Materials and presentation for the 2023 ISB Microbiome course.

Assembly and intrahost/low-frequency variant calling for viral samples

Versatile open-source tool for microbiome analysis

INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomic surveillance

Viral Evolution ReconStructiOn (VERSO). The manuscript of the method is available at: https://www.cell.com/patterns/fulltext/S2666-3899(21)00022-2

Resolving Species Level Classification Using Emu

single sample processing

Publicly available nextclade datasets

Interactive web apps created using geemap and streamlit

🖼️ Create beautiful maps from OpenStreetMap data in a streamlit webapp

displays multiple genomic sequences in the form of a tube map

Ultrafast Sample Placement on Existing Trees

HELEN (Heralding Emerging Lineages in Epistatic Networks)

A program that generates barcodes for sequencing adapters

Design specific primers genome-widely.

Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).

A collection of Python packages for geospatial analysis with binder-ready notebook examples

A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment

Tutorial of geospatial data processing using python 用python分析时空数据的教程(in Chinese and English )

A Python package for interactive geospatial analysis and visualization with Google Earth Engine.

Streamlit Component for rendering Folium maps

Convert AI papers to GUI，Make it easy and convenient for everyone to use artificial intelligence technology。让每个人都简单方便的使用前沿人工智能技术

Sequana: a set of Snakemake NGS pipelines

Easy Amplicon data analysis pipeline

Video+code lecture on building nanoGPT from scratch