Starred repositories
Toolset for SV simulation, comparison and filtering
Structural variant and indel caller for mapped sequencing data
Tools for fast and flexible genome assembly scaffolding and improvement
base-accurate DNA sequence alignments using WFA and mashmap3
A quality control analysis tool for high throughput sequencing data
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
The second version of the Kraken taxonomic sequence classification system
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
Sequence correction provided by ONT Research
De novo assembler for single molecule sequencing reads using repeat graphs
A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
PrimerServer2: a high-throughput primer design and specificity-checking platform
Nanopore raw signal repeat detection pipeline
Nano2NGS: A framework for converting long-read sequencing data into NGS-liked mode for targeted mutation and metagenomic data analysis
A method for detecting targeted STR typing based on nanopore sequencing data
software tools for haplotype assembly from sequence data
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
User-friendly Desktop Client App for AI Models/LLMs (GPT, Claude, Gemini, Ollama...)
Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
A single molecule sequence assembler for genomes large and small.