bioinformatic pipeline for GLORI

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

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sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

Optimized version of PIPE-CLIP tool (bug fixed)

A (mostly) universal methylation extractor for BS-seq experiments.

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Ultrafast bisulfite

🧪 m6A-CAMseq

Scalable Tool for Gene Network Reverse Engineering

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

The next version of bwa-mem

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

RoseTTAFold2 protein/nucleic acid complex prediction

Set of guidelines and structure of a Python project.

✂️ Trim sequencing adapters from NGS data automatically

General Use Scripts and Helper functions

Variant calling from RNA based sequencing data.

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

Grok open release

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Apptainer: Application containers for Linux

Another Gtf/Gff Analysis Toolkit