GitHub - tytell/fibers: Python and Matlab code for tracking muscle fiber geometry

tytell / fibers Public

Python and Matlab code for tracking muscle fiber geometry

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Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
fibertracker		fibertracker
.DS_Store		.DS_Store
.gitignore		.gitignore
Drerio4-saggital1.jpg		Drerio4-saggital1.jpg
Drerio4-saggital2.jpg		Drerio4-saggital2.jpg
Fiber Angle Test 2D.ipynb		Fiber Angle Test 2D.ipynb
Fiber Angle Test 3D.ipynb		Fiber Angle Test 3D.ipynb
Fiber angle test2.ipynb		Fiber angle test2.ipynb
Get fiber angles.ipynb		Get fiber angles.ipynb
Get fiber angles2.ipynb		Get fiber angles2.ipynb
GetFiberAngles.log		GetFiberAngles.log
Lewis_Drerio_4.xdmf		Lewis_Drerio_4.xdmf
Make Danio16 HDF file.ipynb		Make Danio16 HDF file.ipynb
Make Fish17 HDF.ipynb		Make Fish17 HDF.ipynb
Make HDF file.ipynb		Make HDF file.ipynb
Plot Fiber Angles 3D.ipynb		Plot Fiber Angles 3D.ipynb
Plot fiber angles.ipynb		Plot fiber angles.ipynb
Process and Export Fiber Angles.ipynb		Process and Export Fiber Angles.ipynb
Test fibers and planes.ipynb		Test fibers and planes.ipynb
Test parallel HDF5.ipynb		Test parallel HDF5.ipynb
Test.ipynb		Test.ipynb
Untitled.ipynb		Untitled.ipynb
Untitled1.ipynb		Untitled1.ipynb
fiberAngle3.m		fiberAngle3.m
fibers.py		fibers.py
fibertracker.py		fibertracker.py
get_volume_angle.m		get_volume_angle.m
plot_Drerio4_saggital.m		plot_Drerio4_saggital.m
progbar.ipynb		progbar.ipynb
progress.py		progress.py
test.log		test.log
test_animation.ipynb		test_animation.ipynb
test_animation.py		test_animation.py
test_correlate.ipynb		test_correlate.ipynb
test_parallel.ipynb		test_parallel.ipynb
test_volume_angle.m		test_volume_angle.m
testangles.mat		testangles.mat
testparallel.m		testparallel.m
yo.vts		yo.vts