Open source code for AlphaFold 2.

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Phylogenetic orthology inference for comparative genomics

Gene Set Enrichment Analysis in Python

Bioinformatics code libraries and scripts

Tools for handling Unique Molecular Identifiers in NGS data sets

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

Tools for processing UMI RNA-tag data

Assembly by Reduced Complexity (ARC)

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

Genomic Association Tester

microRNA PREdiction From small RNA-seq data

RNA editing discovery from NGS data.

Fusarium Genomics

Script collection

Hycco is an HMM based method to estimate hybrid chromosomal crossover points using distinguising SNPs from two parental genotypes