R's data.table package extends data.frame:

The Composer of ggplots

Rmd source files for the HarvardX series PH525x

Enhancing {ggplot2} plots with statistical analysis 📊📣

'ggplot2' Based Publication Ready Plots

A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live

Accelerating ggplot2

📜 Discover and install useful RStudio addins

🎄Visualization and annotation of phylogenetic trees

A grammar of graphics for comparative genomics

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

RStudio Addins to Simplify Markdown Writing

🌈 Interactive analysis of metagenomics data

Create tabs of View() output for each chained pipe

Pretty heatmaps

adegenet: a R package for the multivariate analysis of genetic markers

Decorate a plot with associated information

treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes

Genome wide orthology inference and dNdS estimation

Bayesian inference of ancestral dates on bacterial phylogenetic trees

version 0.1.4

🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

🎨 scatter pie plot

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

Infer the regular expression (regex) of a string 🔤 🔢 🔍

PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.

post processing of bacterial pangenome gene presence/absence matrices

R script for combine HTSeq outputs into one read count matrix in R