Update upp submodule #2213
Update upp submodule #2213
Conversation
Merge remote-tracking branch 'upstream/develop' into upp_HR4
FernandoAndrade-NOAA
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Baseline Updates
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@WenMeng-NOAA @FernandoAndrade-NOAA can we schedule to work on this pr anytime this week? |
@jkbk2004 That would be great! Please let me know any actions from my end. |
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It looks like the test_changes.list was overwritten during the sync, I'm recommitting that as those changes were confirmed to be expected from this update. |
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@zach1221 @BrianCurtis-NOAA FYI getting started on testing this PR |
FernandoAndrade-NOAA
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Ready for Commit Queue
@FernandoAndrade-NOAA Yes, during my syncing process this morning, I was not sure which version of test_changes.list was needed. |
No worries! We should be good to go now, thanks. |
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There were failures with the creation for the Jet: Gaea: |
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@WenMeng-NOAA If a quick fix is not ready, we can reschedule this pr. We will move to #2145. @FernandoAndrade-NOAA @zach1221 @BrianCurtis-NOAA FYI |
@jkbk2004 It seems to me the errors are not from inline post code. It would be difficult for me to debug this issue . |
@jkbk2004 You may move to the next PR process. Meanwhile I will investigate more. |
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I see the test is a debug test, but it seems to be lacking debug information ( a lot of unknown labels where we should see lines and subroutines). @jkbk2004 can your team find out which subroutine is causing the issue? |
jkbk2004
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Ready for Commit Queue
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@jkbk2004 The fix recommended by @DusanJovic-NOAA has been implemented at UPP side. Both @FernandoAndrade-NOAA and I have conducted tests on WCOSS2 and Hera. This PR is ready for testing. |
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Hi, @WenMeng-NOAA . Can you sync up your branch here, so we can begin testing? |
Solved conflicts
@zach1221 Done. |
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Per Gaea admin suggestions, it looks like a quick sample run with |
@FernandoAndrade-NOAA Could you specify which file should be updated? |
@WenMeng-NOAA you can put 'export LD_PRELOAD=/opt/cray/pe/gcc/12.2.0/snos/lib64/libstdc++.so.6' somewhere https://github.com/WenMeng-NOAA/ufs-weather-model/blob/upp_HR4/tests/rt.sh#L750-L751. @FernandoAndrade-NOAA please, confirm |
I would say around line 726, just to be sure. @WenMeng-NOAA FYI |
@FernandoAndrade-NOAA @jkbk2004 Added. Thanks! |
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Leaving a note that baseline creation was successful, however Gaea is unresponsive to the point that I can't create and copy the new baseline directory. Trying again tomorrow morning. Apologies for the delays with Gaea. |
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Gaea and Derecho were extremely slow yesterday and our tests weren't running. Finishing up those two machines currently. |
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I think we should probably skip Gaea and proceed with merging process. We can sync up the Gaea baselines later, when we're able to do so. Fernando is reaching out to their admins again to ensure they're aware of the issue. |
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@WenMeng-NOAA fv3atm sub-pr is merged, can you please revert the change in .gitmodule url and update the submodule hash? |
@zach1221 Done. |
commit f234a3e Author: Ufuk Turunçoğlu <[email protected]> Date: Tue Apr 30 11:35:25 2024 -0600 Fix for land component model (ufs-community#2191) * UFSWM - fix fully coupled land component configuration * NOAHMP - get fixed information from surface file commit 04bbc15 Author: jiandewang <[email protected]> Date: Thu Apr 25 14:52:00 2024 -0400 update MOM6 to its main repo. 20240401 commit (ufs-community#2241) * UFSWM - * MOM6 - update MOM6 to its main repo. 20240401 commit (NCAR-candidate-20240319) commit b6c576d Author: Daniel Sarmiento <[email protected]> Date: Tue Apr 23 12:24:22 2024 -0400 Merged global namelist (ufs-community#2173) * UFSWM - global_control.nml_IN has been added as the new regression test namelist template for all global regression tests. The namelist now uses pointers (i.e. @[abc]) for variables and default values have been added to the default_vars.sh script. A new section in default_vars.sh has been added (export_tiled) to account for tiled RTs that pulls the correct parameter files using the ATMRES variable. Regression tests have been modified to account for these changes. Tests that were not compatible with the GFSv17_p8 core have been disabled for now. They will be turned on as they are updated from GFSv16 to GFSv17. commit 5d2ca19 Author: WenMeng-NOAA <[email protected]> Date: Fri Apr 19 13:59:12 2024 -0400 Update upp submodule (ufs-community#2213) * UFSWM - Update inline post * FV3 - Update upp submodule for inline post commit 47c0099 Author: Brian Curtis <[email protected]> Date: Wed Apr 17 15:59:48 2024 -0400 Add bash linting to CI. Cleanup .sh scripts a bit. Address .sh bugs. Adds -v Verbose option. (ufs-community#2218) Remove nowarn Intel compiler flag (ufs-community#2225) * UFSWM - Add bash linting to CI: - uses superlinter to check for consistent bash code writing - Cleans up .sh scripts to comply with superlinter - Cleans up .sh scripts to be more consistent, easier to read. - Add's -v verbose option if debugging outputs needed, otherwise simplifies rt.sh run echo's. - Addresses smaller bugs - quota/timeout search logic adjusted. - check for dirs existing (DISKNM, STMP, PTMP) before starting. - adjustments/cleanup to ecflow/rocoto sections - rt.sh will attempt to start ecflow, and only stop ecflow if it started from rt.sh. - fix for issue where run_dir will not delete properly. * FV3: Address compiler warnings * atmos_cubed_sphere: Address compiler warnings. commit 4f32a4b Author: Rick Grubin <[email protected]> Date: Mon Apr 15 07:21:08 2024 -0600 Document ATMW / ATMAERO / HAFS WM configurations (ufs-community#2160) * UFSWM * doc/Userguide * source * conf.py * Configurations.rst * FAQ.rst * InputsOutputs.rst * Introduction.rst commit ac4445d Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon Apr 15 08:59:42 2024 -0400 Bump idna from 3.6 to 3.7 in /doc/UsersGuide (ufs-community#2234) *doc/UserGuide *requirements.txt - updates inda version from 3.6 to 3.7 commit 281b32f Author: Samuel Trahan (NOAA contractor) <[email protected]> Date: Mon Apr 15 08:38:01 2024 -0400 bug fixes: kchunk3d ignored, hailwat uninitialized in dycore, tile_num wrong for nests (ufs-community#2201) * UFSWM - None. * FV3 - Write component will use kchunk3d. Model init sends the right tile number to CCPP. * atmos_cubed_sphere - Initialize the hailwat variable. Pass global_tile index to model. commit 8a5f711 Author: Denise Worthen <[email protected]> Date: Thu Apr 11 13:32:26 2024 -0400 Add PIO namelist control for CICE (ufs-community#2145) Update to CICE-Consortium/CICE aca8357. Adds implementation of namelist PIO options for CICE commit 45c8b2a Author: JONG KIM <[email protected]> Date: Thu Apr 4 19:49:13 2024 -0400 Hotfix/cubed sphere hash fix: HAILCAST diagnostic code (units issue) (ufs-community#2223) cubed_sphere hash update: f060e85 for a bug- fix in the HAILCAST diagnostic code (units issue) commit 26e6db6 Author: Denise Worthen <[email protected]> Date: Wed Apr 3 19:57:08 2024 -0400 Enable cpl_scalars export from ATM and NoahMP for use by CMEPS (ufs-community#2175) * CMEPS - allow additional dimension in cpl_scalars for CSG and regional ATM domains for use in mediator history files * CMEPS - fix mapping mask for lnd->atm * FV3 - add export of cpl_scalars * NOAHMP - add export of cpl_scalars commit 1411b90 Author: Dusan Jovic <[email protected]> Date: Mon Apr 1 18:04:44 2024 -0400 Update module_write_netcdf to avoid hangs in RRFS runs (ufs-community#2193) * UFSWM - Update module_write_netcdf to avoid hangs in RRFS runs * FV3 - Update module_write_netcdf to avoid hangs in RRFS runs commit 87c27b9 Author: Matthew Masarik <[email protected]> Date: Fri Mar 29 15:23:42 2024 -0400 WW3 feature: Langmuir turbulence parameterization (ufs-community#2195) * WW3 - Langmuir turbulence parameterization commit c54e986 Author: Samuel Trahan (NOAA contractor) <[email protected]> Date: Wed Mar 27 16:11:03 2024 -0400 regression test system bug fixes, eliminate MOM6 warnings (ufs-community#2197), add xr_cnvcld flag to FV3 (ufs-community#2185) (ufs-community#2202) * UFSWM - atparse.bash: correctly handle input that doesn't end with an end-of-line character. Fix some bugs in Rocoto support and clean up rt.sh. * FV3 - namelist flag xr_cnvcld to control if suspended grid-mean convective cloud condensate should be included in cloud fraction and optical depth calculation in radiation in the GFS suite * ccpp - physics-level changes to implement new namelist variable * MOM6 - update MOM6 code to eliminate all compiler warnings
Commit Queue Requirements:
Description:
This PR aims to update revision of upp submodule which is under FV3 subcomponent. The main changes include rocky8 transition and other UPP updates to post process of UFS based global and regional applications.
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Git Tracking
UFSWM:
Sub component Pull Requests:
UFSWM Blocking Dependencies:
Changes
Regression Test Changes (Please commit test_changes.list):
Input data Changes:
Library Changes/Upgrades:
Testing Log: