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@ylaboratory

ylaboratory

The home for scripts and tools developed by Vicky Yao's laboratory at the CS department at Rice University.

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  1. ETNA ETNA Public

    Embeddings to Network Alignment - align biological networks between two species

    Python 8 4

  2. splitpea splitpea Public

    A tool for calculating PPI network rewiring due to alternative splicing

    Jupyter Notebook 1 1

  3. flambe flambe Public

    datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files

    Jupyter Notebook 4

  4. seismic seismic Public

    Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data

    R 1 1

Repositories

Showing 9 of 9 repositories
  • ANDES Public
    ylaboratory/ANDES’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Jul 14, 2024
  • flambe Public

    datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files

    ylaboratory/flambe’s past year of commit activity
    Jupyter Notebook 4 CC-BY-4.0 0 0 0 Updated Jul 8, 2024
  • biomedical Public Forked from bigscience-workshop/biomedical

    Tools for curating biomedical training data for large-scale language modeling

    ylaboratory/biomedical’s past year of commit activity
    Python 1 111 0 0 Updated Jun 4, 2024
  • seismic Public

    Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data

    ylaboratory/seismic’s past year of commit activity
    R 1 BSD-3-Clause 1 0 0 Updated May 3, 2024
  • ar-biorxiv-style Public Forked from kourgeorge/arxiv-style

    A Latex style and template for paper preprints (based on NIPS style)

    ylaboratory/ar-biorxiv-style’s past year of commit activity
    TeX 0 MIT 296 0 0 Updated Mar 12, 2024
  • splitpea Public

    A tool for calculating PPI network rewiring due to alternative splicing

    ylaboratory/splitpea’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 1 0 0 Updated Jan 15, 2024
  • ETNA Public

    Embeddings to Network Alignment - align biological networks between two species

    ylaboratory/ETNA’s past year of commit activity
    Python 8 BSD-3-Clause 4 0 1 Updated Sep 8, 2023
  • kraken2 Public Forked from DerrickWood/kraken2

    The second version of the Kraken taxonomic sequence classification system

    ylaboratory/kraken2’s past year of commit activity
    C++ 0 MIT 269 0 0 Updated Jun 1, 2021
  • krakenuniq Public Forked from fbreitwieser/krakenuniq

    🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

    ylaboratory/krakenuniq’s past year of commit activity
    C++ 0 44 0 0 Updated May 27, 2021

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