documentation update + biopython version 1.80 + sklearn version 1.2.2

fix domino, and visualizing network. add pydot as dependencies.

fix visualize clusters

plot clusters bug, v0.1.7

visualize bug

Merge branch 'master' of https://github.com/yollct/spycone

fix array bug in preprocess

change setup version

Update python-publish.yml