Automated fitting of RNA/DNA absorbance melting curves and fluorescence binding isotherms in R

With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...

Python Suite for Advanced General Ensemble Simulations

RNA Structural Bioinformatics Crash Course & Data Science in Python

Describe and apply transformation on molecular structures and topologies

Productive, portable, and performant GPU programming in Python.

Open source code for AlphaFold.

Coarse-grained molecular dynamics for protein physics. NOTE: this has been superseded by Upside 2: https://github.com/sosnicklab/upside2-md

A community-maintained Python framework for creating mathematical animations.