LLM Memory system with a graph-vector database

the portable Python dataframe library

A minimal Python library for Apache Arrow, connecting to the Rust arrow crate

Transcription Factor Enrichment Analysis

A rust library for the Zarr storage format for multidimensional arrays and metadata

Performant Pythonic GenomicRanges

Implementation for MatMul-free LM.

A graph deconvolution approach to predict Hi-C contact map from pseudo-bulk scRNA-seq.

Single-cell CO-Optimal TRansport for jointly aligning cells and genomic features of single-cell multi-omic datasets

Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

Tool for plotting sequencing data along genomic coordinates.

All Algorithms implemented in Rust

Yet another Jupyter widget for deck.gl

Interactive barcharts for Jupyter

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

The financial transactions database designed for mission critical safety and performance.

SIMBA: SIngle-cell eMBedding Along with features

Fast Datagrid widget for the Jupyter Notebook and JupyterLab

The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

Genomic Features in Python from BioConductor's AnnotationHub

Better SQL in Jupyter. 📊

[VIS 2024] Integrating Design Guidelines into Large Language Models for Visualization Authoring

A Python library for fast, interactive geospatial vector data visualization in Jupyter.

Observable Plot in Jupyter notebooks and Quarto documents