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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 37 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 10 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 8 2

  4. data-portal-apis data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    Python 1

  5. orcabus orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    Python 3

  6. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 7 4

Repositories

Showing 10 of 122 repositories
  • orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    umccr/orcabus’s past year of commit activity
    Python 3 0 32 5 Updated Jul 22, 2024
  • orca-ui Public
    umccr/orca-ui’s past year of commit activity
    TypeScript 0 MIT 0 1 1 Updated Jul 22, 2024
  • wrapica Public

    A suite of secondary / tertiary functions for running ICA API calls

    umccr/wrapica’s past year of commit activity
    Python 2 GPL-3.0 0 10 0 Updated Jul 21, 2024
  • driver-analysis Public

    Workflow for driver events identification across cohorts of tumours

    umccr/driver-analysis’s past year of commit activity
    R 7 1 1 0 Updated Jul 19, 2024
  • RNA-seq-analysis Public
    umccr/RNA-seq-analysis’s past year of commit activity
    HTML 3 2 0 1 Updated Jul 19, 2024
  • samplesheet-check-backend Public
    umccr/samplesheet-check-backend’s past year of commit activity
    Python 0 0 2 0 Updated Jul 19, 2024
  • htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    umccr/htsget-rs’s past year of commit activity
    Rust 37 MIT 9 17 3 Updated Jul 18, 2024
  • infrastructure Public

    Infrastructure as Code at UMCCR

    umccr/infrastructure’s past year of commit activity
    Python 10 8 13 7 Updated Jul 17, 2024
  • data-portal-status-page Public
    umccr/data-portal-status-page’s past year of commit activity
    TypeScript 0 0 5 0 Updated Jul 17, 2024
  • data-portal-client Public

    UMCCR Data Portal Frontend

    umccr/data-portal-client’s past year of commit activity
    TypeScript 1 1 7 0 Updated Jul 17, 2024
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