MOM6: Changes related to restructuring MOM.F90

  Made several changes to MOM6 that change the MOM_parameter_doc.all files and
the available_diags files, including obsoleting MASK_MASSLESS_TRACERS and
relocating various predia and preale diagnostics into the respective subroutines
which changes the order of entries in the available diags files.  All answers
are bitwise identical, but the MOM_parameter_doc.all and available_diags files
have changed.
MOM6 commit Hallberg-NOAA/MOM6@653f770

coupled_AM2_LM3_SIS/CM2G63L/MOM_parameter_doc.all

@@ -361,9 +361,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

coupled_AM2_LM3_SIS2/AM2_SIS2_MOM6i_1deg/MOM_parameter_doc.all

@@ -361,9 +361,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

coupled_AM2_LM3_SIS2/Concurrent_ice_1deg/MOM_parameter_doc.all

@@ -361,9 +361,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ice_ocean_SIS2/Baltic/MOM_parameter_doc.all

@@ -361,9 +361,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/MOM_parameter_doc.all

@@ -378,9 +378,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise
@@ -404,8 +401,6 @@ SPONGE = False ! [Boolean] default = False
  ! If true, sponges may be applied anywhere in the domain.
  ! The exact location and properties of those sponges are
  ! specified from MOM_initialization.F90.
-MASK_TRACERS_IN_MASSLESS_LAYERS = False ! [Boolean] default = False
- ! If true, tracers will be masked out in massless layers.
 
 ! === module MOM_coord_initialization ===
 COORD_CONFIG = "file" !

ice_ocean_SIS2/OM4_025/MOM_parameter_doc.all

@@ -383,9 +383,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ice_ocean_SIS2/OM4_05/MOM_parameter_doc.all

@@ -383,9 +383,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ice_ocean_SIS2/SIS2/MOM_parameter_doc.all

@@ -361,9 +361,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ice_ocean_SIS2/SIS2_bergs_cgrid/MOM_parameter_doc.all

@@ -361,9 +361,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ice_ocean_SIS2/SIS2_cgrid/MOM_parameter_doc.all

@@ -361,9 +361,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

land_ice_ocean_LM3_SIS2/OM_360x320_C180/MOM_parameter_doc.all

@@ -371,9 +371,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ocean_only/benchmark/MOM_parameter_doc.all

@@ -379,9 +379,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ocean_only/global_ALE/hycom/MOM_parameter_doc.all

@@ -378,9 +378,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise

ocean_only/global_ALE/layer/MOM_parameter_doc.all

@@ -376,9 +376,6 @@ AGE_IC_FILE = "" ! default = ""
  ! found, or an empty string for internal initialization.
 AGE_IC_FILE_IS_Z = False ! [Boolean] default = False
  ! If true, AGE_IC_FILE is in depth space, not layer space
-MASK_MASSLESS_TRACERS = False ! [Boolean] default = False
- ! If true, the tracers are masked out in massless layer.
- ! This can be a problem with time-averages.
 TRACERS_MAY_REINIT = False ! [Boolean] default = False
  ! If true, tracers may go through the initialization code
  ! if they are not found in the restart files. Otherwise