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University of Virginia
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microSAD Public
An open-source R package designed for testing Species Abundance Distribution (SAD) models within microbial communities.
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FastANI-Rebuttal Public
R Code to reproduce results in the Nature Communication paper: Murray, C.S., Gao, Y. & Wu, M. Re-evaluating the evidence for a universal genetic boundary among microbial species. Nat Commun 12, 405…
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Phyla_AMPHORA Public
A Phylum-specific Automated Phylogenomic Inference Pipeline for Bacterial Sequences.
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AMPHORA2 Public
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.