Stars
Tips for Nextflow and cheatsheet for channel operation
This is a collection of tutorials for learning how to use Docker with various tools. Contributions welcome.
resources for bioinformatics education
Curated list of project-based tutorials
A Python package to make publication-ready but customizable coefficient plots.
Scripts and lab notebooks for characterising the variant landscape of CYP2D6 in the SG10K_Health cohort
ikmb / aldy
Forked from 0xTCG/aldyAllelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
Install GISTIC2 by one line code; GISTIC2 docker image
Copy number variant detection from targeted DNA sequencing
resources for learning bioinformatics
A minimap2 frontend for PacBio native data formats
A centralized location for storing curated data from cBioPortal
An opinionated list of awesome Python frameworks, libraries, software and resources.
Using classification techniques (logistic regression model and random forest) to predict the diagnosis of breast tumor tissues as either malignant or benign based on ten cytological features.
Presentation-Ready Data Summary and Analytic Result Tables
Applied Computational Genomics Course at UU: Spring 2020
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
This is GWAS pipeline based on plink including QC, Imputation and Association analysis
A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data
SBIMB / StellarPGx
Forked from twesigomwedavid/CypGenCalling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
DeepSurv is a deep learning approach to survival analysis.