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Wiki.js | A modern and powerful wiki app built on Node.js
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Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
Cloud agnostic genomics analysis, scientific computation and storage platform
SDK for GPU accelerated genome assembly and analysis
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more
FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding
A terminal-to-gif recorder minus the headaches.
Deis v1, the CoreOS and Docker PaaS: Your PaaS. Your Rules.
For original Nature Biotechnology Publication (Q1 2012)
Models and APIs for Genomic data. RETIRED 2018-01-24
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
HTTP API design guide extracted from work on the Heroku Platform API
Scheduler (HTTP API and webapp) for running Mesos tasks—long running processes, one-off tasks, and scheduled jobs. #hubspot-open-source
[Historical] Reproducible Analyses for Bioinformatics
Distributed reliable key-value store for the most critical data of a distributed system
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
A general-purpose tool for dynamic report generation in R
Production-Grade Container Scheduling and Management