Skip to content

Issues: wwood/CoverM

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

56 Open 103 Closed
56 Open 103 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Filtering by MapQ
#219 opened Jul 13, 2024 by SDmetagenomics
Question abount the genome module of coverm
#215 opened Jun 5, 2024 by quliping
1
"relative_abundance" option was not provided in "contig" mode
#211 opened May 3, 2024 by microjishuai
1
Estimating the abundances of multiple viral genomes
#210 opened Apr 6, 2024 by asierFernandezP
5
Request -- use https://crates.io/crates/which for external command checking?
#207 opened Mar 15, 2024 by nickp60
6
How to output bam file after trimmed_mean function?
#206 opened Mar 9, 2024 by Harper19
2
Error when using sharded flag
#205 opened Mar 6, 2024 by AvriXue
pay attention to skani accuracy below 85% ANI
#199 opened Jan 19, 2024 by jianshu93
4
Filter based on minimum horizontal coverage
#195 opened Jan 12, 2024 by ntromas
2
coverm seems only used the forward reads
#194 opened Dec 24, 2023 by quliping
5
[Enhancement] Improving Multi-sample Parallelisation Strategy
#193 opened Dec 23, 2023 by erfanshekarriz
2
[Documentation] Example tutorial walkthroughs and test data
#192 opened Dec 22, 2023 by erfanshekarriz
What is the formula for function "Mean"
#191 opened Dec 19, 2023 by Harper19
1
How change the path of tmp files
#190 opened Dec 12, 2023 by microbial-cookie
1
What is the meaning about "--min-read-percent-identity "
#189 opened Nov 17, 2023 by weiguanyue
1
coverm contig Intermediate file
#187 opened Nov 3, 2023 by PonderLi
defining an output file
#184 opened Aug 30, 2023 by Sabrin2020
7
tpm and --exclude-supplementary
#183 opened Aug 27, 2023 by PonderLi
paper cut: define clsuter methods possibilities properly
#180 opened Aug 5, 2023 by wwood
Usage of --sharded
#172 opened Jun 18, 2023 by Rridley7
[2023-06-04T07:45:16Z INFO coverm::contig] In sample 'cdhit_rep_seq.fna/SRR13083091_1.fq.gz', found 0 reads mapped out of 0 total (NaN%)
#169 opened Jun 4, 2023 by JiaLonghao1997
3
CoverM to assess genomes relative proportion in Metatranscriptomics data?
#167 opened Jun 2, 2023 by JSSaini
1
--contig-end-exclusion doesn't work with -m not set to mean
#163 opened Apr 19, 2023 by alexcritschristoph
2
Zero covered bases and mean coverage but non-zero reads mapping
#162 opened Apr 7, 2023 by bck243
Calculations of min-read-percent-identity and min-read-aligned-length
#161 opened Mar 19, 2023 by Rridley7
2
ProTip! Adding no:label will show everything without a label.