Add GISTIC and CNV Pan-can (#93)

ucscXena · Aug 19, 2019 · d559739 · d559739
1 parent 4b97675
commit d559739
Showing 1 changed file with 12 additions and 1 deletion.
diff --git a/xena_gdc_etl/scripts/panTCGA.py b/xena_gdc_etl/scripts/panTCGA.py
@@ -82,6 +82,8 @@ def main():
  'htseq_fpkm-uq',
  'mirna',
  'masked_cnv',
+ 'cnv',
+ 'gistic',
  'muse_snv',
  'mutect2_snv',
  'somaticsniper_snv',
@@ -99,10 +101,17 @@ def main():
  }
 
  for dtype in datatypes:
- if dtype in ['htseq_counts', 'htseq_fpkm', 'htseq_fpkm-uq', 'mirna']:
+ if dtype in [
+ 'htseq_counts',
+ 'htseq_fpkm',
+ 'htseq_fpkm-uq',
+ 'mirna',
+ 'gistic'
+ ]:
  merge_axis = 1
  elif dtype in [
  'masked_cnv',
+ 'cnv',
  'muse_snv',
  'mutect2_snv',
  'somaticsniper_snv',
@@ -119,6 +128,8 @@ def main():
  'htseq_fpkm',
  'htseq_fpkm-uq',
  'mirna',
+ 'cnv',
+ 'gistic',
  'masked_cnv',
  'muse_snv',
  'mutect2_snv',