My own pathogen setting for cloning.
As shown below (In the $HOME (by :echo $HOME):
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On Windows:
git clone --recursive https://github.com/utylee/.vim vimfiles
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On Linux:
git clone --recursive https://github.com/utylee/.vim .vim
After that, copy .vimrc.copyto $HOME/.vimrc
Have fun!!