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It is a way of annotation. [1,0,0] stands for nucleotides that are not paired (. in dot-bracket annotation),[0,1,0] stands for ( while [0,0,1] stands for ) .You may refer to dot-bracket annotation to understand this.
Hi, I am wandering why ss_label is a 600x3 matrix? I know that 600 is sequence length after cutting, and what the 3 columns represent?
BTW, your work is awesome!
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