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dindnf dev

We had released v1.0.0 version. dockerindocker and nextflow for data analysis

License

Dockerfile was a ideal method for docker image. Nextflow was an easy way for bioinformatic analysis based on docker images. Here bulid a Dockefile with docker and nextflow.

It's based on Alpine Linux 3.10 image, which is a very small Linux distribution, which show more safety as its small size. The Dockerfile will update often depend on the docker and nextflow version. For its most utility use, nf-core project will be most forked. Summary info:

  • OS: Alpine Linux 3.10
  • docker: 19.03.1
  • nextflow: 19.04.1.5072

WI lists for nextflow/nf-core

DNA

  • eager:A fully reproducible and state of the art ancient DNA analysis pipeline.
  • bcellmagic:B cell repertoire analysis pipeline with immcantation framework.
  • bactmap:A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences.
  • h

RNA

  • ampliseq:16S rRNA amplicon sequencing analysis workflow using QIIME2.
  • rnaseq:RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control.
  • smrnaseq:Analysis pipeline for small-RNA sequencing data.
  • HH

PROTEIN

  • mhcquant:Identify and quantify peptides from mass spectrometry raw data
  • JH
  • HG
  • HH

You can pull this image at docker hub, just 'docker pull weinformatics/dindnf:v1.0.0'