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@wahlby-lab

Wählby Lab

Quantitative Microscopy group with focus on developing digital image analysis and deep learning methods and tools for applications in life science.

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  1. spage2vec spage2vec Public

    Jupyter Notebook 13 4

  2. graph-iss graph-iss Public

    Graph-based Decoding for In Situ Sequencing

    Jupyter Notebook 10 4

Repositories

Showing 10 of 11 repositories
  • is3g Public

    In Situ Sequencing Segmentation

    wahlby-lab/is3g’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 2 1 Updated Jul 2, 2024
  • Points2Regions Public

    Simple tool for clustering spatial points with categorical labels.

    wahlby-lab/Points2Regions’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Jun 4, 2024
  • analytical-enrichment-test Public

    Analytical neighborhood enrichment test

    wahlby-lab/analytical-enrichment-test’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 22, 2024
  • napari-points2regions Public

    A napari plugin for Points2Regions

    wahlby-lab/napari-points2regions’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 26, 2024
  • ISS_Decoding_colab Public

    In Situ Sequencing decoding compatible with Google Colab

    wahlby-lab/ISS_Decoding_colab’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Sep 6, 2023
  • spage2vec_heart Public

    spage2vec, developmental human heart, in situ sequensing

    wahlby-lab/spage2vec_heart’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated May 29, 2022
  • spage2vec Public
    wahlby-lab/spage2vec’s past year of commit activity
    Jupyter Notebook 13 Apache-2.0 4 1 0 Updated Jul 1, 2021
  • ML-celltype-neighbor Public

    Our workflow for our paper "“Machine learningfor cell classification and neighborhood analysis in glioma tissue"

    wahlby-lab/ML-celltype-neighbor’s past year of commit activity
    Python 3 GPL-3.0 1 0 0 Updated Apr 30, 2021
  • InSilicoTFM Public

    🧫 Framework for predicting cellular traction forces with Deep Learning. 🤖

    wahlby-lab/InSilicoTFM’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Feb 19, 2021
  • graph-iss Public

    Graph-based Decoding for In Situ Sequencing

    wahlby-lab/graph-iss’s past year of commit activity
    Jupyter Notebook 10 Apache-2.0 4 0 0 Updated Jul 2, 2020
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