do not add suffixes to the query names when it is split in SAM format

waveygang · Jun 24, 2024 · 492af26 · 492af26
1 parent 59f12f6
commit 492af26
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/align/include/computeAlignments.hpp b/src/align/include/computeAlignments.hpp
@@ -482,7 +482,7 @@ typedef atomic_queue::AtomicQueue<std::string*, 1024, nullptr, true, true, false
  }
 
  // To distinguish split alignment in SAM output format (currentRecord.rankMapping == 0 to avoid the suffix there is just one alignment for the query)
- const std::string query_name_suffix = param.split && param.sam_format ? "_" + std::to_string(rec->currentRecord.rankMapping) : "";
+ //const std::string query_name_suffix = param.split && param.sam_format ? "_" + std::to_string(rec->currentRecord.rankMapping) : "";
 
  wflign::wavefront::WFlign* wflign = new wflign::wavefront::WFlign(
  param.wflambda_segment_length,
@@ -523,7 +523,7 @@ typedef atomic_queue::AtomicQueue<std::string*, 1024, nullptr, true, true, false
  !param.sam_format,
  param.no_seq_in_sam);
  wflign->wflign_affine_wavefront(
- rec->currentRecord.qId + query_name_suffix,
+ rec->currentRecord.qId,// + query_name_suffix,
  queryRegionStrand,
  rec->queryTotalLength,
  rec->queryStartPos,