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bootstrap K3s over SSH in < 60s 🚀

Go 6,064 371 Updated Jul 14, 2024

popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.

R 24 7 Updated May 2, 2024

Bostongene cell deconvolution algorithm from RNAseq

Jupyter Notebook 47 7 Updated Jan 15, 2024

An interactive explorer for single-cell transcriptomics data

JavaScript 602 114 Updated Jul 19, 2024

Packaging common Seurat analysis tasks for reproducible research

R 4 1 Updated Nov 17, 2022

Repo containing analysis for scMET manuscript

HTML 2 1 Updated Feb 26, 2021

An R 📦 for fast and flexible scDNA methylation analysis

R 1 2 Updated Apr 18, 2022

Bayesian modelling of DNA methylation heterogeneity at single-cell resolution

R 20 1 Updated Jan 26, 2024

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Python 2,651 489 Updated Jul 23, 2024

run ssh within your docker container

Dockerfile 28 32 Updated Feb 18, 2022

A docker image based in ubuntu to run docker containers inside docker containers

Dockerfile 161 75 Updated Jul 18, 2024

MathWorks container images on Docker Hub

Dockerfile 34 10 Updated Jun 3, 2024

Code related to scRNA analysis using the scAmpi workflow

R 23 8 Updated Jul 30, 2024

Codes for the manuscript: Prediction of biomarkers and therapeutic combinations for anti-PD-1 immunotherapy using the global gene network association

5 2 Updated Nov 19, 2021

Code and data used in https://doi.org/10.1101/2021.08.01.454656

Jupyter Notebook 49 14 Updated May 2, 2022

Quantifying metabolism activity at the single-cell resolution

R 101 37 Updated Feb 8, 2024

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

R 181 51 Updated Jul 19, 2024

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

R 1 Updated May 20, 2022

Install alphafold on the local machine, get out of docker.

Python 97 33 Updated Nov 17, 2021

Bitfusion with Kubernetes Integration Support

Go 51 23 Updated Nov 3, 2023

Melbourne Bioinformatics documentation in markdown format

HTML 96 77 Updated Jan 25, 2024

Helm chart and docker image for CrushFTP server.

Shell 7 7 Updated Apr 21, 2022

pytorch implementation for "PointNet: Deep Learning on Point Sets for 3D Classification and Segmentation" https://arxiv.org/abs/1612.00593

Python 2,086 619 Updated Mar 23, 2023

OpenSpecimen is an open source biobanking/biorepository management software developed by Krishagni Solutions (India).

Java 62 47 Updated Jul 30, 2024

Storage Orchestration for Kubernetes

Go 12,163 2,671 Updated Jul 30, 2024

Open source hyperconverged infrastructure (HCI) software

Go 3,689 310 Updated Jul 30, 2024
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