Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

LiveCoMS GROMACS Tutorials Paper

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Uniform sampling of transmission trees for a fixed pathogen phylogeny

IPython Cookbook, Second Edition, by Cyrille Rossant, Packt Publishing 2018

Workshop teaching QMMM using Amber

OpenMM is a toolkit for molecular simulation using high performance GPU code.

BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data

A collection of small scripts and utilities that would otherwise float around in other repositories

Interface for people to use my model which predicts which techniques one should use to solve a competitive programming problem to get an AC

100-Days-Of-ML-Code中文版

Remote protein homology detection suite.

Official website for RECON - The R Epidemics CONsortium

Public/backup repository of the gromacs molecular simulation toolkit

Biomolecular simulation trajectory/data analysis.

Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)

Evolutionary couplings from protein and RNA sequence alignments

A machine translation reading list maintained by Tsinghua Natural Language Processing Group

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence

A practical approach to learning machine learning.

Public data for the book Python for Bioinformatics

clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)

Fully convolutional neural networks for protein residue-residue contact prediction

Solvation Structure and Thermodynamic Mapping

tests of stationarity, reversibility, and homogeneity for sequence alignments

Fast hierarchical clustering routines for R and Python.