Upgrade spack-stack from version 1.5.1 to 1.6.0 (#2093)

*UFSWM:
        *Updates modulefiles to spack-stack version 1.6.0
        *Updates Hera GNU version to 13.3

modulefiles/ufs_acorn.intel.lua

@@ -2,7 +2,7 @@ help([[
 Load environment to build UFS on Acorn with Intel compiler
 ]])
 
-prepend_path("MODULEPATH", "/lfs/h1/emc/nceplibs/noscrub/spack-stack/spack-stack-1.5.1/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/lfs/h1/emc/nceplibs/noscrub/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 
 load("stack-intel")
 load("stack-cray-mpich")

modulefiles/ufs_common.lua

@@ -8,19 +8,19 @@ local ufs_modules = {
  {["libpng"] = "1.6.37"},
  {["hdf5"] = "1.14.0"},
  {["netcdf-c"] = "4.9.2"},
- {["netcdf-fortran"] = "4.6.0"},
+ {["netcdf-fortran"] = "4.6.1"},
  {["parallelio"] = "2.5.10"},
- {["esmf"] = "8.5.0"},
- {["fms"] = "2023.02.01"},
+ {["esmf"] = "8.6.0"},
+ {["fms"] = "2023.04"},
  {["bacio"] = "2.4.1"},
  {["crtm"] = "2.4.0"},
  {["g2"] = "3.4.5"},
  {["g2tmpl"] = "1.10.2"},
  {["ip"] = "4.3.0"},
- {["sp"] = "2.3.3"},
+ {["sp"] = "2.5.0"},
  {["w3emc"] = "2.10.0"},
  {["gftl-shared"] = "1.6.1"},
- {["mapl"] = "2.40.3-esmf-8.5.0"},
+ {["mapl"] = "2.40.3-esmf-8.6.0"},
  {["scotch"] = "7.0.4"},
 }
 

modulefiles/ufs_gaea.intel.lua

@@ -10,7 +10,7 @@ load("intel-classic/2023.1.0")
 load("cray-mpich/8.1.25")
 load("python/3.9.12")
 
-prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/spack-stack-1.5.1/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/modulefiles")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2023.1.0"
@@ -19,7 +19,7 @@ load(pathJoin("stack-intel", stack_intel_ver))
 stack_cray_mpich_ver=os.getenv("stack_cray_mpich_ver") or "8.1.25"
 load(pathJoin("stack-cray-mpich", stack_cray_mpich_ver))
 
-stack_python_ver=os.getenv("stack_python_ver") or "3.10.8"
+stack_python_ver=os.getenv("stack_python_ver") or "3.10.13"
 load(pathJoin("stack-python", stack_python_ver))
 
 load("ufs_common")

modulefiles/ufs_hera.gnu.lua

@@ -2,12 +2,14 @@ help([[
 loads UFS Model prerequisites for Hera/GNU
 ]])
 
-prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.5.1/envs/unified-env-rocky8/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/scratch2/NCEPDEV/stmp1/role.epic/installs/gnu/modulefiles")
+prepend_path("MODULEPATH", "/scratch2/NCEPDEV/stmp1/role.epic/installs/openmpi/modulefiles")
+prepend_path("MODULEPATH", "/scratch2/NCEPDEV/stmp1/role.epic/spack-stack/spack-stack-1.6.0_gnu13/envs/ufs-wm-srw-rocky8/install/modulefiles/Core")
 
-stack_gnu_ver=os.getenv("stack_gnu_ver") or "9.2.0"
+stack_gnu_ver=os.getenv("stack_gnu_ver") or "13.3.0"
 load(pathJoin("stack-gcc", stack_gnu_ver))
 
-stack_openmpi_ver=os.getenv("stack_openmpi_ver") or "4.1.5"
+stack_openmpi_ver=os.getenv("stack_openmpi_ver") or "4.1.6"
 load(pathJoin("stack-openmpi", stack_openmpi_ver))
 
 cmake_ver=os.getenv("cmake_ver") or "3.23.1"
@@ -18,6 +20,9 @@ load("ufs_common")
 nccmp_ver=os.getenv("nccmp_ver") or "1.9.0.1"
 load(pathJoin("nccmp", nccmp_ver))
 
+prepend_path("CPPFLAGS", " -I/apps/slurm_hera/23.11.3/include/slurm"," ")
+prepend_path("LD_LIBRARY_PATH", "/apps/slurm_hera/23.11.3/lib")
+
 setenv("CC", "mpicc")
 setenv("CXX", "mpic++")
 setenv("FC", "mpif90")

modulefiles/ufs_hera.intel.lua

@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for Hera/Intel
 ]])
 
-prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.5.1/envs/unified-env-rocky8/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.5.0"
 load(pathJoin("stack-intel", stack_intel_ver))

modulefiles/ufs_hercules.gnu.lua

@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for Hercules/GNU
 ]])
 
-prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.5.1/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 -- for mvapich2, need:
 prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/hercules/modulefiles")
 

modulefiles/ufs_hercules.intel.lua

@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for Hercules/Intel
 ]])
 
-prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.5.1/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.9.0"
 load(pathJoin("stack-intel", stack_intel_ver))

modulefiles/ufs_jet.intel.lua

@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for Jet/Intel
 ]])
 
-prepend_path("MODULEPATH", "/mnt/lfs4/HFIP/hfv3gfs/role.epic/spack-stack/spack-stack-1.5.1/envs/unified-env-rocky8/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/mnt/lfs4/HFIP/hfv3gfs/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.5.0"
 load(pathJoin("stack-intel", stack_intel_ver))

modulefiles/ufs_noaacloud.intel.lua

@@ -2,8 +2,7 @@ help([[
 loads UFS Model prerequisites for NOAA Parallelworks/Intel
 ]])
 
-
-prepend_path("MODULEPATH", "/contrib/spack-stack/spack-stack-1.5.1/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/contrib/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.3.0"
 load(pathJoin("stack-intel", stack_intel_ver))

modulefiles/ufs_orion.intel.lua

@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for Orion/Intel
 ]])
 
-prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.5.1/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2022.0.2"
 load(pathJoin("stack-intel", stack_intel_ver))

modulefiles/ufs_s4.intel.lua

@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for S4/Intel
 ]])
 
-prepend_path("MODULEPATH", "/data/prod/jedi/spack-stack/spack-stack-1.5.0/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/data/prod/jedi/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.5.0"
 load(pathJoin("stack-intel", stack_intel_ver))

tests/bl_date.conf

@@ -1 +1 @@
-export BL_DATE=20240530
+export BL_DATE=20240603

tests/logs/OpnReqTests_control_p8_hera.log

@@ -1,9 +1,9 @@
-Thu May 30 23:49:24 UTC 2024
+Tue Jun 4 22:17:00 UTC 2024
 Start Operation Requirement Test
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_bit_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1853474/bit_base_bit_base
+baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_bit_base_gnu
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1695475/bit_base_bit_base
 Checking test bit_base results ....
 Moving baseline bit_base files ....
  Moving sfcf000.nc .........OK
@@ -51,14 +51,14 @@ Moving baseline bit_base files ....
  Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
  Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
 
- 0: The total amount of wall time = 207.284592
- 0: The maximum resident set size (KB) = 1909148
+ 0: The total amount of wall time = 283.395800
+ 0: The maximum resident set size (KB) = 1444564
 
 Test bit_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_dbg_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1853474/dbg_base_dbg_base
+baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_dbg_base_gnu
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1695475/dbg_base_dbg_base
 Checking test dbg_base results ....
 Moving baseline dbg_base files ....
  Moving sfcf000.nc .........OK
@@ -106,14 +106,14 @@ Moving baseline dbg_base files ....
  Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
  Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
 
- 0: The total amount of wall time = 2019.198702
- 0: The maximum resident set size (KB) = 1873432
+ 0: The total amount of wall time = 976.634482
+ 0: The maximum resident set size (KB) = 1416500
 
 Test dbg_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1853474/dcp_dcp
+baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1695475/dcp_dcp
 Checking test dcp results ....
  Comparing sfcf000.nc .....USING NCCMP......OK
  Comparing sfcf021.nc .....USING NCCMP......OK
@@ -160,14 +160,14 @@ Checking test dcp results ....
  Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
  Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
 
- 0: The total amount of wall time = 177.233106
- 0: The maximum resident set size (KB) = 1879672
+ 0: The total amount of wall time = 253.914740
+ 0: The maximum resident set size (KB) = 1420920
 
 Test dcp PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1853474/mpi_mpi
+baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1695475/mpi_mpi
 Checking test mpi results ....
  Comparing sfcf000.nc .....USING NCCMP......OK
  Comparing sfcf021.nc .....USING NCCMP......OK
@@ -214,14 +214,14 @@ Checking test mpi results ....
  Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
  Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
 
- 0: The total amount of wall time = 177.213010
- 0: The maximum resident set size (KB) = 1883996
+ 0: The total amount of wall time = 249.447063
+ 0: The maximum resident set size (KB) = 1432868
 
 Test mpi PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1853474/rst_rst
+baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1695475/rst_rst
 Checking test rst results ....
  Comparing sfcf000.nc .....USING NCCMP......OK
  Comparing sfcf021.nc .....USING NCCMP......OK
@@ -268,14 +268,14 @@ Checking test rst results ....
  Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
  Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
 
- 0: The total amount of wall time = 215.448488
- 0: The maximum resident set size (KB) = 1881620
+ 0: The total amount of wall time = 248.336854
+ 0: The maximum resident set size (KB) = 1423912
 
 Test rst PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1853474/std_base_std_base
+baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1695475/std_base_std_base
 Checking test std_base results ....
 Moving baseline std_base files ....
  Moving sfcf000.nc .........OK
@@ -323,14 +323,14 @@ Moving baseline std_base files ....
  Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
  Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
 
- 0: The total amount of wall time = 178.761689
- 0: The maximum resident set size (KB) = 1879288
+ 0: The total amount of wall time = 252.084050
+ 0: The maximum resident set size (KB) = 1429872
 
 Test std_base PASS
 
 
-baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_1853474/thr_thr
+baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1695475/thr_thr
 Checking test thr results ....
  Comparing sfcf000.nc .....USING NCCMP......OK
  Comparing sfcf021.nc .....USING NCCMP......OK
@@ -377,11 +377,11 @@ Checking test thr results ....
  Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
  Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
 
- 0: The total amount of wall time = 176.979771
- 0: The maximum resident set size (KB) = 1880244
+ 0: The total amount of wall time = 252.909572
+ 0: The maximum resident set size (KB) = 1408380
 
 Test thr PASS
 
 OPERATION REQUIREMENT TEST WAS SUCCESSFUL
-Fri May 31 01:21:09 UTC 2024
-Elapsed time: 01h:31m:46s. Have a nice day!
+Tue Jun 4 23:22:43 UTC 2024
+Elapsed time: 01h:05m:43s. Have a nice day!

tests/logs/OpnReqTests_cpld_control_nowave_noaero_p8_hera.log

@@ -1,6 +1,9 @@
+Wed Jun 5 13:31:08 UTC 2024
+Start Operation Requirement Test
+
 
 baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_dbg_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_326777/dbg_base_dbg_base
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3079325/dbg_base_dbg_base
 Checking test dbg_base results ....
 Moving baseline dbg_base files ....
  Moving sfcf021.tile1.nc .........OK
@@ -63,14 +66,14 @@ Moving baseline dbg_base files ....
  Moving RESTART/iced.2021-03-23-21600.nc .........OK
  Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK
 
- 0: The total amount of wall time = 1511.676145
- 0: The maximum resident set size (KB) = 1553376
+ 0: The total amount of wall time = 1510.383503
+ 0: The maximum resident set size (KB) = 1529668
 
 Test dbg_base PASS
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1319479/rst_rst
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3079325/rst_rst
 Checking test rst results ....
  Comparing sfcf021.tile1.nc .....USING NCCMP......OK
  Comparing sfcf021.tile2.nc .....USING NCCMP......OK
@@ -132,14 +135,14 @@ Checking test rst results ....
  Comparing RESTART/iced.2021-03-23-21600.nc .....USING NCCMP......OK
  Comparing RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .....USING NCCMP......OK
 
- 0: The total amount of wall time = 431.329311
- 0: The maximum resident set size (KB) = 1519904
+ 0: The total amount of wall time = 517.813920
+ 0: The maximum resident set size (KB) = 1524680
 
 Test rst PASS
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
-working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_326777/std_base_std_base
+working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3079325/std_base_std_base
 Checking test std_base results ....
 Moving baseline std_base files ....
  Moving sfcf021.tile1.nc .........OK
@@ -202,8 +205,11 @@ Moving baseline std_base files ....
  Moving RESTART/iced.2021-03-23-21600.nc .........OK
  Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK
 
- 0: The total amount of wall time = 407.381438
- 0: The maximum resident set size (KB) = 1545864
+ 0: The total amount of wall time = 430.945213
+ 0: The maximum resident set size (KB) = 1513244
 
 Test std_base PASS
 
+OPERATION REQUIREMENT TEST WAS SUCCESSFUL
+Wed Jun 5 14:37:12 UTC 2024
+Elapsed time: 01h:06m:04s. Have a nice day!