This is EMC flake model #164

YihuaWu-NOAA · 2020-07-10T20:35:58Z

Updated NCAR ccpp physics
Added flake

Associated PRs:

NCAR/ccpp-physics#471
NOAA-EMC/fv3atm#141
#164

climbfuji · 2020-07-16T13:12:06Z

parm/ccpp_v16beta_flake_c96.nml.IN

@@ -0,0 +1,338 @@
+&amip_interp_nml


Could this parm file be joined with the existing GFS v16 beta parm file, using variable substitutions?

climbfuji · 2020-07-16T13:12:40Z

tests/fv3_conf/ccpp_gfs_v16_flake_run.IN

+
+cp ${PATHRT}/../FV3/ccpp/suites/suite_${CCPP_SUITE}.xml suite_${CCPP_SUITE}.xml
+
+# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH, append to module-setup.sh


This block (lines 24-28) is no longer needed, please remove.

climbfuji · 2020-07-16T13:13:10Z

tests/fv3_conf/ccpp_gfs_v16_flake_run.IN

@@ -0,0 +1,28 @@
+rm -fr INPUT RESTART


Could this regression test setup-run-dir script be joined with an existing script, using variables to control copying the ORO_FLAKE data?

I'd prefer to have this new feature separate from gfs_v16 as the feature does not belong to gfs_v16, but based on gfs_v16. In the future it can be one of candidate to be included in next production branch, srw, RRFS, or gfsv17.

Ok, all good.

climbfuji · 2020-07-16T13:13:46Z

tests/rt.conf

@@ -166,3 +166,7 @@ COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp
 COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp | standard | jet.intel | fv3 |

 RUN | fv3_ccpp_gocart_clm | standard | | fv3 |
+######################################################################################################################################################################################


Is it possible to combine this COMPILE line with a previous one (for example where the original GFSv16beta suite is compiled) to avoid an extra compile step?

Also, please add this regression test to rt_gnu.conf as well. @junwang-noaa @DusanJovic-NOAA

Yes, I did it

YihuaWu-NOAA · 2020-07-16T14:39:38Z

Hi, Dom, In parm/ccpp_v16beta_flake_c96.nml.IN <#164 (comment)> :

@@ -0,0 +1,338 @@

+&amip_interp_nml Could this parm file be joined with the existing GFS v16 beta parm file, using variable substitutions? Yes. Could you show me How can I do it. I am familiar with the setup of these files. Thanks! Regards *Yihua----------------------------------------------------Yihua Wu, Ph D*I.M. Systems Group NOAA/NWS/NCEP/EMC 5830 University Research Court, Room: 2031 College Park, Maryland 20740, USA Phone: (301)-683-3691 Fax: (301)-683-3703

…

On Thu, Jul 16, 2020 at 9:14 AM Dom Heinzeller ***@***.***> wrote: ***@***.**** requested changes on this pull request. ------------------------------ In parm/ccpp_v16beta_flake_c96.nml.IN <#164 (comment)> : > @@ -0,0 +1,338 @@ +&amip_interp_nml Could this parm file be joined with the existing GFS v16 beta parm file, using variable substitutions? ------------------------------ In tests/fv3_conf/ccpp_gfs_v16_flake_run.IN <#164 (comment)> : > +fi +cp @[RTPWD]/FV3_input_data/INPUT/aerosol.dat . +cp @[RTPWD]/FV3_input_data/INPUT/co2historicaldata_201*.txt . +cp @[RTPWD]/FV3_input_data/INPUT/sfc_emissivity_idx.txt . +cp @[RTPWD]/FV3_input_data/INPUT/solarconstant_noaa_an.txt . +cp @[RTPWD]/FV3_input_data/ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77 ./global_o3prdlos.f77 +cp @[RTPWD]/FV3_input_data/global_h2o_pltc.f77 ./global_h2oprdlos.f77 +cp @[RTPWD]/FV3_input_data/*grb . +cp @[RTPWD]/FV3_input_data/*_table . +cp @[RTPWD]/FV3_input_data/diag_table_gfdlmp diag_table +cp @[RTPWD]/FV3_input_data_gsd/field_table_suite2 field_table +cp @[RTPWD]/FV3_input_data/*configure . + +cp ${PATHRT}/../FV3/ccpp/suites/suite_${CCPP_SUITE}.xml suite_${CCPP_SUITE}.xml + +# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH, append to module-setup.sh This block (lines 24-28) is no longer needed, please remove. ------------------------------ In tests/fv3_conf/ccpp_gfs_v16_flake_run.IN <#164 (comment)> : > @@ -0,0 +1,28 @@ +rm -fr INPUT RESTART Could this regression test setup-run-dir script be joined with an existing script, using variables to control copying the ORO_FLAKE data? ------------------------------ In tests/rt.conf <#164 (comment)> : > @@ -166,3 +166,7 @@ COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp | standard | jet.intel | fv3 | RUN | fv3_ccpp_gocart_clm | standard | | fv3 | +###################################################################################################################################################################################### Is it possible to combine this COMPILE line with a previous one (for example where the original GFSv16beta suite is compiled) to avoid an extra compile step? ------------------------------ In tests/rt.conf <#164 (comment)> : > @@ -166,3 +166,7 @@ COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp | standard | jet.intel | fv3 | RUN | fv3_ccpp_gocart_clm | standard | | fv3 | +###################################################################################################################################################################################### Also, please add this regression test to rt_gnu.conf as well. @junwang-noaa <https://github.com/junwang-noaa> @DusanJovic-NOAA <https://github.com/DusanJovic-NOAA> — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#164 (review)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ANJBYQHL2EJ7N4OGDBNVYE3R334MTANCNFSM4OW5GIQA> .

climbfuji · 2020-07-16T14:50:39Z

Look at parm/ccpp_gsd.nml.IN for example. You see many examples of variables like @[LHEATSTRG] that get substituted with actual values. The default values are set in tests/default_vars.sh - regression tests that need to change some of these values do so in their tests/tests/REGTESTNAME script. You can diff the basic GFSv16beta parm file with yours to see what needs to be added/changed. Then add those as variables to the default GFSv16 parm file, make sure there are default values defined in tests/default_vars.sh and that the default values are correct, then overwrite them in tests/tests/YOURFLAKEREGTESTNAME. Does this make sense? Dom

…

On Jul 16, 2020, at 8:39 AM, YihuaWu-NOAA ***@***.***> wrote: Hi, Dom, In parm/ccpp_v16beta_flake_c96.nml.IN <#164 (comment)> : > @@ -0,0 +1,338 @@ +&amip_interp_nml Could this parm file be joined with the existing GFS v16 beta parm file, using variable substitutions? Yes. Could you show me How can I do it. I am familiar with the setup of these files. Thanks! Regards *Yihua----------------------------------------------------Yihua Wu, Ph D*I.M. Systems Group NOAA/NWS/NCEP/EMC 5830 University Research Court, Room: 2031 College Park, Maryland 20740, USA Phone: (301)-683-3691 Fax: (301)-683-3703 On Thu, Jul 16, 2020 at 9:14 AM Dom Heinzeller ***@***.***> wrote: > ***@***.**** requested changes on this pull request. > ------------------------------ > > In parm/ccpp_v16beta_flake_c96.nml.IN > <#164 (comment)> > : > > > @@ -0,0 +1,338 @@ > > +&amip_interp_nml > > > Could this parm file be joined with the existing GFS v16 beta parm file, > using variable substitutions? > ------------------------------ > > In tests/fv3_conf/ccpp_gfs_v16_flake_run.IN > <#164 (comment)> > : > > > +fi > > +cp @[RTPWD]/FV3_input_data/INPUT/aerosol.dat . > > +cp @[RTPWD]/FV3_input_data/INPUT/co2historicaldata_201*.txt . > > +cp @[RTPWD]/FV3_input_data/INPUT/sfc_emissivity_idx.txt . > > +cp @[RTPWD]/FV3_input_data/INPUT/solarconstant_noaa_an.txt . > > +cp @[RTPWD]/FV3_input_data/ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77 ./global_o3prdlos.f77 > > +cp @[RTPWD]/FV3_input_data/global_h2o_pltc.f77 ./global_h2oprdlos.f77 > > +cp @[RTPWD]/FV3_input_data/*grb . > > +cp @[RTPWD]/FV3_input_data/*_table . > > +cp @[RTPWD]/FV3_input_data/diag_table_gfdlmp diag_table > > +cp @[RTPWD]/FV3_input_data_gsd/field_table_suite2 field_table > > +cp @[RTPWD]/FV3_input_data/*configure . > > + > > +cp ${PATHRT}/../FV3/ccpp/suites/suite_${CCPP_SUITE}.xml suite_${CCPP_SUITE}.xml > > + > > +# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH, append to module-setup.sh > > > This block (lines 24-28) is no longer needed, please remove. > ------------------------------ > > In tests/fv3_conf/ccpp_gfs_v16_flake_run.IN > <#164 (comment)> > : > > > @@ -0,0 +1,28 @@ > > +rm -fr INPUT RESTART > > > Could this regression test setup-run-dir script be joined with an existing > script, using variables to control copying the ORO_FLAKE data? > ------------------------------ > > In tests/rt.conf > <#164 (comment)> > : > > > @@ -166,3 +166,7 @@ COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp > > COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp | standard | jet.intel | fv3 | > > > > RUN | fv3_ccpp_gocart_clm | standard | | fv3 | > > +###################################################################################################################################################################################### > > > Is it possible to combine this COMPILE line with a previous one (for > example where the original GFSv16beta suite is compiled) to avoid an extra > compile step? > ------------------------------ > > In tests/rt.conf > <#164 (comment)> > : > > > @@ -166,3 +166,7 @@ COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp > > COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp | standard | jet.intel | fv3 | > > > > RUN | fv3_ccpp_gocart_clm | standard | | fv3 | > > +###################################################################################################################################################################################### > > > Also, please add this regression test to rt_gnu.conf as well. > @junwang-noaa <https://github.com/junwang-noaa> @DusanJovic-NOAA > <https://github.com/DusanJovic-NOAA> > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#164 (review)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ANJBYQHL2EJ7N4OGDBNVYE3R334MTANCNFSM4OW5GIQA> > . > — You are receiving this because your review was requested. Reply to this email directly, view it on GitHub <#164 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB5C2RKHHNFAHT4V4HEWKULR34GLZANCNFSM4OW5GIQA>.

YihuaWu-NOAA · 2020-07-16T14:54:44Z

I removed line 24-28 in tests/fv3_conf/ccpp_gfs_v16_flake_run.IN <#164 (comment)> I combined the compiling lines for flake I added the regression test to rt_gnu.conf . Thanks! *Yihua----------------------------------------------------Yihua Wu, Ph D*I.M. Systems Group NOAA/NWS/NCEP/EMC 5830 University Research Court, Room: 2031 College Park, Maryland 20740, USA Phone: (301)-683-3691 Fax: (301)-683-3703 On Thu, Jul 16, 2020 at 10:39 AM Yihua. Wu - NOAA Affiliate < [email protected]> wrote:

…

Hi, Dom, In parm/ccpp_v16beta_flake_c96.nml.IN <#164 (comment)> : > @@ -0,0 +1,338 @@ +&amip_interp_nml Could this parm file be joined with the existing GFS v16 beta parm file, using variable substitutions? Yes. Could you show me How can I do it. I am familiar with the setup of these files. Thanks! Regards *Yihua----------------------------------------------------Yihua Wu, Ph D*I.M. Systems Group NOAA/NWS/NCEP/EMC 5830 University Research Court, Room: 2031 College Park, Maryland 20740, USA Phone: (301)-683-3691 Fax: (301)-683-3703 On Thu, Jul 16, 2020 at 9:14 AM Dom Heinzeller ***@***.***> wrote: > ***@***.**** requested changes on this pull request. > ------------------------------ > > In parm/ccpp_v16beta_flake_c96.nml.IN > <#164 (comment)> > : > > > @@ -0,0 +1,338 @@ > > +&amip_interp_nml > > > Could this parm file be joined with the existing GFS v16 beta parm file, > using variable substitutions? > ------------------------------ > > In tests/fv3_conf/ccpp_gfs_v16_flake_run.IN > <#164 (comment)> > : > > > +fi > > +cp @[RTPWD]/FV3_input_data/INPUT/aerosol.dat . > > +cp @[RTPWD]/FV3_input_data/INPUT/co2historicaldata_201*.txt . > > +cp @[RTPWD]/FV3_input_data/INPUT/sfc_emissivity_idx.txt . > > +cp @[RTPWD]/FV3_input_data/INPUT/solarconstant_noaa_an.txt . > > +cp @[RTPWD]/FV3_input_data/ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77 ./global_o3prdlos.f77 > > +cp @[RTPWD]/FV3_input_data/global_h2o_pltc.f77 ./global_h2oprdlos.f77 > > +cp @[RTPWD]/FV3_input_data/*grb . > > +cp @[RTPWD]/FV3_input_data/*_table . > > +cp @[RTPWD]/FV3_input_data/diag_table_gfdlmp diag_table > > +cp @[RTPWD]/FV3_input_data_gsd/field_table_suite2 field_table > > +cp @[RTPWD]/FV3_input_data/*configure . > > + > > +cp ${PATHRT}/../FV3/ccpp/suites/suite_${CCPP_SUITE}.xml suite_${CCPP_SUITE}.xml > > + > > +# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH, append to module-setup.sh > > > This block (lines 24-28) is no longer needed, please remove. > ------------------------------ > > In tests/fv3_conf/ccpp_gfs_v16_flake_run.IN > <#164 (comment)> > : > > > @@ -0,0 +1,28 @@ > > +rm -fr INPUT RESTART > > > Could this regression test setup-run-dir script be joined with an > existing script, using variables to control copying the ORO_FLAKE data? > ------------------------------ > > In tests/rt.conf > <#164 (comment)> > : > > > @@ -166,3 +166,7 @@ COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp > > COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp | standard | jet.intel | fv3 | > > > > RUN | fv3_ccpp_gocart_clm | standard | | fv3 | > > +###################################################################################################################################################################################### > > > Is it possible to combine this COMPILE line with a previous one (for > example where the original GFSv16beta suite is compiled) to avoid an extra > compile step? > ------------------------------ > > In tests/rt.conf > <#164 (comment)> > : > > > @@ -166,3 +166,7 @@ COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp > > COMPILE | CCPP=Y SUITES=FV3_GFS_2017_gfdlmp,FV3_GFS_2017_gfdlmp_noahmp | standard | jet.intel | fv3 | > > > > RUN | fv3_ccpp_gocart_clm | standard | | fv3 | > > +###################################################################################################################################################################################### > > > Also, please add this regression test to rt_gnu.conf as well. > @junwang-noaa <https://github.com/junwang-noaa> @DusanJovic-NOAA > <https://github.com/DusanJovic-NOAA> > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#164 (review)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ANJBYQHL2EJ7N4OGDBNVYE3R334MTANCNFSM4OW5GIQA> > . >

YihuaWu-NOAA · 2020-07-17T14:01:59Z

Yes, sure. Change it to ccpp_gfs_flake? *Yihua----------------------------------------------------Yihua Wu, Ph D*I.M. Systems Group NOAA/NWS/NCEP/EMC 5830 University Research Court, Room: 2031 College Park, Maryland 20740, USA Phone: (301)-683-3691 Fax: (301)-683-3703

…

On Fri, Jul 17, 2020 at 9:53 AM Jun Wang ***@***.***> wrote: ***@***.**** commented on this pull request. ------------------------------ In tests/fv3_conf/ccpp_gfs_v16_flake_run.IN <#164 (comment)> : > @@ -0,0 +1,28 @@ +rm -fr INPUT RESTART I'd prefer to have this new feature separate from gfs_v16 as the feature does not belong to gfs_v16, but based on gfs_v16. In the future it can be one of candidate to be included in next production branch, srw, RRFS, or gfsv17. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#164 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ANJBYQAHCU6I3QZOXVEILLLR4BJW5ANCNFSM4OW5GIQA> .

junwang-noaa · 2020-07-17T15:14:38Z

I'd suggest leaving it as is since we know it is a new feature added based on gfs_v16. On Fri, Jul 17, 2020 at 10:02 AM YihuaWu-NOAA <[email protected]> wrote:

…

Yes, sure. Change it to ccpp_gfs_flake? *Yihua----------------------------------------------------Yihua Wu, Ph D*I.M. Systems Group NOAA/NWS/NCEP/EMC 5830 University Research Court, Room: 2031 College Park, Maryland 20740, USA Phone: (301)-683-3691 Fax: (301)-683-3703 On Fri, Jul 17, 2020 at 9:53 AM Jun Wang ***@***.***> wrote: > ***@***.**** commented on this pull request. > ------------------------------ > > In tests/fv3_conf/ccpp_gfs_v16_flake_run.IN > < #164 (comment) > > : > > > @@ -0,0 +1,28 @@ > +rm -fr INPUT RESTART > > I'd prefer to have this new feature separate from gfs_v16 as the feature > does not belong to gfs_v16, but based on gfs_v16. In the future it can be > one of candidate to be included in next production branch, srw, RRFS, or > gfsv17. > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > < #164 (comment) >, > or unsubscribe > < https://github.com/notifications/unsubscribe-auth/ANJBYQAHCU6I3QZOXVEILLLR4BJW5ANCNFSM4OW5GIQA > > . > — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#164 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AI7D6TKFMAU3II4Z2D2T4HDR4BKWRANCNFSM4OW5GIQA> .

climbfuji

The submodule pointer update is still missing. I see fv3atm's hash as cdbe98a, but it should be 9e5074e.

climbfuji · 2020-07-20T20:27:30Z

tests/fv3_conf/ccpp_gfs_v16_flake_run.IN

@@ -0,0 +1,28 @@
+rm -fr INPUT RESTART


Ok, all good.

Modified diag_table* to include stochastic block. Updated stochastic …

YihuaWu-NOAA added 3 commits July 10, 2020 20:28

This is EMC flake model

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Updated .gitmodules file under ufs-weather-model and tests/rt.conf

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Updated .gitmodules file under usf-weather-model

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YihuaWu-NOAA mentioned this pull request Jul 13, 2020

This is EMC flake model NOAA-EMC/fv3atm#141

Merged

DusanJovic-NOAA requested review from junwang-noaa, climbfuji and DusanJovic-NOAA July 13, 2020 13:42

Point to fv3 flake branch

1c02f34

junwang-noaa mentioned this pull request Jul 14, 2020

Updated the lake physics of flake #163

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Updated ccpp_gfs_v16_flake_run.IN to use the new oro data for flake test

d5b0fc8

YihuaWu-NOAA mentioned this pull request Jul 16, 2020

EMC flake NCAR/ccpp-physics#471

Merged

climbfuji requested changes Jul 16, 2020

View reviewed changes

Merge remote-tracking branch 'upstream/develop' into flake

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Updated the following files and directories

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YihuaWu-NOAA added 5 commits July 18, 2020 20:14

Merge remote-tracking branch 'upstream/develop' into flake

52ba917

update to the latest ccpp/physics branch

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Updated compile and regression test log files

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Updated ccpp-physics

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Point to NOAA-EMC_fv3atm

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climbfuji requested changes Jul 20, 2020

View reviewed changes

tests/fv3_conf/ccpp_gfs_v16_flake_run.IN

@@ -0,0 +1,28 @@

rm -fr INPUT RESTART

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Ok, all good.

point to NOAA-EMC fv3 repo

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climbfuji self-requested a review July 20, 2020 20:57

climbfuji approved these changes Jul 20, 2020

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DusanJovic-NOAA approved these changes Jul 20, 2020

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Updated rt_orion.conf file

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junwang-noaa approved these changes Jul 21, 2020

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junwang-noaa merged commit 15124ee into ufs-community:develop Jul 21, 2020

pjpegion pushed a commit to NOAA-PSL/ufs-weather-model.p7b that referenced this pull request Jul 20, 2021

Fix submodule pointer for ccpp-framework (ufs-community#164)

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epic-cicd-jenkins pushed a commit that referenced this pull request Apr 17, 2023

Merge pull request #164 from jwolff-ncar/feature/jkw_stoch_updates

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Modified diag_table* to include stochastic block. Updated stochastic …

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This is EMC flake model #164

This is EMC flake model #164

YihuaWu-NOAA commented Jul 10, 2020 •

edited by DusanJovic-NOAA

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		cp ${PATHRT}/../FV3/ccpp/suites/suite_${CCPP_SUITE}.xml suite_${CCPP_SUITE}.xml

		# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH, append to module-setup.sh

This is EMC flake model #164

This is EMC flake model #164

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YihuaWu-NOAA commented Jul 16, 2020 via email

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YihuaWu-NOAA commented Jul 10, 2020 •

edited by DusanJovic-NOAA

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