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Friedrich Schiller University Jena - Aquatic Geomicrobiology
- Jena, Germany
- https://www.exploringmicrobes.science
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smk_16S_ampseq Public
Snakemake workflow for the processing of 16S rRNA gene-derived amplicon sequencing data
Python GNU General Public License v3.0 UpdatedDec 22, 2023 -
wegnerce.github.io Public
Repository for my private webage exploringmicrobes.science
HTML UpdatedNov 6, 2023 -
smk_slurm_profile Public
Snakemake profile for SLURM
Python GNU General Public License v3.0 UpdatedNov 6, 2023 -
smk_rnaseq Public
Snakemake workflow for the processing of RNAseq data
Python GNU General Public License v3.0 UpdatedNov 2, 2023 -
smk_markerseq Public
A Snakemake workflow for marker-gene-derived amplicon sequencing data
Python GNU General Public License v3.0 UpdatedOct 20, 2023 -
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smk_emseq Public
Snakemake workflow for the processing of EMseq data
Python GNU General Public License v3.0 UpdatedJul 3, 2023 -
peng_et_al_2018 Public
Details about metatranscriptome data processing in Peng et al., 2018 https://doi.org/10.1186/s40168-018-0546-9
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taxomias Public
an easy to use implementation of the NCBI taxonomy database for daily use
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VisualizationMethods Public
Forked from lindsayrutter/VisualizationMethodsReproducible scripts for creating figures in differential expression visualization paper
R UpdatedFeb 7, 2019 -
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ampliconian Public
Plaground for scripting related to amplicon data analysis
Shell UpdatedOct 11, 2017