Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples …

…into user/mjh/OM4_05_preprocessing Conflicts: ice_ocean_SIS2/OM4_05/preprocessing/Makefile ice_ocean_SIS2/OM4_05/preprocessing/md5sums.txt
whuiskamp · Feb 8, 2018 · 9bb7fca · 9bb7fca
2 parents 0b355f8 + a7b2723
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diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/.datasets b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/.datasets
@@ -0,0 +1 @@
+../../../.datasets
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/MOM_channels_global_025 b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/MOM_channels_global_025
@@ -0,0 +1,9 @@
+! This file specifies restricted channel widths in MOM. The order is:
+! [U|V]_width, min_longitude, max_longitude, min_latitude, max_latitude, width
+
+U_width, -5.9, -5.4, 35.8, 36.2, 12000.0 ! Gibraltar
+U_width, 26.4, 26.8, 40.4, 40.6, 5000.0 ! Dardanelles
+
+V_width, 28.8, 29.4, 41.1, 41.2, 2500.0 ! Bosporus - should be 1km wide.
+V_width, 43.25, 43.5, 12.6, 12.8, 10000.0 ! Red Sea, Bab-el-Mendeb
+V_width, 141.5, 141.7, 52.0, 52.15, 2500.0 ! Between Sakhalin & Russia
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/WOA05_pottemp_salt.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/WOA05_pottemp_salt.nc
@@ -0,0 +1 @@
+.datasets/obs/WOA05_pottemp_salt.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/analysis_vgrid_lev35.v1.cdl b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/analysis_vgrid_lev35.v1.cdl
@@ -0,0 +1,26 @@
+netcdf analysis_vgrid_lev35.v1 {
+dimensions:
+ zt = 35 ;
+ zw = 36 ;
+variables:
+ double zw(zw) ;
+ zw:comment = "Used for diagnostics only, based on WOA09 standard levels" ;
+ zw:long_name = "Diagnostic depth coordinate interface position" ;
+ zw:units = "m" ;
+ double zt(zt) ;
+ zt:comment = "Used for diagnostics only, based on WOA09 standard levels" ;
+ zt:long_name = "Diagnostic depth coordinate level position" ;
+ zt:units = "m" ;
+
+// global attributes:
+ :filename = "analysis_vgrid_lev35.v1.nc" ;
+data:
+
+ zw = 0, 5, 15, 25, 40, 62.5, 87.5, 112.5, 137.5, 175, 225, 275, 350, 450, 
+ 550, 650, 750, 850, 950, 1050, 1150, 1250, 1350, 1450, 1625, 1875, 2250, 
+ 2750, 3250, 3750, 4250, 4750, 5250, 5750, 6250, 6750 ;
+
+ zt = 2.5, 10, 20, 30, 50, 75, 100, 125, 150, 200, 250, 300, 400, 500, 600, 
+ 700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1500, 1750, 2000, 2500, 
+ 3000, 3500, 4000, 4500, 5000, 5500, 6000, 6500 ;
+}
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/analysis_vgrid_lev35.v1.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/analysis_vgrid_lev35.v1.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/atmos_mosaic_tile1Xland_mosaic_tile1.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/atmos_mosaic_tile1Xland_mosaic_tile1.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/atmos_mosaic_tile1Xland_mosaic_tile1.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/atmos_mosaic_tile1Xocean_mosaic_tile1.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/atmos_mosaic_tile1Xocean_mosaic_tile1.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/atmos_mosaic_tile1Xocean_mosaic_tile1.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/geothermal_davies2013_v1.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/geothermal_davies2013_v1.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/geothermal_davies2013_v1.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/grid_spec.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/grid_spec.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/grid_spec.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/hycom1_75_800m.cdl b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/hycom1_75_800m.cdl
@@ -0,0 +1,35 @@
+netcdf hycom1_75_800m {
+dimensions:
+ layers = 75 ;
+ interfaces = 76 ;
+variables:
+ double dz(layers) ;
+ dz:long_name = "z* coordinate level thickness" ;
+ dz:units = "m" ;
+ double sigma2(interfaces) ;
+ sigma2:long_name = "Interface target potential density referenced to 2000 dbars" ;
+ sigma2:units = "kg/m3" ;
+data:
+
+ dz = 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2.01, 2.01, 
+ 2.01, 2.02, 2.03, 2.05, 2.07, 2.09, 2.13, 2.18, 2.24, 2.32, 2.42, 2.56, 
+ 2.73, 2.95, 3.23, 3.57, 3.99, 4.52, 5.16, 5.95, 6.91, 8.06, 9.46, 11.13, 
+ 13.13, 15.5, 18.32, 21.65, 25.56, 30.16, 35.54, 41.81, 49.1, 57.56, 
+ 67.34, 78.63, 91.61, 106.51, 123.58, 143.08, 165.32, 190.61, 219.33, 
+ 251.88, 288.68, 330.23, 377.05, 429.71, 488.84, 555.13, 629.33, 712.25, 
+ 804.76 ;
+
+ sigma2 = 1010, 1014.3034, 1017.8088, 1020.843, 1023.5566, 1025.813, 
+ 1027.0275, 1027.9114, 1028.6422, 1029.2795, 1029.852, 1030.3762, 
+ 1030.8626, 1031.3183, 1031.7486, 1032.1572, 1032.5471, 1032.9207, 
+ 1033.2798, 1033.6261, 1033.9608, 1034.2519, 1034.4817, 1034.6774, 
+ 1034.8508, 1035.0082, 1035.1533, 1035.2886, 1035.4159, 1035.5364, 
+ 1035.6511, 1035.7608, 1035.8661, 1035.9675, 1036.0645, 1036.1554, 
+ 1036.2411, 1036.3223, 1036.3998, 1036.4739, 1036.5451, 1036.6137, 
+ 1036.68, 1036.7441, 1036.8062, 1036.8526, 1036.8874, 1036.9164, 
+ 1036.9418, 1036.9647, 1036.9857, 1037.0052, 1037.0236, 1037.0409, 
+ 1037.0574, 1037.0738, 1037.0902, 1037.1066, 1037.123, 1037.1394, 
+ 1037.1558, 1037.1722, 1037.1887, 1037.206, 1037.2241, 1037.2435, 
+ 1037.2642, 1037.2866, 1037.3112, 1037.3389, 1037.3713, 1037.4118, 
+ 1037.475, 1037.6332, 1037.8104, 1038 ;
+}
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/hycom1_75_800m.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/hycom1_75_800m.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/land_mask.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/land_mask.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/land_mask.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/land_mosaic_tile1Xocean_mosaic_tile1.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/land_mosaic_tile1Xocean_mosaic_tile1.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/land_mosaic_tile1Xocean_mosaic_tile1.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/layer_coord.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/layer_coord.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ncar_precip.clim.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ncar_precip.clim.nc
@@ -0,0 +1 @@
+.datasets/CORE/NYF_v2.0/ncar_precip.clim.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ncar_rad.clim.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ncar_rad.clim.nc
@@ -0,0 +1 @@
+.datasets/CORE/NYF_v2.0/ncar_rad.clim.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ocean_hgrid.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ocean_hgrid.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/ocean_hgrid.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ocean_mask.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ocean_mask.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/ocean_mask.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ocean_mosaic.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ocean_mosaic.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/ocean_mosaic.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ocean_topog.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/ocean_topog.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/ocean_topog.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/q_10_mod.clim.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/q_10_mod.clim.nc
@@ -0,0 +1 @@
+.datasets/CORE/NYF_v2.0/q_10_mod.clim.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/runoff.daitren.clim.v2011.02.10a.1440x1080.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/runoff.daitren.clim.v2011.02.10a.1440x1080.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/runoff.daitren.clim.v2011.02.10a.1440x1080.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/salt_restore.v20140616.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/salt_restore.v20140616.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/salt_restore.v20140616.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/seawifs_1998-2006_smoothed_2X.v20140616.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/seawifs_1998-2006_smoothed_2X.v20140616.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/seawifs_1998-2006_smoothed_2X.v20140616.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/slp.clim.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/slp.clim.nc
@@ -0,0 +1 @@
+.datasets/CORE/NYF_v2.0/slp.clim.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/t_10_mod.clim.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/t_10_mod.clim.nc
@@ -0,0 +1 @@
+.datasets/CORE/NYF_v2.0/t_10_mod.clim.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/tidal_amplitude.v20140616.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/tidal_amplitude.v20140616.nc
@@ -0,0 +1 @@
+.datasets/Baltic_OM4_025/tidal_amplitude.v20140616.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/topog.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/topog.nc
@@ -0,0 +1 @@
+ocean_topog.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/u_10_mod.clim.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/u_10_mod.clim.nc
@@ -0,0 +1 @@
+.datasets/CORE/NYF_v2.0/u_10_mod.clim.nc
diff --git a/ice_ocean_SIS2/Baltic_OM4_025/INPUT/v_10_mod.clim.nc b/ice_ocean_SIS2/Baltic_OM4_025/INPUT/v_10_mod.clim.nc
@@ -0,0 +1 @@
+.datasets/CORE/NYF_v2.0/v_10_mod.clim.nc