Commits

Commits on Nov 7, 2023

update walkthrough script
widdowquinn
committedNov 7, 2023
remove old walkthrough test folder
widdowquinn
committedNov 7, 2023
pin specific bioconda build of mummer
widdowquinn
committedNov 7, 2023
copyright statement changes, remove alphabet from Biopython Seq
widdowquinn
committedNov 7, 2023
unpin biopython version requirement
widdowquinn
committedNov 7, 2023
update pre-commit and minor docstring changes
widdowquinn
committedNov 7, 2023

Commits on Dec 18, 2020

Merge pull request #56 from nick-youngblut/diagnostic_primers
widdowquinn
committedDec 18, 2020
imports should follow PEP8
widdowquinn
committedDec 18, 2020
Update primer3_parser.py
widdowquinn
committedDec 18, 2020
imports should follow PEP8
widdowquinn
committedDec 18, 2020
imports should follow PEP8
widdowquinn
committedDec 18, 2020
imports should follow PEP8
widdowquinn
committedDec 18, 2020
imports should follow PEP8
widdowquinn
committedDec 18, 2020
imports should follow PEP8
widdowquinn
committedDec 18, 2020
imports should follow PEP8
widdowquinn
committedDec 18, 2020
imports should follow PEP8
widdowquinn
committedDec 18, 2020
import order should follow PEP8
widdowquinn
committedDec 18, 2020
added ArgumentDefaultsHelpFormatter to all parsers
Nicholas Youngblut
committedDec 18, 2020

Commits on Dec 17, 2020

update pre-commit hook and biopython version pin
Leighton Pritchard
committedDec 17, 2020

Commits on Jun 7, 2019

reduce code complexity in classify.py
widdowquinn
committedJun 7, 2019

Commits on Jun 6, 2019

reduce code complexity in subcmd_config.py
widdowquinn
committedJun 6, 2019
disable pylint for Sphinx docs configuration
widdowquinn
committedJun 6, 2019
quote subcommand call in tools.py for safety
widdowquinn
committedJun 6, 2019
reduce code complexity in test_pdpdata.py
widdowquinn
committedJun 6, 2019
update docstring in mafft_align_sequences()
widdowquinn
committedJun 6, 2019
reduce code complexity in subcmd_extract.py
widdowquinn
committedJun 6, 2019
reduce code complexity in extract.py
widdowquinn
committedJun 6, 2019
convert two min/max arguments to a single limits argument
widdowquinn
committedJun 6, 2019
exclude VS Code config files
widdowquinn
committedJun 6, 2019
reduce complexity in extract.py
widdowquinn
committedJun 6, 2019
reduce function complexity in extract.py
widdowquinn
committedJun 6, 2019
fix minor code smells caught by pylint/codefactor.io
widdowquinn
committedJun 6, 2019

Commits on Jun 5, 2019

correct for pyline errors in primersearch.py
widdowquinn
committedJun 5, 2019
disable pylint error E0202 for JSON encoding
widdowquinn
committedJun 5, 2019
refactor subcmd_filter() function and update tests
widdowquinn
committedJun 5, 2019