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1. Noble-Lab/HiCFoundation Noble-Lab/HiCFoundation Public

   HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

   Python 10

2. kiharalab/DiffModeler kiharalab/DiffModeler Public

   DiffModeler: a diffusion model based protein complex structure modeling tool.

   Python 44 4

3. kiharalab/CryoREAD kiharalab/CryoREAD Public

   CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

   Python 28 4

4. maple-research-lab/AdPE maple-research-lab/AdPE Public

   code for "AdPE: Adversarial Positional Embeddings for Pretraining Vision Transformers via MAE+"

   Python 4

5. kiharalab/DAQ kiharalab/DAQ Public

   DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps

   C 14 1

6. maple-research-lab/CaCo maple-research-lab/CaCo Public

   CaCo: Both Positive and Negative Samples are Directly Learnable via Cooperative-adversarial Contrastive Learning

   Python 17 4