GitHub - zfmandell/the-workshop: as the name suggests, nothing official in here. Just a few things somewhere in utero.

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as the name suggests, nothing official in here. Just a few things somewhere in utero.

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
.DS_Store		.DS_Store
AU_bp_with_rnet.py		AU_bp_with_rnet.py
A_G_SI_gen.py		A_G_SI_gen.py
A_crunch.py		A_crunch.py
A_hairpin_U_strip.py		A_hairpin_U_strip.py
CDS_delta_compare.py		CDS_delta_compare.py
CDS_parse.py		CDS_parse.py
CLIP_filter.py		CLIP_filter.py
CSV_seq_strip.py		CSV_seq_strip.py
CT_hairpin_competing_structures.py		CT_hairpin_competing_structures.py
CT_hairpin_stem.py		CT_hairpin_stem.py
CT_info.py		CT_info.py
CT_struct_grab.py		CT_struct_grab.py
CT_term_duplex.py		CT_term_duplex.py
CV_strip.py		CV_strip.py
DESeq.py		DESeq.py
DESeq2.R		DESeq2.R
DE_annotator.py		DE_annotator.py
DE_end_grab.py		DE_end_grab.py
DE_gene_grab.py		DE_gene_grab.py
DE_gene_grab_2.0.py		DE_gene_grab_2.0.py
DE_strip.py		DE_strip.py
FPUTR_CDS.py		FPUTR_CDS.py
MFE_compile.py		MFE_compile.py
POT_antisense.py		POT_antisense.py
RNET_normalize.py		RNET_normalize.py
RNET_volcano.py		RNET_volcano.py
RR.py		RR.py
SD_delta.py		SD_delta.py
SD_delta_II.py		SD_delta_II.py
SD_delta_III.py		SD_delta_III.py
SD_fasta_parse.py		SD_fasta_parse.py
SD_generator.py		SD_generator.py
SD_one.py		SD_one.py
SD_react_parse.py		SD_react_parse.py
SD_two.py		SD_two.py
TE_calc_Rho_CSV.py		TE_calc_Rho_CSV.py
TE_calc_Rho_CSV_compiled.py		TE_calc_Rho_CSV_compiled.py
TE_calc_Rho_bedgraph.py		TE_calc_Rho_bedgraph.py
TE_calc_Rho_test.py		TE_calc_Rho_test.py
TE_calc_build.py		TE_calc_build.py
TE_calc_test.py		TE_calc_test.py
TSS_placement.py		TSS_placement.py
TSS_placement_2.py		TSS_placement_2.py
TableS2_adjuster.py		TableS2_adjuster.py
annotate_new_ends.py		annotate_new_ends.py
antisense_crunch.py		antisense_crunch.py
bam_end_finder.py		bam_end_finder.py
bam_stringtie.sh		bam_stringtie.sh
bam_to_bigwig.sh		bam_to_bigwig.sh
bam_to_cov.sh		bam_to_cov.sh
bed_end_compare.py		bed_end_compare.py
bed_to_fasta.py		bed_to_fasta.py
bedgraph_check.py		bedgraph_check.py
bedgraph_end_gen.py		bedgraph_end_gen.py
bedgraph_seq_strip.py		bedgraph_seq_strip.py
bedgraph_thresh.py		bedgraph_thresh.py
centrimo_find.py		centrimo_find.py
conserved_terms.py		conserved_terms.py
convergent.py		convergent.py
convergent_II.py		convergent_II.py
convergent_III.py		convergent_III.py
coord_CDS_dist.py		coord_CDS_dist.py
coord_thresh_CDS_mono.py		coord_thresh_CDS_mono.py
corr_merge.sh		corr_merge.sh
cov_merge.py		cov_merge.py
cov_to_bedgraph.py		cov_to_bedgraph.py
coverage_merge.py		coverage_merge.py
csv_bed_end_compare.py		csv_bed_end_compare.py
csv_end_clean.py		csv_end_clean.py
csv_fasta.py		csv_fasta.py
dbg.py		dbg.py
dbg_run.py		dbg_run.py
deltaG_strip.py		deltaG_strip.py
delta_merge.py		delta_merge.py
deltadiff_mono_CDS_peaks.py		deltadiff_mono_CDS_peaks.py
deltadiff_mono_CDS_raw.py		deltadiff_mono_CDS_raw.py
differential_pauses.py		differential_pauses.py
differential_pauses_median.py		differential_pauses_median.py
differential_pauses_median_RNET.py		differential_pauses_median_RNET.py
draw-heatmap.r		draw-heatmap.r
edger.r		edger.r
end_annotater		end_annotater
end_annotater.py		end_annotater.py
end_compare.py		end_compare.py
end_grabber.py		end_grabber.py
end_merge.py		end_merge.py
end_ribo_density.py		end_ribo_density.py
end_stitch.py		end_stitch.py
end_strip.py		end_strip.py
end_translate.py		end_translate.py
excel_strip.py		excel_strip.py
factor_effect.py		factor_effect.py
fasta_delta.py		fasta_delta.py
fasta_parse.py		fasta_parse.py
fasta_stitch.py		fasta_stitch.py
fasta_strip.py		fasta_strip.py
fasta_subsample.py		fasta_subsample.py
feature_cluster.py		feature_cluster.py
feature_retention.py		feature_retention.py

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