Stars
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the …
Color palette package inspired by National Parks
This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward finding cures for Inflammatory Bowel Disease (IBD). To lear…
Virus Identification By iteRative ANnoTation
A playbook for systematically maximizing the performance of deep learning models.
Course packets for Bacterial Genetics and Physiology. Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
PokeWilds - A Gen 2 Game/Engine using libGDX
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
I am trying to describe complex matters in simple doodles!
Deep functional residue identification
Python Package to read, parse, convert *.1sc files generated by Bio-Rad Quantity One software.
Get protein embeddings from protein sequences
Evolutionary velocity with protein language models
Software to search rearrangements in population sequencing data
Experimental evolution of E. coli with exposure to triclosan
Building Osterman Lab implementation of morbidostat
A library for efficient similarity search and clustering of dense vectors.
Prevent PyTorch's `CUDA error: out of memory` in just 1 line of code.
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
command line bioinformatic scripts written in R