Unix, R and python tools for genomics and data science

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition

A personal collection of food in San Diego. (primarily asian food) (in Chinese)

Sequential regulatory activity predictions with deep convolutional neural networks.

Mapping pipeline for snmC-seq based technologies.

Analysis of Paired-Tag datasets

single-cell multi-omics tools