update docstring in mafft_align_sequences()

widdowquinn · Jun 6, 2019 · ab9a4f7 · ab9a4f7
1 parent fdb7ae0
commit ab9a4f7
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/diagnostic_primers/scripts/subcommands/subcmd_extract.py b/diagnostic_primers/scripts/subcommands/subcmd_extract.py
@@ -110,6 +110,8 @@ def mafft_align_sequences(args, logger, amplicon_fasta, outdir):
 
  :param args: Namespace of command-line arguments
  :param logger: logging object
+ :param amplicon_fasta: dictionary of amplicon sequences keyed by filename
+ :param outdir: path to output directory
  """
  # If we are in recovery mode, we are salvaging output from a previous
  # run, and do not necessarily need to rerun all the jobs. In this case,