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ucscXena · Jan 14, 2020 · 0df237b · 0df237b
1 parent db2fd74
commit 0df237b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/converter/ArribaToXena.py b/converter/ArribaToXena.py
@@ -161,7 +161,7 @@ def doAltGene2(data, columnPos):
  'confidence' :[doConfidence, 9]
 }
 
-def filterfunction (data, columnPos): return data[columnPos['confidence']] in ['high', 'medium']
+def filterfunction (data, columnPos): return data[columnPos['confidence']] == 'high'
 
 def buildjson(assembly, cohort, output):
  output = output + '.json'
@@ -173,7 +173,7 @@ def buildjson(assembly, cohort, output):
  J['assembly'] = assembly
  J['cohort'] = cohort
  J['version'] = datetime.date.today().isoformat()
- J['wrangling_procedure'] = "Only fusion variants with confidence = high and medium is kept"
+ J['wrangling_procedure'] = "Only fusion variants with confidence = high is kept"
  json.dump(J, fout, indent = 4)
  fout.close()