CN104531633A - Cas9-scForkI fusion protein and application thereof - Google Patents
Cas9-scForkI fusion protein and application thereof Download PDFInfo
- Publication number
- CN104531633A CN104531633A CN201410656091.4A CN201410656091A CN104531633A CN 104531633 A CN104531633 A CN 104531633A CN 201410656091 A CN201410656091 A CN 201410656091A CN 104531633 A CN104531633 A CN 104531633A
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- China
- Prior art keywords
- cas9
- scforki
- gly
- fusion protein
- primer
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- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
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- 108020001507 fusion proteins Proteins 0.000 title abstract 8
- 102000037865 fusion proteins Human genes 0.000 title abstract 8
- 108091033409 CRISPR Proteins 0.000 claims abstract description 15
- 238000012239 gene modification Methods 0.000 claims abstract description 6
- 238000007877 drug screening Methods 0.000 claims abstract description 4
- 230000004927 fusion Effects 0.000 claims description 22
- 230000002779 inactivation Effects 0.000 claims description 7
- 239000002773 nucleotide Substances 0.000 claims description 6
- 125000003729 nucleotide group Chemical group 0.000 claims description 6
- 230000005017 genetic modification Effects 0.000 claims description 4
- 235000013617 genetically modified food Nutrition 0.000 claims description 4
- 125000003275 alpha amino acid group Chemical group 0.000 claims description 2
- 238000013461 design Methods 0.000 abstract description 6
- 108090000623 proteins and genes Proteins 0.000 abstract description 6
- HKZAAJSTFUZYTO-LURJTMIESA-N (2s)-2-[[2-[[2-[[2-[(2-aminoacetyl)amino]acetyl]amino]acetyl]amino]acetyl]amino]-3-hydroxypropanoic acid Chemical compound NCC(=O)NCC(=O)NCC(=O)NCC(=O)N[C@@H](CO)C(O)=O HKZAAJSTFUZYTO-LURJTMIESA-N 0.000 abstract description 3
- 238000005520 cutting process Methods 0.000 abstract description 2
- 230000004913 activation Effects 0.000 abstract 1
- 238000010353 genetic engineering Methods 0.000 abstract 1
- 230000000694 effects Effects 0.000 description 12
- PEDCQBHIVMGVHV-UHFFFAOYSA-N Glycerine Chemical compound OCC(O)CO PEDCQBHIVMGVHV-UHFFFAOYSA-N 0.000 description 9
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 8
- 238000006243 chemical reaction Methods 0.000 description 8
- 108020004414 DNA Proteins 0.000 description 7
- 108020005004 Guide RNA Proteins 0.000 description 7
- 101100022252 Mus musculus Malt1 gene Proteins 0.000 description 6
- 210000004027 cell Anatomy 0.000 description 6
- 239000003292 glue Substances 0.000 description 6
- 239000013612 plasmid Substances 0.000 description 6
- 108091028113 Trans-activating crRNA Proteins 0.000 description 5
- 230000014509 gene expression Effects 0.000 description 5
- 108091028043 Nucleic acid sequence Proteins 0.000 description 4
- 239000000872 buffer Substances 0.000 description 4
- 239000012634 fragment Substances 0.000 description 4
- 235000011187 glycerol Nutrition 0.000 description 4
- 239000011780 sodium chloride Substances 0.000 description 4
- QKNYBSVHEMOAJP-UHFFFAOYSA-N 2-amino-2-(hydroxymethyl)propane-1,3-diol;hydron;chloride Chemical compound Cl.OCC(N)(CO)CO QKNYBSVHEMOAJP-UHFFFAOYSA-N 0.000 description 3
- KCXVZYZYPLLWCC-UHFFFAOYSA-N EDTA Chemical compound OC(=O)CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O KCXVZYZYPLLWCC-UHFFFAOYSA-N 0.000 description 3
- 230000004087 circulation Effects 0.000 description 3
- 239000007788 liquid Substances 0.000 description 3
- 230000009465 prokaryotic expression Effects 0.000 description 3
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 2
- 241000894006 Bacteria Species 0.000 description 2
- 108010008532 Deoxyribonuclease I Proteins 0.000 description 2
- 102000007260 Deoxyribonuclease I Human genes 0.000 description 2
- 108090000790 Enzymes Proteins 0.000 description 2
- 102000004190 Enzymes Human genes 0.000 description 2
- 238000010586 diagram Methods 0.000 description 2
- 239000012154 double-distilled water Substances 0.000 description 2
- 238000001415 gene therapy Methods 0.000 description 2
- 150000002460 imidazoles Chemical class 0.000 description 2
- 238000000034 method Methods 0.000 description 2
- 238000002360 preparation method Methods 0.000 description 2
- 239000000047 product Substances 0.000 description 2
- 239000000243 solution Substances 0.000 description 2
- JKMHFZQWWAIEOD-UHFFFAOYSA-N 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid Chemical compound OCC[NH+]1CCN(CCS([O-])(=O)=O)CC1 JKMHFZQWWAIEOD-UHFFFAOYSA-N 0.000 description 1
- FRXSZNDVFUDTIR-UHFFFAOYSA-N 6-methoxy-1,2,3,4-tetrahydroquinoline Chemical compound N1CCCC2=CC(OC)=CC=C21 FRXSZNDVFUDTIR-UHFFFAOYSA-N 0.000 description 1
- 241000672609 Escherichia coli BL21 Species 0.000 description 1
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 1
- 239000007995 HEPES buffer Substances 0.000 description 1
- 101710163270 Nuclease Proteins 0.000 description 1
- 102000035195 Peptidases Human genes 0.000 description 1
- 108091005804 Peptidases Proteins 0.000 description 1
- 101150063416 add gene Proteins 0.000 description 1
- 238000001042 affinity chromatography Methods 0.000 description 1
- 229910021529 ammonia Inorganic materials 0.000 description 1
- QGZKDVFQNNGYKY-UHFFFAOYSA-N ammonia Natural products N QGZKDVFQNNGYKY-UHFFFAOYSA-N 0.000 description 1
- 230000009286 beneficial effect Effects 0.000 description 1
- 230000015572 biosynthetic process Effects 0.000 description 1
- 239000003795 chemical substances by application Substances 0.000 description 1
- 238000005336 cracking Methods 0.000 description 1
- 230000009089 cytolysis Effects 0.000 description 1
- 230000007812 deficiency Effects 0.000 description 1
- 229960000935 dehydrated alcohol Drugs 0.000 description 1
- 238000011033 desalting Methods 0.000 description 1
- 238000001514 detection method Methods 0.000 description 1
- 230000029087 digestion Effects 0.000 description 1
- 238000006471 dimerization reaction Methods 0.000 description 1
- 230000005611 electricity Effects 0.000 description 1
- 238000001962 electrophoresis Methods 0.000 description 1
- 238000010828 elution Methods 0.000 description 1
- 239000012149 elution buffer Substances 0.000 description 1
- 210000003527 eukaryotic cell Anatomy 0.000 description 1
- 238000013467 fragmentation Methods 0.000 description 1
- 238000006062 fragmentation reaction Methods 0.000 description 1
- 238000003198 gene knock in Methods 0.000 description 1
- 238000003209 gene knockout Methods 0.000 description 1
- 239000012145 high-salt buffer Substances 0.000 description 1
- 230000036039 immunity Effects 0.000 description 1
- 238000000338 in vitro Methods 0.000 description 1
- 238000011534 incubation Methods 0.000 description 1
- 230000006698 induction Effects 0.000 description 1
- BPHPUYQFMNQIOC-NXRLNHOXSA-N isopropyl beta-D-thiogalactopyranoside Chemical compound CC(C)S[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O BPHPUYQFMNQIOC-NXRLNHOXSA-N 0.000 description 1
- 239000012160 loading buffer Substances 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 230000001404 mediated effect Effects 0.000 description 1
- 239000011259 mixed solution Substances 0.000 description 1
- 239000002244 precipitate Substances 0.000 description 1
- 235000019833 protease Nutrition 0.000 description 1
- 230000007026 protein scission Effects 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 238000000746 purification Methods 0.000 description 1
- 238000000197 pyrolysis Methods 0.000 description 1
- 108091008146 restriction endonucleases Proteins 0.000 description 1
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 1
- 241000894007 species Species 0.000 description 1
- 239000006228 supernatant Substances 0.000 description 1
- 238000003786 synthesis reaction Methods 0.000 description 1
- 238000012360 testing method Methods 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- 230000009466 transformation Effects 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/14—Hydrolases (3)
- C12N9/16—Hydrolases (3) acting on ester bonds (3.1)
- C12N9/22—Ribonucleases RNAses, DNAses
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Wood Science & Technology (AREA)
- Molecular Biology (AREA)
- Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Genetics & Genomics (AREA)
- Medicinal Chemistry (AREA)
- Microbiology (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Biomedical Technology (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Description
5×primerSTAR Buffer | 10 ul |
dNTP (2.5 mM) | 4μl |
TaKaRa Taq HS (5 U/μl) | 0.5ul |
Primer_F1 20pmol | 1ul |
Primer_ R1 20pmol | 1ul |
Cas9-ForkI-(Gly-Gly-Gly-Gly-Ser)10-ForkI (20ng/ul) | 1ul |
ddH2O | 32.5 ul |
Amount to | 50 ul |
5×primerSTAR Buffer | 10 ul |
dNTP (2.5 mM) | 4μl |
TaKaRa Taq HS (5 U/μl) | 0.5ul |
Primer_F2 20pmol | 1ul |
Primer_ R2 20pmol | 1ul |
Cas9-ForkI-(Gly-Gly-Gly-Gly-Ser)10-ForkI (20ng/ul) | 1ul |
ddH2O | 32.5 ul |
Amount to | 50 ul |
10×Taq Buffer | 5 ul |
dNTP (2.5 mM) | 4μl |
TaKaRa Taq (5 U/μl) | 0.5ul |
Primer F 20pmol | 1ul |
Primer R20pmol | 1ul |
Genomic dna 100ng/ul | 1ul |
ddH 2O | 37.5 ul |
Amount to | 50 ul |
Sequence | SEQ ID NO. | |
Primer Primer_F1 | CAGCCTCCGGACTCTAGAGCCACCATGGACAAGAAGTACTC | 3 |
Primer Primer_ R1 | AACTCATTACTAACCGGTTCATGAGCGGAAATTGATCTCGC | 4 |
The gRNA sequence of Malt1 gene | AACTGTGCTGCCGGGCAAC | 5 |
Primer primer F | TGCTTTACAAAGTTTCCAGCTGAAG | 6 |
Primer Primer R | AACCAACCAACCAACCAGCTAA | 7 |
Primer Primer_F2 | ttgttagcag ccggatccat ggacaagaag tactccattg ggc | 9 |
Primer Primer_ R2 | atcgaaggtc gtcatatgtc attatgagcg gaaattgatc tcg | 10 |
Claims (6)
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201410656091.4A CN104531633A (en) | 2014-11-18 | 2014-11-18 | Cas9-scForkI fusion protein and application thereof |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201410656091.4A CN104531633A (en) | 2014-11-18 | 2014-11-18 | Cas9-scForkI fusion protein and application thereof |
Publications (1)
Publication Number | Publication Date |
---|---|
CN104531633A true CN104531633A (en) | 2015-04-22 |
Family
ID=52847267
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN201410656091.4A Pending CN104531633A (en) | 2014-11-18 | 2014-11-18 | Cas9-scForkI fusion protein and application thereof |
Country Status (1)
Country | Link |
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CN (1) | CN104531633A (en) |
Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN106011104A (en) * | 2015-05-21 | 2016-10-12 | 清华大学 | Method for carrying out gene editing and expression regulation by utilizing Cas splitting system |
WO2018024119A1 (en) * | 2016-08-03 | 2018-02-08 | 南京大学 | Method for editing target polynucleotide and application thereof |
CN113604608A (en) * | 2021-08-05 | 2021-11-05 | 天益健康科学研究院(镇江)有限公司 | Buffer solution for cas12a editing DNA, preparation method and application thereof |
Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2014144288A1 (en) * | 2013-03-15 | 2014-09-18 | The General Hospital Corporation | Using rna-guided foki nucleases (rfns) to increase specificity for rna-guided genome editing |
-
2014
- 2014-11-18 CN CN201410656091.4A patent/CN104531633A/en active Pending
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2014144288A1 (en) * | 2013-03-15 | 2014-09-18 | The General Hospital Corporation | Using rna-guided foki nucleases (rfns) to increase specificity for rna-guided genome editing |
Non-Patent Citations (1)
Title |
---|
JOHN P GUILINGER ET AL.: "Fusion of catalytically inactive cas9 to fokI nuclease improves the specificity of genome modification", 《NATURE BIOTECHNOLOGY》 * |
Cited By (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN106011104A (en) * | 2015-05-21 | 2016-10-12 | 清华大学 | Method for carrying out gene editing and expression regulation by utilizing Cas splitting system |
CN106011104B (en) * | 2015-05-21 | 2019-09-27 | 清华大学 | Gene editing and expression regulation method are carried out using Cas system is split |
WO2018024119A1 (en) * | 2016-08-03 | 2018-02-08 | 南京大学 | Method for editing target polynucleotide and application thereof |
CN113604608A (en) * | 2021-08-05 | 2021-11-05 | 天益健康科学研究院(镇江)有限公司 | Buffer solution for cas12a editing DNA, preparation method and application thereof |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
C06 | Publication | ||
PB01 | Publication | ||
EXSB | Decision made by sipo to initiate substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
ASS | Succession or assignment of patent right |
Owner name: SUZHOU GENE PLAYER BIOMEDICINE TECHNOLOGY CO., LTD Free format text: FORMER OWNER: LI YUNYING Effective date: 20150729 |
|
C41 | Transfer of patent application or patent right or utility model | ||
TA01 | Transfer of patent application right |
Effective date of registration: 20150729 Address after: 215024 Suzhou Jiangsu Industrial Park, No., No. 388, building D, No. 404 Applicant after: Suzhou Jing bio Pharmaceutical Technology Co. Address before: 510000, No. 45, Zhongshan Avenue, Tianhe District, Guangdong, Guangzhou, T4 Applicant before: Li Yunying |
|
C41 | Transfer of patent application or patent right or utility model | ||
CB02 | Change of applicant information |
Inventor after: Cheng Gang Inventor before: Li Yunying |
|
COR | Change of bibliographic data | ||
TA01 | Transfer of patent application right |
Effective date of registration: 20161212 Address after: 215000 Wuzhong District City, Suzhou Province, Guo Xiang street, East Ring Road, No. 2, building 999, No. Applicant after: Suzhou Kechuang Biotechnology Co.,Ltd. Address before: 215024 Suzhou Jiangsu Industrial Park, No., No. 388, building D, No. 404 Applicant before: Suzhou Jing bio Pharmaceutical Technology Co. |
|
WD01 | Invention patent application deemed withdrawn after publication | ||
WD01 | Invention patent application deemed withdrawn after publication |
Application publication date: 20150422 |