Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

MMseqs2: ultra fast and sensitive search and clustering suite

WebGL protein viewer

AlphaFold2 non-docker setup

AutoDock Vina

Open source code for AlphaFold.

Hycco is an HMM based method to estimate hybrid chromosomal crossover points using distinguising SNPs from two parental genotypes

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

Developed at Biopic (PKU) in 2012-2013 for probing meiotic recombination and aneuploidy by analyzing the single cell sequencing data from sperm and oocytes, includes mapping the reads to the refere…

NLR-Annotator upload

小白加速全球唯一发布地址

RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq and DNA-Seq data.

De-Novo Repeat Discovery Tool

Genomic Association Tester

The tRNA adaptation index

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

A place to publish data-vizes

bedtools - the swiss army knife for genome arithmetic

Phylogenetic orthology inference for comparative genomics

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

Code and manuscript files for Aaron and Karsten's deconvolution paper.

🎨 A colour picker tool for Shiny and for selecting colours in plots (in R)

🔬 Analysis and visualization of Droplet Digital PCR data in R and on the web

Code and manuscript files for Aaron's spike-in manuscript.

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs