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Run and Usage

  • make
  • usage: ./SVfeature -D -b test.list or ./SVfeature -D -e 0.5 -m 1000 -b test.list

Note

  • Need bai for each bam
  • Output finename is bam_filename_normalized and bam_filename_absolute. The former is used for training model.
  • Output format: feature1, feature2.......
  • Need samtools in $PATH
  • Need SeqAn included

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