🎮 Your friendly TypeScript 2D game engine for the web 🗡️

Add template glycans to a protein using Pymol

Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes

This project is about analytical code for the EWAS of ESRD

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

Accurate Prediction of DNA structure from its sequence using Machine Learning

Code for running RFdiffusion

Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

🎨 Python Echarts Plotting Library

ColabFold on your local PC

dcHiC: Differential compartment analysis for Hi-C datasets

AlphaFold2 non-docker setup

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

Open source code for AlphaFold.

Foldseek enables fast and sensitive comparisons of large structure sets.

Graph theory (network) library for visualisation and analysis

Single cell RNA sequencing analysis course

Automatically exported from code.google.com/p/cdhit

Multi-task and masked language model-based protein sequence embedding models.

A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

My work on building a deep neural network for fast and accurate protein protein interaction prediction

Trinity RNA-Seq de novo transcriptome assembly

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

ChIP-seq analysis notes from Ming Tang

A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks