-
Sun Yat-sen University
- China
-
15:51
(UTC +08:00)
Highlights
- Pro
-
UCSCXenaShiny Public
Forked from openbiox/UCSCXenaShiny📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.hiplot.cn/ucsc-xena-shiny/, …
R GNU General Public License v3.0 UpdatedAug 19, 2024 -
yunbokai.github.io Public
Forked from GuangLun2000/GuangLun2000.github.ioHere is Lab website of Cheng Wang.
CSS MIT License UpdatedSep 6, 2023 -
RenalTumor Public
Forked from Dragonlongzhilin/RenalTumorSingle-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinomaCD文章代码极好
Jupyter Notebook UpdatedAug 24, 2023 -
get_internet_shengxin_paper Public
Forked from ixxmu/mp_duty抓取网络文章到github issues保存 很多公众号文章都在这里
Ruby UpdatedJul 29, 2023 -
-
-
awesome-R-R- Public
Forked from qinwf/awesome-RA curated list of awesome R packages, frameworks and software.
R UpdatedMar 27, 2023 -
single-cell-best-practices- Public
Forked from theislab/single-cell-best-practicesThis project is work in progress! https://www.sc-best-practices.org基于python的单细胞代码
-
scanpy-python Public
Forked from scverse/scanpySingle-cell analysis in Python. Scales to >1M cells.
-
-pyrovelocity Public
Forked from pinellolab/pyrovelocityProbabilistic model of RNA velocity
Python GNU Affero General Public License v3.0 UpdatedMar 22, 2023 -
-cellrank Public
Forked from theislab/cellrankCellRank for directed single-cell fate mapping
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 20, 2023 -
scvelo- Public
Forked from theislab/scveloRNA Velocity generalized through dynamical modeling
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 17, 2023 -
TCM-T-pancaner Public
Forked from Coolgenome/TCMCodes used in pan-T cell analysis
R UpdatedMar 13, 2023 -
stImage- Public
Forked from YuWang-VUMC/stImageR package for integration analysis of spatial transcriptomics and morphology images可以借鉴代码
R Other UpdatedMar 8, 2023 -
-stLearn Public
Forked from BiomedicalMachineLearning/stLearnA novel machine learning pipeline to analyse spatial transcriptomics data
Python Other UpdatedMar 8, 2023 -
-
decoupleR- Public
Forked from saezlab/decoupleRR package to infer biological activities from omics data using a collection of methods.
R GNU General Public License v3.0 UpdatedFeb 27, 2023 -
mistyR Public
Forked from saezlab/mistyRMultiview Intercellular SpaTial modeling framework空间模式探索
-
GBM_CAF_open Public
Forked from alexanderchang1/GBM_CAF_openPublic access scripts from Aghi Lab CAF projects 里面有细胞分群稳定性代码?
Python GNU General Public License v3.0 UpdatedFeb 8, 2023 -
ccRCC_sn_publication Public
Forked from yigewu/ccRCC_sn_publicationhis github repository contains the data files and analysis code used in "Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell c…
R MIT License UpdatedFeb 6, 2023 -
Seurat.utils-Seurat- Public
Forked from vertesy/Seurat.utilsVarious utility functions for Seurat single-cell analysis
R GNU General Public License v3.0 UpdatedFeb 1, 2023 -
progeny-bulk Public
Forked from saezlab/progenyR package for Pathway RespOnsive GENe activity inference
R Apache License 2.0 UpdatedJan 30, 2023 -
-
HNSCC- Public
Forked from FredHutch/Galeano-Nino-Bullman-Intratumoral-Microbiota_2022Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
Python MIT License UpdatedJan 13, 2023 -
single-cell-tutorial Public
Forked from theislab/single-cell-tutorial基于python的单细胞代码流程
-
SpatialInferCNV Public
Forked from aerickso/SpatialInferCNVClone Calling from Visium Spatial Transcriptomics of Cancer samples
HTML UpdatedDec 8, 2022 -
cNMF Public
Forked from dylkot/cNMFCode and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
Jupyter Notebook MIT License UpdatedNov 30, 2022 -
RCC-spatial-mapping Public
Forked from ruoyan-li/RCC-spatial-mappingMapping single-cell transcriptomes in the intratumoral and associated territories of kidney cancer文章代码 空间转录组与侵袭前沿;NMF;Nichnet;cell2loaction;inferCNV,聚类树,OR检验
Jupyter Notebook UpdatedNov 24, 2022 -
transcriptutorial- Public
Forked from saezlab/transcriptutorialThis is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
HTML GNU General Public License v3.0 UpdatedNov 23, 2022 -
SPARK- Public
Forked from xzhoulab/SPARKSpatially resolved transcriptomic analysis