Stars
A curated list of resources for Learning with Noisy Labels
Self-supervised contrastive learning for time series via time-frequency consistency
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
a tool for simulating nanopore raw signal data
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
Visualise and analyse nanopore (ONT) raw signals
A multi-mode modulator for multi-domain few-shot classification (ICCV)
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computati…
Tools (written in C using htslib) for manipulating next-generation sequencing data
A bioinformatics tool for working with modified bases
Library for implementing reservoir computing models (echo state networks) for multivariate time series classification and clustering.
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
A PyTorch implementation of the NIPS 2017 paper "Dynamic Routing Between Capsules".
Code for the paper "Next Generation Reservoir Computing"
Official TensorFlow code for the paper "Efficient-CapsNet: Capsule Network with Self-Attention Routing".
An Echo State Network module for PyTorch.
A Siamese Network based on Reservoir Computing and Convolutional Neural Network for Image Similarity Calculation
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
Oxford Nanopore Technologies fast5 API software
A versatile pairwise aligner for genomic and spliced nucleotide sequences
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
slow5lib is a software library for reading & writing SLOW5 files.
Pod5: a high performance file format for nanopore reads.
Methylation/modified base calling separated from basecalling.