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TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
y9c / PIPE-CLIP
Forked from QBRC/PIPE-CLIPOptimized version of PIPE-CLIP tool (bug fixed)
A (mostly) universal methylation extractor for BS-seq experiments.
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
Scalable Tool for Gene Network Reverse Engineering
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
RoseTTAFold2 protein/nucleic acid complex prediction
Set of guidelines and structure of a Python project.
Variant calling from RNA based sequencing data.
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.