This repository contains three example datasets for TSCAN: HSMM dataset without prior differential gene expression information; HSMM dataset with prior differential gene expression information; and LPS dataset. NOTE: all data have been log transformed. DO NOT enable log transformation in the GUI if you wish to reproduce the results in the paper.

HSMM_Y.txt: The Y matrix of HSMM dataset without prior differential gene expression information.

HSMM_E.txt: The E matrix of HSMM dataset without prior differential gene expression information.

HSMM.R: R code to run waterfall and kmeans analysis on HSMM dataset without prior differential gene expression information.

HSMMgene_Y.txt: The Y matrix of HSMM dataset with prior differential gene expression information.

HSMM_gene.R: R code to run waterfall and kmeans analysis on HSMM dataset with prior differential gene expression information.

LPS_Y.txt: The Y matrix of LPS dataset.

LPS_E.txt: The E matrix of LPS dataset.

LPS.R: R code to run waterfall and kmeans analysis on LPS dataset.

qNSC_Y.txt: The Y matrix of qNSC dataset.

qNSC_E.txt: The E matrix of qNSC dataset.

qNSC.R: R code to run waterfall and kmeans analysis on qNSC dataset.