Histone Modification Experiment (code only) This repository contains the code for running epigenetics analysis using various data mining algorithms.
Loadfiles.py performs the preprocessing of the loaded track data and overlay them with gene annotations from TAIR database
mdata.Madata is the class which encapsulate "experiements" objectcs.
In order to find the function-specfic patterns, we need to addlabels first and then call the calcPScores
The final result will be stored in obj.PScores
We apply the wavelete transformation for series like data and cluster using Affinity Propagation. Each centroid is used as the "signature" shape for histone modfiication series.