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tfmodisco-lite Public
Forked from jmschrei/tfmodisco-liteA lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
Python MIT License UpdatedMar 26, 2024 -
DeepLearningExamples Public
Forked from NVIDIA/DeepLearningExamplesState-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.
Jupyter Notebook UpdatedSep 17, 2023 -
FEICP Public
Finding Exon-Intron circular RNAs from paired-end RNA-seq
Python Other UpdatedAug 30, 2023 -
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deepmind-research Public
Forked from google-deepmind/deepmind-researchThis repository contains implementations and illustrative code to accompany DeepMind publications
Jupyter Notebook Apache License 2.0 UpdatedAug 15, 2022 -
ggplot-courses Public
Forked from R-tutorials/ggplot-courses👨🏫 ggplot2 Teaching Material
UpdatedApr 14, 2022 -
psirc Public
Forked from Christina-hshi/psircFull-length linear and circular transcript isoform reconstruction and quantification
C MIT License UpdatedJan 25, 2022 -
deep-learning-with-python-notebooks Public
Forked from fchollet/deep-learning-with-python-notebooksJupyter notebooks for the code samples of the book "Deep Learning with Python"
Jupyter Notebook MIT License UpdatedOct 3, 2021 -
GenomicFeatures Public
Forked from Bioconductor/GenomicFeaturesConveniently import and query gene models
R UpdatedAug 26, 2021 -
awesome-single-cell Public
Forked from seandavi/awesome-single-cellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MIT License UpdatedJul 27, 2021 -
isoCirc Public
Forked from Xinglab/isoCircisoCirc
Python GNU General Public License v3.0 UpdatedJul 15, 2021 -
statistic Public
Forked from Kensuke-Hinata/statisticcollecting books, papers and docs.
UpdatedJun 30, 2021 -
single-cell-tutorial Public
Forked from theislab/single-cell-tutorialSingle cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Jupyter Notebook UpdatedJun 28, 2021 -
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cscMap Public
Forked from xryanglab/cscMapcscMap is a bioinformatics pipeline to search for the RNA chimeras resulted from fusions of the transcripts encoded by the two opposite DNA strands.
Python UpdatedJun 23, 2021 -
long_read_circRNA Public
Forked from omiics-dk/long_read_circRNACircRNA detection in nanopore data
Shell MIT License UpdatedJun 23, 2021 -
python-genomics Public
Forked from brianpenghe/python-genomicsA set of files to do genomics analysis on python
Jupyter Notebook UpdatedApr 22, 2021 -
Seurat3-plus Public
Forked from brianpenghe/Seurat3-plusA set of R codes to make Seurat3 running easier
R UpdatedApr 20, 2021 -
hmmlearn Public
Forked from hmmlearn/hmmlearnHidden Markov Models in Python, with scikit-learn like API
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 16, 2021 -
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bustools Public
Forked from BUStools/bustoolsTools for working with BUS files
C BSD 2-Clause "Simplified" License UpdatedMar 30, 2021 -
sicelore Public
Forked from ucagenomix/siceloreSingle Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
Perl MIT License UpdatedMar 30, 2021 -
coreutils Public
Forked from coreutils/coreutilsupstream mirror
C GNU General Public License v3.0 UpdatedMar 28, 2021 -
cheatsheets Public
Forked from rstudio/cheatsheetsRStudio Cheat Sheets
TeX Creative Commons Attribution 4.0 International UpdatedMar 22, 2021 -
PHATE Public
Forked from KrishnaswamyLab/PHATEPHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
Python GNU General Public License v2.0 UpdatedMar 22, 2021 -
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CIRI-long Public
Forked from bioinfo-biols/CIRI-longCircular RNA Identification for Nanopore Sequencing
Python MIT License UpdatedMar 9, 2021 -
gffutils Public
Forked from daler/gffutilsGFF and GTF file manipulation and interconversion
Python MIT License UpdatedJan 26, 2021 -
TALON Public
Forked from mortazavilab/TALONTechnology agnostic long read analysis pipeline for transcriptomes
Python MIT License UpdatedDec 29, 2020 -
scRNA.seq.course Public
Forked from hemberg-lab/scRNA.seq.courseAnalysis of single cell RNA-seq data course
TeX GNU General Public License v3.0 UpdatedDec 11, 2020