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Update develop from gsd/develop 2020/06/30 #156

Merged

DusanJovic-NOAA merged 194 commits into ufs-community:develop from climbfuji:update_master_from_gsl_develop_20200630

Jul 2, 2020

Merge NEMSfv3gfs gsd/develop into ufs-weather-model dtc/develop, squa…

…shed commit of the following:

commit a9afb3607115ba35cc3c841bf48d410a048912c8
Merge: 6c9a70dc 2d13e99d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Nov 21 15:44:02 2019 -0700

    Merge pull request #279 from climbfuji/update_submodule_pointers_rdlai

    Initialize Leaf Area Index (LAI) from climatology and other submodule updates

commit 2d13e99dc0c5a39ece155e6ac6eb2bd5ddcc1037
Author: Dom Heinzeller <[email protected]>
Date:   Thu Nov 21 15:43:07 2019 -0700

    Update submodule pointers for ccpp/physics and FV3

commit 1653ff116ddca30b690a7375006139eab55237de
Author: Dom Heinzeller <[email protected]>
Date:   Thu Nov 21 12:59:39 2019 -0700

    Update submodule pointers for FV3 and ccpp/physics

commit caed402a8f5a6a535e58284f63f678e692f341d9
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 20 16:24:56 2019 -0700

    Update submodule pointer for stochastic physics to point to the head of the master branch

commit 38c66d903797bdc7dbbc99589badece212a63412
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 20 16:13:30 2019 -0700

    Update FMS to the head of the GFS-FMS branch

commit 29fbfcad795536eb763499ea98e9596d03c9d483
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 20 16:13:08 2019 -0700

    Update submodule WW3 to point back to the NOAA-EMC version, set correct hash

commit 6c9a70dcdf5da8f1f678ad17523ef7533291062f
Merge: 8b1bd280 fd8b7b48
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 19 20:54:26 2019 -0700

    Merge pull request #278 from climbfuji/add_gsd_sar_regression_test

    gsd/develop: add GSD SAR regression test

commit fd8b7b487a7b6a2cb3ad0a2e395aaf874b6efd8f
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 19 20:53:00 2019 -0700

    tests/tests/fv3_ccpp_gsd_sar: bugfix, correct name of control directory

commit 86cc553107ace9e66429fbfee6e6e2a1dca88c73
Author: Dom Heinzeller <[email protected]>
Date:   Mon Nov 18 14:39:06 2019 -0700

    tests/tests/fv3_ccpp_gsd_sar: correct list of files to check

commit 43dbf0504cf5f86b9ad416e2d6358043df3863fb
Author: Dom Heinzeller <[email protected]>
Date:   Mon Nov 18 09:22:07 2019 -0700

    Add regression test for GSD SAR

commit 8b1bd2805a2543bb1a434dcc0718ca89e27ba284
Merge: c73f665b 13329bf9
Author: Dom Heinzeller <[email protected]>
Date:   Sat Nov 2 06:08:45 2019 +0900

    Merge pull request #277 from climbfuji/gsd_develop_update_submodule_pointer_ccpp_physics_20191102g

    gsd/develop: update submodule pointer for ccpp-physics 2019/11/01

commit 13329bf9b7d8191a4e85789d52f4a6174bf61c50
Author: Dom Heinzeller <[email protected]>
Date:   Sat Nov 2 06:06:24 2019 +0900

    Update submodule pointer for ccpp/physics

commit c73f665b5838a2db86ba5bf65157c89f4ed90cc5
Merge: fafa77ee 0f0778d4
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 28 12:54:28 2019 +0900

    Merge pull request #276 from climbfuji/gsd_debug_test_and_submodule_pointer_update_20191028

    gsd/develop: add CCPP GSD suite debug test, reduce timestep for Thompson MP tests, update submodule pointers

commit 0f0778d4cb84150c2b1b3a2e0fe7501b897f2d9f
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 28 12:39:54 2019 +0900

    Update submodule pointer for ccpp/physics

commit c3c0379e1cb10b7060095b9a85c045d6b3058e8b
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 28 12:33:09 2019 +0900

    Add new regression test for GSD suite in DEBUG mode

commit cc2706d9c35fbbd69048c244dc0997107b9a3c78
Author: Dom Heinzeller <[email protected]>
Date:   Fri Oct 25 11:14:30 2019 +0900

    Reduce timestep for regression tests using Thompson MP from 1200s to 600s

commit fafa77eeae3696ff1fd9922b88becd3644b9dd55
Merge: f3d1f6d2 e6b48fbe
Author: Dom Heinzeller <[email protected]>
Date:   Thu Oct 24 11:00:48 2019 +0900

    Merge pull request #275 from climbfuji/gsd_develop_update_submodule_pointer_20191024

    gsd/develop: update submodule pointer, remote theia

commit e6b48fbea416696a5b23f6910df2697334c8d656
Author: Dom Heinzeller <[email protected]>
Date:   Thu Oct 24 10:57:13 2019 +0900

    Update submodule pointer for ccpp/physics

commit 1bc10a8b7da94ed4d3648157ad9a8dfcef25180a
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 21 08:20:15 2019 +0900

    Update submodule pointer for ccpp-physics

commit b583bd011b9e4139c3ff9efc7fa0240554d39a28
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 21 08:19:12 2019 +0900

    tests/rt_ccpp_gsd.conf: remove theia

commit f3d1f6d212199af9eb47cd4e723eecbbdbd1f76c
Merge: eac6d996 deec3095
Author: Dom Heinzeller <[email protected]>
Date:   Sun Oct 13 14:59:39 2019 +0900

    Merge pull request #265 from climbfuji/update_submodule_pointers_20191011_1

    gsd/develop: update submodule pointers for FMS and ccpp/physics

commit deec3095e43efd3b1599052525a631faea17d7d0
Author: Dom Heinzeller <[email protected]>
Date:   Fri Oct 11 08:01:14 2019 +0900

    Update submodule pointers for ccpp/physics and FMS

commit eac6d996d84085d4010e8e1bfc8dff1855f9e21f
Merge: 49f6c48e e49075d7
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 14:21:16 2019 -0600

    Merge pull request #257 from climbfuji/update_submodule_pointers_gsd_develop_20190924

    gsd/develop: update submodule pointers 2019/09/24

commit e49075d70b330b2a7dfa907d9bc7ad6e97a48992
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 14:19:43 2019 -0600

    Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics

commit 49f6c48edc94ba9d9ac0c143b6068ce56159cb00
Merge: 5ea40b23 221bd404
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 12:56:42 2019 -0600

    Merge pull request #256 from climbfuji/update_gsd_develop_from_gmtb_develop_20190924

    Update gsd/develop from gmtb/develop 2019/09/24

commit 221bd404496a25f133b1f4e7aaf068225dfd9446
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 12:51:44 2019 -0600

    Update CODEOWNERS and .gitmodules for gsd/develop, update submodule pointers

commit e30fc6c67c3c98ceab5b0859fe47780de0859b91
Merge: e7691783 3042e609
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 10:53:31 2019 -0600

    Merge pull request #255 from climbfuji/cleanup_remove_thompson_satadj

    gmtb/develop: cleanup work 2019/09/24

commit 3042e6090e4e4b6d3f22d2e3ee0677df057263ae
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 09:52:12 2019 -0600

    Update submodule pointer for ccpp-physics, remove Thompson MP + saturation adjustment tests

commit e7691783692215fb713ba60ae2799f33a2147efe
Merge: f1b4c707 d5051cd2
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 23 10:16:50 2019 -0600

    Merge pull request #254 from climbfuji/update_submodule_pointers_20190923

    Update submodule pointers 2019/09/23

commit d5051cd2f28c7cb2df686db02664f98584c3fb70
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 23 10:15:15 2019 -0600

    Update submodule pointers following https://github.com/NCAR/NEMSfv3gfs/pull/251 et al.

commit f1b4c70787e949ac3557a4f4f89e549574c4065c
Merge: 4d78478e e86179ec
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 23 09:33:06 2019 -0600

    Merge pull request #251 from climbfuji/gmtb_develop_update_from_master_20190920

    gmtb/develop: update from master 2019/09/20, remove TRANSITION mode

commit e86179ec519baba659f29c71ea119cf010e6020c
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 20 19:59:53 2019 -0600

    Update submodule pointer for ccpp/physics

commit 136b3af34a6c4c9c759fa13f49ca0009e8e9d1c4
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 20 08:55:40 2019 -0600

    Remove TRANSITION mode

commit 20a5de0f2bab4ddea82df0bb2682738244ac86f0
Merge: c97254f5 31e98b23
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 20 07:41:07 2019 -0600

    Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD

commit c97254f5dc9e84281fa26098b603e3436cead0ac
Merge: 4d78478e fadc8080
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 20 07:24:46 2019 -0600

    Merge branch 'master' of https://github.com/NCAR/NEMSfv3gfs into HEAD

commit 4d78478e98a4aa1e547dc714b9dd7b895f71f351
Merge: af03bb30 4c1b7e7b
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 19 16:10:13 2019 -0600

    Merge pull request #250 from climbfuji/update_submodule_pointers_20190919

    Update submodule pointers for FV3, ccpp-physics, ccpp-framework 2019/09/19

commit 4c1b7e7b99568e8e3d19c5727e6ba41b2c3ae2d7
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 19 16:08:16 2019 -0600

    Update submodule pointers for FV3, ccpp-physics, ccpp-framework

commit af03bb30daac3be4b6aca41043612743f66d618c
Merge: 80ff65a6 5aab0bee
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 19 14:40:18 2019 -0600

    Merge pull request #249 from climbfuji/myj_with_dom_mods

    gmtb/develop: MYJ PBL/SFC, Noah MP, Cheyenne modulefiles, cleanup rt*.conf

commit 5aab0bee5e2952529cafb2191f0b8c6f53ea4f43
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 18 13:54:29 2019 -0600

    Update submodule pointer for FMS and ccpp/physics

commit 1d09c3b363c6c0ac05cabe4ce6ec2d4cc86499ae
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 18 13:49:09 2019 -0600

    Bugfix for modulefiles/macosx.gnu/fv3

commit 04321dc32e522e2ece1ddd952c5771922b45ce6a
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 16 15:40:52 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit 2bc9874472eb499d7381a37782fbf3ac04af266b
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 16 15:37:57 2019 -0600

    ccpp/CMakeLists.txt: for GNU and REPRO mode, add -g to compiler options

commit 9f5a6ca3be704d40d2473f5bb8017195dbd5d93e
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 17:21:26 2019 -0600

    Add hera.intel to rt_ccpp_caps.conf, rt_ccpp_gmtb.conf, rt_ccpp_gsd.conf

commit a747a0687153c1e69f8a741bcbdbc67eff766943
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:43:45 2019 -0600

    Update submodule pointers for FV3, ccpp-framework, ccpp-physics

commit 9091411f3fe01d44701545ed75d0b5fc90c313b0
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:43:24 2019 -0600

    Update ESMF version for macOS and linux platforms

commit f1c3c4a37351e7097505cfe5ca136e4b2d5e5d2e
Merge: 1aedd2bb 80ff65a6
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:41:38 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into myj_with_dom_mods

commit 1aedd2bb06899f3c273fb151d54e6c9c0b2bf2d8
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:25:52 2019 -0600

    tests/rt_ccpp_gmtb.conf: formatting changes

commit 80ff65a69a144127015aa1703a73dbc123df008e
Merge: a6b70173 4183ee57
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:23:34 2019 -0600

    Merge pull request #246 from climbfuji/gmtb_develop_metadata2html_batchconvert

    gmtb/develop: metadata2html batch processing

commit 141f41e44c3977287808bb4d08f8adfeb2ecbcc1
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:10:38 2019 -0600

    Remove redundant regression test configurations

commit 940b7d1a6de99438a9e5a33bab836dab52e8a0a6
Merge: 26acc72b 3c961fa0
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:08:26 2019 -0600

    Merge branch 'noahmp' of https://github.com/grantfirl/NEMSfv3gfs into myj_with_dom_mods

commit 26acc72b9c895c28f213a73aa17dbe4a953fdaab
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:01:40 2019 -0600

    Combining CCPP GFDLMP namelist template with MYJ changes, add default values to tests/default_vars.sh

    Remove separate regression test config for MYJ, add to rt_ccpp_gmtb.conf

commit abf19ed89d7d0a84840cfccf759d2cad7b8c5526
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:00:17 2019 -0600

    modulefiles/cheyenne.*/fv3: update ESMF to 8.0.0bs48, use modules instead of setting environment variables manually

commit 8a1cc14102eab44fdda81daaec0c0f6ba6a60a51
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 15:59:30 2019 -0600

    ccpp/suites/suite_FV3_GFS_2017_myj.xml: update with stochastic_physics and UGWD changes

commit 3c961fa0bcf21dc5e5020b1a326caf47c580c58b
Author: Grant Firl <[email protected]>
Date:   Fri Sep 13 14:52:04 2019 -0600

    add noahmp tests to rt.conf and rt_ccpp_gmtb.conf

commit db00f41e14c62aeadad503119e95f287562bd4d7
Merge: b34799b2 282ad6b6
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 10:46:04 2019 -0600

    Merge branch 'myj_from_qingfu' into detect_machine_cheyenne_update_20190912

commit a6b701733c4b1571a8a54c12db2142b3b5f9b815
Merge: 079b0b14 b34799b2
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 09:37:14 2019 -0600

    Merge pull request #247 from climbfuji/detect_machine_cheyenne_update_20190912

    gmtb/develop: update tests/detect_machine.sh for Cheyenne

commit b34799b26f6c956adc313027ffd6c51204e19acb
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 12 21:17:03 2019 -0600

    tests/detect_machine.sh: detect cheyenne with and without .ib. in hostname

commit 4183ee576bfedea4fec85c72d3f0d8f26c2900e7
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 12 15:38:08 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: remove outdated version number from comment

commit 92d6056d8b90d98e3ae2ffca275d5767f634b449
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 12 08:45:09 2019 -0600

    Update submodule pointer for ccpp/framework

commit 25486e833de3d752824ef391474f939daf370ca4
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 12 08:44:55 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add new variable METADATA_HTML_OUTPUT_DIR required for metadata2html batch processing

commit d5dff46bb109e9a9c4707941013db1e47f221760
Author: Grant Firl <[email protected]>
Date:   Tue Sep 10 17:42:35 2019 -0600

    remove stochastic physics calls from suite_FV3_GFS_2017_gfdlmp_noahmp.xml

commit d114de7b13be53593146c39cacf939affda4c56f
Merge: 2c378470 079b0b14
Author: Grant Firl <[email protected]>
Date:   Tue Sep 10 17:38:07 2019 -0600

    Merge branch 'gmtb/develop' into noahmp

commit 079b0b14c8dabc0e510119de4be1ab0ec0c39dc2
Merge: c28e4020 20a8a674
Author: Dom Heinzeller <[email protected]>
Date:   Sun Sep 8 20:44:52 2019 -0600

    Merge pull request #245 from climbfuji/gmtb_develop_update_submodule_pointers_20190908

    gmtb/develop: update submodule pointers 2019/09/08

commit 20a8a674fd496965423d07936039a355df1da0ff
Author: Dom Heinzeller <[email protected]>
Date:   Sun Sep 8 20:42:53 2019 -0600

    Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics

commit c28e4020d3616f8b2de6d42f7b15e49a34f6e8fa
Merge: 5b120105 69b55a7c
Author: Dom Heinzeller <[email protected]>
Date:   Sun Sep 8 20:32:26 2019 -0600

    Merge pull request #243 from climbfuji/gmtb_develop_monster_merge_20190904

    Convert all schemes to new metadata, merge gsd/develop, update from Vlab, update of CCPP physics with IPD physics changes, GNU portability

commit 2c378470a94f672d726a865ee67fc18e61e5e86c
Author: Grant Firl <[email protected]>
Date:   Fri Sep 6 15:13:34 2019 -0600

    move calculation of precipitation rates for NoahMP to pre-NoahMP scheme rather than GFS_MP_generic_post for B4B testing

commit 69b55a7c7c39ece01f97fef334012cbcc5a6e079
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 5 21:48:25 2019 -0600

    Update submodule pointer for ccpp/framework

commit e67e618bb89dd396235e5dff186d11b458169b0b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 21:18:48 2019 -0600

    Bugfix for GSD suites: replace gwdps_pre with GFS_GWD_generic_pre

commit fadc80809693b39557f8ab4b75329bbf0106c519
Merge: 64f209ce 097468ca
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 16:45:51 2019 -0600

    Merge pull request #244 from climbfuji/github_master_update_submodule_pointer_FV3_20190904

    GitHub master: update submodule pointer for FV3

commit 097468ca99392eb208ee90039f3fc9b1e07ce903
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 16:44:20 2019 -0600

    Update submodule pointer for FV3

commit 64f209cee5a7f364d5a93df27ad8e071f7f4682d
Merge: 45b389ae 8fe8d004
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 16:41:54 2019 -0600

    Merge pull request #242 from climbfuji/github_master_update_from_vlab_master_20190904

    Update GitHub master from Vlab master 2019/09/04

commit a105b2c92f91557b74cf439740628cfbddbc845c
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 15:41:35 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit d5c4e5faa2994d2d75c48d27121ccb5bc46b9c9e
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 15:41:18 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add new dependency ccpp/physics/physics/samfaerosols.F

commit bd52519b589955ecf40e8e3dc2dfe6b087419210
Author: Grant Firl <[email protected]>
Date:   Wed Sep 4 13:36:21 2019 -0600

    add noahmp-specific rt.conf

commit 7d142eb30608f14e8a2a7995f8f37bd8b52445af
Author: Jun Wang <[email protected]>
Date:   Tue Sep 3 01:39:37 2019 +0000

    NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency

    Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951

commit da04e9ae8ecd7448732903b138ae29a675509b37
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 11:04:02 2019 -0600

    ccpp/suites/suite_FV3_GFS_v15_gf.xml: fix merge conflict

commit 3b81d224bdb9b33a7b5743a6c7f1bd836d46cb26
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 11:00:34 2019 -0600

    ccpp/suites/*.xml: remove stochastic_physics and stochastic_physics_sfc schemes from new SDFs

commit 3c247950ad1ddcfe34a3f9a53f53127309a5b3d1
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 10:57:18 2019 -0600

    Update submodule pointers for ccpp/framework and ccpp/physics

commit 8fe8d0041c672b12da0e360f59ab2aa746efbef2
Author: Jun Wang <[email protected]>
Date:   Tue Sep 3 01:39:37 2019 +0000

    NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency

    Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951

commit 7b9cd36b2d17dfbe7693b1669077c7a07b4b8342
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 10:11:08 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add sfc_cice scheme

commit 79e5cd20c3b40effb990573a013e040b03ccb08b
Merge: b9e05586 5ea40b23
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 09:18:44 2019 -0600

    Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion

commit b9e05586d33eac6902fb3e64d7646489c3b25fe1
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 08:22:02 2019 -0600

    modulefiles/macosx.gnu/fv3: improve setting compilers so that it works when MPIF90 etc are not set

commit ceef678c966308e22ba2d08fd26a6526e6f4064b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 08:18:39 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add ccpp_types to converted metadata dictionary

commit 0aafc0a34ed6649d8e54d058f96e83712162bbda
Author: Grant Firl <[email protected]>
Date:   Tue Sep 3 15:08:02 2019 -0600

    update SDF using noahmp

commit 99626b8c2da1a22d6abb9da32cc3fc9168614ba7
Merge: 235b712b 5b120105
Author: Grant Firl <[email protected]>
Date:   Tue Sep 3 15:06:00 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into noahmp

commit caa9037ab43b21fd727d1d030b4cef9ecab7f1d3
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 10 08:05:30 2019 -0600

    compsets/fv3.input: set variables DO_SPPT, DO_SHUM, DO_SKEB, DO_SFCPERTS for fv3_stochy test

commit bf8c2ded4b6779c9e1446507057f38a384b98167
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 9 14:33:37 2019 -0600

    parm/input.nml.IN, tests/tests/fv3_stochy: add new namelist options do_sppt, do_shum, do_skeb, do_sfcperts to namelist template, set for fv3_stochy test

commit 85b7a7a2c32a19971ac89255f9b9d595829902a7
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 9 14:31:48 2019 -0600

    ccpp/config/ccpp_prebuild_config.py, ccpp/suites/*: remove stochastic physics from CCPP config and suite definition files

commit d33df0427b1d6df35ff92edcab2e152d08499f15
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 9 14:30:55 2019 -0600

    Add new submodule stochastic_physics, located in directory with same name

commit c061af4a2d8f1a8318ca40aacdfb25ccec353f15
Merge: 2483ed32 5b120105
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 09:22:32 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion

commit 5b1201056ec3187c04f7edb9d8afaac2465b4e9b
Merge: 0ab90a12 fd7d0f1e
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 09:19:54 2019 -0600

    Merge pull request #239 from climbfuji/gmtb_develop_update_from_master_20190830

    gmtb/develop: update from master 2019/08/30

commit 2483ed324e53de72fa67de24cb1d04d492b1c862
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 08:31:04 2019 -0600

    ccpp/build_ccpp.sh modulefiles/gaea.intel/fv3: update for gaea following wcoss_cray to avoid setting NETCDF and HDF5 in modulefile

commit 45b389ae0e2fea91bb71edcceef481601827a5c5
Merge: 257f2a2e ce0c61f6
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 08:23:51 2019 -0600

    Merge pull request #240 from climbfuji/update_submodule_pointer_in_NEMSfv3gfs_20190903

    master: update submodule pointers for FV3, NEMS, WW3

commit ce0c61f644c95afc7f8dfa49ce6678d40356f54b
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 08:22:21 2019 -0600

    Update submodule pointers for FV3, NEMS, WW3

commit 257f2a2eec6f9ca902c4a2aac9fd312f24470d9b
Merge: a1a54d1f 95583de5
Author: Laurie Carson <[email protected]>
Date:   Mon Sep 2 14:15:08 2019 -0600

    Merge pull request #238 from climbfuji/update_from_noaaemc_dev_20190830

    Update GitHub NCAR master from Vlab master

commit fd7d0f1e022c60a010691a51dbc866b82a48c1c1
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 15:43:28 2019 -0600

    Update submodule pointer for ccpp-physics

commit 15c64a190aa7af38dce3a9154d7bae9bbe1e381c
Author: Jun Wang <[email protected]>
Date:   Tue Aug 27 20:23:05 2019 +0000

    NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2)

    Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d

commit 50962a88c93b90930d747e1e007f10c21b042fdb
Author: Jun Wang <[email protected]>
Date:   Sun Aug 25 02:56:05 2019 +0000

    NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3

    Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9

commit 5f481c8f5a36a2c0ae56dd02645bd5ec591dcc6f
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 15:33:53 2019 -0600

    Update .gitmodules to point to NCAR repro and branch gmtb/develop for new submodule WW3, update submodule pointer

commit 872693bea7e160edb478b05cfb68e96e3671ec8c
Author: Jessica.Meixner <[email protected]>
Date:   Tue Aug 20 12:10:34 2019 +0000

    NEMSfv3gfs: this commit refs #65894, adding WW3

commit 95583de5ce6c4cbb83abe35b969476ba88628cca
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 11:29:32 2019 -0600

    Add default branch develop for WW3 and update submodule pointer

commit a2fc15ec2140ef5b5e80dc4bd4b2d88430a9d59d
Author: Jun Wang <[email protected]>
Date:   Tue Aug 27 20:23:05 2019 +0000

    NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2)

    Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d

commit c15a5f76e78c08c68e3afb0d5e5194f55dcdd855
Author: Jun Wang <[email protected]>
Date:   Sun Aug 25 02:56:05 2019 +0000

    NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3

    Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9

commit 100dc801cb2901618f778720c6ad4426070ce4c7
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 10:17:47 2019 -0600

    Update .gitmodules so that WW3 points to the NCAR repository

commit 25aa6fe7d55240903a132fc81dd9fb9b8aca0631
Author: Jessica.Meixner <[email protected]>
Date:   Tue Aug 20 12:10:34 2019 +0000

    NEMSfv3gfs: this commit refs #65894, adding WW3

commit 0ab90a125b63b89d29bb73e0f640000b6c5b74a0
Merge: cee7b3fe b77f1471
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 07:42:51 2019 -0600

    Merge pull request #237 from climbfuji/gmtb_develop_update_submodule_pointers_20190830_1

    gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics

commit b77f14719ac17b564f85d69383c99b8b161de817
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 07:40:55 2019 -0600

    Update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics

commit cee7b3fe354e07a29dbc9fa49235d909f4cf528a
Merge: f4671a1c d02d0c16
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 07:39:01 2019 -0600

    Merge pull request #234 from climbfuji/bugfix_rt_conf

    gmtb/develop: bugfix for rt.conf

commit a1a54d1f5159aa927ac4d4b01abaa6548040ff52
Merge: 8a1e235d ed0c436a
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 29 15:32:08 2019 -0600

    Merge pull request #236 from grantfirl/master

    add Julie as codeowner

commit ed0c436ad2aa1c52a6a6a5fa1ca7a9fc210956d3
Author: Grant Firl <[email protected]>
Date:   Thu Aug 29 15:00:06 2019 -0600

    add Julie as codeowner

commit f4671a1c9f394609f33e0f04a893ab1a8147f8bb
Merge: ea22d467 a667940f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 29 14:58:30 2019 -0600

    Merge pull request #235 from grantfirl/gmtb/develop

    add Julie as codeowner

commit a667940f9cfff12e41cb5134f86e66babc76081f
Author: Grant Firl <[email protected]>
Date:   Thu Aug 29 14:52:42 2019 -0600

    add Julie as codeowner

commit d02d0c1679ffd3b57b2d2d049f86efdc531b51fd
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 29 08:06:47 2019 -0600

    Update submodule pointers for FV3 NEMS ccpp/physics

commit 65238966d6c574b314bc1b0e487e59f78d9b5552
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 29 08:06:02 2019 -0600

    tests/rt.conf: bugfix, correct name of suite FV3_GFS_2017_gfdlmprad_gwd to FV3_GFS_2017_gfdlmp_gwd

commit 282ad6b657ff250eefba8092975b484681479d8a
Author: Qingfu Liu <[email protected]>
Date:   Wed Aug 28 19:53:24 2019 +0000

    correct file content tests/tests/fv3_ccpp_gfs_myj

commit 29993a06e32ea08b588bed93d7e088ea386daf7c
Author: Qingfu Liu <[email protected]>
Date:   Wed Aug 28 19:49:13 2019 +0000

    correct file content tests/tests/fv3_ccpp_gfs_myj

commit 5ea40b233539ed0b8a86d8ef54ed59cba4c89621
Merge: e06da970 01f6a0f8
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 16:40:43 2019 -0600

    Merge pull request #232 from climbfuji/gsd_develop_update_submodule_pointers_20190827

    gsd/develop: update submodule pointers for FV3 and ccpp/physics

commit 01f6a0f87727751a8252a576bceed7bc5b9729a7
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 16:39:04 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit ea22d467cb4e6289768ca625133f68d803cc4772
Merge: 8ba3d4ae 3150c4b4
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 16:32:58 2019 -0600

    Merge pull request #231 from climbfuji/update_submodule_pointers_gmtb_develop_20190827

    gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/physics

commit 3150c4b432ac93119c578a1d0cb12a7b0e1e3fd6
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 16:30:38 2019 -0600

    Update submodule pointers for FV3 NEMS ccpp/physics

commit 8ba3d4ae5bfd786895d54c26f398821d28601821
Merge: 6aba4551 f91d7846
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 15:45:47 2019 -0600

    Merge pull request #230 from climbfuji/hera_update_20190827

    gmtb/develop: update hera config, enable regression testing

commit f91d78461f1608bfdbe1de0d38a9527f8381cea7
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 15:04:42 2019 -0600

    Update submodule pointer for NEMS

commit 235b712ba15d59c4d56aa990d3a9edeb30999496
Author: Grant Firl <[email protected]>
Date:   Mon Aug 26 15:40:00 2019 -0600

    add CCPP-based NoahMP test to RTs for rt_ccpp_gmtb.conf (plus new SDF based on suite_FV3_GFS_2017_gfdlmp.xml)

commit e74e0d2ebd6430e39c2f869c7241be858776f385
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:53:55 2019 -0600

    Update submodule pointer for NEMS

commit 290a484f1e3be763aced44c2dfd099c6d832ce2e
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:53:33 2019 -0600

    rt_hera_test.conf: temporary regression test config for testing on hera

commit c52d27b0d8e99029d1e723ecde07d3ba0813da09
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:52:20 2019 -0600

    tests/rt.sh: enable regression testing with rt.sh, changes from Ratko, update STMP and PTMP for GMTB

commit 6b9508c93f81383418ad1b779ce8d4bc2358aba4
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:48:01 2019 -0600

    modulefiles/hera.intel/fv3: update path to modules following transition from Juno test system to hera

commit eb229d3cb145a7811d69348cb2167fbd5a5a097d
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:47:33 2019 -0600

    ccpp/build_ccpp.sh and conf/configure.fv3.hera.intel: don't use the AVX512 flags yet on hera

commit 6aba455146a4a8d4629704e5226570116091691f
Merge: 5c289838 75b5715e
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 07:17:17 2019 -0600

    Merge pull request #229 from climbfuji/gmtb_develop_update_submodule_20190827

    gmtb/develop: update submodule pointers for FV3, ccpp-physics, ccpp-framework

commit 75b5715e41c6f978defaa04e38d41b8d20326488
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 07:15:40 2019 -0600

    Update submodule pointer for FV3, ccpp-physics, ccpp-framework

commit 5c289838c1bc9d443319e4cdad4b23df5215fc77
Merge: eb7b7ae8 48000a93
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 07:13:20 2019 -0600

    Merge pull request #218 from bluefinweiwei/cires_ugwp

    UGWP Version 0

commit 51299cadc6514199225605df04246e54446d6486
Author: Qingfu Liu <[email protected]>
Date:   Tue Aug 27 11:03:43 2019 +0000

    add MYJ surface layer scheme and MYJ PBL scheme to CCPP

commit 75596f60b0d684413cf8a6f42567cd92195b3661
Author: Grant Firl <[email protected]>
Date:   Mon Aug 26 13:34:15 2019 -0600

    remove noahmp_pre.F90 from CCPP config since code was moved to existing interstitial scheme

commit d913c69b7e11b23f5666c4f8432a6e0c80fe7036
Author: Grant Firl <[email protected]>
Date:   Fri Aug 23 18:04:07 2019 -0600

    remove module_wrf_utl.f90 from ccpp_prebuild_config scheme dependency list

commit 48000a93dfd9b07159d3d006016c854e14a20886
Merge: 266c9885 e38eda36
Author: Weiwei <[email protected]>
Date:   Fri Aug 23 13:53:36 2019 -0600

    Merge pull request #3 from climbfuji/ugwd_dom

    Delete tests/rt_with_ugwp.conf

commit e38eda36b8d1d7181400059c3d7cc1af3511534d
Merge: 789ab6bc 266c9885
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 13:50:02 2019 -0600

    Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into ugwd_dom

commit 789ab6bc2ae4e04cdeaa580abbb0cbcf0c4d9cb7
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 13:48:59 2019 -0600

    Delete tests/rt_with_ugwp.conf

commit 266c9885f97153154fa6caaaf0bbac87addda38b
Author: Weiwei <[email protected]>
Date:   Fri Aug 23 13:47:39 2019 -0600

    Delete rt_ugwp_only.conf

    Removed.

commit b27a08aa3d2544024a0fb6adf0a38d339ac3a18c
Merge: 5ffd3ed8 adc9df36
Author: Weiwei <[email protected]>
Date:   Fri Aug 23 13:22:27 2019 -0600

    Merge pull request #2 from climbfuji/ugwd_dom

    UGWD update for open PR to gmtb/develop

commit adc9df36fbe5a866bcab77f709d368286d2a496d
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 11:59:13 2019 -0600

    Update submodule pointers

commit 4410e285d4f0a99a68f2da799fa8d9d117e8ef1a
Merge: 1499c32c eb7b7ae8
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 09:34:58 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into ugwd_dom

commit 1499c32c862f4471a72c85204208d01c847f8d2d
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 09:11:39 2019 -0600

    Update submodule pointers for FV3, ccpp/framework, ccpp/physics

commit 7ae19849e6a6365adab0642e674a3e16b04cbbf3
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 09:10:02 2019 -0600

    ccpp/suites/*: rename gwdps_pre to GFS_GWD_generic_pre, remove duplicate UGWP test, rename CCPP UGWP test to match existing IPD test, update regression test configuration files

commit eb7b7ae83ec4cc828f640810512ab528f6f7a7c8
Merge: 91e485ca cb382b97
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 07:52:49 2019 -0600

    Merge pull request #226 from climbfuji/update_submodule_pointers_gmtb_develop_20190823

    gmtb/develop: update submodule pointers for FV3 and ccpp/framework 2019/08/23

commit cb382b97d933d35a3b40ab7dfa6428079ce810fa
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 07:50:39 2019 -0600

    Update submodule pointers for FV3 and ccpp/framework

commit 91e485cac197bb902c095770526dfc503f09f028
Merge: 00168544 4741dd2f
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 07:49:50 2019 -0600

    Merge pull request #225 from climbfuji/github_gmtb_develop_wcoss_cray_gaea_jet_cheyenne_20190819

    gmtb/develop: bugfixes and updates for wcoss/cray/gaea/jet/cheyenne

commit 4741dd2f282be63e8e3ceefc0c1e8ad3deb487ab
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 22 16:25:46 2019 -0600

    modulefiles/theia.intel/fv3: workaround to fix EMC's broken yaml-cpp module

commit 0dd206c8fc9afde82ee11d145e6021e5e36a6d10
Author: Grant Firl <[email protected]>
Date:   Thu Aug 22 13:40:10 2019 -0600

    add noahmp_pre.F90 to ccpp_prebuild_config.py

commit 816818024cc3b512794a1a5507628157de8ce23d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 22 12:25:37 2019 -0600

    doc/README_CENTOS.txt, modulefiles/linux.gnu/fv3: final touches on documentation, update of modulefiles to match the defaults in READ_{CENTOS,UBUNTU}.txt (strictly speaking not necessary)

commit 0ab1908a4add63af6250cb33a68505a618a24202
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 23:20:31 2019 -0600

    doc/README_UBUNTU.txt: add missing environment variables for buidling CCPP version on UBUNTU

commit 6624c650b92a10bbbe282bf8f3f10618c4d4630c
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 22:09:22 2019 -0600

    doc/README_{UBUNTU,CENTOS,MACOSX_*}.txt: add note that 'make check' for ESMF is optional and that it can take a very long time

commit 3893de3c5e7e7c561017cf0a6428c41ac07f7704
Author: Grant Firl <[email protected]>
Date:   Wed Aug 21 11:39:39 2019 -0600

    update ccpp_prebuild_config.py for NoahMP

commit 7415d501a0d9ba1a1ef4235f15141cf254ca4eb5
Merge: 00168544 5ffd3ed8
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 14:24:29 2019 -0600

    Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into HEAD

commit 6151127e825b9c195a2e3088989910359736355f
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 12:29:42 2019 -0600

    doc/README_CENTOS.txt: instructions for configuring CentOS linux systems, similar to the existing Ubuntu Linux instructions

commit 0d4dd7f1140793f21e9bb7989cf4ada7fb4f0245
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 11:27:38 2019 -0600

    doc/README_UBUNTU.txt: update documentation to latest state, simplify installation of netCDF

commit 1d9d132652c04a8c1c7ad8f4393cb7fb7d31f4a1
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 11:25:51 2019 -0600

    tests/rt_ccpp_gmtb.conf: remove PGI compiler, this allows to remove multiple entires for runs that only work with Intel and GNU; remove wcoss entries (no dynamic builds), replace gaea (no dynamic build) with jet

commit f9ebd24090c38d5037d315f42b5b2f7029c0437b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 10:03:28 2019 -0600

    tests/rt_ccpp_gsd.conf: enable running GSD regression tests on other platforms than theia (regression test baseline now contains GSD input data)

commit b2a7580ced26fd21dd9b98688911747e89cfe10b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 10:00:35 2019 -0600

    tests/rt_ccpp_caps.conf: remove PGI

commit d1e2b5c8f23cb5c1c78186270b39c54540fcf8c6
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 09:58:44 2019 -0600

    conf/before_components.mk, modulefiles/theia.gnu/fv3: replace user-based libraries with modules located in GMTB project directory, enable theia.gnu for testing

commit ffc518e0f4f139fcab0b4138f5e4b78542c25f06
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 09:56:32 2019 -0600

    Update ESMF on Cheyenne, Gaea, Jet; for Jet, also remove the module load anaconda (no longer needed and causes ccpp_prebuild.py to fail)

commit e64d8a75dd76d5bed8c1eb47b2ae74b18ee6006f
Merge: 00168544 73d2015f
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 19 09:54:08 2019 -0600

    Merge branch 'gaea_jet_cheyenne_support_and_initial_gnu_tests' of gerrit:NEMSfv3gfs into HEAD

commit e06da970ac5fb5f177fe6e3baba9ff70e3f44ebd
Merge: 18cd1a1a 175971b7
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 19 08:53:49 2019 -0600

    Merge pull request #224 from climbfuji/gsd_develop_update_submodule_pointers_20190819

    gsd/develop update submodule pointers 2019/08/19

commit 175971b7d34d49c371f659adeba870b91628cbc0
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 19 08:51:05 2019 -0600

    Update submodule pointer for FV3

commit 18cd1a1aadddb816b0f8903fcb059556768b001b
Merge: 9fbef48c f663d381
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 19 08:48:34 2019 -0600

    Merge pull request #221 from climbfuji/update_gsd_develop_with_vlab_master_20190816

    Update GitHub gsd/develop with Vlab master 2019/08/16

commit 001685445cb219fd9c4565c0bc3885800c68f813
Merge: 50eca7bb df214421
Author: Dom Heinzeller <[email protected]>
Date:   Sat Aug 17 16:32:16 2019 -0600

    Merge pull request #223 from climbfuji/gmtb_develop_update_submodule_pointers_20190817

    gmtb/develop: update submodule pointers 2019/08/17

commit df214421c29449cb1f800ed33ffe3b7a9a87663c
Author: Dom Heinzeller <[email protected]>
Date:   Sat Aug 17 16:30:49 2019 -0600

    Update submodule pointers for FV3 NEMS ccpp/framework ccpp/physics

commit 50eca7bbf0cb47d05591286257acd6c5fa4c2edc
Merge: de32c317 1686f099
Author: Dom Heinzeller <[email protected]>
Date:   Sat Aug 17 16:28:47 2019 -0600

    Merge pull request #212 from climbfuji/make_linux_and_macos_modulefiles_flexible

    Generalize and update Linux modulefile, add support for hera

commit f663d38105a20ddc0c60467493972c47f0aa35e9
Merge: 2a1c6868 9fbef48c
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 13:47:46 2019 -0600

    Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into update_gsd_develop_with_vlab_master_20190816

commit 9fbef48c1b10bc348acc0ca073248e04be7da5b5
Merge: f86243fc a995462a
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 13:47:28 2019 -0600

    Merge pull request #217 from climbfuji/update_submodule_pointer_NEMS_20190816

    gsd/develop: update submodule pointer for new NEMS repo

commit 2a1c6868319d02394b1012be4fe4bd05bc77d1cd
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:59:04 2019 +0000

    Fix hash to NEMS

commit 9dfe49f9e0d244186055e272d1298f1e3b18c799
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:29:12 2019 +0000

    NEMS transitioned from Vlab to GitHub.

    NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc)

    Clone NEMS from new repository:
    git clone https://github.com/NOAA-EMC/NEMS

commit ef403be0795a476ead513ff57ffb5c1f9e75aa7a
Author: Ratko Vasic <[email protected]>
Date:   Mon Aug 5 18:34:48 2019 +0000

    This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko):

    Summary of updates in NEMS commit:
    -- removes 'module load slurm' commands
    -- Gerhard's mediator updates to run large number of ATM/MED pets and have
       ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089
    -- Increase path size of directory for building WW3 error capturing in
       NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507
    -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085
    -- Raffaele's change on debug mode of compiling fv3_gsdchem

    Applications:

    EMC_FV3-MOM6-CICE5
    -- Updated module to point to ESMFv8.0.0bs40
    EMC_FV3-GSDCHEM-WW3
    -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here).
    EMC_FV3GFS-GSDCHEM
    -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point
       to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray
    NEMSfv3gfs
    -- Updated module to point to ESMFv8.0.0bs40

commit 9d7ddc8695a0742b4865582dabc38824b0b321b6
Author: Dusan Jovic <[email protected]>
Date:   Fri Jul 26 13:51:22 2019 +0000

    Fix an issue introduced in the previous commit where merge conflict markers were inadvertently committed.

    Change-Id: Ib699fae7acda1bbb2cf6475461b41d09a6fba578

commit b53a1117e79822ae158ba8e7f41f10b206c1bf68
Author: Jun.Wang <[email protected]>
Date:   Sat Jul 20 14:17:26 2019 +0000

    NEMSfv3gfs: This commits #refs 65267 adding obs-based roughness length formulations and adjustment of K for hurricane simulations

    Change-Id: Ia71047b284c7ae09b390a2e375b8cba94fdfc46c

commit 1686f099f08ac2a7f0909c292619fededec1aabf
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 12:25:22 2019 -0600

    Update submodule pointer for ccpp/framework

commit 4418499222f2ba30e6965160c4e59493baa202d4
Merge: 0cd98189 4524ac0b
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 12:03:42 2019 -0600

    Merge branch 'update_gmtb_develop_from_vlab_master_20190816' of https://github.com/climbfuji/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible

commit 4524ac0b7a4982d28e50c6cebb1b514ce6ac7b7e
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:59:04 2019 +0000

    Fix hash to NEMS

commit 8b114af25680fe70f8d302cac8c087e87c472b14
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:29:12 2019 +0000

    NEMS transitioned from Vlab to GitHub.

    NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc)

    Clone NEMS from new repository:
    git clone https://github.com/NOAA-EMC/NEMS

commit f61d93cb6fb5bf5bacf6c0d6c38429bb71af4f71
Author: Ratko Vasic <[email protected]>
Date:   Mon Aug 5 18:34:48 2019 +0000

    This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko):

    Summary of updates in NEMS commit:
    -- removes 'module load slurm' commands
    -- Gerhard's mediator updates to run large number of ATM/MED pets and have
       ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089
    -- Increase path size of directory for building WW3 error capturing in
       NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507
    -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085
    -- Raffaele's change on debug mode of compiling fv3_gsdchem

    Applications:

    EMC_FV3-MOM6-CICE5
    -- Updated module to point to ESMFv8.0.0bs40
    EMC_FV3-GSDCHEM-WW3
    -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here).
    EMC_FV3GFS-GSDCHEM
    -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point
       to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray
    NEMSfv3gfs
    -- Updated module to point to ESMFv8.0.0bs40

commit 8a1e235d57a13d40e8ba71d3ce174d62dfa4f265
Merge: 62eaf40f 8ad5805c
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 11:41:45 2019 -0600

    Merge pull request #220 from climbfuji/update_submodule_pointer_fv3

    Update submodule pointer for FV3

commit 8ad5805ce1c219f8ba2962d6e84403dd11dfeac2
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 11:40:27 2019 -0600

    Update submodule pointer for FV3

commit 62eaf40f77eae7a450913e9aba54b967da37b9b3
Merge: a8e8fa58 f6eae698
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 11:36:46 2019 -0600

    Merge pull request #219 from climbfuji/update_github_master_from_vlab_master_20190816

    Update GitHub master from Vlab master 2019/08/16

commit f6eae698bf40e3adca1b8d95417cb2c8905df7f4
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:59:04 2019 +0000

    Fix hash to NEMS

commit dcc7a818cc8a19c0ec894015c4bd0d8003768fc0
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:29:12 2019 +0000

    NEMS transitioned from Vlab to GitHub.

    NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc)

    Clone NEMS from new repository:
    git clone https://github.com/NOAA-EMC/NEMS

commit a9cb714dd858e2d46571cd89776275847e2ced7a
Author: Ratko Vasic <[email protected]>
Date:   Mon Aug 5 18:34:48 2019 +0000

    This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko):

    Summary of updates in NEMS commit:
    -- removes 'module load slurm' commands
    -- Gerhard's mediator updates to run large number of ATM/MED pets and have
       ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089
    -- Increase path size of directory for building WW3 error capturing in
       NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507
    -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085
    -- Raffaele's change on debug mode of compiling fv3_gsdchem

    Applications:

    EMC_FV3-MOM6-CICE5
    -- Updated module to point to ESMFv8.0.0bs40
    EMC_FV3-GSDCHEM-WW3
    -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here).
    EMC_FV3GFS-GSDCHEM
    -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point
       to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray
    NEMSfv3gfs
    -- Updated module to point to ESMFv8.0.0bs40

commit f595bcfeb55c8503c3b3f290cb22169fe75b6065
Author: Dusan Jovic <[email protected]>
Date:   Fri Jul 26 13:51:22 2019 +0000

    Fix an issue introduced in the previous commit where merge conflict markers were inadvertently committed.

    Change-Id: Ib699fae7acda1bbb2cf6475461b41d09a6fba578

commit ae772b0a3fc5b75e3814f2328ac35139d4f4ed99
Author: Jun.Wang <[email protected]>
Date:   Sat Jul 20 14:17:26 2019 +0000

    NEMSfv3gfs: This commits #refs 65267 adding obs-based roughness length formulations and adjustment of K for hurricane simulations

    Change-Id: Ia71047b284c7ae09b390a2e375b8cba94fdfc46c

commit 5ffd3ed8b437297040036dc835f86142da8e8879
Author: Weiwei <[email protected]>
Date:   Wed Jul 3 12:23:33 2019 -0600

    	new file:   ccpp/config/ccpp_prebuild_config.py
            new file:   ccpp/suites/suite_FV3_GFS_2017_gfdlmp_ugwp.xml
    	new file:   parm/ccpp_ugwp.nml.IN
            new file:   tests/rt_ugwp_only.conf
    	new file:   tests/rt_ugwp.sh
            new file:   tests/tests/fv3_gfdlmprad_ugwp
    	new file:   tests/tests/fv3_ccpp_gfdlmprad_ugwp
            new file:   tests/rt_ccpp_gmtb_with_ugwp.conf
            new file:   tests/rt_with_ugwp.conf

commit a995462aeaa86ce2640c75b77847ff2b9709ce5e
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 10:08:44 2019 -0600

    Update submodule pointer for NEMS following transition of EMC NEMS repo Vlab -> GitHub

commit 0cd98189b738c9d1fafef7d8c8011582fb6b677b
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 09:55:10 2019 -0600

    Update submodule pointer for NEMS following the move from Vlab to GitHub

commit ac49f23be40492ab8908161e5c48cd7f10f6c499
Merge: a2c18766 de32c317
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 09:22:54 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible

commit de32c31777ff15f0f850bcdc6b7f18e049993794
Merge: ddcf419d d1932bc5
Author: Laurie Carson <[email protected]>
Date:   Fri Aug 16 09:20:59 2019 -0600

    Merge pull request #216 from llpcarson/update_nems

    Update submodule pointers for new NEMS repo

commit d1932bc52876a361c3234b00bb0a18aa6039babd
Author: Laurie Carson <[email protected]>
Date:   Fri Aug 16 09:15:13 2019 -0600

    Update submodule pointers for new NEMS repo

commit a8e8fa58e812f2d0fe88e05c8d278af55ff5a4bf
Author: Laurie Carson <[email protected]>
Date:   Fri Aug 16 09:11:32 2019 -0600

    Update submodule pointers for new NEMS repo, latest ccpp-physics (some SCM updates only)

commit a2c1876603ea7b6e959d85d27566f7350a8398a2
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 15 17:20:11 2019 -0600

    Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics

commit 30a41c84d22b9f8bf03d086017c2e5d420531c59
Merge: 42be0321 ddcf419d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 15 17:17:29 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible

commit 42be032139a3e79533fd78f22fedac23efacd056
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 14 16:49:50 2019 -0600

    Add support for hera with juno (hera test system) modifications

commit ddcf419d388d2d181aa0a9a5a2f6a9e19d41539e
Merge: 1b5d9cc1 9884db3d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 15 12:01:13 2019 -0600

    Merge pull request #213 from climbfuji/update_macosx_20190811

    Update MacOSX build configuration 2019/08/11

commit 9884db3d03067c73ec6f66e23769d8af25fef7a4
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 14 08:33:39 2019 -0600

    Update submodule pointer for FV3

commit 450819fcfcbdb624b33aa4e41fb3efcdccefd727
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 14 08:33:28 2019 -0600

    doc/README_MACOSX_clanggfortran.txt, doc/README_MACOSX_gccgfortran.txt: final touches to install/setup documentation

commit e46d3256356a971cbcaa3ce520327115a485a1ad
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 13 14:48:14 2019 -0600

    doc/README_MACOSX_*.txt: add missing command for ESMF

commit 730bdfe2286a51857b32da2a999a6f8ab51e5653
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 13 10:27:56 2019 -0600

    Update submodule pointer for FV3

commit 99ef65ba88b8964bd6c757dab910710e0f0f7107
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 13 10:27:41 2019 -0600

    doc/README_MACOSX_clanggfortran.txt: remove TODO reminders

commit e2c20771b790076a9c932b45ba0d30204914e059
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 21:03:30 2019 -0600

    modulefiles/macosx.gnu/fv3: update library versions, adjust to work with both clang+gfortran and gcc+gfortran

commit 1b3302e8cdc59aa302240a0b03ecb34141202ac5
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 21:02:43 2019 -0600

    doc/README_MACOSX_*: work in progress, saving progress

commit 35d02b6f2842d5951122777ddb6630f4ea68959d
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 21:01:46 2019 -0600

    Update submodule pointer for FV3

commit f86243fce831151f943d64b7bba62391a03f89af
Merge: c7dc843e a0596c86
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 20:30:08 2019 -0600

    Merge pull request #215 from climbfuji/update_submodule_pointer_20190812

    Update submodule pointer for ccpp/physics

commit a0596c864d8936f39a05ff314eb593211aae0b65
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 20:28:33 2019 -0600

    Update submodule pointer for ccpp/physics

commit c7dc843eb975f33368037556d0ecf6a55649584f
Merge: 1ebaea29 3d01b44f
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 20:26:50 2019 -0600

    Merge pull request #214 from climbfuji/bugfix_ruclsm_ice_temp_landmask_landuse_inconsistencies

    Bugfix RUC LSM ice temperature initialization, appbuild bugfix

commit ceef93aa0a0f5815bbca4a5fbf281bb4d9adefbe
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 09:23:58 2019 -0600

    Work in progress: provide instructions for both clang+gfortran and gcc+gfortran on MacOSX

commit 3d01b44f5b316ca5bfeb0dfa8e570074921bdfec
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 08:18:45 2019 -0600

    Update submodule pointer for ccpp/physics

commit d4773492a63cfe26bcb84c6d50c78e86855f4b05
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 08:17:43 2019 -0600

    tests/tests/fv3_ccpp_appbuild: bugfix, add back description/control dir that were unintentially removed in a previous commit

commit ae4795908cfba0955c7aed812f717cf54562cb62
Author: dom <[email protected]>
Date:   Sun Aug 11 16:07:59 2019 -0600

    conf/configure.fv3.macosx.gnu, modulefiles/macosx.gnu/fv3: add flexibility by using user-defined compiler commands and library locations (through environment variables)

commit 619382c41818dfee04a5ab1f5c3cafde7fab821b
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 9 10:35:07 2019 -0600

    modulefiles/linux.gnu/fv3: allow user to specify own locations for compilers and libraries

commit 1b5d9cc192f1032d899468379569be64a7b13bd1
Merge: e8a4da85 03553110
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 1 16:27:31 2019 -0600

    Merge pull request #211 from climbfuji/github_gmtb_develop_update_submodule_pointers_20190801

    GitHub gmtb/develop update submodule pointers 2019/08/01

commit 0355311007afd0231f93bf5039e72d6df4125292
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 1 16:25:10 2019 -0600

    Update submodule pointers for FV3, ccpp/framework, ccpp/physics

commit e8a4da8588c7495408a931cce323ca3c6f5cd190
Merge: b06eeb95 ab06c106
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 1 14:46:17 2019 -0600

    Merge pull request #210 from climbfuji/new_metadata_format_step1_20190725

    Migrate to new metadata format step 1

commit bd4cb27b7cc39d246f1aa5c055beb2506427f601
Merge: 1ebaea29 b06eeb95
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 1 08:22:28 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into HEAD

commit ab06c106e05811faf6e7ae7107769657c3e8b9e0
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 31 16:26:46 2019 -0600

    Update submodule pointers for ccpp/framework and ccpp/physics

commit 74d98ff31771e50553e2eb31e6b8cafcfc305008
Merge: b77f1871 13619a43
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 31 15:49:32 2019 -0600

    Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD

commit b77f187103fbbcf25c0871a328f094f609761193
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 31 13:39:37 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add new type definition files and TYPEDEFS_NEW_METADATA configuration entry

commit 73d2015f97e3730a334c532eef46f4ae2a3e4193
Author: Dom Heinzeller <[email protected]>
Date:   Mon Jul 22 20:49:37 2019 -0400

    tests/rt.sh, tests/fv3_conf/fv3_qsub.IN_jet -> tests/fv3_conf/fv3_slurm.IN_jet: change scheduler on jet from Moab/Torque to Slurm

commit 2312a74d685f0c348b71c41af86eefc6606fd196
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 15:14:44 2019 -0600

    conf/before_components.mk: enable jet.intel

commit e6cda943e2adc3b54005a64805c667a9185f02c4
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 14:51:30 2019 -0600

    Update submodule pointer for FV3

commit 0642cc07aa0808fc86a538e9b2ae8f8295e569ae
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 14:51:04 2019 -0600

    tests/rt.conf: add jet.intel similar to gaea.intel

commit 8607bea695293c71f879e70d910853b81b492ea5
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 14:49:21 2019 -0600

    Update modulefiles/jet.intel/fv3 to use modules created by GMTB

commit 1ebaea2974ba4f06f4c1c114faa03fde94c3e293
Merge: 2605f0b7 72c10102
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 11:47:22 2019 -0600

    Merge pull request #209 from climbfuji/update_submodule_pointer_20190719

    Update submodule pointer for ccpp/physics

commit 72c10102ce07ac8c465f571bea6a6cd5aa5fe088
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 11:45:57 2019 -0600

    Update submodule pointer for ccpp/physics

commit 2605f0b773ab7a862f9152a0c214f8da372e3d1e
Merge: cad0f201 820e0cc2
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 11:45:20 2019 -0600

    Merge pull request #208 from climbfuji/gsd_develop_ruc_bugfixes_sar_update_surface_flux_bugfix_inactive_20190718

    Gsd develop ruc bugfixes sar update surface flux bugfix inactive 20190718

commit 820e0cc2a94c9599b4a48e0f7c54900792e8cfbe
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 21:28:28 2019 -0600

    Update submodule pointer for ccpp/physics

commit d954359f8d36cda0306e9f51a8f5f3797945cd2f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 21:28:08 2019 -0600

    ccpp/suites/suite_FV3_GSD_v0.xml: add calls to temporary interstitial schemes for RUC-sfc_sice interaction

commit c3993781d192fa061dc9484342b923e149597b0f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 21:27:13 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add temporary interstitial schemes in lsm_ruc_sfc_sice_interstitial.F90

commit a8d3ec08a9ed65de0bf45d7bdd4974b7a9ae6c83
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 15:27:48 2019 -0600

    conf/configure.fv3.wcoss_cray, ccpp/build_ccpp.sh: set correct REPRO compiler flags for Intel 16, pass legacy-Intel flag to cmake

commit e0b77299c83e21bd38a1cf0a9cb4617e461c4af9
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:13:16 2019 -0600

    tests/rt_gnu.conf: initial set of GNU-based regression tests, Cheyenne only

commit 35c2ef3f34ca3ca4086d3e71b4c610b56e2659b8
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:12:47 2019 -0600

    tests/rt_utils.sh: update of regular expression for Cheyenne only

commit 4aa66b51bde51c9ec2bb3ca0b240a8bfd71bf2af
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:12:03 2019 -0600

    tests/rt.sh: temorary, change location of regression test baseline to ESRL-GSD-GMTB project directory

commit ed13c0038d6bd15da146321b8ca04ab632a07abc
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:10:58 2019 -0600

    modulefiles/gaea.intel/fv3, modulefiles/gaea.intel/fv3.intel-16.0.3.210: update of modulefiles on gaea for both Intel 16 and 18 for CCPP

commit b99c6e2a1058fea4ea7c083bcf7ba54cd9fc62b6
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:09:38 2019 -0600

    Update of Intel and GNU modulefiles for Cheyenne following the major OS upgrades beginning of July 2019

commit b74241682499f54e474d087fdc6797932534f459
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:08:31 2019 -0600

    conf/configure.fv3.gaea.intel: add option to use Intle 16, adjust repro flags if Intel 16 is used

commit 89024d4dd5034aedec7ed197e84388e888c01a7f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:03:32 2019 -0600

    conf/before_components.mk: enable gaea.intel, add switch to use Intel 16 compiler on this machine (default is Intel 18)

commit 9909cd1c5711baf1a59595f3e4047aaa8b960606
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:01:42 2019 -0600

    ccpp/CMakeLists.txt, ccpp/build_ccpp.sh: add option INTEL16=Y to build_ccpp.sh, which triggers a cmake flag LEGACY_INTEL to use a different fp-model option in REPRO mode

commit cad0f201bf3de40b3e6b4f24a491ff18d654ac5b
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 10:46:02 2019 -0600

    Update CODEOWNERS to enable branch protection

commit 89a0f8eaf60b393739658b9605de3194d8159a9d
Merge: 259b675c c7c692c0
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 20:50:49 2019 -0600

    Merge pull request #207 from climbfuji/gsd_develop_update_submodule_pointers_20190717

    gsd/develop: update submodule pointers for FV3 and ccpp/physics

commit c7c692c02b8a680c6e8f7c03f0a46eee1afdbd4b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 20:49:18 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit 259b675cfd32286d7995b7c5a2483344f0e81213
Merge: cb0d5e30 75906385
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 20:48:13 2019 -0600

    Merge pull request #206 from climbfuji/add_regression_tests_20190717

    gsd/develop: add regression tests for Thompson only, GF only, MYNN only & cleanup

commit 759063853f2cae2173afe9234c7d04424baaafb7
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:47:10 2019 -0600

    tests/fv3_conf/ccpp_gsd_run.IN: add logic to use correct field table, depending on choice of microphysics schemes and whether a TKE PBL scheme is used

commit 835265e06943d297959cc45645d0d5c516e675e2
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:31:47 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit bb7f8838d76dba2f3b8ef85a3015f3fa51b8dd2f
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:31:32 2019 -0600

    parm/ccpp_gsd.nml.IN, tests/fv3_conf/ccpp_gsd_run.IN, tests/rt_ccpp_gsd.conf: use additional namelist variables for more flexibility

commit d454c1cff7d9cf740f2129620f09eddb8fe0cd30
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:29:19 2019 -0600

    tests/tests/fv3_ccpp_*: add new tests for individual schemes of the GSD suite, remove increase of wallclock time on Cheyenne

commit b93828f3c8f338f9bc5a56f0c67a9b88765efa74
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:28:07 2019 -0600

    tests/default_vars.sh: add additional default variables for microphysics

commit b06eeb95aeba76e3ad3e6210cb8b4ff81707086b
Merge: f4790463 4e253679
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 09:42:39 2019 -0600

    Merge pull request #205 from climbfuji/gitmodules_add_default_branches_20190716

    gmtb/develop: add default branches for submodules to .gitmodules

commit 4e25367977bbfb401e604e867cafd9e3b09892f0
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 16 15:15:37 2019 -0600

    .gitmodules: set default branches for submodules

commit cb0d5e30c0a244e1bc14b57b9dbc331b7781319d
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 16 15:04:21 2019 -0600

    Update submodule pointers for all submodules

commit 22fd642f89cd516f177e160ecb486d6ed179a56c
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 16 15:04:06 2019 -0600

    .gitmodules: set default branches of submodules to gsd/develop

commit f1b1245a9f566a13b1d2dabca46a12729fd1c418
Merge: f9330c32 f4790463
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 16 15:03:24 2019 -0600

    Update CODEOWNERS to GSD t…

Loading branch information

climbfuji committed Nov 26, 2019

commit 6fc17ca178b20fe57111ef3b7ee2a22f3c0b31dc

FV3

Submodule FV3 updated 6 files

+1 −1		ccpp/physics
+83 −0		ccpp/suites/suite_FV3_GSD_SAR.xml
+13 −0		gfsphysics/GFS_layer/GFS_diagnostics.F90
+30 −17		gfsphysics/GFS_layer/GFS_typedefs.F90
+6 −0		gfsphysics/GFS_layer/GFS_typedefs.meta
+31 −3		io/FV3GFS_io.F90

parm/ccpp_gsd_sar-model_configure.IN

-Original file line number
+Diff line change
@@ -0,0 +1,48 @@
+total_member: 1
+PE_MEMBER01: 840
+start_year: 2019
+start_month: 07
+start_day: 12
+start_hour: 12
+start_minute: 0
+start_second: 0
+nhours_fcst: 3
+RUN_CONTINUE: .false.
+ENS_SPS: .false.
+dt_atmos: 50
+cpl: .false.
+calendar: 'julian'
+memuse_verbose: .false.
+atmos_nthreads: 2
+use_hyper_thread: .false.
+ncores_per_node: 24
+debug_affinity: .true.
+restart_interval: 0
+output_1st_tstep_rst: .false.
+quilting: .true.
+print_esmf: .false.
+write_groups: 1
+write_tasks_per_group: 24
+num_files: 2
+filename_base: 'dyn''phy'
+output_file: 'netcdf'
+write_nemsioflip: .false.
+write_fsyncflag: .false.
+output_grid: 'lambert_conformal'
+cen_lon: -97.5
+cen_lat: 38.5
+stdlat1: 38.5
+stdlat2: 38.5
+nx: 1738
+ny: 974
+lon1: -122.21414225
+lat1: 22.41403305
+dx: 3000.0
+dy: 3000.0
+nfhout: 1
+nfhmax_hf: 60
+nfhout_hf: 1
+nsout: -1

parm/ccpp_gsd_sar.nml.IN

-Original file line number
+Diff line change
@@ -0,0 +1,296 @@
+&amip_interp_nml
+ interp_oi_sst = .true.
+ use_ncep_sst = .true.
+ use_ncep_ice = .false.
+ no_anom_sst = .false.
+ data_set = 'reynolds_oi',
+ date_out_of_range = 'climo',
+/
+&atmos_model_nml
+ blocksize = 32
+ chksum_debug = .false.
+ dycore_only = .false.
+ fdiag = 3
+ ccpp_suite = 'FV3_GSD_SAR'
+/
+&diag_manager_nml
+ prepend_date = .F.
+/
+&fms_io_nml
+ checksum_required = .false.
+ max_files_r = 100,
+ max_files_w = 100,
+/
+&fms_nml
+ clock_grain = 'ROUTINE',
+ domains_stack_size = 2000200,
+ print_memory_usage = .false.
+/
+&fv_grid_nml
+ grid_file = 'INPUT/grid_spec.nc'
+/
+ &fv_core_nml
+ layout = 34,24
+ io_layout = 1,1
+ npx = 1735
+ npy = 1009
+ ntiles = 1,
+ npz = 64
+ !grid_type = -1
+ make_nh = .T.
+ fv_debug = .T.
+ range_warn = .T.
+ reset_eta = .F.
+ n_sponge = 24
+ nudge_qv = .F.
+ tau = 5.
+ rf_cutoff = 20.e2
+ d2_bg_k1 = 0.20
+ d2_bg_k2 = 0.04
+ kord_tm = -11
+ kord_mt = 11
+ kord_wz = 11
+ kord_tr = 11
+ hydrostatic = .F.
+ phys_hydrostatic = .F.
+ use_hydro_pressure = .F.
+ beta = 0.
+ a_imp = 1.
+ p_fac = 0.1
+ k_split = 4
+ n_split = 5
+ nwat = 6
+ na_init = 1
+ d_ext = 0.0
+ dnats = 0
+ fv_sg_adj = 300
+ d2_bg = 0.
+ nord = 2
+ dddmp = 0.1
+ d4_bg = 0.12
+ vtdm4 = 0.02
+ ke_bg = 0.
+ do_vort_damp = .true.
+ external_ic = .T.
+ external_eta = .T.
+ gfs_phil = .false.
+ nggps_ic = .T.
+ mountain = .F.
+ ncep_ic = .F.
+ d_con = 1.0
+ delt_max = 0.002
+ hord_mt = 6
+ hord_vt = 6
+ hord_tm = 6
+ hord_dp = -6
+ hord_tr = 8
+ adjust_dry_mass = .F.
+ consv_te = 0.
+ do_sat_adj = .F.
+ consv_am = .F.
+ fill = .T.
+ dwind_2d = .F.
+ print_freq = 6
+ warm_start = .F.
+ no_dycore = .false.
+ z_tracer = .T.
+ read_increment = .F.
+ res_latlon_dynamics = "fv3_increment.nc"
+ do_schmidt = .true.
+ target_lat = 38.5
+ target_lon = -97.5
+ stretch_fac = 0.999
+!! nord_zs_filter = 4
+ n_zs_filter = 0
+ regional = .true.
+ bc_update_interval = 3
+ full_zs_filter = .F. !unreleased feature
+ nord_zs_filter = 4
+ n_zs_filter = 0 ! safety
+/
+&surf_map_nml
+ zero_ocean = .F.
+ cd4 = 0.12
+ cd2 = -1
+ n_del2_strong = 0
+ n_del2_weak = 2
+ n_del4 = 1
+ max_slope = 0.4
+ peak_fac = 1.
+/
+&external_ic_nml
+ filtered_terrain = .true.
+ levp = 65
+ gfs_dwinds = .true.
+ checker_tr = .F.
+ nt_checker = 0
+/
+&gfs_physics_nml
+ fhzero = 6.
+ h2o_phys = .true.
+ ldiag3d = .false.
+ fhcyc = 0
+ nst_anl = .true.
+ use_ufo = .true.
+ pre_rad = .false.
+ ncld = 5
+ imp_physics = 8
+ ttendlim = 0.005
+ ltaerosol = .T.
+ lradar = .T.
+ pdfcld = .false.
+ fhswr = 3600.
+ fhlwr = 3600.
+ ialb = 1
+ iems = 1
+ iaer = 111
+ ico2 = 2
+ isubc_sw = 2
+ isubc_lw = 2
+ isol = 2
+ lwhtr = .true.
+ swhtr = .true.
+ cnvgwd = .false.
+ shal_cnv = .false.
+ cal_pre = .false.
+ redrag = .true.
+ dspheat = .true.
+ hybedmf = .F.
+ satmedmf = .false.
+ lheatstrg = .F.
+ do_mynnedmf = .T.
+ do_mynnsfclay = .false.
+ random_clds = .false.
+ trans_trac = .true.
+ cnvcld = .false.
+ imfshalcnv = 0
+ imfdeepcnv = 0
+ cdmbgwd = 3.5,0.25
+ prslrd0 = 0.
+ ivegsrc = 1
+ isot = 1
+ debug = .false.
+ oz_phys = .false.
+ oz_phys_2015 = .true.
+ nstf_name = 2,1,1,0,5
+ cplflx = .F.
+ iau_delthrs = 6
+ iaufhrs = 30
+ iau_inc_files = ''
+ do_sppt = .F.
+ do_shum = .F.
+ do_skeb = .F.
+ do_sfcperts = .F.
+ lsm = 3
+ lsoil = 4
+ lsoil_lsm = 9
+ iopt_dveg = 2
+ iopt_crs = 1
+ iopt_btr = 1
+ iopt_run = 1
+ iopt_sfc = 1
+ iopt_frz = 1
+ iopt_inf = 1
+ iopt_rad = 1
+ iopt_alb = 2
+ iopt_snf = 4
+ iopt_tbot = 2
+ iopt_stc = 1
+ icloud_bl = 1
+ bl_mynn_tkeadvect = .true.
+ bl_mynn_edmf = 1
+ bl_mynn_edmf_mom = 1
+/
+&interpolator_nml
+ interp_method = 'conserve_great_circle'
+/
+&namsfc
+ FNGLAC = "global_glacier.2x2.grb",
+ FNMXIC = "global_maxice.2x2.grb",
+ FNTSFC = "RTGSST.1982.2012.monthly.clim.grb",
+ FNSNOC = "global_snoclim.1.875.grb",
+ FNZORC = "igbp",
+ FNALBC = "global_snowfree_albedo.bosu.t126.384.190.rg.grb",
+ FNALBC2 = "global_albedo4.1x1.grb",
+ FNAISC = "CFSR.SEAICE.1982.2012.monthly.clim.grb",
+ FNTG3C = "global_tg3clim.2.6x1.5.grb",
+ FNVEGC = "global_vegfrac.0.144.decpercent.grb",
+ FNVETC = "global_vegtype.igbp.t126.384.190.rg.grb",
+ FNSOTC = "global_soiltype.statsgo.t126.384.190.rg.grb",
+ FNSMCC = "global_soilmgldas.t126.384.190.grb",
+ FNMSKH = "seaice_newland.grb",
+ FNTSFA = "",
+ FNACNA = "",
+ FNSNOA = "",
+ FNVMNC = "global_shdmin.0.144x0.144.grb",
+ FNVMXC = "global_shdmax.0.144x0.144.grb",
+ FNSLPC = "global_slope.1x1.grb",
+ FNABSC = "global_mxsnoalb.uariz.t126.384.190.rg.grb",
+ LDEBUG =.false.,
+ FSMCL(2) = 99999
+ FSMCL(3) = 99999
+ FSMCL(4) = 99999
+ FTSFS = 90
+ FAISS = 99999
+ FSNOL = 99999
+ FSICL = 99999
+ FTSFL = 99999,
+ FAISL = 99999,
+ FVETL = 99999,
+ FSOTL = 99999,
+ FvmnL = 99999,
+ FvmxL = 99999,
+ FSLPL = 99999,
+ FABSL = 99999,
+ FSNOS = 99999,
+ FSICS = 99999,
+/
+&nam_stochy
+ lon_s=768,
+ lat_s=384,
+ ntrunc=382,
+ SKEBNORM=1,
+ SKEB_NPASS=30,
+ SKEB_VDOF=5,
+ SKEB=@[SKEB],
+ SKEB_TAU=2.16E4,
+ SKEB_LSCALE=1000.E3,
+ SHUM=@[SHUM],
+ SHUM_TAU=21600,
+ SHUM_LSCALE=500000,
+ SPPT=@[SPPT],
+ SPPT_TAU=21600,
+ SPPT_LSCALE=500000,
+ SPPT_LOGIT=.TRUE.,
+ SPPT_SFCLIMIT=.TRUE.,
+ ISEED_SHUM=1,
+ ISEED_SKEB=2,
+ ISEED_SPPT=3,
+/
+&nam_sfcperts
+ NSFCPERT=6,
+ PERTZ0=-999.,
+ PERTSHC=-999.,
+ PERTZT=-999.,
+ PERTLAI=-999.,
+ PERTVEGF=-999.,
+ PERTALB=-999.,
+ SFC_TAU=21600,
+ SFC_LSCALE=500000,
+ ISEED_SFC=0,
+ SPPT_LAND=.FALSE.,
+/

tests/fv3_conf/ccpp_gsd_sar_run.IN

-Original file line number
+Diff line change
@@ -0,0 +1,35 @@
+rm -fr INPUT RESTART
+mkdir INPUT RESTART
+cp -r /scratch1/BMC/gmtb/ufs-weather-model/RT/NEMSfv3gfs/FV3_input_data_temporary_gsd_sar/*.nc INPUT/
+cp @[RTPWD]/FV3_input_data/INPUT/aerosol.dat .
+cp @[RTPWD]/FV3_input_data/INPUT/co2historicaldata_201*.txt .
+cp @[RTPWD]/FV3_input_data/INPUT/sfc_emissivity_idx.txt .
+cp @[RTPWD]/FV3_input_data/INPUT/solarconstant_noaa_an.txt .
+cp @[RTPWD]/FV3_input_data/ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77 ./global_o3prdlos.f77
+cp @[RTPWD]/FV3_input_data/global_h2o_pltc.f77 ./global_h2oprdlos.f77
+cp @[RTPWD]/FV3_input_data/*grb .
+cp @[RTPWD]/FV3_input_data/*_table .
+# Copy SAR diag and field table files
+cp /scratch1/BMC/gmtb/ufs-weather-model/RT/NEMSfv3gfs/FV3_input_data_temporary_gsd_sar/diag_table_gsd_sar diag_table
+cp /scratch1/BMC/gmtb/ufs-weather-model/RT/NEMSfv3gfs/FV3_input_data_temporary_gsd_sar/field_table_gsd_sar field_table
+cp @[RTPWD]/FV3_input_data/*configure .
+# Thompson MP lookup tables - copy standard and SIONlib tables of precomputed tables
+cp @[RTPWD]/FV3_input_data_gsd/thompson_tables_precomp.sl .
+cp @[RTPWD]/FV3_input_data_gsd/qr_acr_qs.dat .
+cp @[RTPWD]/FV3_input_data_gsd/qr_acr_qg.dat .
+cp @[RTPWD]/FV3_input_data_gsd/freezeH2O.dat .
+cp @[RTPWD]/FV3_input_data_gsd/CCN_ACTIVATE.BIN .
+cp ${PATHRT}/../ccpp/suites/suite_${CCPP_SUITE}.xml suite_${CCPP_SUITE}.xml
+# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH, append to module-setup.sh
+echo " " >> module-setup.sh
+echo "# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH"
+echo "export LD_LIBRARY_PATH=${PATHRT}/../${CCPP_LIB_DIR}:${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}" >> module-setup.sh
+echo " " >> module-setup.sh

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