
In other preferred embodiments the antibodies, or antigen-binding fragments, ts, or
derivatives f of the invention may be expressed using polycistronic constructs such as
those disclosed in US patent application publication no. 2003-0157641 A1 and incorporated
herein in its entirety. In these expression systems, multiple gene ts of interest such as
heavy and light chains of antibodies may be produced from a single polycistronic uct.
These systems advantageously use an internal ribosome entry site (IRES) to provide relatively
high levels of antibodies. Compatible IRES sequences are disclosed in US patent no. 6,193,980
which is also incorporated herein. Those skilled in the art will appreciate that such expression
systems may be used to effectively produce the fill range of antibodies disclosed in the instant
application. Therefore, in one ment the present invention provides a vector comprising
the polynucleotide encoding at least the g domain or variable region of an
immunoglobulin chain of the dy, optionally in combination with a polynucleotide that
encodes the le region of the other immunoglobulin chain of said binding molecule.
More generally, once the vector or DNA sequence encoding a monomeric t of the
antibody has been ed, the expression vector may be introduced into an appropriate host
cell. Introduction of the plasmid into the host cell can be accomplished by various techniques
well known to those of skill in the art. These e, but are not limited to, transfection
including lipotransfection using, e.g., Fugene® or lipofectamine, protoplast fiJsion, calcium
phosphate precipitation, cell fusion with enveloped DNA, microinjection, and infection with
intact virus. Typically, plasmid introduction into the host is via standard calcium phosphate co-
precipitation . The host cells harboring the expression construct are grown under
conditions appropriate to the production of the light chains and heavy chains, and assayed for
heavy and/or light chain protein sis. Exemplary assay techniques include enzyme-linked
immunosorbent assay (ELISA), radioimmunoassay (RIA), or cence—activated cell sorter
analysis (FAC S), immunohistochemistry and the like.
The expression vector is transferred to a host cell by conventional techniques and the transfected
cells are then cultured by conventional techniques to produce an antibody for use in the methods
bed herein. Thus, the invention includes host cells comprising a polynucleotide encoding
an antibody of the invention, or a heavy or light chain thereof, or at least the binding domain or
variable region of an immunoglobulin thereof, which preferably are operable linked to a
logous promoter. In addition or atively the invention also includes host cells
comprising a vector, as defined hereinabove, comprising a cleotide encoding at least the
binding domain or variable region of an immunoglobulin chain of the antibody, optionally in
combination with a polynucleotide that encodes the variable region of the other
immunoglobulin chain of said binding molecule. In preferred embodiments for the expression
of double-chained antibodies, a single vector or vectors encoding both the heavy and light
chains may be co-expressed in the host cell for expression of the entire immunoglobulin
molecule, as detailed below.
The host cell may be co-transfected with two expression vectors ofthe invention, the first vector
encoding a heavy chain derived polypeptide and the second vector ng a light chain
derived polypeptide. The two vectors may contain identical able markers which enable
equal expression of heavy and light chain polypeptides. Alternatively, a single vector may be
used which encodes both heavy and light chain polypeptides. In such situations, the light chain
is advantageously placed before the heavy chain to avoid an excess of toxic free heavy chain;
see oot, Nature 322 (1986), 52; Kohler, Proc. Natl. Acad. Sci. USA 77 (1980), 2197. The
coding sequences for the heavy and light chains may comprise cDNA or genomic DNA.
As used , "host cells" refers to cells which harbor vectors constructed using inant
DNA techniques and encoding at least one logous gene. In descriptions ofprocesses for
isolation of antibodies from recombinant hosts, the terms "cell" and "cell culture" are used
interchangeably to denote the source ofantibody unless it is clearly specified otherwise. In other
words, recovery ofpolypeptide from the "cells" may mean either from spun down whole cells,
or from the cell culture containing both the medium and the suspended cells.
A variety of host-expression vector systems may be utilized to express antibody molecules for
use in the s bed herein. Such host-expression systems represent vehicles by which
the coding sequences of interest may be produced and subsequently purified, but also represent
cells which may, when transformed or transfected with the appropriate nucleotide coding
ces, express an antibody molecule of the invention in situ. These e but are not
limited to microorganisms such as bacteria (e.g., Escherichia coli, Bacillus subtilis)
transformed with recombinant bacteriophage DNA, plasmid DNA or cosmid DNA expression
vectors containing antibody coding sequences; yeast (e.g., Saccharomyces, Pichia) transformed
with recombinant yeast expression vectors ning antibody coding sequences; insect cell
systems infected with recombinant virus expression vectors (e.g., baculovirus) containing
antibody coding sequences; plant cell systems infected with recombinant virus expression
vectors (e.g, cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed
with inant plasmid expression vectors (e.g., Ti plasmid) containing antibody coding
sequences; or ian cell systems (e.g, COS, CHO, NSO, BLK, 293, 3T3 cells) harboring
recombinant sion constructs containing promoters derived from the genome of
mammalian cells (e.g., metallothionein promoter) or from mammalian viruses (e.g., the
adenovirus late er; the vaccinia virus 7.5K promoter). Preferably, bacterial cells such as
E. coli, and more ably, eukaryotic cells, especially for the expression of whole
recombinant antibody molecule, are used for the expression of a recombinant antibody
molecule. For example, mammalian cells such as e Hamster Ovary (CHO) cells, in
ction with a vector such as the major intermediate early gene promoter element from
human cytomegalovirus is an effective sion system for dies; see, e. g., Foecking et
al., Gene 45 (1986), 101; Cockett et al., Bio/Technology 8 (1990), 2.
The host cell line used for protein expression is often ofmammalian origin; those skilled in the
art are credited with ability to preferentially determine particular host cell lines which are best
suited for the d gene product to be expressed therein. Exemplary host cell lines include,
but are not limited to, CH0 (Chinese Hamster Ovary), DG44 and DUXBll (Chinese Hamster
Ovary lines, DHFR minus), HELA (human cervical carcinoma), CVI (monkey kidney line),
COS (a tive of CV1 with SV40 T antigen), VERY, BHK (baby hamster kidney), MDCK,
W138, R1610 (Chinese hamster ast) BALBC/3T3 (mouse fibroblast), HAK (hamster
kidney line), SP2/O (mouse myeloma), P3x63-Ag3.653 (mouse myeloma), BFA-lclBPT
(bovine endothelial cells), RAJI (human lymphocyte) and 293 (human kidney). CH0 and 293
cells are particularly preferred. Host cell lines are typically available from commercial services,
the American Tissue Culture Collection or from published literature.
In addition, a host cell strain may be chosen which modulates the expression of the inserted
sequences, or s and processes the gene product in the specific fashion desired. Such
modifications (e.g, glycosylation) and processing (e.g., cleavage) of protein products may be
important for the fiinction of the protein. Different host cells have characteristic and specific
mechanisms for the ranslational processing and modification of proteins and gene
ts. Appropriate cell lines or host systems can be chosen to ensure the t modification
and processing ofthe foreign protein expressed. To this end, eukaryotic host cells which possess
the cellular machinery for proper sing of the primary transcript, glycosylation, and
phosphorylation of the gene product may be used.
For long-term, high-yield production of recombinant proteins, stable expression is preferred.
For example, cell lines which stably express the dy molecule may be engineered. Rather
than using expression vectors which contain viral origins of replication, host cells can be
transformed with DNA controlled by appropriate expression control elements (e.g., promoter,
er, sequences, transcription terminators, polyadenylation sites, etc.), and a selectable
marker. Following the introduction of the foreign DNA, engineered cells may be allowed to
grow for 1-2 days in an enriched media, and then are switched to a selective media. The
selectable marker in the recombinant plasmid confers resistance to the ion and allows cells
to stably integrate the d into their chromosomes and grow to form foci which in turn can
be cloned and expanded into cell lines. This method may advantageously be used to engineer
cell lines which stably express the antibody molecule.
A number of selection s may be used, including but not limited to the herpes simplex
virus thymidine kinase (Wigler et al., Cell 11 (1977), 223), hypoxanthine-guanine
phosphoribosyltransferase (Szybalska and Szybalski, Proc. Natl. Acad. Sci. USA 48 (1992),
202), and adenine phosphoribosyltransferase (Lowy et al., Cell 22 (1980), 817) genes can be
employed in tk-, hgprt- or aprt-cells, respectively. Also, anti-metabolite resistance can be used
as the basis of selection for the following genes: dhfr, which confers resistance to methotrexate
(Wigler et al., Natl. Acad. Sci. USA 77 (1980), 357; O'Hare et al., Proc. Natl. Acad. Sci. USA
78 (1981), 1527); gpt, which confers resistance to mycophenolic acid (Mulligan and Berg, Proc.
Natl. Acad. Sci. USA 78 (1981), 2072); neo, which confers resistance to the aminoglycoside
G-418 Goldspiel et al., Clinical Pharmacy 12 , 488-505; Wu and Wu, Biotherapy 3
(1991), 87-95; Tolstoshev, Ann. Rev. Pharmacol. Toxicol. 32 (1993), 573-596; Mulligan,
e 260 (1993), 2; and Morgan and Anderson, Ann. Rev. Biochem. 62 (1993), 191-
217; TIB TECH 11 (1993), 155-215; and hygro, which confers resistance to hygromycin
(Santerre et al., Gene 30 (1984), 147. Methods commonly known in the art of recombinant
DNA technology which can be used are described in Ausubel et al. (eds), Current Protocols in
lar Biology, John Wiley & Sons, NY ; Kriegler, Gene Transfer and Expression,
A Laboratory Manual, Stockton Press, NY ; and in Chapters 12 and 13, Dracopoli er al.
(eds), Current Protocols in Human Genetics, John Wiley & Sons, NY (1994); Colberre-Garapin
et al., J. Mol. Biol. 150:1 (1981), which are incorporated by reference herein in their entireties.
The sion levels of an antibody molecule can be increased by vector amplification, for a
; see Bebbington and Hentschel, The use of vectors based on gene amplification for the
expression of cloned genes in ian cells in DNA cloning, ic Press, New York,
Vol. 3. (1987). When a marker in the vector system sing antibody is amplifiable, increase
in the level of inhibitor present in culture of host cell will increase the number of copies of the
marker gene. Since the ed region is associated with the antibody gene, production of the
antibody will also increase; see Crouse et al., Mol. Cell. Biol. 3 (1983), 257.
In vitro production allows scale-up to give large amounts of the desired polypeptides.
Techniques for mammalian cell cultivation under tissue culture conditions are known in the art
and include homogeneous suspension culture, e.g. in an t reactor or in a continuous stirrer
reactor, or lized or entrapped cell e, e.g. in hollow fibers, microcapsules, on
agarose microbeads or ceramic cartridges. If necessary and/or desired, the solutions of
polypeptides can be purified by the customary chromatography methods, for example gel
filtration, ion-exchange chromatography, chromatography over DEAE-cellulose or (immuno-)
affinity chromatography, e. g., after preferential biosynthesis of a synthetic hinge region
polypeptide or prior to or uent to the HIC chromatography step described herein.
Genes ng antibodies, or antigen-binding fragments, variants or derivatives thereofofthe
invention can also be expressed in non-mammalian cells such as bacteria or insect or yeast or
plant cells. Bacteria which readily take up nucleic acids include members of the
enterobacteriaceae, such as s of E. coli or Salmonella; Bacillaceae, such as B. subtilis;
Pneumococcus; Streptococcus, and Haemophilus influenzae. It will r be appreciated that,
when expressed in bacteria, the heterologous polypeptides typically become part of inclusion
bodies. The heterologous polypeptides must be isolated, purified and then assembled into
nal molecules. Where tetravalent forms of antibodies are d, the subunits will then
self-assemble into tetravalent antibodies; see, e.g., international application W0 02/096948.
In bacterial systems, a number ofexpression vectors may be advantageously ed depending
upon the use intended for the antibody molecule being expressed. For example, when a large
quantity of such a protein is to be produced, for the generation of pharmaceutical compositions
of an antibody molecule, vectors which direct the sion of high levels of filSlOIl protein
products that are readily purified may be desirable. Such vectors include, but are not limited, to
the E. coli expression vector pUR278 (Ruther et al, EMBO J. 2 (1983), 1791), in which the
antibody coding sequence may be ligated individually into the vector in frame with the lacZ
coding region so that a fusion protein is produced; pIN vectors (Inouye and Inouye, Nucleic
Acids Res. 13 (1985), 3101-3109; Van Heeke and Schuster, J. Biol. Chem. 24 (1989), 5503-
5509); and the like. pGEX vectors may also be used to express n ptides as fusion
proteins with glutathione S-transferase (GST). In general, such fusion proteins are soluble and
can easily be purified from lysed cells by adsorption and binding to a matrix of glutathione-
agarose beads followed by elution in the presence of free glutathione. The pGEX vectors are
designed to include thrombin or factor Xa protease cleavage sites so that the cloned target gene
product can be released from the GST moiety.
In addition to prokaryotes, eukaryotic microbes may also be used. Saccharomyces cerevisiae,
or common baker's yeast, is the most commonly used among eukaryotic microorganisms
although a number ofother strains are commonly available, e.g., Pichia pastoris. For expression
in Saccharomyces, the plasmid YRp7, for example, (Stinchcomb et al., Nature 282 (1979), 39;
Kingsman et (1]., Gene 7 (1979), 141; Tschemper er al., Gene 10 (1980), 157) is commonly
used. This plasmid already contains the TRPl gene which provides a selection marker for a
mutant strain of yeast lacking the y to grow in tryptophan, for e ATCC No. 44076
or PEP4-1 (Jones, Genetics 85 (1977), 12). The presence of the trpl lesion as a characteristic of
the yeast host cell genome then provides an effective environment for detecting transformation
by growth in the absence of tryptophan.
In an insect system, Autographa calz‘form’ca nuclear polyhedrosis virus (AcNPV) is typically
used as a vector to express foreign genes. The virus grows in Spodoptera frugz'perda cells. The
antibody coding sequence may be cloned individually into non-essential regions (for e
the polyhedrin gene) of the virus and placed under control of an AcNPV promoter (for example
the polyhedrin promoter).
Once an dy molecule of the invention has been recombinantly expressed, the whole
antibodies, their dimers, individual light and heavy chains, or other immunoglobulin forms of
the present invention, can be purified according to standard procedures of the art, including for
example, by tography (e.g, ion exchange, affinity, particularly by affinity for the
specific antigen after n A, and sizing column chromatography), centrifiigation,
differential solubility, e. g. ammonium sulfate precipitation, or by any other standard que
for the purification of proteins; see, e.g., Scopes, in Purification", Springer , NY.
(1982). Alternatively, a red method for increasing the affinity of antibodies of the
invention is disclosed in US patent publication 2002-0123057 A1. In one embodiment
therefore, the t invention also es a method for preparing an anti-HTT antibody or
an antibody recognizing mutated and/or aggregated HTT s and/or fragments thereof or
immunoglobulin chain(s) thereof, said method comprising:
(a) culturing the host cell as defined hereinabove, which cell comprised a polynucleotide or
a vector as defined hereinbefore; and
(b) ing said antibody or immunoglobulin chain(s) thereof from the culture.
Furthermore, in one embodiment the t invention also relates to an antibody or
immunoglobulin s) thereof encoded by a polynucleotide as defined hereinabove or
obtainable by said method for preparing an anti-HTT antibody or an antibody recognizing
mutated and/or ated HTT s and/or fragments thereof or immunoglobulin chain(s)
thereof.
V. Fusion Proteins and Conjugates
In n embodiments, the antibody polypeptide comprises an amino acid sequence or one or
more moieties not normally associated with an antibody. Exemplary modifications are
bed in more detail below. For example, a single-chain Fv antibody fragment of the
invention may comprise a flexible linker sequence, or may be modified to add a functional
moiety (e.g., PEG, a drug, a toxin, or a label such as a fluorescent, radioactive, enzyme, nuclear
magnetic, heavy metal and the like)
An dy polypeptide of the invention may comprise, consist essentially of, or consist of a
filSlOIl protein. Fusion proteins are chimeric molecules which comprise, for example, an
immunoglobulin HTT-binding domain with at least one target binding site, and at least one
heterologous portion, z'.e., a portion with which it is not naturally linked in nature. The amino
acid sequences may normally exist in separate proteins that are brought together in the fusion
ptide or they may normally exist in the same protein but are placed in a new arrangement
in the filSlOIl polypeptide. Fusion proteins may be created, for e, by chemical synthesis,
or by creating and translating a polynucleotide in which the peptide regions are encoded in the
desired relationship.
The term "heterologous" as applied to a polynucleotide or a polypeptide, means that the
polynucleotide or polypeptide is derived from a distinct entity from that of the rest of the entity
to which it is being compared. For instance, as used herein, a "heterologous polypeptide" to be
fiised to an antibody, or an antigen-binding fragment, variant, or analog thereof is derived from
a munoglobulin polypeptide of the same s, or an globulin or non-
immunoglobulin polypeptide of a different species.
As discussed in more detail elsewhere herein, antibodies, or antigen-binding fragments,
variants, or derivatives thereof of the invention may further be recombinantly fused to a
heterologous polypeptide at the N— or C-terminus or chemically conjugated ding covalent
and valent ations) to ptides or other compositions. For example, antibodies
may be recombinantly fused or conjugated to molecules useful as labels in detection assays and
or molecules such as heterologous polypeptides, drugs, radionuclides, or ; see, e.g.,
international applications WO 92/08495; W0 91/14438; W0 89/12624; US patent no.
,314,995; and European patent application EP 0 396 387.
Antibodies, or antigen-binding fragments, variants, or derivatives thereof of the invention can
be composed of amino acids joined to each other by peptide bonds or d peptide bonds,
z'.e., peptide isosteres, and may contain amino acids other than the 20 gene-encoded amino acids.
Antibodies may be d by natural processes, such as posttranslational processing, or by
chemical modification techniques which are well known in the art. Such modifications are well
described in basic texts and in more ed monographs, as well as in a voluminous research
literature. ations can occur anywhere in the antibody, including the peptide backbone,
the amino acid side-chains and the amino or carboxyl termini, or on moieties such as
carbohydrates. It will be appreciated that the same type of modification may be present in the
same or varying degrees at several sites in a given antibody. Also, a given antibody may contain
many types of modifications. Antibodies may be ed, for example, as a result of
ubiquitination, and they may be cyclic, with or without branching. Cyclic, branched, and
branched cyclic antibodies may result from posttranslational natural processes or may be made
by synthetic methods. Modifications include acetylation, acylation, ADP-ribosylation,
amidation, covalent attachment of flavin, covalent attachment of a heme moiety, covalent
attachment of a nucleotide or nucleotide derivative, covalent attachment of a lipid or lipid
derivative, covalent attachment of phosphatidylinositol, cross-linking, cyclization, disulfide
bond formation, demethylation, formation of covalent cross-links, formation of cysteine,
formation of pyroglutamate, formylation, gamma—carboxylation, glycosylation, GPI anchor
formation, hydroxylation, iodination, methylation, myristoylation, oxidation, pegylation,
proteolytic processing, phosphorylation, prenylation, racemization, selenoylation, sulfation,
er-RNA mediated addition of amino acids to proteins such as arginylation, and
ubiquitination; see, e.g., Proteins - Structure And lar Properties, T. E. ton, W. H.
Freeman and Company, New York 2nd Ed., ; anslational Covalent Modification
OfProteins, B. C. Johnson, Ed., Academic Press, New York, (1983) 1-12; Seifter et al., Meth.
Enzymol. 182 , 626-646; Rattan et al., Ann. NY Acad. Sci. 663 (1992), 48-62).
The present invention also provides for fusion proteins comprising an antibody, or antigen-
binding fragment, t, or tive thereof, and a heterologous polypeptide. In one
embodiment, a fusion protein of the invention comprises, consists essentially of, or consists of,
a polypeptide having the amino acid ce of any one or more of the VH regions of an
antibody of the invention or the amino acid sequence of any one or more of the VL regions of
an antibody of the ion or fragments or variants thereof, and a heterologous polypeptide
sequence. In another embodiment, a fusion protein for use in the diagnostic and treatment
methods sed herein comprises, consists essentially of, or consists of a polypeptide having
the amino acid sequence of any one, two, three of the VH-CDRs of an antibody, or fragments,
variants, or derivatives thereof, or the amino acid sequence of any one, two, three of the VL-
CDRs of an antibody, or fragments, ts, or derivatives thereof, and a heterologous
ptide sequence. In one embodiment, the filSiOIl protein comprises a polypeptide having
the amino acid sequence of a VH-CDR3 of an antibody ofthe present invention, or fragment,
tive, or variant thereof, and a heterologous polypeptide sequence, which fiision n
specifically binds to HTT. In another embodiment, a fusion protein comprises a polypeptide
having the amino acid ce of at least one VH region of an antibody of the ion and
the amino acid sequence of at least one VL region of an antibody of the invention or fragments,
derivatives or variants thereof, and a heterologous polypeptide sequence. Preferably, the VH
and VL s of the fiJsion protein correspond to a single source antibody (or scFV or Fab
fragment) which specifically binds HTT. In yet another embodiment, a fusion protein for use
in the diagnostic and treatment methods disclosed herein comprises a polypeptide having the
amino acid sequence of any one, two, three, or more of the VH CDRs of an antibody and the
amino acid sequence of any one, two, three, or more of the VL CDRs of an antibody, or
fragments or variants thereof, and a heterologous polypeptide sequence. Preferably, two, three,
four, five, six, or more of the VH-CDR(s) or VL-CDR(s) correspond to single source antibody
(or scFV or Fab fragment) of the invention. Nucleic acid molecules encoding these fusion
proteins are also assed by the invention.
Exemplary fusion ns reported in the literature include qulOI‘lS of the T cell receptor
(Gascoigne er al., Proc. Natl. Acad. Sci. USA 84 (1987), 2936-2940; CD4 (Capon er al., Nature
337 (1989), 1; Traunecker er al., Nature 339 (1989), 68-70; Zettrneissl et (11., DNA Cell
Biol. USA 9 (1990), 347-353; and Byrn et al., Nature 344 (1990), 667-670); L-selectin (homing
receptor) (Watson et al., J. Cell. Biol. 110 (1990), 2221-2229; and Watson et al., Nature 349
(1991), 164-167); CD44 (Aruffo et al., Cell 61 (1990), 1303-1313); CD28 and B7 (Linsley et
al., J. Exp. Med. 173 (1991),721-730); CTLA-4 (Lisley et al., J. Exp. Med. 174 (1991), 561-
569); CD22 (Stamenkovic er al., Cell 66 (1991), 1133-1144); TNF receptor (Ashkenazi et al.,
Proc. Natl. Acad. Sci. USA 88 (1991), 10539; Lesslauer et al., Eur. J. Immunol. 27
(1991), 2883-2886; and Peppel et al., J. Exp. Med. 174 (1991), 1483-1489 (1991); and IgE
receptor a (Ridgway and Gorman, J. Cell. Biol. 115 (1991), Abstract No. 1448).
As discussed ere herein, dies, or antigen-binding fragments, variants, or
derivatives thereof of the invention may be fused to heterologous polypeptides to increase the
in viva half—life of the polypeptides or for use in immunoassays using methods known in the
art. For e, in one embodiment, PEG can be conjugated to the antibodies of the invention
to increase their half-life in viva; see, e. g., Leong et al., Cytokine 16 (2001), 106—119; Adv. in
Drug Deliv. Rev. 54 (2002), 531; or Weir et al., Biochem. Soc. Transactions 30 (2002), 512.
Moreover, antibodies, or antigen-binding fragments, variants, or derivatives thereof of the
invention can be fused to marker ces, such as a e to facilitate their purification or
ion. In red embodiments, the marker amino acid sequence is a hexa-histidine
peptide (HIS), such as the tag provided in a pQE vector (QIAGEN, Inc., 9259 Eton Avenue,
Chatsworth, Calif., 91311), among others, many of which are commercially available. As
described in Gentz et al., Proc. Natl. Acad. Sci. USA 86 (1989), 821-824, for instance, hexa-
ine provides for convenient ation of the fusion protein. Other peptide tags useful
for purification include, but are not limited to, the "HA" tag, which ponds to an e
derived from the za hemagglutinin protein (Wilson et al., Cell 37 (1984), 767), GST, c-
mycand the "flag" tag; see, e.g, Bill Brizzard, hniques 44 (2008) 693-695 for a review
ofepitope tagging techniques, and Table 1 on page 694 therein listing the most common epitope
tags usable in the present invention, the subject matter of which is hereby expressly
incorporated by reference.
Fusion proteins can be prepared using methods that are well known in the art; see for example
US patent nos. 5,116,964 and 5,225,538. The precise site at which the fusion is made may be
selected empirically to ze the secretion or binding characteristics of the filSlOIl protein.
DNA encoding the fiision protein is then transfected into a host cell for expression, which is
performed as described hereinbefore.
Antibodies ofthe present invention may be used in non-conjugated form or may be conjugated
to at least one of a variety of molecules, e.g., to improve the therapeutic ties of the
molecule, to facilitate target detection, or for imaging or therapy of the patient. Antibodies, or
antigen-binding fragments, variants, or derivatives thereof of the invention can be labeled or
conjugated either before or after purification, when purification is performed. In particular,
antibodies, or antigen-binding fragments, variants, or derivatives thereof of the invention may
be conjugated to therapeutic agents, prodrugs, peptides, proteins, enzymes, Viruses, lipids,
biological response modifiers, pharmaceutical agents, or PEG.
Conjugates that are immunotoxins including conventional antibodies have been widely
described in the art. The toxins may be d to the antibodies by tional coupling
techniques or immunotoxins containing protein toxin portions can be produced as fusion
ns. The antibodies of the present invention can be used in a corresponding way to obtain
such immunotoxins. Illustrative of such immunotoxins are those described by Byers, Seminars
Cell. Biol. 2 (1991), 59-70 and by Fanger, Immunol. Today 12 (1991), 51-54.
Those skilled in the art will iate that conjugates may also be led using a variety
oftechniques depending on the selected agent to be conjugated. For example, conjugates with
biotin are prepared, e.g., by reacting a HTT-binding polypeptide with an activated ester in
such as the biotin N—hydroxysuccinimide ester. Similarly, conjugates with a fluorescent marker
may be prepared in the presence ofa coupling agent, e.g. those listed herein, or by reaction with
an ocyanate, preferably fluorescein-isothiocyanate. Conjugates of the dies, or
antigen-binding fragments, variants or derivatives thereof of the invention are prepared in an
analogous manner.
The present invention further encompasses antibodies, or antigen-binding fragments, ts,
or derivatives thereof of the invention conjugated to a diagnostic or therapeutic agent. The
antibodies can be used diagnostically to, for example, demonstrate presence of a HTT
amyloidosis to indicate the risk of getting a disease or disorder associated with mutated and/or
aggregated HTT, to r the development or progression of such a disease, zle. a e
showing the ence of, or related to aggregated HTT, or as part of a clinical testing
procedure to, e.g., determine the efficacy of a given treatment and/or prevention regimen. In
one embodiment thus, the present invention relates to an dy, which is detectably labeled.
Furthermore, in one embodiment, the t ion relates to an dy, which is attached
to a drug. ion can be facilitated by coupling the antibody, or antigen-binding fragment,
variant, or derivative thereof to a detectable substance. The detectable substances or label may
be in general an enzyme; a heavy metal, preferably gold; a dye, preferably a fluorescent or
luminescent dye; or a radioactive label. Examples of detectable substances include s
enzymes, prosthetic groups, fluorescent materials, luminescent materials, bioluminescent
materials, radioactive materials, positron emitting metals using various positron emission
tomographies, and nonradioactive gnetic metal ions; see, e.g., US patent no. 4,741,900
for metal ions which can be conjugated to antibodies for use as stics according to the
present invention. Examples of suitable enzymes e horseradish peroxidase, alkaline
phosphatase, beta-galactosidase, or acetylcholinesterase; examples of suitable prosthetic group
complexes include streptavidin/biotin and /biotin; examples of le fluorescent
materials include umbelliferone, fluorescein, fluorescein isothiocyanate, rhodamine,
dichlorotriazinylamine cein, dansyl chloride or phycoerythrin; an example of a
luminescent material includes luminol; es of bioluminescent materials include
luciferase, luciferin, and aequorin; and examples of suitable radioactive material include 125I,
131I, 111In or 99Tc. Therefore, in one embodiment the present invention provides a detectably
labeled dy, wherein the detectable label is selected from the group consisting of an
enzyme, a radioisotope, a fluorophore and a heavy metal.
An antibody, or antigen-binding fragment, variant, or derivative thereof also can be detectably
labeled by coupling it to a chemiluminescent compound. The presence of the
chemiluminescent-tagged antibody is then determined by ing the presence of
luminescence that arises during the course of a chemical reaction. es of ularly
useful chemiluminescent labeling compounds are luminol, isoluminol, theromatic acridinium
ester, imidazole, acridinium salt and oxalate ester.
One of the ways in which an antibody, or antigen-binding fragment, variant, or derivative
thereof can be detectably labeled is by linking the same to an enzyme and using the linked
product in an enzyme assay (EIA) (Voller, A., "The Enzyme Linked Imrnunosorbent
Assay (ELISA)" Microbiological Associates Quarterly Publication, Walkersville, Md,
Diagnostic Horizons 2 , l-7); Voller et al., J. Clin. Pathol. 31 (1978), 507-520; Butler,
Meth. Enzymol. 73 (1981), 482-523; Maggio, (ed.), Enzyme Immunoassay, CRC Press, Boca
Raton, Fla., (1980); Ishikawa, et al., (eds.), Enzyme Immunoassay, Kgaku Shoin, Tokyo
(1981). The enzyme, which is bound to the antibody, will react with an appropriate substrate,
ably a genic substrate, in such a manner as to produce a chemical moiety which
can be detected, for example, by spectrophotometric, fluorimetric or by visual means. Enzymes
which can be used to detectably label the antibody include, but are not limited to, malate
dehydrogenase, staphylococcal nuclease, deltasteroid isomerase, yeast alcohol
dehydrogenase, alpha-glycerophosphate, dehydrogenase, triose phosphate isomerase,
horseradish peroxidase, alkaline phosphatase, asparaginase, glucose oxidase, beta-
galactosidase, clease, urease, catalase, glucosephosphate ogenase,
mylase and acetylcholinesterase. Additionally, the detection can be accomplished by
colorimetric methods which employ a chromogenic substrate for the enzyme. Detection may
also be accomplished by visual comparison of the extent of enzymatic reaction of a substrate in
comparison with similarly prepared standards.
Detection may also be accomplished using any of a variety of other immunoassays. For
example, by radioactively labeling the antibody, or antigen-binding fragment, variant, or
derivative thereof, it is possible to detect the antibody through the use of a mmunoassay
(RIA) (see, for example, Weintraub, B., Principles of Radioimmunoassays, Seventh Training
Course on Radioligand Assay Techniques, The Endocrine y, (March, 1986)), which is
incorporated by reference herein). The ctive isotope can be detected by means including,
but not limited to, a gamma counter, a scintillation counter, or autoradiography.
An antibody, or antigen-binding fragment, variant, or derivative thereof can also be detectably
d using fluorescence emitting metals such as 152Eu, or others of the lanthanide series.
These metals can be attached to the antibody using such metal chelating groups as
diethylenetriaminepentacetic acid (DTPA) or ethylenediaminetetraacetic acid (EDTA).
ques for conjugating s moieties to an antibody, or antigen-binding fragment,
variant, or derivative thereof are well known, see, e.g., Arnon et al., "Monoclonal Antibodies
For Immunotargeting Of Drugs In Cancer Therapy", in Monoclonal Antibodies And Cancer
Therapy, Reisfeld et al. , pp. 243-56 (Alan R. Liss, Inc. (1985); Hellstrom et al.,
"Antibodies For Drug Delivery", in Controlled Drug Delivery (2nd Ed), Robinson et al. (eds),
Marcel Dekker, Inc., (1987) ; , "Antibody Carriers Of Cytotoxic Agents In
Cancer Therapy: A ", in Monoclonal Antibodies '84: ical And Clinical
Applications, Pinchera et al. (eds), (1985) 475-506; "Analysis, Results, And Future
Prospective Of The Therapeutic Use Of Radiolabeled Antibody In Cancer Therapy", in
Monoclonal Antibodies For Cancer Detection And Therapy, Baldwin et al. (eds), ic
Press (1985) 303—16, and Thorpe er al., "The Preparation And Cytotoxic Properties Of
Antibody-Toxin Conjugates", Immunol. Rev. 62 (1982), 119-158.
As mentioned, in certain embodiments, a moiety that enhances the stability or efficacy of a
binding molecule, e.g, a binding polypeptide, e.g., an antibody or immunospecific fragment
thereof can be conjugated. For example, in one embodiment, PEG can be conjugated to the
binding molecules ofthe ion to increase their half-life in viva. Leong et al., Cytokine 16
(2001), 106; Adv. in Drug DeliV. Rev. 54 , 531; or Weir et (1]., Biochem. Soc.
ctions 30 , 512.
VI. Compositions and Methods of Use
The t invention relates to compositions comprising the aforementioned HTT-binding
molecule, e.g, antibody or antigen—binding fragment thereof of the present invention or
derivative or variant thereof, or the polynucleotide, vector or cell of the invention as defined
hereinbefore. In one ment, the composition of the present invention is a pharmaceutical
composition and further comprises a pharmaceutically acceptable carrier. Furthermore, the
pharmaceutical composition of the present invention may comprise further agents such as
interleukins or interferons depending on the intended use of the pharmaceutical composition.
For use in the treatment ofa disease or er showing the occurrence of, or related to mutated
and/or aggregated HTT, such as HTT amyloidosis, the additional agent may be ed from
the group consisting of small organic molecules, anti-HTT antibodies, and combinations
thereof. Hence, in a particular red embodiment the present invention s to the use of
the HTT-binding molecule, e.g., antibody or antigen-binding fragment thereof of the present
invention or of a binding molecule having ntially the same binding specificities of any
one thereof, the cleotide, the vector or the cell ofthe t invention for the preparation
of a pharmaceutical or diagnostic ition for prophylactic and therapeutic treatment of
Huntington's disease (HD) and/or a disease or disorder associated with HTT and/or HTT
amyloidosis, monitoring the progression of HD and/or a disease or disorder ated with
HTT and/or HTT amyloidosis or a response to a HTT amyloidosis treatment in a subject or for
determining a subj ect's risk for developing a disease or disorder associated with HTT.
Hence, in one embodiment the present invention relates to a method of treating a disease or
disorder characterized by al accumulation and/or deposition of HTT and/or aggregated
and/or mutated HTT in affected systems and organs which method comprises administering to
a subject in need thereof a therapeutically ive amount of any one of the afore-described
HTT-binding molecules, antibodies, polynucleotides, vectors or cells of the instant invention.
A particular advantage of the therapeutic approach of the present ion lies in the fact that
the recombinant antibodies of the present invention are derived from B cells or memory B cells
from healthy human subjects with no signs or symptoms of a disease, e. g. carrying an
omatic mutation and/or ons, showing the occurrence of, or related to aggregated
HTT and thus are, with a certain probability, capable of preventing a clinically manifest disease
related to mutated and/or aggregated HTT, or of diminishing the risk of the ence of the
clinically manifest disease or disorder, or of delaying the onset or ssion of the ally
manifest disease or disorder. Typically, the antibodies ofthe present invention also have already
successfully gone through somatic maturation, z'. e. the optimization with respect to selectivity
and effectiveness in the high affinity binding to the target HTT molecule by means of somatic
variation of the variable regions of the antibody.
The knowledge that such cells in viva, e. g. in a human, have not been activated by means of
related or other physiological proteins or cell ures in the sense of an autoimmunological
or allergic reaction is also of great medical importance since this signifies a considerably
increased chance of successfully living through the clinical test phases. So to speak, efficiency,
acceptability and tolerability have already been demonstrated before the preclinical and clinical
development of the prophylactic or therapeutic antibody in at least one human subject. It can
thus be expected that the human-derived anti-HTT antibodies of the present invention, both its
target structure-specific efficiency as therapeutic agent and its decreased probability of side
effects cantly increase its clinical probability of s.
The present invention also provides a pharmaceutical and diagnostic, respectively, pack or kit
sing one or more ners filled with one or more of the above described ingredients,
e. g. anti-HTT antibody, binding fragment, derivative or variant thereof, polynucleotide, vector
or cell of the present ion. Associated with such container(s) can be a notice in the form
prescribed by a governmental agency regulating the manufacture, use or sale maceuticals
or biological products, which notice reflects approval by the agency ofmanufacture, use or sale
for human administration. In addition or alternatively the kit comprises reagents and/or
ctions for use in appropriate diagnostic assays. The composition, e.g. kit of the present
ion is of course particularly suitable for the risk assessment, diagnosis, prevention and
treatment of Huntington's disease and/or a e or disorder which is accompanied with the
presence of mutated and/or ated HTT, and in particular applicable for the treatment of
disorders generally terized by HTT amyloidosis.
The pharmaceutical compositions of the present invention can be ated according to
methods well known in the art; see for example Remington: The Science and ce of
Pharmacy (2000) by the University ofSciences in Philadelphia, ISBN 0306472. Examples
of suitable pharmaceutical rs are well known in the art and include ate buffered
saline solutions, water, emulsions, such as oil/water emulsions, various types of wetting agents,
sterile solutions etc. Compositions comprising such carriers can be formulated by well-known
conventional methods. These pharmaceutical compositions can be administered to the subject
at a le dose. Administration of the suitable compositions may be effected by different
ways, e.g., by intravenous, eritoneal, subcutaneous, intramuscular, asal, topical or
intradermal administration or spinal or brain delivery. l formulations such as nasal spray
ations include purified aqueous or other solutions of the active agent with preservative
agents and isotonic agents. Such formulations are preferably adjusted to a pH and isotonic state
compatible with the nasal mucous membranes. Formulations for rectal or vaginal
administration may be presented as a suppository with a le carrier.
The dosage regimen will be determined by the attending physician and clinical factors. As is
well known in the medical arts, dosages for any one patient depends upon many factors,
including the patient‘s size, body surface area, age, the particular compound to be administered,
sex, time and route of administration, general health, and other drugs being administered
concurrently. A typical dose can be, for example, in the range of 0.001 to 1000 ug (or ofnucleic
acid for expression or for inhibition of expression in this range); however, doses below or above
this exemplary range are envisioned, especially considering the aforementioned factors.
lly, the dosage can range, e.g., from about 0.0001 to 100 mg/kg, and more usually 0.01
to 5 mg/kg (e.g., 0.02 mg/kg, 0.25 mg/kg, 0.5 mg/kg, 0.75 mg/kg, 1 mg/kg, 2 mg/kg, etc.), of
the host body weight. For example dosages can be 1 mgkg body weight or 10 mg/kg body
weight or within the range of 1-10 mg/kg, preferably at least 1 mg/kg. Doses intermediate in
the above ranges are also intended to be within the scope of the invention. Subjects can be
administered such doses daily, on alternative days, weekly or according to any other schedule
determined by empirical analysis. An exemplary treatment entails stration in multiple
dosages over a prolonged , for example, of at least six months. Additional exemplary
treatment regimens entail administration once per every two weeks or once a month or once
every 3 to 6 months. Exemplary dosage schedules include 1-10 mg/kg or 15 mg/kg on
consecutive days, 30 mg/kg on alternate days or 60 mg/kg weekly. In some methods, two or
more monoclonal antibodies with different binding specificities are administered
simultaneously, in which case the dosage of each antibody administered falls within the ranges
indicated. Progress can be monitored by periodic assessment. ations for parenteral
administration include sterile aqueous or non-aqueous solutions, suspensions, and emulsions.
Examples of non-aqueous solvents are propylene , hylene glycol, vegetable oils
such as olive oil, and injectable c esters such as ethyl oleate. Aqueous carriers e
water, alcoholic/aqueous solutions, emulsions or suspensions, including saline, and buffered
media. Parenteral vehicles include sodium chloride solution, Ringer's dextrose, dextrose and
sodium chloride, lactated Ringer's, or fixed oils. Intravenous vehicles include fluid and nutrient
replenishers, olyte replenishers (such as those based on Ringer's dextrose), and the like.
Preservatives and other additives may also be present such as, for example, antimicrobials, anti-
oxidants, chelating agents, and inert gases, and the like. Furthermore, the pharmaceutical
ition of the invention may comprise further agents such as dopamine or
psychopharmacologic drugs, depending on the intended use of the pharmaceutical composition.
Furthermore, in a preferred embodiment of the present invention the pharmaceutical
composition may be formulated as a vaccine, for example, if the pharmaceutical composition
of the invention comprises an anti-HTT antibody or HTT-binding fragment, tive or
synthetic or biotechnological t f for e immunization. As mentioned in the
background section mutated and/or aggregated HTT s and/or fragments or derivatives
thereof are a major trigger for HTT amyloidosis. Accordingly, it is prudent to expect that
passive immunization with human anti-HTT dies and equivalent HTT-binding molecules
ofthe present invention will help to vent several adverse effects of active immunization
therapy concepts and lead to a reduced aggregation of HTT. Therefore, the present anti-HTT
antibodies and their lents of the present invention will be particularly useful as a vaccine
for the prevention or amelioration of diseases or disorders showing the presence of, or caused
by aggregated HTT such as HD.
In one embodiment, it may be beneficial to use recombinant Fab (rFab) and single chain
fragments (scFvs) of the antibody of the present invention, which might more readily penetrate
a cell membrane. For example, Robert et (1]., Protein Eng. Des. Sel. (2008); 81741—0134,
published online ahead, describe the use of chimeric recombinant Fab (rFab) and single chain
fragments (scFvs) clonal antibody WO-2 which recognizes an epitope in the N—terminal
region of Abeta. The engineered fragments were able to (i) prevent amyloid fibrillization, (ii)
disaggregate preformed Abeta1-42 fibrils and (iii) inhibit Abeta1-42 oligomer-mediated
neurotoxicity in vitro as efficiently as the whole IgG le. The perceived advantages of
using small Fab and scFv engineered antibody formats which lack the effector on include
more efficient passage across the blood-brain barrier and minimizing the risk of triggering
atory side reactions. Furthermore, besides scFv and single-domain antibodies retain the
binding specificity of full-length antibodies, they can be sed as single genes and
intracellularly in ian cells as intrabodies, with the potential for alteration of the g,
interactions, modifications, or subcellular localization of their targets; see for review, e.g.,
Miller and Messer, Molecular Therapy 12 , 394—401.
In a different approach Muller et (11., Expert Opin. Biol. Ther. (2005), 237-241, describe a
technology platform, so-called 'SuperAntibody Techno logy', which is said to enable antibodies
to be shuttled into living cells without g them. Such cell-penetrating antibodies open
new diagnostic and therapeutic windows. The term 'TransMabs' has been coined for these
antibodies.
In a further embodiment, co-administration or sequential administration of other antibodies
useful for treating a e, er, or symptoms related to the occurrence of mutated and/or
aggregated HTT may be desirable. In one embodiment, the additional antibody is comprised in
the pharmaceutical composition ofthe present ion. Examples of antibodies which can be
used to treat a subject include, but are not limited to, antibodies ing CD33, SGLT2, IL-6,
and IL-1.
In a further embodiment, co-administration or sequential administration of other agents useful
for treating a disease, disorder, or symptoms related to mutated and/or aggregated HTT, may
be desirable. In one embodiment, the additional agent is comprised in the pharmaceutical
composition of the present ion. Examples of agents which can be used to treat a subject
include, but are not limited to: VMAT2 tors targeting involuntary muscle movements
such as XenazineTM, anti-inflammatory agents such as diflusinal, corticosteroids, 2-(2,6-
dichloranilino) phenylacetic acid (diclofenac), iso-butyl-propanoic-phenolic acid (ibuprofen);
diuretics, Epigallocatechin gallate, Melphalan hydrochloride, dexamethasone, Bortezomib,
Bortezomib-Melphalan, Bortezomib-dexamethasone, lan-dexamethasone, omib-
Melphalan— thasone; pressants, antipsychotic drugs, neuroleptics, antidementiva
(e. g. the NMDA-rezeptor antagonist memantine), acetylcholinesterase inhibitors (e. g.
Donepezil, HCI, Rivastigmine, Galantamine), glutamat-antagonists and other nootropics blood
pressure medication (e.g. Dihydralazin, Methyldopa), cytostatics, glucocorticoides,
angiotensin—converting-enzyme (ACE) inhibitors; anti-inflammatory agents or any
combination thereof.
A therapeutically effective dose or amount refers to that amount of the active ingredient
sufficient to rate the symptoms or condition. Therapeutic efficacy and toxicity of such
compounds can be determined by standard pharmaceutical procedures in cell cultures or
experimental animals, e.g, EDso (the dose therapeutically effective in 50% of the population)
and LDso (the dose lethal to 50% of the population). The dose ratio between therapeutic and
toxic effects is the therapeutic index, and it can be expressed as the ratio, LDso/EDso.
From the foregoing, it is evident that the present invention asses any use of an HTT-
g molecule and/or nts thereof comprising at least one CDR of the above described
antibody, in particular for diagnosing and/or treatment of a disease or disorder related to
mutated and/or aggregated HTT species and/or fragments thereof as mentioned above, such as
HD and/or HTT amyloidosis. Preferably, said binding molecule is an antibody of the present
invention or an immunoglobulin chain thereof. In on, the present ion relates to anti-
pic antibodies of any one of the mentioned dies described hereinbefore. These are
antibodies or other binding molecules which bind to the unique antigenic peptide sequence
located on an antibody's variable region near the antigen-binding site and are useful, e.g., for
the detection of anti-HTT antibodies in a sample obtained from a t. In one embodiment
thus, the present invention provides an antibody as defined hereinabove and below or a HTT-
binding molecule having substantially the same binding cities of any one thereof, the
polynucleotide, the vector or the cell as defined herein or a pharmaceutical or diagnostic
composition comprising any one thereof for use in prophylactic treatment, therapeutic treatment
and/or monitoring the ssion or a response to treatment of a disease or disorder related to
HTT, preferably wherein the disorder is associated with HTT amyloidosis, such as Huntington's
disease (HD).
In another embodiment the present invention relates to a stic composition comprising
any one of the above described HTT-binding molecules, antibodies, antigen-binding fragments,
polynucleotides, vectors or cells of the invention and optionally suitable means for detection
such as reagents conventionally used in immuno- or nucleic ased diagnostic s.
The antibodies of the invention are, for example, suited for use in immunoassays in which they
can be ed in liquid phase or bound to a solid phase r. Examples of immunoassays
which can utilize the antibody of the invention are competitive and non-competitive
immunoassays in either a direct or indirect format. Examples of such immunoassays are the
radioimmunoassay (RIA), the sandwich (immunometric assay), flow cytometry, and the
Western blot assay. The ns and antibodies ofthe invention can be bound to many different
carriers and used to isolate cells specifically bound thereto. Examples of well-known carriers
include glass, polystyrene, polyvinyl chloride, opylene, hylene, polycarbonate,
dextran, nylon, amyloses, natural and modified celluloses, polyacrylamides, agaroses, and
magnetite. The nature of the carrier can be either soluble or insoluble for the purposes of the
invention. There are many different labels and methods of labeling known to those ofordinary
skill in the art. Examples of the types of labels which can be used in the present invention
include s, radioisotopes, dal metals, fluorescent compounds, chemiluminescent
nds, and bioluminescent compounds; see also the embodiments discussed hereinabove.
By a further embodiment, the nding molecules, in particular antibodies of the present
invention may also be used in a method for the diagnosis ofa disease or disorder in an individual
by obtaining a body fluid sample from the tested individual which may be a blood , a
plasma sample, a serum sample, a lymph sample or any other body fluid sample, such as a
saliva or a urine sample and contacting the body fluid sample with an antibody of the instant
invention under conditions enabling the formation of antibody-antigen xes. The level of
such complexes is then determined by methods known in the art, a level significantly higher
than that formed in a control sample indicating the disease or disorder in the tested individual.
In the same manner, the specific antigen bound by the antibodies of the invention may also be
used. Thus, the present invention relates to an in vitro immunoassay comprising the binding
molecule, 6.g. , antibody or antigen-binding fragment thereof of the invention.
In a further embodiment of the present ion the HTT-binding molecules, in particular
dies of the present invention may also be used in a method for the diagnosis of a disease
or er in an dual by obtaining a biopsy from the tested individual.
In this context, the present invention also s to means specifically designed for this purpose.
For example, an antibody-based array may be used, which is for example loaded with antibodies
or equivalent antigen-binding molecules of the present invention which specifically recognize
HTT. Design of microarray immunoassays is summarized in Kusnezow et £21., Mol. Cell
Proteomics 5 (2006), 1681-1696. ingly, the present invention also relates to microarrays
loaded with HTT—binding molecules identified in accordance with the present invention.
In one embodiment, the present invention relates to a method ofdiagnosing a disease or disorder
related to d and/or aggregated HTT species and/or fragments thereof in a t, the
method comprising determining the presence of HTT and/or mutated and/or aggregated HTT
in a sample from the subject to be diagnosed with at least one antibody ofthe present invention,
a HTT-binding fragment thereof or an HTT-binding molecule having substantially the same
binding specificities of any one thereof, wherein the presence of ogically mutated and/or
aggregated HTT is indicative for HD and/or HTT amyloidosis and an increase of the level of
the pathologically mutated and/or aggregated HTT in comparison to the level of the
physiological HTT is indicative for progression ofHD and/or HTT amyloidosis in said subject.
The subject to be diagnosed may be asymptomatic or nical for the e. Preferably, the
control subject has a disease associated with mutated and/or aggregated HTT, e.g. Huntington's
disease (HD), n a similarity between the level of pathologically mutated and/or
ated HTT and the reference standard indicates that the subject to be diagnosed has a HTT
amyloidosis or is at risk to develop a HTT amyloidosis. Alternatively, or in addition as a second
control the control subject does not have a HTT amyloidosis, wherein a difference between the
level of physiological HTT and/or of mutated and/or aggregated HTT and the reference
standard tes that the subject to be diagnosed has a HTT dosis or is at risk to develop
a HTT amyloidosis. Preferably, the subject to be diagnosed and the l subject(s) are age-
matched. The sample to be analyzed may be any body fluid suspected to contain pathologically
mutated and/or aggregated HTT, for example a blood, blood plasma, blood serum, urine,
peritoneal fluid, saliva or cerebral spinal fluid (CSF). In another aspect ofthe present invention,
the antibodies of the present invention can be used in detection of soluble and aggregated HTT
utilizing e.g. a TR—FRET based duplex immunoassay as described in Baldo et (1]., Chem. Biol.
19(2) (2012), 264-275 which disclosure content, in particular the experimental procedures at
pages 273—274, are incorporated herein.
rmore, it has been described in e.g. Ren et al., Nature Cell Biol. 11 (2) (2009), 219-225
that mammalian cells can internalize fibrillar utamine e aggregates in culture
gaining access to the cytosolic compartment and become co-sequestered in aggresomes together
with components of the ubiquitin-proteasome system and cytoplasmic chaperones. These
internalized fibrillar aggregates were able to selectively recruit soluble cytoplasmic proteins
and to confer a ble phenotype upon cells expressing the homologous amyloidogenic
protein from a chromosomal locus. Therefore, in one embodiment of the present invention the
anti-HTT antibody can reduce ellular spreading or transneuronal propagation of "toxic"
HTT species, as shown by Pecho-Vriesling et al. Nat. Neurosci. (2014) doi:10.1038/nn.3761
for huntingtin or other proteins ed in neurodegeneration such as u-synuclein; see e.g. Guo
et al., Nat Med. 20(2) (2014), 130-138.
The level ofphysiological HTT and/or of pathologically mutated and/or aggregated HTT may
be assessed by any suitable method known in the art comprising, e.g, analyzing HTT by one
or more techniques chosen from n blot, immunoprecipitation, enzyme-linked
immunosorbent assay (ELISA), radioimrnunoassay (RIA), fluorescent activated cell sorting
(FACS), two-dimensional gel ophoresis, mass spectroscopy (MS), matrix-assisted laser
desorption/ionization—time of flight—MS (MALDl—TOF), surface—enhanced laser desorption
ionization-time of flight (SELDI-TOF), high performance liquid chromatography (HPLC), fast
n liquid chromatography (FPLC), multidimensional liquid chromatography (LC)
followed by tandem mass spectrometry (MS/MS), and laser densitometry. Preferably, said in
viva g of HTT comprises scintigraphy, positron emission aphy (PET), single
photon emission tomography (SPECT), near infrared (NIR) optical imaging or magnetic
resonance imaging (MRI).
In one embodiment thus, an dy of the present invention or a HTT-binding molecule
having substantially the same binding specificities of any one thereof, the polynucleotide, the
vector or the cell as defined above or a pharmaceutical or diagnostic composition
comprising any one thereof is ed for use in prophylactic treatment, therapeutic treatment,
and/or monitoring the progression or a se to treatment of a disease or disorder related to
HTT. In general thus, the present invention also relates to a method of diagnosing or monitoring
the progression of a disease or er related to HTT (such as HTT amyloidosis) in a subject,
the method comprising determining the ce of HTT in a sample from the t to be
sed with at least one antibody ofthe present invention or a HTT-binding molecule having
substantially the same binding specificities ofany one thereof, wherein the presence ted,
misfolded and/or ated HTT species or fragments thereof is indicative for the disease or
disorder. In one embodiment said method of diagnosing or monitoring the progression of HTT
amyloidosis in a subject is provided, the method comprising determining the presence of
mutated and/or aggregated HTT and/or fragments thereof in a sample from the subject to be
diagnosed with at least one antibody ofthe present invention or a HTT-binding le having
substantially the same binding specificities of any one thereof, wherein the presence ofmutated
and/or aggregated HTT and/or fragment thereof is indicative of presymptomatic, prodromal or
clinical HTT dosis an se of the level ofHTT aggregates in comparison to the level
ofthe physiological HTT or in ison to a reference sample d from a healthy control
subject or a control sample from the same subject is indicative for progression of
presymptomatic, prodromal or established HTT amyloidosis. It would be appreciated by any
person skilled in the art that in one embodiment said method is used as well for the diagnosing
or monitoring the progression of any other e or er from the group of disorders
related to HTT as defined hereinabove.
As indicated above, the dies of the present invention, fragments thereof and molecules of
the same g specificity as the antibodies and fragments thereof may be used not only in
vitra but in viva as well, wherein besides diagnostic, eutic applications as well may be
pursued. In one ment thus, the present invention also relates to a HTT binding molecule
comprising at least one CDR of an antibody of the present invention for the preparation of a
composition for in viva detection of or targeting a therapeutic and/or diagnostic agent to HTT
in the human or animal body. Potential therapeutic and/or diagnostic agents may be chosen
from the nonexhaustive enumerations of the therapeutic agents useful in treatment HTT
amyloidosis and potential labels as indicated hereinbefore. In respect of the in viva imaging, in
one preferred embodiment the present invention provides said HTT binding molecule
comprising at least one CDR of an antibody of the present invention, wherein said in viva
imaging comprises scintigraphy, positron emission tomography (PET), single photon emission
tomography (SPECT), near ed MIR) optical imaging or magnetic resonance imaging
(MRI). In a further embodiment the present invention also provides said HTT-binding molecule
comprising at least one CDR of an antibody of the present invention, or said molecule for the
preparation of a composition for the above specified in viva imaging methods, for the use in the
method of diagnosing or monitoring the progression of a disease or disorder related to HTT in
a subject, as defined hereinabove.
VII. es with aggregation specific HTT epitopes
In a further aspect the present ion relates to peptides having an epitope of a polyP-rich
region of HTT specifically recognized by any antibody of the present invention. Preferably,
such e comprises or consists of an amino acid sequence as indicated in SEQ ID Nos.:
146, 147, 148, 149, 150, 152, 153, 155, 156, 139, 151, 154, 158, 161, 157, 159, 160 as the
unique linear epitope recognized by the antibody or a modified sequence thereof in which one
or more amino acids are substituted, deleted and/or added, wherein the peptide is recognized
by any antibody of the present invention, preferably by antibody NI-302.74C1 1, NI-302.15F9,
NI-302.39G12, NI-302.11A4, .22H9, NI-302.37C12, NI-302.55D8, .78H12, NI-
302.71F6, NI-302.33C11, NI-302.44D7, NI-302.7A8, NI-302.3D8, NI-302.46C9, NI-
H6, NI-302.18A1, NI-302.52C9, and/or NI-302.8F1.
In an additional aspect the t invention relates to peptides having an epitope of the P-rich—
region of HTT specifically recognized by any antibody of the t invention. Preferably,
such peptide comprises or consists of an amino acid sequence as indicated in SEQ ID Nos. 140,
141, 142, 143, 200 as the unique linear epitope recognized by the antibody or a modified
sequence thereof in which one or more amino acids are tuted, deleted and/or added,
n the peptide is recognized by any antibody of the present invention, preferably by
antibody NI-302.63F3, NI-302.31Fl 1, NI-302.2A2, NI302.15D3 and/or .64E5.
Furthermore, in one embodiment the present invention relates to peptides having an epitope of
the C-terminal region of HTT specifically recognized by any antibody of the present invention.
Preferably, such peptide comprises or consists of an amino acid sequence as ted in SEQ
ID NO: 145 or SEQ ID NO: 202 as the unique linear epitope recognized by the antibody or a
modified sequence f in which one or more amino acids are substituted, deleted and/or
added, wherein the peptide is recognized by any antibody of the present invention, preferably
by antibody NI-302.35C1 or NI-302.72F10.
In an additional aspect the present invention relates to peptides having an epitope of the N-
terminal—region of HTT specifically recognized by any antibody of the present ion.
Preferably, such peptide comprises or consists of an amino acid sequence as indicated in SEQ
ID NOs: 144 as the unique linear epitope recognized by the antibody or a modified ce
thereof in which one or more amino acids are substituted, deleted and/or added, n the
peptide is recognized by any antibody of the present invention, preferably by antibody NI-
302.15E8.
Furthermore, in one embodiment the present invention s to peptides having an epitope of
the Q/P-rich—region of HTT specifically recognized by any antibody of the present invention.
Preferably, such peptide comprises or consists of an amino acid sequence as indicated in SEQ
ID NO: 201 as the unique linear epitope recognized by the antibody or a modified sequence
thereof in which one or more amino acids are substituted, deleted and/or added, wherein the
peptide is recognized by any antibody of the present invention, preferably by dy NI-
302.7D8.
In addition, in one ment the present invention s to peptides having an e of
HTT specifically recognized by any antibody ofthe present ion, preferably by antibody
NI-302.6N9, NI-302.12H2, NI-302.8Ml and/or NI—302.4A6 in which one or more amino acids
are substituted, deleted and/or added, n the peptide is recognized by any antibody of the
present invention.
In one embodiment of this invention such a peptide may be used for diagnosing or monitoring
a e or disorder d to mutated, misfolded and/or aggregated HTT species and/or
fragments thereof in a subject, such as HD and/or HTT amyloidosis comprising a step of
determining the presence of an antibody that binds to a peptide in a biological sample of said
subject, and being used for diagnosis of such a disease in said subject by measuring the levels
of antibodies which recognize the above described peptide of the present invention and
comparing the measurements to the levels which are found in y subjects of comparable
age and gender. Thus in one embodiment the present invention s to a method for
diagnosing HTT amyloidosis tive of presymptomatic or clinical HD in a subject,
comprising a step of ining the presence of an antibody that binds to a peptide as defined
above in a biological sample of said subject. According to this method, an elevated level of
measured antibodies specific for said peptide of the present invention is indicative for
diagnosing in said subject presymptomatic or clinical HD or for diagnosing in said subject any
other disease or disorder from the group of disorders related to HTT as defined hereinabove.
The peptide of the present invention may be ated in an array, a kit and composition,
respectively, as described hereinbefore. In this context, the present invention also relates to a
kit usefiil in the diagnosis or monitoring the progression ofHD and/or HTT amyloidosis, said
kit comprising at least one antibody ofthe present invention or a HTT-binding le having
substantially the same binding specificities of any one thereof, the polynucleotide, the vector
or the cell and/or the peptide as respectively defined hereinbefore, optionally with ts
and/or ctions for use.
The above disclosure generally describes the present invention. Unless otherwise , a term
as used herein is given the definition as provided in the Oxford Dictionary of Biochemistry and
Molecular Biology, Oxford University Press, 1997, revised 2000 and reprinted 2003, ISBN 0
19 850673 2. Several documents are cited throughout the text of this cation. Full
bibliographic citations may be found at the end of the specification immediately preceding the
claims. The contents of all cited references (including literature references, issued patents,
published patent applications as cited throughout this application including the background
section and manufacturer's specifications, instructions, etc.) are hereby expressly incorporated
by reference; r, there is no admission that any nt cited is indeed prior art as to
the present invention.
A more complete understanding can be obtained by reference to the following specific
es which are provided herein for purposes of illustration only and are not intended to
limit the scope of the ion.
EXAMPLES
Example 1: Isolation and fication of anti-HTT antibodies
Human-derived antibodies targeting HTT and/or mutated and/or ated HTT species
and/or fragments thereof were identified utilizing the method described in the international
application the disclosure content of which is incorporated herein by
reference, with modifications. In particular, wild-type and mutant HTT proteins obtained by
recombinant expression were used in both native and mutated-aggregated conformations for
the identification of rgeting antibodies. The mutated-aggregated conformations were
produced in vitro, using a procedure similar to the one described in Example 3.
Example 2: Determination of antibody sequence
The amino acid sequences of the variable regions of the above identified anti-HTT antibodies
were determined on the basis of their mRNA sequences, see Fig. 1. In brief, living B cells of
selected non-immortalized memory B cell cultures were harvested. Subsequently, the mRNAs
from cells producing selected anti-HTT antibodies were extracted and converted in cDNA, and
the sequences encoding the dy's variable regions were amplified by PCR, cloned into
plasmid vectors and sequenced.
In brief, a combination of primers representing all sequence families of the human
immunoglobulin germline repertoire was used for the amplifications of leader peptides, V-
ts and J-segments. The first round of amplification was performed using leader e-
specific primers in 5'-end and constant region-specific primers in 3'-end (Smith et al., Nat
Protoc. 4 (2009), 372-384). For heavy chains and kappa light chains, the second round of
amplification was performed using V-segment-specific s at the 5'—end and J-segment-
specific primers at the 3'-end. For lambda light chains, the second round amplification was
performed using V—segment-specific primers at the 5'-end and a C-region—specific primer at the
3'-end (Marks et al., Mol. Biol. 222 (1991), 581-597; de Haard et al., J. Biol. Chem. 26 (1999),
18218-18230).
Identification of the antibody clone with the desired specificity was med by re-screening
on ELISA upon recombinant expression of complete antibodies. Recombinant expression of
complete human IgG1 antibodies was achieved upon insertion of the variable heavy and light
chain sequences "in the correct g frame" into expression vectors that complement the
le region sequence with a ce encoding a leader e at the 5'-end and at the 3'-
end with a sequence ng the appropriate constant domain(s). To that end the primers
contained ction sites designed to facilitate cloning of the variable heavy and light chain
sequences into antibody expression vectors. Heavy chain immunoglobulins were sed by
ing the immunoglobulin heavy chain RT-PCR product in frame into a heavy chain
expression vector bearing a signal peptide and the constant domains of human or mouse
immunoglobulin gamma 1. Kappa light chain immunoglobulins were expressed by inserting
the kappa light chain RT-PCR—product in frame into a light chain expression vector providing
a signal peptide and the constant domain n kappa light chain immunoglobulin. Lambda
light chain immunoglobulins were expressed by inserting the lambda light chain RT-PCR-
product in frame into a lambda light chain expression vector providing a signal peptide and the
constant domain of human or mouse lambda light chain immunoglobulin.
Functional recombinant monoclonal antibodies were obtained upon co-transfection into HEK
293 or CHO cells (or any other appropriate recipient cell line of human or mouse origin) of an
vy-chain expression vector and a kappa or lambda Ig-light-chain expression vector.
Recombinant human monoclonal antibody was subsequently purified from the conditioned
medium using a standard Protein A column ation. Recombinant human monoclonal
antibody can ed in unlimited quantities using either transiently or stably transfected cells.
Cell lines producing recombinant human monoclonal dy can be ished either by
using the Ig—expression vectors directly or by re-cloning of Ig-Variable regions into different
expression vectors. Derivatives such as F(ab), F(ab)2 and scFv can also be generated from these
Ig-variable regions. The framework and complementarity determining regions were determined
by comparison with reference antibody sequences available in databases such as Abysis
(https://www.bioinf.org.uk/abysis/) and /www.imgt.org/, and annotated using the Kabat
numbering scheme (https://www.bioinf.org.uk/abs/).
Example 3: Expression of HTT exon 1 proteins
Methods
Recombinant huntingtin exonl proteins tExon1Q21 (GST—HD21), GST-HttExon1Q35
(GSTHD35), and GST-HttExon1Q49 (GST-HD49) expression and purification pGEX—6P-1
expression vector (GE Healthcare) encoding Exonl of human huntingtin with polyQ length of
21, 35 or 49 CAG repeats, respectively (compare Fig. 2A) fiased with a PreScission cleavage
site to an N-terminal Glutathione S-transferases tag were expressed in E. coli strain
BL21. Overnight bacterial cultures (37°C, ) were diluted 1:25 and expression was
induced at an Absorption 600 of 0.5-0.6 for 4 hrs by addition of 1 mM 1PTG (Sigma 11284)
and r incubation at 36°C, 220 rpm. Cultures were grown in LB medium ning 100
ug/ml ampicillin at 37°C, for overnight es in addition with 1% glucose. inant
GST—HttExonl proteins were purified by binding to glutathione agarose (Sigma G4510).
Briefly, the bacteria pellet was resuspended in 20-40ml of cold buffer 1 (50mM NaH2PO4,
mM Tris, 150 mM NaCl, 1 mM EDTA pH8, 5mg/ml final lysozyme, protease inhibitor
complete (Roche)) were incubated for 60 min on ice, ultrasonicated, Triton-X100 added (0.1%
final) and centrifuged for 90 min at 14’000g after incubation on ice for 5 min. Glutathione
agarose was added to the supernatant, incubated for 2 hrs at 4°C, spun down for 10 min at 1000g
and washed 2x with cold PBS after removal ofthe supernatant. Elution was performed for 5 min
in 1 ml buffer 1 with 10mM reduced glutathione pH 9. This step was ed 5 to 15 times
until no further protein was eluted. The pooled supematants were dialyzed against buffer
(50mM tris pH7.4, 150 mM NaCl, 1 mM EDTA, 1% glycerol) over night (10 kD MWCO,
Pierce) and aliquots were stored at —80°C.
SDS-PAGE analysis
Purified inant GST-HttExl proteins were resolved by gradient SDS—PAGE (NuPAGE
Bis-Tris 4-12%; ogen, Basel, Switzerland) followed by staining with Coomassie brilliant
blue or electroblotting on nitrocellulose membranes. Blots were incubated with y
antibodies Mab 5492 (Chemicon N—terminal aa1-82 epitope, P-rich domain) or NI-302.37C12
followed by a goat antimouse IgG secondary antibody conjugated with HRP or donkey anti-
human IgG secondary antibody conjugated with HRP. Blots were developed using ECL and
ImageQuant LAS 4000 detection (GE Healthcare, Switzerland).
As shown in Fig. 2B the different recombinant GST-HttExl proteins were successfully
expressed and purified as demonstrated by Coomassie staining after SDS-PAGE.
Example 4: Characterization of aggregation state by dot blot and filter ation
To characterize HD21, HD35 and HD49 protein aggregation kinetics filter retardation and dot-
blot analyses were performed.
Therefore, at the beginning an aggregation reaction was performed as follows: Recombinant
GST-HttExonl ns can be expressed and purified as a fiasion n. As soon as the GST
tag is cleaved off from the fusion protein by the PreScission Protease (PP) the aggregation
reaction of the huntingtin Exonl protein starts immediately. Before the start of reactions the
GST-HttExonl proteins were centrifuged at 0g for 30 minutes. The cleared protein
on were diluted to 2uM protein concentration in cold aggregation buffer (0.05 M
Tris/HCL pH 7, 0.15 M NaCl, 1 mM EDTA) and 1 mM DTT and PreScission Protease (GE
Healthcare) were added. The on was incubated at room temperature with rotating at
300rpm and the aggregation reactions were stopped by snap freezing at -80°C after the indicated
time intervals. Aliquots of HD21, HD35 and HD49 aggregation reactions were subsequently
d after 1, 3, 5, 7 and 24 hrs of incubation time, respectively, snap frozen on dry ice and
stored at -80°C.
For the dot blot analysis samples were thawed on ice, diluted and transferred onto a
nitrocellulose transfer membrane with a filter device applying vacuum in the chamber below
the membrane. To that end, the membrane was equilibrated with PBS, mounted in the chamber
and washed with 100ul PBS per well. The samples were loaded and completely sucked through
the ne followed by 3 washes with PBS. The device was dissembled and the ne
was briefly air-dried for 15 min at room temperature, blocked for 1 hour at room temperature
with blocking buffer (3% BSA, 0.1% Tween 20 in PBS buffer) and incubated with polyclonal
HD-l antibody (1 :10’000, kind gift of Prof. E. Wanker,MDC, Berlin). After washing, the
membrane was incubated for 1 h at RT with an anti-rabbit IgG antibody coupled to HRP and
blots were developed using ECL and ImageQuant LAS 4000 detection (GE Healthcare,
Switzerland).
As evident from the dot blot shown in Fig. 2C, left side, polyclonal HD—l antibody detected
HD21, HD35 and HD49 proteins irrespective of their aggregation state.
For filter retardation assays samples were thawed on ice, diluted in ration buffer (4%
SDS, 100 mM DTT) and transferred through a cellulose acetate membrane with a pore size of
0.2um using a vacuum chamber: To that end, the membrane was equilibrated in 0.1% SDS in
PBS, mounted on the vacuum chamber and the wells were washed with 0.1% SDS. The samples
were added, filtered h the membrane by vacuum and washed 3 times with 0.1% SDS.
The ne was then removed from the r, briefly air-dried, blocked for 1h at RT in
blocking buffer (5% milk, 0.1% Tween 20 in PBS ), incubated with polyclonal HD-l
antibody (1:5’000, Scherzinger et al., Cell 90 (1997), 549—558) and processed further as
described above.
In the filter retardation assay, the first aggregates retained by the membrane were detected for
HD35 after 24 hours of incubation. HD49 proteins with an ed polyQ tract form insoluble
aggregated as early as 3 hrs after cleavage of the GST tag, see Fig. 2C right side (FRA).
Example 5: Characterization of Huntingtin Exonl aggregates
To verify and characterize HD35 and HD49 Exonl aggregate formation electron microscopy
(EM) was performed. In brief, HD49 aggregation reactions after 1, 3 and 24 hrs, respectively
or samples from HD35 afier 24 hrs were ed by electron microscopy. Samples were
adsorbed onto ischarged carboncoated copper grids. Excess sample was removed by
blotting on filter paper. Grids were stained with 2% (w/V) uranyl acetate for l min and excess
uranyl acetate was washed with distilled deionized water. Grids were air-dried and imaged
using a Philips CMIOO ission electron microscope with an acceleration voltage of 100
EM analysis of the HD35 aggregation reaction revealed larger aggregates visible by EM
resembling protofibrillar structures after 24 hrs of tion (Fig. 2D [E]). HD49 displayed a
more rapid aggregation kinetics with fibrils being detectable already after 1 hour of incubation
(Fig. 2D [F]) and increasing in size and number with aggregation time (Fig. 2D [C, D, G, H]).
These observations were consistent with the results obtained in the filter retardation assays
where ates larger than 0.2um are retained on the ose acetate membrane and confirm
the successfiil preparation of huntintingtin exon 1 ates; see also Example 4.
Example 6: g affinity of anti-polyP domain NI—302.33C11 antibody utilizing
direct ELISA and EC50
To determine the half maximal ive concentration (EC50) of recombinant derived
HTT antibody .33C11 to soluble and aggregated huntingtin Exonl proteins with 21 or
49 polyQ repeats direct ELISA was performed. In brief, 96 well microplates (Corning) were
coated with either GST-HD21, GST-HD49 or aggregated HD21 or HD49 at a concentration of
5 ug/ml in coating buffer (15 mM Na2CO3, 35 mM NaHCO3, pH 9.42). Nonspecific binding
sites were blocked for 1 h at RT with PBS/0.1% Tween®-20 containing 2% BSA (Sigma-
Aldrich, Buchs, Switzerland). Primary antibodies were diluted to the indicated concentrations
and incubated 1 h at RT. Binding was determined using either a donkey anti-human IgG Fcy-
specific antibody conjugated with HRP or a goat anti-mouse IgG specific antibody
conjugated with HRP, followed by ement of HRP activity in a rd colorimetric
assay. Subsequently, EC50 values were estimated by a non-linear regression using GraphPad
Prism software (San Diego, USA).
The EC50 ofhuman-derived HTT antibody NI-302.33C1 1 for aggregated and soluble HTT exon
1 proteins with 21 or 49 poly Q repeats was determined by direct ELISA with coating of the
different preparations at 5 ug/ml concentration. As shown in Fig. 3A and B antibody
NI-302.33C11 bound with similar high affinity to all four species ing the pathologically
aggregated HTT Exonl HD49 with an EC50 of approximately 100 pM.
Example 7: Binding selectivity of anti-HTT antibodies utilizing dot blot and filter
retardation assay
To characterize recombinant human-derived HTT antibody NI—302.33C11 to soluble and
ated huntingtin Exonl proteins with 21, 35 or 49 polyQ repeats filter retardation assay
and dot-blot were performed. For this reason, aliquots of HD21, HD35 and HD49 aggregation
reactions as described in Example 4 were removed afier 1, 3, 5, 7 and 24 hrs of incubation time,
snap frozen on dry ice and stored at -80°C and a dot blot was performed as described in Example
4. Filter retardation assay was also performed as described in Example 4, with the exception
that the ne was incubated with NI-302.33Cll (l ug/ml).
It could be shown that on the dot blot (Fig. 3C, left side), antibody NI-302.33C11 preferentially
detects proteins of huntingtin with expanded polyQ tracts (HD49>>HD35>HD21).
Furthermore, the signal intensity increased with increasing incubation times of the aggregation
reactions ofHD35 and HD49.
This is also true for the results shown in the filter retardation is (Fig. 3C, right side),
which showed that NI-302.33C11 detects HD35 and HD49 aggregates that were retained on
the 0.2 mm pore size membrane. These findings based on spotted protein preparations suggested
that antibody NI—302.33C11 has a preference for aggregated HTT conformations with
pathogenic polyQ expansions.
Example 8: Binding specificity and selectivity of anti-HTT dies to unrelated
aggregating protein targets utilizing direct ELISA
To determine the g specificity antibody NI-302.33C11 recombinant antibody binding to
the polyP-region of HTT and not to unrelated aggregating protein targets direct ELISA was
performed on 96 well microplates (Corning) coated with different target proteins at a
concentration of 1-10 ug/ml in coating buffer (15 mM , 35 mM NaHCOg, pH 9.42).
Non-specific binding sites were blocked for 1 h at RT with PBS/0.1% Tween®-20 containing
2% BSA (Sigma-Aldrich, Buchs, rland). .33Cll antibody was diluted to the
indicated concentrations and ted l h at RT. Binding was determined using donkey anti-
human IgG Fcy-specific dy conjugated with HRP followed by ement of HRP
activity in a standard metric assay. Signals for target protein were calculated in fold
increase above median.
It could be shown that human-derived NI-302.33C11 binds specifically to HTT, z'. e. aggregated
HD49, with absent binding to the other unrelated protein targets including prominent amyloid-
forming proteins, see Fig. 16A.
Example 9: Assessment of the binding epitope of the HTT antibody .33C11
To map the huntingtin (HTT) epitope recognized by the NI-302.33Cl l derived antibody
epitope mapping by peptide scanning is with synthetic peptides was performed.
In brief, scans of overlapping peptides were used for epitope mapping. The sequence of human
HTT Exon 1 sequence was synthesized as a total of 16 linear lS-meric peptides with 10 aa
overlap between individual peptides (JPT e logies, Berlin, Germany) and d
onto nitrocellulose membranes. The membrane was activated for 5 min in methanol and then
washed at RT in TBS for 10 min. Non-specific binding sites were blocked for 2 hours at room
temperature with Roti®-Block (Carl Roth GmbH+Co. KG, Karlsruhe, Germany). Human NI-
302.33Cll antibody (1 ug/ml) was incubated for 3 hrs at RT in Roti®-Block. Binding of
primary antibody was determined using HRP conjugated donkey-anti human IgGy secondary
antibody. Blots were developed using ECL and ImageQuant LAS 4000 detection (GE
Healthcare, Switzerland).
As shown in Fig. 4, ent binding of .33Cll was observed to peptides number 7,
8, 9, l3 and 14 indicating that the e recognized by this antibody is localized in the polyP
repeat domain of huntingtin. The NI-302.33Cll binding epitope is therefore predicted to be
localized within HTT amino acids 35-PPPPPPPP-42 (SEQ ID No.: 139) and amino acids 63-
PPPPP-72 (SEQ ID No.: 162).
Example 10: Epitope mapping by direct ELISA binding to different Exonl peptides of
the HTT antibody NI—302.33C11
To determine the half maximal effective concentration (ECso) of recombinant human-derived
HTT antibody .33Cll to BSA-coupled peptide fragments ofthe gtin Exon 1 direct
ELISA with BSA-coupled Htt Exonl domain peptides was performed.
In brief, 96 well microplates (Corning) were coated with BSA-coupled synthetic peptides
(Schafer-N, k) of the N—terminal amino acid l-l9 (MATLEKLMKAFESLKSFQQ,
SEQ ID No.: 93), the P-rich domain sequence (PPQLPQPPPQAQPLLPQPQPP, SEQ ID No.:
94), the polyP repeat sequence (PPPPPPPPPPP, SEQ ID No.: 95) or the 14 C—terminal amino
acids VAEEPLHRP, SEQ ID No.2 96) or with the full lengths GST-HD49 Exon 1
protein at Sug/ml in coating buffer (15 mM Na2C03, 35 mM NaHCO3, pH 9.42). Non-specific
binding sites were blocked for 1 h at RT with PBS/0.1% Tween®-20 containing 2% BSA
(Sigma-Aldrich, Buchs, rland). Primary dies were diluted to the indicated
concentrations and incubated l h at RT. Binding was determined using donkey anti-human IgG
ecific antibody ated with HRP, followed by measurement of HRP activity in a
standard colorimetric assay and the ECso values were estimated by a non-linear regression using
GraphPad Prism software (San Diego, USA).
As shown in Fig. 5 NI-302.33C11 bound with high affinity to the BSA-coupled polyP peptide
as well as to fiJll-length GST-HD49 with an equivalent ECso of 30 pM. This confirms the
epitope mapping to the polyP sequence as shown in Example 9.
Example 11: Assessment of the purity and integrity of recombinant human NI-
302.33C11 anti-polyP domain antibody
To assess the purity and ity ofrecombinant human NI-302.33C11 olyP domain lead
antibody human NI-302.33C11 anti-polyP domain antibody was expressed by transient
transfection of CHO-S cells and purified by protein A affinity purification on an Akta system.
After PD-10 column desalting the antibody was formulated in PBS. Subsequently SDS-PAGE
analysis was performed, wherein two and 10 ug ofpurified recombinant human NI—302.33C1 l
anti—polyP domain antibody were resolved under reducing conditions by gradient SDS-PAGE
(NuPAGE 4—12% Bis-Tris gel; Invitrogen) followed by Coomassie staining (SimplyBlue
SafeStain, Invitrogen).
The GE analysis under reducing conditions of the recombinant human NI-302 anti-
polyP domain lead dy revealed two major bands corresponding to the antibody heavy and
light chains at the expected size as shown in Fig. 6, while no significant inations or
proteolytic degradation products were detected.
Example 12: terization of HTT antibody NI—302.33C11 in human HTT
transgenic mice
To assess the binding of NI-302.33C11 antibody to huntingtin pathology in human HTT
transgenic mouse brain tissues immunohistochemistry was performed. The B6.Cg-
xon1)61pr/J transgenic mouse line (Mangiarini et al., Cell 87 (1996), 493-506) is a
well terized mouse model for Huntington's Disease (HD). Starting at around 9 weeks of
age, this animal model develops a progressive pathology characterized by intranuclear
inclusions of huntingtin reminiscent of human Huntington's disease (Naver et al., Neuroscience
122 (2003), 1049-1057). Hemibrains of these B6.Cg-Tg(HDexon1)61pr/J transgenic mice at
a progressed stage of disease (270 days) were fixed in phosphate-buffered 4%
paraformaldehyde solution, paraffin—embedded, and S-um sections were prepared. After formic
acid and citrate buffer pretreatment, sections were ted with 1, 5 or 50 nM human NI-
302.33C1l anti-HTT antibody followed by incubation with biotinylated —anti—human
secondary antibody (Jackson Immunoresearch; 1:250). Antibody signal was amplified with the
Vectastain ABC kit (Vector Laboratories) and detected with diaminobenzidine (Pierce).
As shown in Fig. 27 human-derived polyP domain antibody NI-302.33C11 revealed a very
prominent staining of neuronal intranuclear inclusion pathology already at the lowest 1 nM
concentration (Fig. 27 [E-H]) consistent with the high affinity binding to gtin aggregates
as determined by ELISA and dot blot analyses. At a concentration of 5 nM or higher, the
antibody stained in addition entire medium spiny neurons and produced a more generalized
diffuse staining which was also detectable on nontransgenic brain sections. A certain degree of
cross-reactivity cannot be excluded as the polyp epitope targeted by NI-302.33C11 was present
also in numerous unrelated proteins (Fig. 27 .
e 13: Characterization of binding affinity and selectivity of anti-P-rich domain
.63F3 antibody utilizing direct ELISA and ECso
To determine the half maximal ive concentration (ECso) of recombinant human-derived
HTT dy NI-302.63F3 to soluble and aggregated HTT Exonl proteins with 21 or 49 polyQ
repeats direct ELISA and EC50 ination was performed as described in Example 6, supra.
It could be shown that NI-302.63F3 binds with similar high affinity to all four species ing
the aggregated HTT Exonl HD49 with an EC50 of approximately 200 to 400 pM Fig. 7 A and
B. Accordingly, the human-derived HTT anti-P-rich domain antibody NI-302.63F3 s an
epitope d in aggregated as well as in an uncut, more linear structure of HTT Exonl
n with high-affinity in the subnanomolar range.
Additionally, to characterize the g of recombinant human-derived HTT antibody NI-
302.63F3 to soluble and aggregated HTT Exonl proteins with 21, 35 or 49 polyQ repeats using
filter ation assay and dot blot as described in Example 7, supra, with the small
modification that the incubation was performed with 1 ug/ml ofNI-302.63F3 antibody.
On the dot blot, antibody NI-302.63F3 most prominently detected the HD49 protein with an
expanded polyQ tract (Fig. 7C, left side). In the filter retardation analysis NI-302.63F3 detected
HD35 and HD49 aggregates that were retained on the 0.2 um pore size membrane (Fig. 7C,
right side). These findings based on spotted protein preparations demonstrate that antibody NI-
302.63F3 recognizes aggregated HTT conformations with pathogenic polyQ ions.
Furthermore, to ine the binding of NI-302.63F3 recombinant antibody to unrelated
aggregating n targets, direct ELISA was performed as described in Example 8, supra. As
shown in Fig. 16B human-derived NI-302.63F3 bound specifically to HTT while a g to
unrelated proteins could not be shown.
e 14: Assessment of the binding e of the HTT antibody NI—302.63F3
To map the huntingtin epitope ized by the NI-302.63F3 human-derived antibody epitope
mapping with synthetic peptides was performed as described above in Example 9.
As shown in Fig. 8, prominent binding of NI-302.63F3 was observed to peptides number 10
and 11 with a weak signal on peptide 8 and 9 indicating that the epitope recognized by this
antibody is localized in the P-rich domain (between the polyP repeat s) of HTT. The NI-
302.63F3 binding epitope was therefore predicted to be localized within HTT amino acid
sequence 43-(PPPQL)PQPPPQAQPL-57 (SEQ ID Nos.: 161 and 140).
Example 15: Epitope mapping by direct ELISA binding to different Exonl peptides of
the HTT antibody NI—302.63F3
To determine the half l effective concentration (EC5 0) of recombinant derived
HTT dy NI-302.63F3 to BSA—coupled peptide fragments of the huntingtin Exon 1 direct
ELISA with BSA-coupled Htt Exonl domain peptides and ECso determination were performed
as described in Example 10.
As shown in Fig. 9 NI-302.63F3 binds with high affinity to the BSA-coupled P-rich domain
peptide as well as to fiill-length GST—HD49 with a similar ECso of200 to 300 pM. This confirms
the epitope mapping to the P-rich domain sequence as shown in Example 14.
Example 16: ment of the purity and integrity of recombinant human NI-302.63F3
anti-P-rich domain antibody
To assess the purity and integrity of recombinant human NI-302.63F3 anti-proline-rich domain
antibody SDS-PAGE analysis was med as y described in Example 11, supra.
SDS—PAGE analysis under reducing conditions of the recombinant human NI-302.63F3 anti-
P-rich domain antibody revealed two major bands corresponding to the antibody heavy and
light chains at the expected size. No significant contaminations or proteolytic degradation
ts were detected as shown in Fig. 10.
Example 17: terization of HTT dy NI—302.63F3 in human HTT transgenic
mice
The assessment of the binding of NI—302.63F3 anti—P-rich domain antibody to HTT pathology
in human HTT transgenic mouse brain tissues was assessed as described in Example 12, supra
with the difference that the incubation of the sections was med with l or 50 nM of the
anti-P-rich domain antibody.
As shown in Fig. 28 [E-F] the derived NI-302.63F3 anti-P-rich domain antibody
revealed a prominent and highly specific staining of neuronal intranuclear inclusion pathology
at l and 50 nM concentration in the striatum and cortex ofR6/ 1 transgenic animals consistent
with the high affinity binding to HTT aggregates as determined by ELISA and dot blot analysis.
However as shown in Fig. 28 [F] at a concentration of 50 nM the antibody NI-302.63F3 d
additionally weakly the entire nucleus of the medium spiny neurons.
Example 18: Characterization of binding y and selectivity of anti-C-terminal
domain antibodies NI—302.35C1 and NI-302.72F10 utilizing direct ELISA
and ECso
To determine the half maximal effective concentration (ECso) of recombinant human-derived
HTT antibodies NI—302.35Cl and NI-302.72F10 to soluble and aggregated HTT Exonl
proteins with 21 or 49 polyQ s direct ELISA and ECSO determination was performed as
described in Example 6, supra.
It could be shown that NI—302.35C1 binds with high affinity to all four species including the
aggregated HTT Exonl HD49 with an ECso of approximately 2.7 nM; see Fig. 11 A and B.
Similarly, NI-302.72F10 binds to all four species albeit with a different affinity than NI-
302.35C1 (aggregated HD21>>GST-HD21>>aggregated HD49>>GST-HD49) (Fig. 31 C)
which may be explained with the different epitopes recognized by both antibodies (Fig. 20).
Accordingly, the human-derived HTT anti—C-terminal domain dies NI-302.35C1 and N1-
302.72F10 target an epitope exposed in ated as well as in soluble forms ofHTT with low
nanomolar affinity.
Additionally, to characterize the binding of recombinant human-derived HTT antibodies NI-
302.35C1 and NI—302.72F10 to soluble and aggregated HTT Exonl proteins with 21, 35 or 49
polyQ repeats filter retardation assay and dot blot as described in Example 7, supra, was
performed.
On the dot blot, antibody NI-302.35C1 entially detected constructs ofHTT with expanded
polyQ tracts (HD49>HD35>>HD21, Fig. 11C, left side). Furthermore, the signal intensity
increases with sing incubation times of the aggregation reactions of HD35 and HD49.
Similarly, antibody NI-302.72F10 detected constructs of HTT with expanded polyQ tracts
albeit with a ent preference (HD35>>HD49>HD21) whereas the signal intensity increases
with increasing incubation times of the aggregation reactions of HD35 only (Fig. 32 C).
In the filter retardation analysis NI—302.35C1 ed HD35 and HD49 aggregates that were
retained on the 0.2 um pore size membrane (Fig. 11 C, right side) whereas NI—302.72F10
detected HD35 ates only (Fig. 32 C, right side). These findings based on ne
bound protein preparations suggested that antibodies NI-302.35C1 and NI-302.72F10
preferentially targets aggregated HTT conformations with pathogenic polyQ expansions.
Furthermore, to ine the binding of NI-302.35Cl and NI-302.72F10 recombinant
dies to unrelated aggregating protein targets, direct ELISA was performed as described
in Example 8, supra. As shown in Fig. 16 C human—derived .35C1 as well as shown in
Fig. 33 C human-derived NI-302.72F10 bound specifically to HTT while a binding to unrelated
proteins could not be shown.
Example 19: Assessment of the binding epitope of the HTT antibody NI-302.35C1
To map the huntingtin epitope recognized by the NI—302.35Cl human-derived antibody epitope
mapping with synthetic peptides was performed as described above in Example 9.
Determination of NI-302.35Cl antibody binding epitope by scan of pping peptides did
not result in specific signal. ore, processing this antibody in the way it was done for the
other HTT NI-302 antibodies did not results in any specific signal on the individual peptides
for unknown reasons. The epitope was successfully mapped to a C-terminal peptide by coupling
it to BSA, see also Example 20.
Example 20: Epitope mapping by direct ELISA binding to different Exonl peptides of
the C-terminal domain HTT dy NI—302.35C1
To determine the half maximal effective concentration (ECso) of recombinant human-derived
HTT antibody NI-302.35Cl to BSA-coupled peptide fragments of the HTT Exon 1 direct
ELISA with upled Htt Exonl domain peptides and ECso determination were performed
as described in Example 10.
As shown in Fig. 12 NI-302.35Cl binds with high affinity to the BSA—coupled C-terminal
e as well as to full-length 49 with an ECso value of approximately 0.7 nM and
3.2 nM, tively. This locates the epitope to the inal region ofHTT Exonl sequence
(71- PPGPAVAEEPLHRP-SS, SEQ ID No: 96). If the same C-terminal peptide was coated
directly to the plate only weak binding was observed (ECso >100nM, data not shown)
ting that the presentation of the peptide coupled to BSA increases the binding to the
epitope and might be an explanation why the epitope mapping by peptide scanning analysis as
shown in Example 20 did not work.
Example 21: Assessment of the purity and integrity of recombinant human NI—302.35C1
anti-P-rich domain antibody
To assess the purity and integrity ofrecombinant human NI—302.35Cl anti—C-terminal domain
antibody SDS-PAGE analysis was med as already described in Example 11, supra.
SDS-PAGE analysis under reducing conditions of the inant human .35Cl anti-
inal domain antibody revealed two major bands corresponding to the antibody heavy
and light chains at the expected size, while no significant contaminations or proteolytic
degradation products were detected (Fig. 13).
Example 22: Characterization of HTT antibody NI—302.35C1 in human HTT transgenic
mice
The assessment of the binding of NI-302.35C1 -terminal domain antibody to HTT
pathology in human HTT transgenic mouse brain tissues was assessed as described in Example
12, supra with the difference that the incubation of the sections was performed with 5 or 50 nM
ofthe -terminal domain antibody.
As shown in Fig. 29 [E-F] the human-derived NI-302.35C1 anti-C-terminal domain dy
revealed a prominent staining of neuronal intranuclear inclusion pathology at 5 and 50 nM
concentration in striatum of R6/1 transgenic animals consistent with the high affinity binding
to HTT aggregates as determined by ELISA and dot-blot analyses.
Example 23: Assessment of the effects of human-derived antibodies targeting HTT 0n
spine density in hippocampal slice cultures
Antibody Expression and Purification
Human-derived antibodies targeting distinct domains in HTT exon 1 were expressed by
transient transfection ofCHO-S cells and purified by protein A affinity purification on the Akta
system. After PD-10 column desalting the antibodies were ated in PBS. Endotoxin levels
were confirmed to be <10 EU/ml.
Hippocampal slice culture
Organotypic hippocampal slice cultures were prepared and cultured according to Stoppini et
al., J Neurosci s. (1991) 173—82. In short, 6- to 8-d-old B6CBA-
xon1)62pr/1J transgenic and nontransgenic litterrnates were tated, brains were
removed, and both hippocampi were isolated and cut into 400-um thick slices. This method
yields thin slices which remain 1-4 cell layers thick and are characterized by a well preserved
organotypic organization. Slices were cultured on ell culture plate inserts (0.4 um,
ore) in six-well plates containing 1 ml of culture medium (46% minimum ial
medium Eagle with HEPES modification, 25% basal medium with Earle's modification, 25%
heat-inactivated horse serum, 2 mM glutamine, 0.6% glucose, pH 7.2). Culture plates were kept
at 37°C in a humidified atmosphere containing 5% C02. Slices were kept in culture for 7 d
before the experiments. Culture medium was exchanged every second or third day. On day 7
antibodies were added at a concentration of 10ug/ml. On day 10 in vitro slice cultures were
infected with Sindbis virus using a t method (Shahani et al., J Neurosci. 31 (2006), 6103—
6114). For spine analysis, cultures were fixed at day 4 post infection (14 days in Vitro). Slices
were left attached to the culture plate membrane to preserve hippocampal structure and rinsed
with PBS. Slices were then fixed with 4% paraformaldehyde in PBS containing 4% sucrose for
2 h at 4°C. For each dendrite a e was taken and spines were analyzed over a length of 30-
45 um. Eight to 13 slices per group from a total of 12 transgenic animals were quantified for
each antibody treatment. Data represent the mean i SEM. 5 (MWU), # p=0.05.
The fication of dendritic spine density in hipppocampal slice cultures of
Tg(HDexon1)62pr/1J transgenic mice (Fig. 17 B, D) ed a significant reduction by 53%
compared to non-transgenic littermates (Fig. 17 A, C, E) using hippocampal slices of postnatal
day 6 animals after 14 days in Vitro with the mental design described above. Upon
addition of human-derived NI-302 antibodies at concentration of 10 ug/ml for seven days a
significant attenuation of spine density loss was observed for antibodies .31F11 (Fig. 17
F, p < 0.05, ) and NI-302.63F3 (p=0.05, t-test), whereas antibody NI—302.33C11 and NI-
302.35C1 did not show a clear effect under the conditions tested.
The significant reduction of spine density ed to non-transgenic littermate in yed
in ampal slice cultures of Tg(HDexon1)62pr/1J transgenic mice led to the suggestion
that this is a suitable model for in Vitro testing of HTT candidate antibodies for their activity
towards interference with HTT toxicity. In this model, antibodies NI-302.63F3 and NI-
302.11F11 that both targeted the P-rich domain within HTT exon 1 were able to improved spine
density compared to an isotype control antibody. This suggests that these antibodies can
attenuate the toxic effects on spine density driven by sion of pathological poly-Q-
expanded HTT.
Example 24: Penetration of NI-302 antibodies in the brain of R6/1 animal model
To test the penetration of the anti-HTT antibodies of the present invention a transgenic mice
model was utilized. In ular, Tg(HDexon1)61pr/J transgenic mice harbor a 1.9 kb
transgene which was isolated from a phage genomic clone derived from an Huntington's disease
(HD) patient and contained the 5' end of the human huntingtin (HTT) gene. It was composed
of imately 1 kb of 5' UTR sequences, exon 1 (carrying expanded CAG repeats of ~130
units) and the first 262 bp of intron 1. This construct was microinjected into single cell
7BL/6 embryos. Male founder R6 was bred to CBAxC57BL/6 females, ing
several founder lines. Mice from founder line R6/1 have the transgene integrated as a single
intact copy which is tously expressed. Transgenic mice on a mixed CBAxC57BL/6
genetic background were backcrossed to C57BL/6J for more than 12 to generate the congenic
strain B6 .Cg—Tg(HDexon 1 )6 l pr/J .
R6/1 transgenic mice exhibit a progressive neurological phenotype that mimics many of the
features of HD, including choreiform—like movements, involuntary stereotypic movements,
tremor, and epileptic seizures, as well as nonmovement disorder ents, including unusual
vocalization. They urinate frequently and t loss of body weight and muscle bulk through
the course of the e. Neurologically they develop neuronal uclear inclusions (N11)
which contain both the HTT and ubiquitin proteins. These N11 have also been identified in
human HD patients. The age of onset ofHD symptoms is reported to occur between 15 and 21
weeks for this 6/1 line.
The study animals displayed the following properties and were identified by classical ear
marking:
Strain: Hemizygous B6.Cg-Tg(HDexon1)61pr/J (Mangiarini et (11., Cell, 87 (1996), 6)
Source: Jackson Laboratory, Maine, USA
Sex: Males and females
Age start: 230 to 260 days
Cohorts: .31F11 Total: 3 males
NI-302.35C1 Total: 3 males
Vehicle Total: 3 males
For the spinal cord homogenization B6.Cg-Tg(HDexon1)61pr/J transgenic mice were deeply
anesthetized and transcardially perfilsed with cold phosphate-buffered saline through the left
ventricle by mean of a peristaltic pump. The brain was dissected out and snap frozen on dry ice.
The tissue samples were homogenized in 1:10 w/v DEA-Buffer (SOmM NaCl, 0.2% DEA,
protease inhibitor complete, Roche Diagnostics) with a hand-sonicator (Sartorius, Labsonic M).
Samples were centrifuged for 30 minutes at 100’000 x g at 4°C and aliquots of the atant
were stored at -80°C before analysis.
In the following human IgG drug level sandwich ELISA the human NI-302.35C1, NI-
302.11F11 antibody plasma levels were determined using the corresponding recombinant
antibody ofknown concentration as rd. 96 well microplates (Corning) were coated with
donkey anti human IgG (709 149, Jackson Irnrnunoresearch) at lug/m1 in 50mM carbonate
coating buffer pH 9.6. Non-specific binding sites were blocked for 1 hr at RT with PBS/0. 1%
Tween®-20 containing 2% BSA (Sigma, Buchs, Switzerland). Plasma samples were diluted
1:20’000 and 1:100’000, brain homogenates were diluted 1:5 and 1:50 and both were incubated
1 hr at RT together with the standard dilution curves. Binding was determined using the
detection antibody anti human HRP (709—036-098, n Immunoresearch), followed by
measurement of HRP activity in a standard colorimetric assay. Concentrations of plasma and
spinal cord s were calculated based on the individual standard curve. Values shown in
table 6-1 are average values of 2 independent ELISA experiments.
Plasma and brain samples were obtained 2 days after a single intraperitoneal injection of
50 mg/kg of antibodies NI-302.31F11, NI-302.35C1 in R6/1 transgenic mice. Antibody levels
in plasma and brain homogenates were determined by human sandwich IgG ELISA (Fig. 18 A
and B). The ratio of brain versus plasma drug levels was determined at 0.13fl:0.02% and
0.21i0.06% for human-derived dies NI-302.31F11 and NI-302.35C1, respectively.
These results suggest a 48h brain penetration of the tested NI-302 antibodies in the expected
range in HTT transgenic mice.
Example 25: Characterization of binding affinity and specificity of further antibodies
identified in accordance with the present ion
To determine the half maximal effective concentration (ECso) of fithher identified recombinant
human-derived HTT dies to soluble and aggregated HTT Exonl proteins with 21 or 49
polyQ s direct ELISA with coating of the ent preparations at 5 ug/ml concentration
and ECso determination was performed as described in Example 6, supra.
The determined EC50 for the ent HTT species are shown in Fig. 19 as well as Fig. 31 (A,
D-F) and summarized in Fig. 20. Most derived antibodies bound with high affinity at
subnanomolar or low nanomolar ECso. Some candidates such as NI-302.37C12, NI-302.55D8,
NI-302.11A4, NI-302.22H9 or NI-302.64E5 seemed to have preferred binding to uncut GST-
HTT protein, other antibodies such as NI—302.74C1 1, NI—302.71F6, .4A6, NI-302.12H2
or -8M1 showed high affinity binding with r ECso-values to all HTT preparation
in the ELISA assay. NI-302.15F9 showed about a 5-fold preference of HD49 vs. HD21 with
ECso values in the range of 5 to 35nM. Antibody 33Cll served as l in this experiment
(Fig. 32 G).
Therefore, a panel of high affinity recombinant HTT specific human antibodies was cloned
from memory B-cells d from healthy elderly human donor cohorts and recombinantly
expressed and characterized. Additionally, a screening campaign for additional backup
dies was initiated in a cohort of selected ptomatic patients with Huntington's
disease (HD) carrying different lengths CAG repeat expansions.
To further characterize the binding of the identified recombinant human-derived HTT NI—302
antibodies to e and ated HTT Exonl ns with 21, 35 or 49 polyQ repeats filter
retardation assay utilizing 0.2 ug/ml primary antibody and dot-blot analysis utilizing l ug/ml
primary antibody were performed as described in Example 7, supra.
As shown in Fig. 21 and Fig. 32 (A, G), on the dot blot (Fig. left side, DotBlot) most of the
antibodies characterized showed a preference for detection of HTT proteins with expanded
polyQ tracts (HD49>>HD35>HD21). Furthermore, the signal intensity increased with
increasing incubation times of the aggregation reactions of HD35 and HD49 in ular for
antibodies NI-302.15F9, NI—302.71F6 (Fig. 21, first row ofblots) and NI64E5 (Fig. 32 A,
left side). In the filter retardation analysis NI-302.15F9, NI—302.71F6 (Fig. 21, right side, FRA)
and NI64E5 (Fig. 32 A, right side) detected SDS stable HD35 and HD49 aggregates that
were retained on the 0.2 um pore size membrane whereas other antibodies such as NI-302.44D7
and NI-302.37C12 (Fig. 21, second row of blots) or NI-302.4A6, NI-302.12H2 and NI-
302.8Ml (Fig. 32 D, E, F) did not bind to aggregates on the filter. Antibody 33Cll served as
control in this experiment (Fig. 32 G). These findings based on spotted protein preparations
suggest that l of the cloned NI-302 antibodies show a preference for aggregated HTT
conformations with pathogenic polyQ expansions.
Additionally, the binding specificity of the identified antibodies to unrelated proteins, in
particular to proteins forming ates was assessed by direct ELISA (Fig. 22 and Fig. 33 A,
D-F) as y bed in Example 8, supra. The results showed that most of the human-
derived NI-302 antibodies tested bind specifically to HTT with absent g to the other
unrelated proteins tested.
Example 26: Assessment of the g and epitope mapping of human-derived HTT
antibodies
To map the HTT epitope recognized by the newly identified human-derived antibodies epitope
mapping with tic peptides was performed as described above in Example 9 (Fig. 23 and
Fig. 35 A, D—F). Additionally, the half maximal effective concentration (ECso) of the HTT
antibodies to BSA-coupled peptide fragments of the HTT Exon 1 by direct ELISA with BSA-
coupled Htt Exonl domain peptides was determined as well as ECso determination were
performed as described in Example 10.
Example 27: Assessment of the binding of HTT antibodies in human HTT transgenic
mice
The characterization of the binding of the identified antibodies to HTT pathology in human
HTT transgenic mouse brain tissues was assessed as described in e 12, supra with the
difference that the incubation ofthe sections was performed with 5 nM ffig.3M (74Cl l, 39Cl2,
llA4, 22H9, 78Hl2, 37Cl2, 7D8, 72F10) or 50 nM concentrations (15F9, 71F6, 55D8, 44D7,
7A8, 64E5) ofthe TT antibodies. As shown in Fig. 24 the identified derived anti-
HTT antibodies revealed a prominent and highly specific ng of neuronal intranuclear
inclusion pathology in the um and cortex of R6/1 transgenic animals, as also shown for
the antibodies NI-302.33C11, NI-302.63F3, and NI—302.35Cl, described above. These findings
are consistent with the high affinity binding to HTT aggregates as determined by ELISA and
dot blot analysis in Example 26.
e 28: Basic terization of transgenic mouse model R6/1 of Huntington's
disease (HD)
Tg(HDexon1)61pr/J transgenic mice harbor a 1.9 kb transgene which was isolated from a
phage genomic clone derived from an HD patient and contained the 5' end of the human
gtin (HTT) gene. It was composed of approximately 1 kb of 5' UTR sequences, exon 1
(carrying expanded CAG s of ~130 units) and the first 262 bp of intron 1. This uct
was microinjected into single cell CBAxC57BL/6 embryos. Male founder R6 was bred to
CBAxC57BL/6 females, producing several founder lines (Mangiarini et al., Cell 87 (1996),
493—506). Mice from founder line R6/l have the transgene integrated as a single intact copy
which is ubiquitously expressed. Transgenic mice on a mixed CBAxC57BL/6 genetic
background were backcrossed to C57BL/6J for more than 12 to generate the congenic strain
B6.Cg-Tg(HDexon1)6lpr/J. R6/l transgenic mice t a progressive neurological
phenotype that mimics many of the features of HD, ing choreiform—like movements,
involuntary stereotypic movements, tremor, and epileptic seizures, as well as ement
disorder components, including unusual vocalization. They urinate frequently and exhibit loss
ofbody weight and muscle bulk through the course of the disease. Neurologically they develop
neuronal uclear inclusions (N11) which contain both the HTT and tin proteins.
These N11 have also been identified in human HD ts. The age of onset of HD symptoms
is reported to occur n 15 and 21 weeks for this 6/ 1 line (Naver et a], Neuroscience 122
, 1049-1057; Hodges et al, Genes Brain BehaV. 7(3) (2008), 288-299).
R6/l transgenic mice obtained from Jackson Laboratories were expanded and longitudinally
characterized with respect to behavior phenotype, longitudinal development of body weight,
total brain weight, histopathological is and survival, as shown in Fig. 25. The findings
obtained by in large were in line with the published data and identified this mouse line as a
suitable preclinical model for efficacy studies with human-derived NI-302 antibodies ing
aggregated HTT.
Example 29: Basic characterization of transgenic mouse model N171-82Q of HD
The B6C3-Tg(HD82Gln)8lDbo/J 82Q) transgenic mouse line (Schilling er al., Hum
Mol Genet. 8(3) (1999), 397-407) is a well characterized mouse model for HD. B6C3-
Tg(HD82Gln)8lDbo/J (Nl7l- 82Q) transgenic mice expresses an N—terminally truncated
human HTT cDNA that encodes 82 glutamines and encompasses the first 171 amino acids. The
altered HTT cDNA is under control of a mouse prion protein promoter. Expression is observed
in neurons of the central nervous system. Mice expressing this transgene appear normal at birth
through 1-2 months. However, the mice fail to gain weight, develop tremors, hypokinesis and
lack coordination. They exhibit an abnormal gait and nt hind limb clasping. Their life
expectancy is 5-6 . Studies using HTT antibodies indicated diffuse nuclear labeling and
numerous immunoreactive nuclear inclusions in multiple neuron populations. Additionally
ic damage was evident.
N17l-82Q transgenic mice obtained from Jackson Laboratories were expanded and
longitudinally characterized with respect to behavior phenotype, longitudinal development of
body weight, total brain weight at ge, histopathological analysis and survival (Fig. 26).
These findings by in large were in line with published data and identified this mouse line
additionally to the mouse line described in Example 29, as a suitable preclinical model for
efficacy studies with derived NI-302 antibodies targeting aggregated HTT.
Example 30: Assessment of neuronal inclusion staining in Huntington's disease (HD)
patients
To assess the staining of neuronal inclusions by the identified antibodies of the present
invention in patients immunochistochemical analysis was med. The assessment of the
binding of identified antibodies to HTT pathology in human brain tissues was ed as
described in Example 12, supra with the difference that the incubation of the ns was
performed with 50 nM ofNI-302.33C11, 50 nM ofNI-302.63F3 or 100 nM ofNI-302.35Cl
antibody.
As shown in Fig. 27 the immunohistochemical analysis with the polyP-region binding antibody
.33C11 showed a staining of neuronal uclear inclusions in cortical neurons of
Huntington Disease patients (Fig. 27 A—D) at 50 nM and in striatal neurons of 270 day old, late
disease stage B6.Cg-Tg(HDexon1)6leb/J) transgenic animals at 1 (E) and 5 nM (F)
concentration, while no staining was detected in ansgenic littermates (G), when the
primary antibody was omitted during the ng (H) or if tissue of non-Huntington Disease
controls was stained with 50 nM of NI-302.33C11. The P-rich—domain dy NI-302.63F3
(Fig. 28) and anti-C-terminal domain antibody NI-302.35C1 (Fig. 29) showed within the
immunohistochemical analysis with 50 nM of NI-302.63F3 or 100 nM of NI—302.35C1 a
staining of neuronal intranuclear inclusions (A—C) and staining of some neurites (D) of cortical
neurons of four different Huntington Disease patients (A-D). A ng could also be ed
in the striatal neurons of 270 day old, late disease stage Tg(HDexonl)6leb/J)
transgenic animals at 1 (E) and 50 nM (F) concentration. No staining was detected in non-
transgenic mates (G), if primary antibody was omitted during the staining (H) or if tissue
ofnon-Huntington Disease controls was stained with 50 nM ofNI—302.63F3 or 100 nM ofNI-
302.35C 1, respectively.
In contrast to the specific anti-HTT antibodies of the present invention, immunohistochemical
analysis with the commercially ble anti-polyQ antibody Mab1574 (122000, Chemicon)
showed additional ng of tissue, z'.e. a more general nuclear and cytoplasmic staining and
staining ofsome neurites (Fig. 30 A, D) ofcortical neurons of four different Huntington Disease
patients and in striatal neurons of presymptomatic, 150 day old (Fig. 30 E) and 270 day old
(Fig. 30 F), late disease stage B6.Cg-Tg(HDexonl)6leb/J) transgenic animals.
Example 31: terization of binding affinity and ivity of anti-poly Q/P domain
NI—302.7D8 antibody utilizing direct ELISA and ECso
To determine the half maximal effective concentration (ECso) of recombinant human-derived
HTT antibody .7D8 to soluble and ated HTT Exonl proteins with 21 or 49 polyQ
repeats direct ELISA and EC50 determination was performed as described in Example 6, supra.
It could be shown that NI-302.7D8 binds with similar high affinity to soluble GST-HDZI and
aggregated HD21 with an ECso of approximately 50 to 100 nM albeit showing a preference to
the ted more pathogenic form of aggregated HD49 and e GST-HD49 with an
EC50 of 17 and 6 nM respectively (Fig. 31 B)
Accordingly, the human-derived HTT anti—poly Q/P domain antibody NI—302.7D8 targets an
epitope exposed in aggregated as well as in an uncut, more linear structure of HTT Exonl
protein with ffinity in the low nanomolar range.
Additionally, to characterize the g of recombinant human-derived HTT antibody N1-
302.7D8 to soluble and aggregated HTT Exonl ns with 21, 35 or 49 polyQ repeats using
filter retardation assay and dot blot at a concentration of lug/ml.as described in Example 7,
supra.
It could be shown that on the dot blot (Fig.32 B, left side), antibody NI-302.7D8 equally good
detected proteins of huntingtin with expanded polyQ tracts (HD49=HD35=HD21). In the filter
retardation is (Fig. 32 B, right side, FRA) N1-302.7D8 did not bind to SDS stable HD21,
HD35 or HD49 aggregates on the filter membrane.
Furthermore, to determine the binding of NI-302.7D8 recombinant antibody to unrelated
aggregating protein targets, direct ELISA was med as described in Example 8, supra. As
shown in Fig. 33 B human-derived NI-302.7D8 bound specifically to HTT while a binding to
unrelated proteins could not be shown.
Example 32: Assessment of the binding epitope of the HTT antibodies NI—302-64E5, NI-
302.7D8 and NI—302.72F10
To map the huntingtin epitope recognized by the NI64E5, NI-302.7D8 and NI-302.72F 10
human-derived antibody epitope mapping with synthetic peptides was performed as described
above in Example 9.
Figure 35 A shows a prominent binding ofNI64E5 to es number 10 to 12 indicating
that the epitope recognized by this antibody is localized in the P-rich repeat domain of
huntingtin. The NI-302.64E5 binding epitope is therefore predicted to be localized within HTT
amino acids 48-PQPPPQAQPL-58 (SEQ ID No.: 200). As shown in Fig. 35 B, prominent
binding of NI-302.7D8 was observed to peptides number 6 to 8 indicating that the epitope
recognized by this antibody is zed in the polyQ/polyP repeat domain of huntingtin. The
NI-302.7D8 binding epitope is therefore predicted to be localized within HTT amino acids 28-
QQQQQQQPPP-37 (SEQ ID No.: 201). In contrast, prominent binding of NI-302.72F10 was
observed to peptides number 15 and 16 indicating that the epitope recognized by this antibody
is zed at the anti-N—terminal domain of HTT (Fig. 35 C). The NI-302.72F10 binding
epitope was therefore ted to be localized within HTT amino acids 70-
PPPGPAVAEEPLH-82 (SEQ ID No.: 202).
e 32: Characterization of g affinity and selectivity of anti-N—terminal
domain antibody NI—302.15E8 ing direct ELISA and ECso
To determine the half maximal effective concentration (ECso) of recombinant human-derived
HTT antibody NI-302. 15E8 to soluble and aggregated HTT Exonl proteins with 21 or 49 polyQ
repeats direct ELISA and ECso determination was performed as described in e 6, supra.
It could be shown that NI-302.15E8 binds with higher y to non-aggregated GST—HD49
and 21 and less affinity to aggregated HD49 and HD21, see Fig. 14 A and B.
Accordingly, the human-derived HTT anti-N—terminal domain antibody NI-302.15E8 target an
epitope exposed in both aggregated as well as in e forms of HTT, albeit with a higher
affinity to soluble forms of HTT.
Example 33: e mapping by direct ELISA binding to different Exonl es of
the HTT antibody .15E8
To determine the half maximal effective concentration (EC50) of recombinant human-derived
HTT antibody .15E8 to BSA—coupled peptide fragments of the huntingtin Exon 1 direct
ELISA with BSA-coupled Htt Exonl domain peptides and ECso determination were performed
as described in Example 10.
As shown in Fig. 15 NI-302.15E8 binds with high affinity to the first 19 BSA-coupled amino
acids at the N—terminus as well as to full-length GST-HD49 with an ECso of approx. 0.1 or 15,
respectively.
Example 34: Impact ofHTT dy NI-302.35C1 on behavioral deficits in human HTT
transgenic mice
An Elevated Plus Maze test to measure anxiety-like behavior and a Pole test to measure motor
mance and coordination in human HTT mice were performed to study the anti-HTT
antibody NI-302.35Cl in viva.
Groups and Treatment
For the behavioral analysis two groups of mice with n=24 (12/ 12 male/female) B6.Cg-
x0nl)6leb/J transgenic (tg) mice as described in Example 12 and one group of wild
type (wt) mice were used. The groups of transgenic mice received intraperitoneal treatment of
either 30mg/kg mouse chimeric NI—302.35Cl or vehicle starting at an age for 6-7 weeks until
end stage phenotype of the mice between 7 to 9 months of age and the wild type mice were
injected with the same volume of vehicle. The Elevated-Plus-Maze and pole test oral
tests were performed at an age of 16 and 18 weeks of age respectively.
Elevated Plus Maze test
The Elevated Plus Maze test was performed according to Naver et al., Neursoscience 122
(2003), 1049—1057. The maze was elevated 50 cm above the floor. Four maze arms (30 cm x 5
cm) originated from a central platform forming a cross. Two of the arms located opposite each
other were enclosed by 15 cm high walls (closed arms) while the other arms did not have any
kind of screening (open arms). The test were performed at the beginning of the dark phase of
the s and the illumination on the open arm was in the range of 401ux. Each mouse was
placed in the center of the Plus Maze facing an open arm. The experiment lasted for 5 min and
was recorded with a Videotracking system (VideoMot Software, TSE Systems). Between the
sessions, the maze was rinsed with water and dried with a paper towel. Subsequently the number
of entries made into open and closed arms as well as the time spent in open and closed
compartments were evaluated. An entry was defined as all four paws in one arm. The number
of entries into the open arms and the time spent in the open arms are used as indices ofopen
space—induced y in mice.
The pole test is used widely to assess basal ganglia-related movement disorders in mice; see,
e. g. Matsuura et a]. J. Neurosci. 73 (1997), 45-48; Sedelis et a]. Behav Brain Res. 125 (2001),
109-125, Fernagut et al., Neuroscience 116 (2003), 130. Briefly, animals were placed
head-up on top of a vertical wooden pole 50 cm long (1 cm in diameter). The base of the pole
was placed in the home cage. When placed on the pole, animals orient themselves downward
and descend the length of the pole back into their home cage. On the test day, s received
three , and the total time to descend al) were measured. The results of the third trial
ofthe day is shown in Fig. 24 B.
As shown in Fig. 34 A NI-302.35C1 treated R6/1 animals spend less time in the open arms,
entered the open arms less frequently and did less unprotected head clips on the open arm
compared to vehicle treated R6/1 animals. Hence the NI-302.35C1 treated R6/1 mice displayed
a more anxious phenotype, comparable to the non-transgenic littermates. Furthermore, as
shown in Fig. 24 B NI-302.35C1 treated R6/1 animal showed an improved performance in the
pole test compared to vehicle treated R6/1 animals reaching levels similar to non-transgenic
animals. In summary, the antibody NI-302.35C1 ofthe present invention has a ial impact
on behavioral performance and motor-related tasks in human HTT transgenic mice.
Example 35: Sequence alignment of HTT antibodies
The determination ent identity or similarity was performed with the standard parameters
of the BLASTn program as described in n "Definitions" of the t invention. As
shown in Fig. 36 all antibodies of the present invention are rich of tyrosines in the CDRs.
Example 36: tion of bispecific anti-HTT antibodies
The generation of bispecific antibodies can be performed as generally described in Brennan;
see supra. Starting material for producing ific antibodies are intact IgG anti-HTT
antibodies of the present invention recognizing either a polyP-region, a polyQ/polyP-region,
the P-rich—region, the C terminal-region or the N—terminal region of HTT exon 1 protein as
described in the Examples and ized in Figure 20. The antibodies are treated with pepsin
for three hours at 37 ° C treated in acetate buffer pH 4.0, to cleave the Fc portion ofthe antibody.
The reaction is stopped by increasing the pH to 8 with Tris . Subsequently the solution is
filled up with an equal volume of a mixture of 5, 5'—dithiobisnitrobenzoic acid (DTNB) and
ted with thionitrobenzoate (TNB) for 20 hours at room temperature. The molar ratio of
the DTNB-TNB mixture is 20:30 being established by incubating a 40 mM DTNB solution
with a 10 mM DTT solution for several minutes. After further reduction of the two modified
F(ab') fragments with 0.1 mM DTT for one hour at 25 ° C, the thus obtained F(ab')-TNB and
F(ab')-SH fragments are hybridized to a bispecific F(ab')2-fragment for l h at 25 ° C. Bispecific
F(ab')2-fragments were purified via gel filtration (Superdex 200 column).
Example 37: Characterization of binding y and selectivity of bispecific anti-HTT
dies utilizing direct ELISA and EC50
To ine the half l effective concentration (EC50) ofbispecific HTT antibodies to
soluble and aggregated HTT Exonl proteins with 21 or 49 polyQ repeats direct ELISA and
EC50 determination is performed as described in Example 6, supra. The bispecific HTT
antibodies bind with high affinity to all four s including the aggregated HTT Exonl
HD49, equally ed their respective epitopes exposed in aggregated as well as in soluble
forms of HTT with low nanomolar affinity. Additionally, to characterize the binding of
bispecific HTT antibodies to e and aggregated HTT Exonl proteins with 21, 35 or 49
polyQ repeats filter retardation assay and dot blot as described in Example 7, supra, are
performed. On the dot blot, bispecific HTT antibodies preferentially detect constructs ofHTT
with expanded polyQ tracts. Furthermore, the signal intensity increases with sing
incubation times of the aggregation reactions of HD35 and HD49. In the filter retardation
analysis bispecific HTT antibodies detect HD35 and HD49 aggregates that are retained on the
0.2 um pore size membrane. Based on their dual specificity to HTT and the previous findings
for the binding of the dual dies on membrane bound protein preparations it is
expected that bispecific HTT dies preferentially target aggregated HTT conformations
with pathogenic polyQ expansions. Furthermore, to determine the binding of bispecific anti-
HTT antibodies to unrelated aggregating protein s, direct ELISA is performed as
described in Example 8, supra. In this context, bispecific anti-HTT antibodies bind specifically
to HTT while a binding to unrelated proteins may not be shown.
Claims (30)
1. A human-derived monoclonal anti-huntingtin (HTT) antibody or an HTT-binding fragment, synthetic or biotechnological derivative thereof, which recognizes an epitope in the P-rich region of the amino acid sequence of exon 1 of the HTT gene, and 5 comprises in its variable region the amino acid sequence of the VH and VL region of any one of antibodies NI-302.63F3, NI-302.31F11, NI-302.2A2, NI-302.15D3 or NI- 302.64E5 depicted in: (i) VH ce: SEQ ID NOs: 5, 13, 17, 135, 164, 166; and (ii) VL sequence: SEQ ID NOs: 7, 15, 19, 101, 103, 105, 107, 111, 113, 137, 168, 170, 10 respectively.
2. The antibody or HTT-binding fragment, synthetic or biotechnological tive thereof of claim 1, which is of the IgG type. 15
3. The antibody or HTT-binding fragment, synthetic or biotechnological tive thereof of claim 1 or 2, wherein the light chain is kappa ().
4. The antibody or HTT-binding fragment, synthetic or biotechnological derivative thereof of any one of claims 1 to 3, which is e of g a peptide comprising the epitope 20 and/or aggregated forms of HTT exon 1.
5. The antibody or HTT-binding fragment, synthetic or biotechnological derivative thereof of any one of claims 1 to 4 which specifically binds an epitope in the P-rich-region which ses the amino acid sequence PQPPPQAQPL (SEQ ID No. 140), 25 PPPQLPQPPP (SEQ ID No. 141), PQPQPPPPP (SEQ ID No. 142), or PPPQLPQPPPQAQPL (SEQ ID No. 143).
6. The antibody or HTT-binding fragment, tic or biotechnological derivative thereof of claim 5, which further comprises a polypeptide ce which is heterologous to 30 the VH and VL region or the six CDRs.
7. The antibody or HTT-binding fragment, synthetic or biotechnological derivative thereof of claim 6, wherein the polypeptide sequence comprises a human constant domain.
8. The antibody or HTT-binding fragment, synthetic or biotechnological derivative thereof of claim 7, wherein the human constant domain is of the IgG type.
9. The antibody of any one of claims 1 to 8, wherein the antibody has a binding affinity 5 corresponding to an EC50 (half maximal ive concentration) value of ≤ 20 nM, for binding HD49 and an EC50 value of ≤ 40 nM for binding HD21.
10. The antibody of claim 9, wherein the EC50 value is ≤ 10 nM for binding HD49 and ≤ 10 nM for binding HD21.
11. The antibody of claim 9, wherein the EC50 value is ≤ 1 nM for binding HD49 and ≤ 1 nM for g HD21.
12. The antibody of any one of claims 1 to 11 which is a chimeric murine-human or a 15 murinized dy and/or an antibody fragment selected from the group consisting of a single chain Fv fragment (scFv), an F(ab) fragment, an F(ab') fragment, an F(ab')2 fragment, and a disulfide-linked Fv fragment (sdFv).
13. One or more polynucleotide(s) encoding at least the variable region of the heavy and 20 light chain of the antibody of any one of claims 1 to 12.
14. The polynucleotide(s) of claim 13, which is (are) a cDNA.
15. One or more vector(s) comprising the cleotide(s) of claim 13 or 14.
16. An isolated host cell comprising the polynucleotide(s) of claim 13 or 14 or the vector(s) of claim 15.
17. A method for preparing an TT dy, a biotechnological derivative, or 30 immunoglobulin chain(s) thereof, said method comprising (a) culturing the cell of claim 16 and (b) isolating the antibody or immunoglobulin chain(s) thereof from the culture.
18. The antibody of any one of claims 1 to 12, which is a bispecific antibody.
19. The antibody of claim 18, which recognizes two different epitopes on a n encoded by exon 1 of the HTT gene. 5
20. The antibody of any one of claims 1 to 12, 18 and 19, which is (i) detectably d; or (ii) attached to a drug.
21. The antibody of claim 20, wherein the detectable label is selected from the group 10 consisting of an enzyme, a radioisotope, a fluorophore, and a heavy metal.
22. A composition comprising the dy of any one of claims 1 to 12 and 18 to 21, the polynucleotide(s) of claim 13 or 14, the vector(s) of claim 15, or the cell of claim 16. 15
23. The composition of claim 22, wherein the composition is (a) a pharmaceutical composition and further comprises a pharmaceutically acceptable carrier; or (b) a diagnostic composition. 20
24. The composition of claim 23, wherein the pharmaceutical composition further comprises an additional agent useful for treating diseases and/or symptoms associated with HTT dosis, or wherein the diagnostic composition comprises reagents conventionally used in immuno or nucleic acid based diagnostic methods.
25. 25. The composition of claim 23 or 24, wherein the pharmaceutical composition is a
26. A kit useful in the diagnosis or monitoring of disorders associated with HTT amyloidosis, said kit sing at least one antibody or an HTT-binding nt, 30 synthetic or biotechnological derivative thereof of any one of claims 1 to 12 and 18 to 21 with reagents and/or instructions for use.
27. Use of the antibody or nding fragment, synthetic or biotechnological derivative thereof of any one of claims 1 to 12 and 18 to 21 in the manufacture of a medicament for the treatment of a disease and/or symptoms associated with HTT amyloidosis or for in in vivo ion of or targeting a therapeutic and/or diagnostic agent to HTT in the human body. 5
28. The use of claim 27, wherein said in vivo ion comprises positron emission tomography (PET), single photon emission tomography (SPECT), near infrared (NIR), optical imaging or magnetic resonance imaging (MRI).
29. A method for the treatment of a disease and/or symptoms associated with HTT 10 amyloidosis or for in in vivo detection of or targeting a therapeutic and/or diagnostic agent to HTT in the non-human animal body, which comprises administering the antibody or HTT-binding fragment, synthetic or biotechnological derivative thereof of any one of claims 1 to 12 and 18 to 21 to the non-human animal body. 15
30. The method of claim 29, wherein said in vivo detection comprises positron emission aphy (PET), single photon on tomography (SPECT), near infrared (NIR), optical imaging or magnetic resonance imaging (MRI).
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP14179004 | 2014-07-29 | ||
EP14179004.8 | 2014-07-29 | ||
PCT/EP2015/067327 WO2016016278A2 (en) | 2014-07-29 | 2015-07-29 | Human-derived anti-huntingtin (htt) antibodies and uses thereof |
Publications (2)
Publication Number | Publication Date |
---|---|
NZ728372A NZ728372A (en) | 2021-11-26 |
NZ728372B2 true NZ728372B2 (en) | 2022-03-01 |
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