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  1. UFISH-Team/U-FISH UFISH-Team/U-FISH Public

    Deep learning based spot detection for FISH images.

    Jupyter Notebook 17 5

  2. Spatialspots Spatialspots Public

    This document explains how to use three functions to calculate kernel density estimation (KDE), Moran's I statistic, Correlation, Wasserstein distance.

    Python 3 1

  3. MGEscore MGEscore Public

    CellType Definition by Marker Genes Expression

    Python 2 1

  4. SpatiaInSituPlots SpatiaInSituPlots Public

    Spatial InSitu plot including gene expression and cell type

    Jupyter Notebook 2

  5. MicroimageAnalysis MicroimageAnalysis Public

    measure fluorescence intensities of Hoechst and CENP-F in the nuclei

    Jupyter Notebook

  6. SpatialImmunoCircle SpatialImmunoCircle Public

    Computing spatial variations around specific cell clusters in the immune microenvironment

    Jupyter Notebook 1